Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.2.1 dated 2024-03-22 and 1.3.0 dated 2025-02-13
parsnip-1.2.1/parsnip/R/contr_one_hot.R |only parsnip-1.2.1/parsnip/R/grouped_binomial.R |only parsnip-1.2.1/parsnip/build/parsnip.pdf |only parsnip-1.2.1/parsnip/man/contr_one_hot.Rd |only parsnip-1.2.1/parsnip/man/rmd/one-hot.Rmd |only parsnip-1.2.1/parsnip/man/rmd/one-hot.md |only parsnip-1.2.1/parsnip/man/rpart_train.Rd |only parsnip-1.2.1/parsnip/tests/testthat/_snaps/boost_tree_C50.md |only parsnip-1.2.1/parsnip/tests/testthat/_snaps/poisson_reg.md |only parsnip-1.2.1/parsnip/tests/testthat/_snaps/proportional_hazards.md |only parsnip-1.2.1/parsnip/tests/testthat/_snaps/survival_reg.md |only parsnip-1.2.1/parsnip/tests/testthat/test_aaaa.R |only parsnip-1.2.1/parsnip/tests/testthat/test_adds.R |only parsnip-1.2.1/parsnip/tests/testthat/test_args_and_modes.R |only parsnip-1.2.1/parsnip/tests/testthat/test_augment.R |only parsnip-1.2.1/parsnip/tests/testthat/test_boost_tree.R |only parsnip-1.2.1/parsnip/tests/testthat/test_boost_tree_C50.R |only parsnip-1.2.1/parsnip/tests/testthat/test_boost_tree_xgboost.R |only parsnip-1.2.1/parsnip/tests/testthat/test_condense_control.R |only parsnip-1.2.1/parsnip/tests/testthat/test_convert_data.R |only parsnip-1.2.1/parsnip/tests/testthat/test_decision_tree.R |only parsnip-1.2.1/parsnip/tests/testthat/test_default_engines.R |only parsnip-1.2.1/parsnip/tests/testthat/test_descriptors.R |only parsnip-1.2.1/parsnip/tests/testthat/test_extract.R |only parsnip-1.2.1/parsnip/tests/testthat/test_failed_models.R |only parsnip-1.2.1/parsnip/tests/testthat/test_fit_interfaces.R |only parsnip-1.2.1/parsnip/tests/testthat/test_gen_additive_model.R |only parsnip-1.2.1/parsnip/tests/testthat/test_grouped_glm.R |only parsnip-1.2.1/parsnip/tests/testthat/test_linear_reg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_linear_reg_keras.R |only parsnip-1.2.1/parsnip/tests/testthat/test_logistic_reg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_logistic_reg_keras.R |only parsnip-1.2.1/parsnip/tests/testthat/test_mars.R |only parsnip-1.2.1/parsnip/tests/testthat/test_misc.R |only parsnip-1.2.1/parsnip/tests/testthat/test_mlp.R |only parsnip-1.2.1/parsnip/tests/testthat/test_mlp_keras.R |only parsnip-1.2.1/parsnip/tests/testthat/test_mlp_nnet.R |only parsnip-1.2.1/parsnip/tests/testthat/test_model_basics.R |only parsnip-1.2.1/parsnip/tests/testthat/test_multinom_reg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_multinom_reg_keras.R |only parsnip-1.2.1/parsnip/tests/testthat/test_multinom_reg_nnet.R |only parsnip-1.2.1/parsnip/tests/testthat/test_nearest_neighbor.R |only parsnip-1.2.1/parsnip/tests/testthat/test_nearest_neighbor_kknn.R |only parsnip-1.2.1/parsnip/tests/testthat/test_nullmodel.R |only parsnip-1.2.1/parsnip/tests/testthat/test_packages.R |only parsnip-1.2.1/parsnip/tests/testthat/test_partykit.R |only parsnip-1.2.1/parsnip/tests/testthat/test_predict_formats.R |only parsnip-1.2.1/parsnip/tests/testthat/test_print.R |only parsnip-1.2.1/parsnip/tests/testthat/test_proportional_hazards.R |only parsnip-1.2.1/parsnip/tests/testthat/test_rand_forest.R |only parsnip-1.2.1/parsnip/tests/testthat/test_rand_forest_ranger.R |only parsnip-1.2.1/parsnip/tests/testthat/test_re_registration.R |only parsnip-1.2.1/parsnip/tests/testthat/test_registration.R |only parsnip-1.2.1/parsnip/tests/testthat/test_surv_reg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_surv_reg_flexsurv.R |only parsnip-1.2.1/parsnip/tests/testthat/test_surv_reg_survreg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_survival_reg.R |only parsnip-1.2.1/parsnip/tests/testthat/test_svm_linear.R |only parsnip-1.2.1/parsnip/tests/testthat/test_svm_poly.R |only parsnip-1.2.1/parsnip/tests/testthat/test_svm_rbf.R |only parsnip-1.2.1/parsnip/tests/testthat/test_translate.R |only parsnip-1.2.1/parsnip/tests/testthat/test_update.R |only parsnip-1.2.1/parsnip/tests/testthat/test_varying.R |only parsnip-1.2.1/parsnip/vignettes/articles |only parsnip-1.3.0/parsnip/DESCRIPTION | 33 parsnip-1.3.0/parsnip/MD5 | 782 +++++----- parsnip-1.3.0/parsnip/NAMESPACE | 33 parsnip-1.3.0/parsnip/NEWS.md | 52 parsnip-1.3.0/parsnip/R/aaa-import-standalone-obj-type.R |only parsnip-1.3.0/parsnip/R/aaa-import-standalone-types-check.R |only parsnip-1.3.0/parsnip/R/aaa_models.R | 360 ++-- parsnip-1.3.0/parsnip/R/aaa_multi_predict.R | 22 parsnip-1.3.0/parsnip/R/aaa_quantiles.R |only parsnip-1.3.0/parsnip/R/add_in.R | 2 parsnip-1.3.0/parsnip/R/adds.R | 2 parsnip-1.3.0/parsnip/R/arguments.R | 66 parsnip-1.3.0/parsnip/R/augment.R | 9 parsnip-1.3.0/parsnip/R/autoplot.R | 28 parsnip-1.3.0/parsnip/R/bag_tree.R | 4 parsnip-1.3.0/parsnip/R/bart.R | 46 parsnip-1.3.0/parsnip/R/boost_tree.R | 72 parsnip-1.3.0/parsnip/R/c5_rules.R | 31 parsnip-1.3.0/parsnip/R/case_weights.R | 13 parsnip-1.3.0/parsnip/R/condense_control.R | 24 parsnip-1.3.0/parsnip/R/control_parsnip.R | 18 parsnip-1.3.0/parsnip/R/convert_data.R | 115 + parsnip-1.3.0/parsnip/R/cubist_rules.R | 54 parsnip-1.3.0/parsnip/R/decision_tree.R | 85 - parsnip-1.3.0/parsnip/R/descriptors.R | 38 parsnip-1.3.0/parsnip/R/discrim_flexible.R | 17 parsnip-1.3.0/parsnip/R/discrim_linear.R | 6 parsnip-1.3.0/parsnip/R/discrim_regularized.R | 13 parsnip-1.3.0/parsnip/R/engine_docs.R | 7 parsnip-1.3.0/parsnip/R/engines.R | 29 parsnip-1.3.0/parsnip/R/extract.R | 32 parsnip-1.3.0/parsnip/R/fit.R | 161 +- parsnip-1.3.0/parsnip/R/fit_helpers.R | 118 - parsnip-1.3.0/parsnip/R/gen_additive_mod.R | 18 parsnip-1.3.0/parsnip/R/glm_grouped.R |only parsnip-1.3.0/parsnip/R/glmnet-engines.R | 56 parsnip-1.3.0/parsnip/R/install_packages.R | 17 parsnip-1.3.0/parsnip/R/linear_reg.R | 32 parsnip-1.3.0/parsnip/R/linear_reg_data.R | 48 parsnip-1.3.0/parsnip/R/linear_reg_quantreg.R |only parsnip-1.3.0/parsnip/R/logistic_reg.R | 37 parsnip-1.3.0/parsnip/R/mars.R | 31 parsnip-1.3.0/parsnip/R/misc.R | 196 +- parsnip-1.3.0/parsnip/R/mlp.R | 63 parsnip-1.3.0/parsnip/R/mlp_brulee_two_layer.R |only parsnip-1.3.0/parsnip/R/mlp_data.R | 166 ++ parsnip-1.3.0/parsnip/R/model_object_docs.R | 45 parsnip-1.3.0/parsnip/R/multinom_reg.R | 8 parsnip-1.3.0/parsnip/R/nearest_neighbor.R | 18 parsnip-1.3.0/parsnip/R/nearest_neighbor_data.R | 18 parsnip-1.3.0/parsnip/R/nullmodel.R | 45 parsnip-1.3.0/parsnip/R/parsnip-package.R | 4 parsnip-1.3.0/parsnip/R/partykit.R | 10 parsnip-1.3.0/parsnip/R/pls.R | 6 parsnip-1.3.0/parsnip/R/poisson_reg.R | 10 parsnip-1.3.0/parsnip/R/predict.R | 144 + parsnip-1.3.0/parsnip/R/predict_class.R | 22 parsnip-1.3.0/parsnip/R/predict_classprob.R | 39 parsnip-1.3.0/parsnip/R/predict_hazard.R | 2 parsnip-1.3.0/parsnip/R/predict_interval.R | 4 parsnip-1.3.0/parsnip/R/predict_linear_pred.R | 2 parsnip-1.3.0/parsnip/R/predict_numeric.R | 27 parsnip-1.3.0/parsnip/R/predict_quantile.R | 73 parsnip-1.3.0/parsnip/R/predict_raw.R | 2 parsnip-1.3.0/parsnip/R/predict_survival.R | 2 parsnip-1.3.0/parsnip/R/predict_time.R | 24 parsnip-1.3.0/parsnip/R/print.R | 4 parsnip-1.3.0/parsnip/R/rand_forest.R | 15 parsnip-1.3.0/parsnip/R/rand_forest_aorsf.R | 2 parsnip-1.3.0/parsnip/R/rand_forest_data.R | 20 parsnip-1.3.0/parsnip/R/reexports.R | 7 parsnip-1.3.0/parsnip/R/repair_call.R | 10 parsnip-1.3.0/parsnip/R/req_pkgs.R | 2 parsnip-1.3.0/parsnip/R/required_pkgs.R | 6 parsnip-1.3.0/parsnip/R/sparsevctrs.R |only parsnip-1.3.0/parsnip/R/standalone-survival.R | 13 parsnip-1.3.0/parsnip/R/surv_reg.R | 2 parsnip-1.3.0/parsnip/R/surv_reg_data.R | 38 parsnip-1.3.0/parsnip/R/survival-censoring-model.R | 4 parsnip-1.3.0/parsnip/R/survival-censoring-weights.R | 40 parsnip-1.3.0/parsnip/R/survival_reg.R | 2 parsnip-1.3.0/parsnip/R/svm_linear.R | 19 parsnip-1.3.0/parsnip/R/svm_poly.R | 2 parsnip-1.3.0/parsnip/R/svm_rbf.R | 2 parsnip-1.3.0/parsnip/R/svm_rbf_data.R | 8 parsnip-1.3.0/parsnip/R/tidy_glmnet.R | 13 parsnip-1.3.0/parsnip/R/tidy_liblinear.R | 4 parsnip-1.3.0/parsnip/R/translate.R | 16 parsnip-1.3.0/parsnip/R/tunable.R | 118 - parsnip-1.3.0/parsnip/R/tune_args.R | 5 parsnip-1.3.0/parsnip/R/update.R | 11 parsnip-1.3.0/parsnip/R/varying.R | 8 parsnip-1.3.0/parsnip/README.md | 4 parsnip-1.3.0/parsnip/build/stage23.rdb |binary parsnip-1.3.0/parsnip/build/vignette.rds |binary parsnip-1.3.0/parsnip/inst/add-in/gadget.R | 9 parsnip-1.3.0/parsnip/inst/doc/parsnip.R | 18 parsnip-1.3.0/parsnip/inst/doc/parsnip.Rmd | 10 parsnip-1.3.0/parsnip/inst/doc/parsnip.html | 32 parsnip-1.3.0/parsnip/inst/models.tsv | 13 parsnip-1.3.0/parsnip/man/add_on_exports.Rd | 16 parsnip-1.3.0/parsnip/man/augment.Rd | 2 parsnip-1.3.0/parsnip/man/bart-internal.Rd | 11 parsnip-1.3.0/parsnip/man/case_weights.Rd | 4 parsnip-1.3.0/parsnip/man/case_weights_allowed.Rd | 2 parsnip-1.3.0/parsnip/man/condense_control.Rd | 7 parsnip-1.3.0/parsnip/man/convert_helpers.Rd | 11 parsnip-1.3.0/parsnip/man/details_boost_tree_lightgbm.Rd | 33 parsnip-1.3.0/parsnip/man/details_boost_tree_xgboost.Rd | 18 parsnip-1.3.0/parsnip/man/details_discrim_linear_sparsediscrim.Rd | 2 parsnip-1.3.0/parsnip/man/details_discrim_quad_sparsediscrim.Rd | 2 parsnip-1.3.0/parsnip/man/details_linear_reg_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_linear_reg_glmnet.Rd | 8 parsnip-1.3.0/parsnip/man/details_linear_reg_lm.Rd | 4 parsnip-1.3.0/parsnip/man/details_linear_reg_lme.Rd | 2 parsnip-1.3.0/parsnip/man/details_linear_reg_lmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_linear_reg_quantreg.Rd |only parsnip-1.3.0/parsnip/man/details_linear_reg_stan_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_logistic_reg_LiblineaR.Rd | 8 parsnip-1.3.0/parsnip/man/details_logistic_reg_glm.Rd | 4 parsnip-1.3.0/parsnip/man/details_logistic_reg_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_logistic_reg_glmnet.Rd | 8 parsnip-1.3.0/parsnip/man/details_logistic_reg_stan_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_mars_earth.Rd | 5 parsnip-1.3.0/parsnip/man/details_mlp_brulee.Rd | 22 parsnip-1.3.0/parsnip/man/details_mlp_brulee_two_layer.Rd |only parsnip-1.3.0/parsnip/man/details_multinom_reg_glmnet.Rd | 8 parsnip-1.3.0/parsnip/man/details_nearest_neighbor_kknn.Rd | 3 parsnip-1.3.0/parsnip/man/details_poisson_reg_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_poisson_reg_stan_glmer.Rd | 2 parsnip-1.3.0/parsnip/man/details_rand_forest_aorsf.Rd | 75 parsnip-1.3.0/parsnip/man/details_rand_forest_ranger.Rd | 12 parsnip-1.3.0/parsnip/man/details_survival_reg_flexsurv.Rd | 2 parsnip-1.3.0/parsnip/man/details_survival_reg_flexsurvspline.Rd | 2 parsnip-1.3.0/parsnip/man/details_svm_linear_LiblineaR.Rd | 10 parsnip-1.3.0/parsnip/man/details_svm_linear_kernlab.Rd | 2 parsnip-1.3.0/parsnip/man/details_svm_poly_kernlab.Rd | 2 parsnip-1.3.0/parsnip/man/details_svm_rbf_kernlab.Rd | 2 parsnip-1.3.0/parsnip/man/dot-get_prediction_column_names.Rd |only parsnip-1.3.0/parsnip/man/dot-model_param_name_key.Rd | 1 parsnip-1.3.0/parsnip/man/eval_args.Rd | 2 parsnip-1.3.0/parsnip/man/extract-parsnip.Rd | 14 parsnip-1.3.0/parsnip/man/fit.Rd | 5 parsnip-1.3.0/parsnip/man/format-internals.Rd | 7 parsnip-1.3.0/parsnip/man/glm_grouped.Rd | 2 parsnip-1.3.0/parsnip/man/glmnet_helpers.Rd | 9 parsnip-1.3.0/parsnip/man/keras_activations.Rd |only parsnip-1.3.0/parsnip/man/knit_engine_docs.Rd | 6 parsnip-1.3.0/parsnip/man/matrix_to_quantile_pred.Rd |only parsnip-1.3.0/parsnip/man/model_fit.Rd | 11 parsnip-1.3.0/parsnip/man/model_spec.Rd | 33 parsnip-1.3.0/parsnip/man/multi_predict.Rd | 2 parsnip-1.3.0/parsnip/man/null_model.Rd | 16 parsnip-1.3.0/parsnip/man/other_predict.Rd | 12 parsnip-1.3.0/parsnip/man/parsnip_addin.Rd | 2 parsnip-1.3.0/parsnip/man/parsnip_update.Rd | 2 parsnip-1.3.0/parsnip/man/predict.model_fit.Rd | 2 parsnip-1.3.0/parsnip/man/reexports.Rd | 4 parsnip-1.3.0/parsnip/man/repair_call.Rd | 6 parsnip-1.3.0/parsnip/man/req_pkgs.Rd | 2 parsnip-1.3.0/parsnip/man/required_pkgs.model_spec.Rd | 2 parsnip-1.3.0/parsnip/man/rmd/C5_rules_C5.0.md | 2 parsnip-1.3.0/parsnip/man/rmd/aaa.Rmd | 8 parsnip-1.3.0/parsnip/man/rmd/auto_ml_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/bag_mars_earth.md | 4 parsnip-1.3.0/parsnip/man/rmd/bag_mlp_nnet.md | 4 parsnip-1.3.0/parsnip/man/rmd/bag_tree_C5.0.md | 2 parsnip-1.3.0/parsnip/man/rmd/bag_tree_rpart.md | 6 parsnip-1.3.0/parsnip/man/rmd/bart_dbarts.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/boost_tree_C5.0.md | 2 parsnip-1.3.0/parsnip/man/rmd/boost_tree_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/boost_tree_lightgbm.Rmd | 10 parsnip-1.3.0/parsnip/man/rmd/boost_tree_lightgbm.md | 32 parsnip-1.3.0/parsnip/man/rmd/boost_tree_mboost.md | 2 parsnip-1.3.0/parsnip/man/rmd/boost_tree_spark.md | 4 parsnip-1.3.0/parsnip/man/rmd/boost_tree_xgboost.Rmd | 10 parsnip-1.3.0/parsnip/man/rmd/boost_tree_xgboost.md | 20 parsnip-1.3.0/parsnip/man/rmd/cubist_rules_Cubist.md | 2 parsnip-1.3.0/parsnip/man/rmd/decision_tree_C5.0.md | 2 parsnip-1.3.0/parsnip/man/rmd/decision_tree_partykit.md | 6 parsnip-1.3.0/parsnip/man/rmd/decision_tree_rpart.md | 6 parsnip-1.3.0/parsnip/man/rmd/decision_tree_spark.md | 4 parsnip-1.3.0/parsnip/man/rmd/discrim_flexible_earth.md | 2 parsnip-1.3.0/parsnip/man/rmd/discrim_linear_MASS.md | 2 parsnip-1.3.0/parsnip/man/rmd/discrim_linear_mda.md | 2 parsnip-1.3.0/parsnip/man/rmd/discrim_linear_sda.md | 2 parsnip-1.3.0/parsnip/man/rmd/discrim_linear_sparsediscrim.md | 4 parsnip-1.3.0/parsnip/man/rmd/discrim_quad_MASS.md | 2 parsnip-1.3.0/parsnip/man/rmd/discrim_quad_sparsediscrim.md | 4 parsnip-1.3.0/parsnip/man/rmd/discrim_regularized_klaR.md | 2 parsnip-1.3.0/parsnip/man/rmd/gen_additive_mod_mgcv.md | 8 parsnip-1.3.0/parsnip/man/rmd/glmnet-details.md | 18 parsnip-1.3.0/parsnip/man/rmd/linear_reg_brulee.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_gee.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_glm.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_glmnet.Rmd | 5 parsnip-1.3.0/parsnip/man/rmd/linear_reg_glmnet.md | 7 parsnip-1.3.0/parsnip/man/rmd/linear_reg_gls.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_h2o.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_keras.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_lm.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_lm.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_lme.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_lmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/linear_reg_quantreg.Rmd |only parsnip-1.3.0/parsnip/man/rmd/linear_reg_quantreg.md |only parsnip-1.3.0/parsnip/man/rmd/linear_reg_spark.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_stan.md | 2 parsnip-1.3.0/parsnip/man/rmd/linear_reg_stan_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_LiblineaR.Rmd | 5 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_LiblineaR.md | 7 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_brulee.md | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_gee.html |only parsnip-1.3.0/parsnip/man/rmd/logistic_reg_gee.md | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_glm.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_glm.md | 8 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_glmnet.Rmd | 5 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_glmnet.md | 7 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_keras.md | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_spark.md | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_stan.md | 2 parsnip-1.3.0/parsnip/man/rmd/logistic_reg_stan_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/mars_earth.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/mars_earth.md | 6 parsnip-1.3.0/parsnip/man/rmd/mlp_brulee.Rmd | 30 parsnip-1.3.0/parsnip/man/rmd/mlp_brulee.md | 28 parsnip-1.3.0/parsnip/man/rmd/mlp_brulee_two_layer.Rmd |only parsnip-1.3.0/parsnip/man/rmd/mlp_brulee_two_layer.md |only parsnip-1.3.0/parsnip/man/rmd/mlp_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/mlp_keras.md | 4 parsnip-1.3.0/parsnip/man/rmd/mlp_nnet.md | 4 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_brulee.md | 2 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_glmnet.Rmd | 5 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_glmnet.md | 7 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_h2o.md | 2 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_keras.md | 2 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_nnet.md | 2 parsnip-1.3.0/parsnip/man/rmd/multinom_reg_spark.md | 2 parsnip-1.3.0/parsnip/man/rmd/naive_Bayes_h2o.md | 2 parsnip-1.3.0/parsnip/man/rmd/naive_Bayes_klaR.md | 2 parsnip-1.3.0/parsnip/man/rmd/naive_Bayes_naivebayes.md | 2 parsnip-1.3.0/parsnip/man/rmd/nearest-neighbor.md | 2 parsnip-1.3.0/parsnip/man/rmd/nearest_neighbor_kknn.Rmd | 3 parsnip-1.3.0/parsnip/man/rmd/nearest_neighbor_kknn.md | 7 parsnip-1.3.0/parsnip/man/rmd/null-model.md | 4 parsnip-1.3.0/parsnip/man/rmd/pls_mixOmics.md | 6 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_gee.md | 2 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_glm.md | 2 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_glmnet.md | 2 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_h2o.md | 2 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_hurdle.md | 6 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_stan.md | 2 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_stan_glmer.md | 4 parsnip-1.3.0/parsnip/man/rmd/poisson_reg_zeroinfl.md | 6 parsnip-1.3.0/parsnip/man/rmd/proportional_hazards_glmnet.md | 4 parsnip-1.3.0/parsnip/man/rmd/proportional_hazards_survival.md | 4 parsnip-1.3.0/parsnip/man/rmd/rand_forest_aorsf.Rmd | 33 parsnip-1.3.0/parsnip/man/rmd/rand_forest_aorsf.md | 59 parsnip-1.3.0/parsnip/man/rmd/rand_forest_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/rand_forest_partykit.md | 6 parsnip-1.3.0/parsnip/man/rmd/rand_forest_randomForest.md | 4 parsnip-1.3.0/parsnip/man/rmd/rand_forest_ranger.Rmd | 7 parsnip-1.3.0/parsnip/man/rmd/rand_forest_ranger.md | 11 parsnip-1.3.0/parsnip/man/rmd/rand_forest_spark.md | 4 parsnip-1.3.0/parsnip/man/rmd/rule_fit_h2o.md | 4 parsnip-1.3.0/parsnip/man/rmd/rule_fit_xrf.md | 4 parsnip-1.3.0/parsnip/man/rmd/survival_reg_flexsurv.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/survival_reg_flexsurv.md | 4 parsnip-1.3.0/parsnip/man/rmd/survival_reg_flexsurvspline.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/survival_reg_flexsurvspline.md | 4 parsnip-1.3.0/parsnip/man/rmd/survival_reg_survival.md | 4 parsnip-1.3.0/parsnip/man/rmd/svm_linear_LiblineaR.Rmd | 7 parsnip-1.3.0/parsnip/man/rmd/svm_linear_LiblineaR.md | 11 parsnip-1.3.0/parsnip/man/rmd/svm_linear_kernlab.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/svm_linear_kernlab.md | 6 parsnip-1.3.0/parsnip/man/rmd/svm_poly_kernlab.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/svm_poly_kernlab.md | 6 parsnip-1.3.0/parsnip/man/rmd/svm_rbf_kernlab.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/svm_rbf_kernlab.md | 6 parsnip-1.3.0/parsnip/man/rmd/template-no-pooling.Rmd | 2 parsnip-1.3.0/parsnip/man/rmd/template-uses-sparse-data.Rmd |only parsnip-1.3.0/parsnip/man/set_args.Rd | 15 parsnip-1.3.0/parsnip/man/set_engine.Rd | 4 parsnip-1.3.0/parsnip/man/set_new_model.Rd | 4 parsnip-1.3.0/parsnip/man/show_engines.Rd | 4 parsnip-1.3.0/parsnip/man/sparse_data.Rd |only parsnip-1.3.0/parsnip/man/tidy._LiblineaR.Rd | 4 parsnip-1.3.0/parsnip/man/tidy._elnet.Rd | 4 parsnip-1.3.0/parsnip/man/translate.Rd | 6 parsnip-1.3.0/parsnip/tests/testthat/_snaps/adds.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/args_and_modes.md | 53 parsnip-1.3.0/parsnip/tests/testthat/_snaps/arguments.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/augment.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/boost_tree.md | 63 parsnip-1.3.0/parsnip/tests/testthat/_snaps/boost_tree_C5.0.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/boost_tree_xgboost.md | 73 parsnip-1.3.0/parsnip/tests/testthat/_snaps/condense_control.md | 16 parsnip-1.3.0/parsnip/tests/testthat/_snaps/convert_data.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/decision_tree.md | 22 parsnip-1.3.0/parsnip/tests/testthat/_snaps/descriptors.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/engines.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/extract.md | 36 parsnip-1.3.0/parsnip/tests/testthat/_snaps/failed_models.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/fit_interfaces.md | 44 parsnip-1.3.0/parsnip/tests/testthat/_snaps/gen_additive_model.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/linear_reg.md | 208 ++ parsnip-1.3.0/parsnip/tests/testthat/_snaps/linear_reg_quantreg.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/logistic_reg.md | 158 ++ parsnip-1.3.0/parsnip/tests/testthat/_snaps/mars.md | 47 parsnip-1.3.0/parsnip/tests/testthat/_snaps/misc.md | 70 parsnip-1.3.0/parsnip/tests/testthat/_snaps/mlp.md | 115 + parsnip-1.3.0/parsnip/tests/testthat/_snaps/mlp_keras.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/mlp_nnet.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/model_basics.md | 2 parsnip-1.3.0/parsnip/tests/testthat/_snaps/multinom_reg.md | 104 + parsnip-1.3.0/parsnip/tests/testthat/_snaps/nearest_neighbor.md | 28 parsnip-1.3.0/parsnip/tests/testthat/_snaps/nearest_neighbor_kknn.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/nullmodel.md | 28 parsnip-1.3.0/parsnip/tests/testthat/_snaps/packages.md | 8 parsnip-1.3.0/parsnip/tests/testthat/_snaps/partykit.md | 4 parsnip-1.3.0/parsnip/tests/testthat/_snaps/predict_formats.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/rand_forest.md | 25 parsnip-1.3.0/parsnip/tests/testthat/_snaps/rand_forest_ranger.md | 56 parsnip-1.3.0/parsnip/tests/testthat/_snaps/re_registration.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/registration.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/sparsevctrs.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/surv_reg.md | 39 parsnip-1.3.0/parsnip/tests/testthat/_snaps/surv_reg_flexsurv.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/surv_reg_survreg.md |only parsnip-1.3.0/parsnip/tests/testthat/_snaps/svm_linear.md | 48 parsnip-1.3.0/parsnip/tests/testthat/_snaps/svm_poly.md | 16 parsnip-1.3.0/parsnip/tests/testthat/_snaps/svm_rbf.md | 16 parsnip-1.3.0/parsnip/tests/testthat/_snaps/translate.md | 72 parsnip-1.3.0/parsnip/tests/testthat/_snaps/update.md | 18 parsnip-1.3.0/parsnip/tests/testthat/helper-objects.R | 51 parsnip-1.3.0/parsnip/tests/testthat/test-aaaa.R |only parsnip-1.3.0/parsnip/tests/testthat/test-adds.R |only parsnip-1.3.0/parsnip/tests/testthat/test-args_and_modes.R |only parsnip-1.3.0/parsnip/tests/testthat/test-arguments.R |only parsnip-1.3.0/parsnip/tests/testthat/test-augment.R |only parsnip-1.3.0/parsnip/tests/testthat/test-bag_mars.R |only parsnip-1.3.0/parsnip/tests/testthat/test-bag_mlp.R |only parsnip-1.3.0/parsnip/tests/testthat/test-bag_tree.R |only parsnip-1.3.0/parsnip/tests/testthat/test-bart.R |only parsnip-1.3.0/parsnip/tests/testthat/test-boost_tree.R |only parsnip-1.3.0/parsnip/tests/testthat/test-boost_tree_C5.0.R |only parsnip-1.3.0/parsnip/tests/testthat/test-boost_tree_xgboost.R |only parsnip-1.3.0/parsnip/tests/testthat/test-c5_rules.R |only parsnip-1.3.0/parsnip/tests/testthat/test-case-weights.R | 31 parsnip-1.3.0/parsnip/tests/testthat/test-condense_control.R |only parsnip-1.3.0/parsnip/tests/testthat/test-convert_data.R |only parsnip-1.3.0/parsnip/tests/testthat/test-cubist_rules.R |only parsnip-1.3.0/parsnip/tests/testthat/test-decision_tree.R |only parsnip-1.3.0/parsnip/tests/testthat/test-default_engines.R |only parsnip-1.3.0/parsnip/tests/testthat/test-descriptors.R |only parsnip-1.3.0/parsnip/tests/testthat/test-discrim_flexible.R |only parsnip-1.3.0/parsnip/tests/testthat/test-discrim_linear.R |only parsnip-1.3.0/parsnip/tests/testthat/test-discrim_quad.R |only parsnip-1.3.0/parsnip/tests/testthat/test-discrim_regularized.R |only parsnip-1.3.0/parsnip/tests/testthat/test-engines.R |only parsnip-1.3.0/parsnip/tests/testthat/test-extract.R |only parsnip-1.3.0/parsnip/tests/testthat/test-failed_models.R |only parsnip-1.3.0/parsnip/tests/testthat/test-fit_interfaces.R |only parsnip-1.3.0/parsnip/tests/testthat/test-gen_additive_model.R |only parsnip-1.3.0/parsnip/tests/testthat/test-glm_grouped.R |only parsnip-1.3.0/parsnip/tests/testthat/test-linear_reg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-linear_reg_keras.R |only parsnip-1.3.0/parsnip/tests/testthat/test-linear_reg_quantreg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-logistic_reg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-logistic_reg_keras.R |only parsnip-1.3.0/parsnip/tests/testthat/test-mars.R |only parsnip-1.3.0/parsnip/tests/testthat/test-misc.R |only parsnip-1.3.0/parsnip/tests/testthat/test-mlp.R |only parsnip-1.3.0/parsnip/tests/testthat/test-mlp_keras.R |only parsnip-1.3.0/parsnip/tests/testthat/test-mlp_nnet.R |only parsnip-1.3.0/parsnip/tests/testthat/test-model_basics.R |only parsnip-1.3.0/parsnip/tests/testthat/test-multinom_reg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-multinom_reg_keras.R |only parsnip-1.3.0/parsnip/tests/testthat/test-multinom_reg_nnet.R |only parsnip-1.3.0/parsnip/tests/testthat/test-naive_Bayes.R |only parsnip-1.3.0/parsnip/tests/testthat/test-nearest_neighbor.R |only parsnip-1.3.0/parsnip/tests/testthat/test-nearest_neighbor_kknn.R |only parsnip-1.3.0/parsnip/tests/testthat/test-nullmodel.R |only parsnip-1.3.0/parsnip/tests/testthat/test-packages.R |only parsnip-1.3.0/parsnip/tests/testthat/test-partykit.R |only parsnip-1.3.0/parsnip/tests/testthat/test-pls.R |only parsnip-1.3.0/parsnip/tests/testthat/test-poisson_reg.R | 17 parsnip-1.3.0/parsnip/tests/testthat/test-predict_formats.R |only parsnip-1.3.0/parsnip/tests/testthat/test-print.R |only parsnip-1.3.0/parsnip/tests/testthat/test-proportional_hazards.R |only parsnip-1.3.0/parsnip/tests/testthat/test-rand_forest.R |only parsnip-1.3.0/parsnip/tests/testthat/test-rand_forest_ranger.R |only parsnip-1.3.0/parsnip/tests/testthat/test-re_registration.R |only parsnip-1.3.0/parsnip/tests/testthat/test-registration.R |only parsnip-1.3.0/parsnip/tests/testthat/test-rule_fit.R |only parsnip-1.3.0/parsnip/tests/testthat/test-sparsevctrs.R |only parsnip-1.3.0/parsnip/tests/testthat/test-surv_reg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-surv_reg_flexsurv.R |only parsnip-1.3.0/parsnip/tests/testthat/test-surv_reg_survreg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-survival_reg.R |only parsnip-1.3.0/parsnip/tests/testthat/test-svm_linear.R |only parsnip-1.3.0/parsnip/tests/testthat/test-svm_poly.R |only parsnip-1.3.0/parsnip/tests/testthat/test-svm_rbf.R |only parsnip-1.3.0/parsnip/tests/testthat/test-translate.R |only parsnip-1.3.0/parsnip/tests/testthat/test-tunable.R |only parsnip-1.3.0/parsnip/tests/testthat/test-update.R |only parsnip-1.3.0/parsnip/tests/testthat/test-varying.R |only parsnip-1.3.0/parsnip/vignettes/parsnip.Rmd | 10 476 files changed, 4381 insertions(+), 2131 deletions(-)
Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic
pipelines that query the OMOP (Observational Medical Outcomes Partnership)
common data model.
Author: Marti Catala [aut, cre] ,
Edward Burn [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between omopgenerics versions 0.4.1 dated 2024-12-05 and 1.0.0 dated 2025-02-13
omopgenerics-0.4.1/omopgenerics/man/validateResultArguemnt.Rd |only omopgenerics-1.0.0/omopgenerics/DESCRIPTION | 10 omopgenerics-1.0.0/omopgenerics/MD5 | 118 - omopgenerics-1.0.0/omopgenerics/NAMESPACE | 19 omopgenerics-1.0.0/omopgenerics/R/classAchillesTable.R | 59 omopgenerics-1.0.0/omopgenerics/R/classCdmSource.R | 27 omopgenerics-1.0.0/omopgenerics/R/classCdmTable.R | 57 omopgenerics-1.0.0/omopgenerics/R/classCodelist.R | 87 omopgenerics-1.0.0/omopgenerics/R/classCohortTable.R | 53 omopgenerics-1.0.0/omopgenerics/R/classOmopTable.R | 47 omopgenerics-1.0.0/omopgenerics/R/classSummarisedResult.R | 13 omopgenerics-1.0.0/omopgenerics/R/cohortCodelist.R | 11 omopgenerics-1.0.0/omopgenerics/R/combineStrata.R | 22 omopgenerics-1.0.0/omopgenerics/R/importSummarisedResult.R | 16 omopgenerics-1.0.0/omopgenerics/R/methodCdmDisconnect.R |only omopgenerics-1.0.0/omopgenerics/R/methodDropSourceTable.R | 9 omopgenerics-1.0.0/omopgenerics/R/methodDropTable.R | 68 omopgenerics-1.0.0/omopgenerics/R/methodInsertCdmTo.R |only omopgenerics-1.0.0/omopgenerics/R/methodInsertTable.R | 19 omopgenerics-1.0.0/omopgenerics/R/methodListSourceTables.R | 5 omopgenerics-1.0.0/omopgenerics/R/methodReadSourceTable.R | 23 omopgenerics-1.0.0/omopgenerics/R/methodSuppress.R | 7 omopgenerics-1.0.0/omopgenerics/R/overwriteClasses.R | 1 omopgenerics-1.0.0/omopgenerics/R/recordCohortAttrition.R | 55 omopgenerics-1.0.0/omopgenerics/R/sysdata.rda |binary omopgenerics-1.0.0/omopgenerics/R/unite.R | 12 omopgenerics-1.0.0/omopgenerics/R/utilities.R | 72 omopgenerics-1.0.0/omopgenerics/R/validate.R | 494 ++++- omopgenerics-1.0.0/omopgenerics/inst/doc/codelists.html | 4 omopgenerics-1.0.0/omopgenerics/inst/doc/cohorts.html | 2 omopgenerics-1.0.0/omopgenerics/inst/doc/reexport.Rmd | 6 omopgenerics-1.0.0/omopgenerics/inst/doc/reexport.html | 4 omopgenerics-1.0.0/omopgenerics/inst/doc/summarised_result.html | 880 +++++----- omopgenerics-1.0.0/omopgenerics/man/cdmDisconnect.Rd |only omopgenerics-1.0.0/omopgenerics/man/cohortCodelist.Rd | 2 omopgenerics-1.0.0/omopgenerics/man/combineStrata.Rd | 12 omopgenerics-1.0.0/omopgenerics/man/dropTable.Rd | 41 omopgenerics-1.0.0/omopgenerics/man/insertCdmTo.Rd |only omopgenerics-1.0.0/omopgenerics/man/isResultSuppressed.Rd | 25 omopgenerics-1.0.0/omopgenerics/man/numberRecords.Rd |only omopgenerics-1.0.0/omopgenerics/man/numberSubjects.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateAchillesTable.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateAgeGroupArgument.Rd | 14 omopgenerics-1.0.0/omopgenerics/man/validateCdmArgument.Rd | 30 omopgenerics-1.0.0/omopgenerics/man/validateCdmTable.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateCohortArgument.Rd | 32 omopgenerics-1.0.0/omopgenerics/man/validateCohortIdArgument.Rd | 34 omopgenerics-1.0.0/omopgenerics/man/validateColumn.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateConceptSetArgument.Rd | 16 omopgenerics-1.0.0/omopgenerics/man/validateNameArgument.Rd | 16 omopgenerics-1.0.0/omopgenerics/man/validateNameStyle.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateNewColumn.Rd | 9 omopgenerics-1.0.0/omopgenerics/man/validateOmopTable.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateResultArgument.Rd | 25 omopgenerics-1.0.0/omopgenerics/man/validateStrataArgument.Rd |only omopgenerics-1.0.0/omopgenerics/man/validateWindowArgument.Rd | 13 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-classCdmSource.R | 57 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-classCodelist.R | 14 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-classCohortTable.R | 21 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-combineStrata.R | 2 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-methodCdmDisconnect.R |only omopgenerics-1.0.0/omopgenerics/tests/testthat/test-methodReadSourceTable.R | 3 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-recordCohortAttrition.R | 39 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-unite.R | 30 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-utilities.R | 30 omopgenerics-1.0.0/omopgenerics/tests/testthat/test-validate.R | 31 omopgenerics-1.0.0/omopgenerics/vignettes/reexport.Rmd | 6 67 files changed, 1827 insertions(+), 875 deletions(-)
Title: Analysis of Omics Data in Observational Studies
Description: A collection of fast and flexible functions for analyzing
omics data in observational studies. Multiple different approaches for
integrating multiple environmental/genetic factors, omics data, and/or
phenotype data are implemented. This includes functions for performing
omics wide association studies with one or more variables of interest
as the exposure or outcome; a function for performing a meet in the
middle analysis for linking exposures, omics, and outcomes (as
described by Chadeau-Hyam et al., (2010)
<doi:10.3109/1354750X.2010.533285>); and a function for performing a
mixtures analysis across all omics features using quantile-based
g-Computation (as described by Keil et al., (2019)
<doi:10.1289/EHP5838>).
Author: Jesse Goodrich [aut, cre]
Maintainer: Jesse Goodrich <jagoodri@usc.edu>
Diff between epiomics versions 1.1.0 dated 2024-02-26 and 1.2.0 dated 2025-02-13
epiomics-1.1.0/epiomics/R/depreciated |only epiomics-1.2.0/epiomics/DESCRIPTION | 12 epiomics-1.2.0/epiomics/MD5 | 33 epiomics-1.2.0/epiomics/NAMESPACE | 74 - epiomics-1.2.0/epiomics/NEWS.md | 5 epiomics-1.2.0/epiomics/R/coef_plot_from_owas.R | 255 +-- epiomics-1.2.0/epiomics/R/meet_in_middle.R | 166 +- epiomics-1.2.0/epiomics/R/owas.R | 490 +++---- epiomics-1.2.0/epiomics/R/owas_clogit.R | 298 ++-- epiomics-1.2.0/epiomics/R/owas_qgcomp.R | 335 ++--- epiomics-1.2.0/epiomics/R/volcano_owas.R | 96 - epiomics-1.2.0/epiomics/README.md | 283 ++-- epiomics-1.2.0/epiomics/build/partial.rdb |binary epiomics-1.2.0/epiomics/man/owas.Rd | 7 epiomics-1.2.0/epiomics/man/owas_clogit.Rd | 7 epiomics-1.2.0/epiomics/man/owas_qgcomp.Rd | 7 epiomics-1.2.0/epiomics/tests/testthat/depreciated/test-owas_mixed_effects.R | 650 +++++----- epiomics-1.2.0/epiomics/tests/testthat/test-owas.R | 542 ++++---- 18 files changed, 1694 insertions(+), 1566 deletions(-)
Title: Measure Climate Scenario Alignment of Corporate Loans
Description: These tools help you to assess if a corporate lending
portfolio aligns with climate goals. They summarize key climate
indicators attributed to the portfolio (e.g. production, emission
factors), and calculate alignment targets based on climate scenarios.
They implement in R the last step of the free software 'PACTA' (Paris
Agreement Capital Transition Assessment;
<https://www.transitionmonitor.com/>). Financial institutions use 'PACTA'
to study how their capital allocation decisions align with climate
change mitigation goals.
Author: Jacob Kastl [aut, cre, ctr] ,
Alex Axthelm [aut, ctr] ,
Jackson Hoffart [aut, ctr] ,
Mauro Lepore [aut, ctr] ,
Klaus Hogedorn [aut],
Nicky Halterman [aut],
RMI [cph, fnd]
Maintainer: Jacob Kastl <jacob.kastl@gmail.com>
Diff between r2dii.analysis versions 0.4.0 dated 2024-03-26 and 0.5.0 dated 2025-02-13
DESCRIPTION | 33 +- MD5 | 31 +- NEWS.md | 282 +++++++++++--------- R/data_dictionary.R |only R/join_abcd_scenario.R | 16 - R/summarize_weighted_production.R | 14 R/target_market_share.R | 2 README.md | 66 ---- data |only inst/WORDLIST | 7 man/data_dictionary.Rd |only man/join_abcd_scenario.Rd | 8 man/r2dii.analysis-package.Rd | 7 man/summarize_weighted_production.Rd | 10 tests/testthat/test-join_abcd_scenario.R | 14 tests/testthat/test-summarize_weighted_production.R | 18 + tests/testthat/test-target_market_share.R | 130 +++++++++ tests/testthat/test-target_sda.R | 23 + 18 files changed, 434 insertions(+), 227 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions.
Non-constant errors can be taken into account using variance by variable or
two-component error models <doi:10.3390/environments6120124>. Hierarchical
degradation models can be fitted using nonlinear mixed-effects model packages
as a back end <doi:10.3390/environments8080071>. Please
note that no warranty is implied for correctness of results or fitness for a
particular purpose.
Author: Johannes Ranke [aut, cre, cph]
,
Katrin Lindenberger [ctb] ),
Rene Lehmann [ctb] and invilr),
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>
Diff between mkin versions 1.2.6 dated 2023-10-14 and 1.2.9 dated 2025-02-13
DESCRIPTION | 21 MD5 | 95 +- NAMESPACE | 1 NEWS.md | 20 R/create_deg_func.R | 38 - R/illparms.R | 10 R/mhmkin.R | 28 R/mkinfit.R | 6 R/mkinpredict.R | 4 R/multistart.R | 4 R/nlme.R | 2 R/parplot.R | 19 R/plot.mixed.mmkin.R | 2 R/status.R | 18 README.md | 26 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 310 ++++++--- inst/doc/FOCUS_D.R | 2 inst/doc/FOCUS_D.html | 16 inst/doc/FOCUS_L.R | 2 inst/doc/FOCUS_L.html | 163 ++-- inst/doc/cyan_pathway_2022_prebuilt.pdf |only inst/doc/cyan_pathway_2022_prebuilt.rnw |only inst/doc/dmta_parent_2022_prebuilt.pdf |binary inst/doc/dmta_pathway_2022_prebuilt.pdf |binary inst/doc/mesotrione_parent_2023_prebuilt.pdf |binary inst/doc/mkin.R | 4 inst/doc/mkin.html | 4 inst/doc/twa.html | 2 inst/testdata/active_substance_medium_source_year.xlsx |only man/check_failed.Rd |only man/hierarchical_kinetics.Rd | 6 man/mkinfit.Rd | 3 man/mkinpredict.Rd | 4 man/multistart.Rd | 4 man/nlme.Rd | 2 man/plot.mixed.mmkin.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/multistart/parplot-for-dfop-sfo-fit.svg | 339 +++++----- tests/testthat/print_dfop_saem_1.txt | 2 tests/testthat/summary_hfit_sfo_tc.txt | 4 tests/testthat/summary_saem_dfop_sfo_s.txt | 2 tests/testthat/test_mixed.R | 2 tests/testthat/test_multistart.R | 9 tests/testthat/test_saemix_parent.R | 27 tests/testthat/test_water-sediment.R |only vignettes/cyan_pathway_2022_prebuilt.rnw |only vignettes/prebuilt/2022_cyan_pathway.pdf |binary vignettes/prebuilt/2022_cyan_pathway.rmd | 23 vignettes/prebuilt/2022_dmta_parent.pdf |binary vignettes/prebuilt/2022_dmta_pathway.pdf |binary 52 files changed, 732 insertions(+), 494 deletions(-)
Title: Automatic Interpolation Package
Description: An automatic interpolation is done by automatically estimating the variogram and then calling gstat. An overview is given by Hiemstra et al (2008) <doi:10.1016/j.cageo.2008.10.011>.
Author: Paul Hiemstra [aut],
Jon Olav Skoien [aut, cre]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between automap versions 1.1-12 dated 2024-09-03 and 1.1-16 dated 2025-02-13
DESCRIPTION | 8 MD5 | 10 R/summary.autoKrige.r | 2 tests/autoKrige.cv.Rout.save | 4 tests/automap.R | 3 tests/automap.Rout.save | 606 +++++++++++++++++++++---------------------- 6 files changed, 321 insertions(+), 312 deletions(-)
Title: Linked Micromap Plots for U. S. and Other Geographic Areas
Description: Provides the users with the ability to quickly create
linked micromap plots for a collection of geographic areas.
Linked micromap plots are visualizations of geo-referenced data
that link statistical graphics to an organized series of small
maps or graphic images. The Help description contains examples
of how to use the 'micromapST' function. Contained in this
package are border group datasets to support creating linked
micromap plots for the 50 U.S. states and District of Columbia
(51 areas), the U. S. 20 Seer Registries, the 105 counties in
the state of Kansas, the 62 counties of New York, the 24
counties of Maryland, the 29 counties of Utah, the 32
administrative areas in China, the 218 administrative areas in
the UK and Ireland (for testing only), the 25 districts in the
city of Seoul South Korea, and the 52 counties on the Africa
continent.
A border group dataset contains the boundaries related to the
data level areas, a second layer boundaries, a top or third
layer boundary, a pa [...truncated...]
Author: Jim Pearson [aut, cre, cph],
Dan Carr [aut, cph],
Linda Pickle [ctb, cph]
Maintainer: Jim Pearson <jbpearson353@gmail.com>
Diff between micromapST versions 3.0.4 dated 2024-10-26 and 3.1.0 dated 2025-02-13
micromapST-3.0.4/micromapST/inst/doc/NEWS |only micromapST-3.1.0/micromapST/DESCRIPTION | 11 micromapST-3.1.0/micromapST/MD5 | 108 - micromapST-3.1.0/micromapST/NAMESPACE | 6 micromapST-3.1.0/micromapST/NEWS |only micromapST-3.1.0/micromapST/R/BuildBorderGroup.r | 10 micromapST-3.1.0/micromapST/R/globals.r | 38 micromapST-3.1.0/micromapST/R/micromapDefSets.r | 73 - micromapST-3.1.0/micromapST/R/micromapST.r | 1027 ++++++++++------ micromapST-3.1.0/micromapST/R/panelFunctions.r | 12 micromapST-3.1.0/micromapST/build/vignette.rds |binary micromapST-3.1.0/micromapST/data/AfricaBG.rda |binary micromapST-3.1.0/micromapST/data/AfricaPopData.rda |binary micromapST-3.1.0/micromapST/data/ChinaBG.rda |binary micromapST-3.1.0/micromapST/data/Educ8thData.rda |binary micromapST-3.1.0/micromapST/data/KansPopInc.rda |binary micromapST-3.1.0/micromapST/data/KansasBG.rda |binary micromapST-3.1.0/micromapST/data/LOWESSData.rda |only micromapST-3.1.0/micromapST/data/MarylandBG.rda |binary micromapST-3.1.0/micromapST/data/NewYorkBG.rda |binary micromapST-3.1.0/micromapST/data/Seer18Area.rda |binary micromapST-3.1.0/micromapST/data/SeoulPopData.rda |binary micromapST-3.1.0/micromapST/data/SeoulSKoreaBG.rda |binary micromapST-3.1.0/micromapST/data/SynTable.rda |binary micromapST-3.1.0/micromapST/data/TSdata.rda |binary micromapST-3.1.0/micromapST/data/UKIrelandBG.rda |binary micromapST-3.1.0/micromapST/data/UKIrelandPopData.rda |binary micromapST-3.1.0/micromapST/data/UKIrelandPopData2.rda |binary micromapST-3.1.0/micromapST/data/USSeerBG.rda |binary micromapST-3.1.0/micromapST/data/USStatesBG.rda |binary micromapST-3.1.0/micromapST/data/UtahBG.rda |binary micromapST-3.1.0/micromapST/data/UtahPopData.rda |binary micromapST-3.1.0/micromapST/data/cnPopData.rda |binary micromapST-3.1.0/micromapST/data/detailsVariables.rda |binary micromapST-3.1.0/micromapST/data/mdPopData.rda |binary micromapST-3.1.0/micromapST/data/nyPopData.rda |binary micromapST-3.1.0/micromapST/data/statePop2010.rda |binary micromapST-3.1.0/micromapST/data/wflung00and95.rda |binary micromapST-3.1.0/micromapST/data/wflung00and95US.rda |binary micromapST-3.1.0/micromapST/data/wflung00cnty.rda |binary micromapST-3.1.0/micromapST/data/wmlung5070.rda |binary micromapST-3.1.0/micromapST/data/wmlung5070US.rda |binary micromapST-3.1.0/micromapST/man/LOWESSData.Rd |only micromapST-3.1.0/micromapST/man/X-Axis.Rd |only micromapST-3.1.0/micromapST/man/glyph-TS.Rd |only micromapST-3.1.0/micromapST/man/glyph-arrow.rd |only micromapST-3.1.0/micromapST/man/glyph-bar.rd |only micromapST-3.1.0/micromapST/man/glyph-boxplot.rd |only micromapST-3.1.0/micromapST/man/glyph-ctrbar.rd |only micromapST-3.1.0/micromapST/man/glyph-dot.rd |only micromapST-3.1.0/micromapST/man/glyph-dotconf.rd |only micromapST-3.1.0/micromapST/man/glyph-dotse.rd |only micromapST-3.1.0/micromapST/man/glyph-dotsignif.rd |only micromapST-3.1.0/micromapST/man/glyph-id.rd |only micromapST-3.1.0/micromapST/man/glyph-mapXXXX.rd |only micromapST-3.1.0/micromapST/man/glyph-normbar.Rd |only micromapST-3.1.0/micromapST/man/glyph-rank.Rd |only micromapST-3.1.0/micromapST/man/glyph-scatdot.Rd |only micromapST-3.1.0/micromapST/man/glyph-segbar.Rd |only micromapST-3.1.0/micromapST/man/messages-MM.Rd | 219 ++- micromapST-3.1.0/micromapST/man/micromapGSetPanelDef.Rd | 8 micromapST-3.1.0/micromapST/man/micromapSEER.Rd | 4 micromapST-3.1.0/micromapST/man/micromapST-package.Rd | 9 micromapST-3.1.0/micromapST/man/micromapST.Rd | 26 micromapST-3.1.0/micromapST/man/panelDesc.Rd | 12 65 files changed, 1025 insertions(+), 538 deletions(-)
Title: Light Gradient Boosting Machine
Description: Tree based algorithms can be improved by introducing boosting frameworks.
'LightGBM' is one such framework, based on Ke, Guolin et al. (2017) <https://papers.nips.cc/paper/6907-lightgbm-a-highly-efficient-gradient-boosting-decision>.
This package offers an R interface to work with it.
It is designed to be distributed and efficient with the following advantages:
1. Faster training speed and higher efficiency.
2. Lower memory usage.
3. Better accuracy.
4. Parallel learning supported.
5. Capable of handling large-scale data.
In recognition of these advantages, 'LightGBM' has been widely-used in many winning solutions of machine learning competitions.
Comparison experiments on public datasets suggest that 'LightGBM' can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, 'LightGBM' can achieve a linear speed-up in training time by using multiple m [...truncated...]
Author: Yu Shi [aut],
Guolin Ke [aut],
Damien Soukhavong [aut],
James Lamb [aut, cre],
Qi Meng [aut],
Thomas Finley [aut],
Taifeng Wang [aut],
Wei Chen [aut],
Weidong Ma [aut],
Qiwei Ye [aut],
Tie-Yan Liu [aut],
Nikita Titov [aut],
Yachen Yan [ctb],
Microsof [...truncated...]
Maintainer: James Lamb <jaylamb20@gmail.com>
Diff between lightgbm versions 4.5.0 dated 2024-07-26 and 4.6.0 dated 2025-02-13
lightgbm-4.5.0/lightgbm/src/treelearner/kernels |only lightgbm-4.6.0/lightgbm/DESCRIPTION | 8 lightgbm-4.6.0/lightgbm/MD5 | 207 lightgbm-4.6.0/lightgbm/R/callback.R | 2 lightgbm-4.6.0/lightgbm/R/lgb.Booster.R | 4 lightgbm-4.6.0/lightgbm/R/lgb.Dataset.R | 2 lightgbm-4.6.0/lightgbm/R/lgb.convert_with_rules.R | 2 lightgbm-4.6.0/lightgbm/R/lgb.cv.R | 67 lightgbm-4.6.0/lightgbm/R/lgb.importance.R | 2 lightgbm-4.6.0/lightgbm/R/lgb.model.dt.tree.R | 2 lightgbm-4.6.0/lightgbm/R/lgb.train.R | 40 lightgbm-4.6.0/lightgbm/R/lightgbm.R | 2 lightgbm-4.6.0/lightgbm/R/utils.R | 24 lightgbm-4.6.0/lightgbm/README.md | 20 lightgbm-4.6.0/lightgbm/build/vignette.rds |binary lightgbm-4.6.0/lightgbm/configure | 26 lightgbm-4.6.0/lightgbm/configure.ac | 10 lightgbm-4.6.0/lightgbm/demo/cross_validation.R | 2 lightgbm-4.6.0/lightgbm/demo/early_stopping.R | 2 lightgbm-4.6.0/lightgbm/inst/doc/basic_walkthrough.Rmd | 2 lightgbm-4.6.0/lightgbm/inst/doc/basic_walkthrough.html | 2 lightgbm-4.6.0/lightgbm/man/lgb.configure_fast_predict.Rd | 4 lightgbm-4.6.0/lightgbm/man/lgb.cv.Rd | 20 lightgbm-4.6.0/lightgbm/man/lgb.importance.Rd | 2 lightgbm-4.6.0/lightgbm/man/lgb.model.dt.tree.Rd | 2 lightgbm-4.6.0/lightgbm/man/lgb.train.Rd | 14 lightgbm-4.6.0/lightgbm/man/lightgbm.Rd | 2 lightgbm-4.6.0/lightgbm/src/boosting/bagging.hpp | 95 lightgbm-4.6.0/lightgbm/src/boosting/gbdt.cpp | 19 lightgbm-4.6.0/lightgbm/src/boosting/gbdt.h | 13 lightgbm-4.6.0/lightgbm/src/boosting/gbdt_model_text.cpp | 6 lightgbm-4.6.0/lightgbm/src/boosting/rf.hpp | 2 lightgbm-4.6.0/lightgbm/src/c_api.cpp | 17 lightgbm-4.6.0/lightgbm/src/include/LightGBM/bin.h | 1 lightgbm-4.6.0/lightgbm/src/include/LightGBM/c_api.h | 4 lightgbm-4.6.0/lightgbm/src/include/LightGBM/config.h | 73 lightgbm-4.6.0/lightgbm/src/include/LightGBM/cuda/cuda_algorithms.hpp | 6 lightgbm-4.6.0/lightgbm/src/include/LightGBM/cuda/cuda_column_data.hpp | 1 lightgbm-4.6.0/lightgbm/src/include/LightGBM/cuda/cuda_objective_function.hpp | 5 lightgbm-4.6.0/lightgbm/src/include/LightGBM/cuda/cuda_row_data.hpp | 1 lightgbm-4.6.0/lightgbm/src/include/LightGBM/cuda/cuda_tree.hpp | 2 lightgbm-4.6.0/lightgbm/src/include/LightGBM/dataset.h | 3 lightgbm-4.6.0/lightgbm/src/include/LightGBM/feature_group.h | 1 lightgbm-4.6.0/lightgbm/src/include/LightGBM/objective_function.h | 11 lightgbm-4.6.0/lightgbm/src/include/LightGBM/sample_strategy.h | 4 lightgbm-4.6.0/lightgbm/src/include/LightGBM/train_share_states.h | 1 lightgbm-4.6.0/lightgbm/src/include/LightGBM/tree.h | 6 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/common.h | 4 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fast_double_parser.h | 18 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/args.h | 172 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/base.h |only lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/chrono.h | 1402 ++-- lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/color.h | 264 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/compile.h | 169 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/core.h | 2925 -------- lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/format-inl.h | 527 + lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/format.h | 3256 ++++------ lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/os.h | 294 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/ostream.h | 189 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/printf.h | 424 - lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/ranges.h | 615 + lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/std.h | 587 + lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/fmt/xchar.h | 273 lightgbm-4.6.0/lightgbm/src/include/LightGBM/utils/random.h | 4 lightgbm-4.6.0/lightgbm/src/io/config.cpp | 11 lightgbm-4.6.0/lightgbm/src/io/config_auto.cpp | 8 lightgbm-4.6.0/lightgbm/src/io/cuda/cuda_column_data.cpp | 2 lightgbm-4.6.0/lightgbm/src/io/cuda/cuda_tree.cpp | 5 lightgbm-4.6.0/lightgbm/src/io/cuda/cuda_tree.cu | 4 lightgbm-4.6.0/lightgbm/src/io/json11.cpp | 1 lightgbm-4.6.0/lightgbm/src/io/metadata.cpp | 6 lightgbm-4.6.0/lightgbm/src/io/tree.cpp | 21 lightgbm-4.6.0/lightgbm/src/network/linker_topo.cpp | 4 lightgbm-4.6.0/lightgbm/src/network/linkers_socket.cpp | 3 lightgbm-4.6.0/lightgbm/src/objective/rank_objective.hpp | 22 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_best_split_finder.cpp | 2 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_data_partition.cu | 18 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_data_partition.hpp | 18 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_histogram_constructor.cpp | 2 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_histogram_constructor.hpp | 2 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_leaf_splits.cpp | 15 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_leaf_splits.cu | 16 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_leaf_splits.hpp | 10 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_single_gpu_tree_learner.cpp | 26 lightgbm-4.6.0/lightgbm/src/treelearner/cuda/cuda_single_gpu_tree_learner.hpp | 4 lightgbm-4.6.0/lightgbm/src/treelearner/data_parallel_tree_learner.cpp | 6 lightgbm-4.6.0/lightgbm/src/treelearner/feature_histogram.hpp | 6 lightgbm-4.6.0/lightgbm/src/treelearner/gpu_tree_learner.cpp | 2 lightgbm-4.6.0/lightgbm/src/treelearner/linear_tree_learner.cpp | 112 lightgbm-4.6.0/lightgbm/src/treelearner/linear_tree_learner.h | 16 lightgbm-4.6.0/lightgbm/src/treelearner/ocl/histogram16.cl | 4 lightgbm-4.6.0/lightgbm/src/treelearner/ocl/histogram256.cl | 2 lightgbm-4.6.0/lightgbm/src/treelearner/ocl/histogram64.cl | 2 lightgbm-4.6.0/lightgbm/src/treelearner/parallel_tree_learner.h | 10 lightgbm-4.6.0/lightgbm/src/treelearner/serial_tree_learner.cpp | 20 lightgbm-4.6.0/lightgbm/src/treelearner/split_info.hpp | 2 lightgbm-4.6.0/lightgbm/src/treelearner/tree_learner.cpp | 8 lightgbm-4.6.0/lightgbm/src/treelearner/voting_parallel_tree_learner.cpp | 12 lightgbm-4.6.0/lightgbm/tests/testthat/test_basic.R | 14 lightgbm-4.6.0/lightgbm/tests/testthat/test_custom_objective.R | 2 lightgbm-4.6.0/lightgbm/tests/testthat/test_lgb.Booster.R | 12 lightgbm-4.6.0/lightgbm/tests/testthat/test_lgb.interprete.R | 2 lightgbm-4.6.0/lightgbm/tests/testthat/test_lgb.plot.interpretation.R | 4 lightgbm-4.6.0/lightgbm/tests/testthat/test_parameters.R | 63 lightgbm-4.6.0/lightgbm/vignettes/basic_walkthrough.Rmd | 2 105 files changed, 5042 insertions(+), 7323 deletions(-)
Title: 'CASMI'-Based Functions
Description: Contains Coverage Adjusted Standardized Mutual Information ('CASMI')-based functions. 'CASMI' is a fundamental concept of a series of methods. For more information about 'CASMI' and 'CASMI'-related methods, please refer to the corresponding publications (e.g., a feature selection method, Shi, J., Zhang, J., & Ge, Y. (2019) <doi:10.3390/e21121179>, and a dataset quality measurement method, Shi, J., Zhang, J., & Ge, Y. (2019) <doi:10.1109/ICHI.2019.8904553>) or contact the package author for the latest updates.
Author: Jingyi Shi [aut, cre, cph, ctb],
Shirli Arndt [aut],
Jialin Zhang [ctb]
Maintainer: Jingyi (Catherine) Shi <jshi@math.msstate.edu>
Diff between CASMI versions 1.2.2 dated 2024-02-16 and 2.0.0 dated 2025-02-13
DESCRIPTION | 12 - MD5 | 19 +- NAMESPACE | 4 R/AQI.R | 16 - R/AutoBin_Binary.R | 80 ++++++-- R/CombinationMining.R |only R/CommonFunctions.R |only R/FeatureSelection.R | 388 ++++++++++++------------------------------- man/AQI.Rd | 12 - man/CASMI.mineCombination.Rd |only man/CASMI.selectFeatures.Rd | 98 ++++++---- man/autoBin.binary.Rd | 32 ++- 12 files changed, 288 insertions(+), 373 deletions(-)
Title: Tidy Analysis of Wikipedia
Description: Access 'Wikipedia' through the several 'MediaWiki' APIs
(<https://www.mediawiki.org/wiki/API>), as well as through the
'XTools' API (<https://www.mediawiki.org/wiki/XTools/API>). Ensure
your API calls are correct, and receive results in tidy tibbles.
Author: Michael Falk [aut, cre, cph]
Maintainer: Michael Falk <michaelgfalk@gmail.com>
Diff between wikkitidy versions 0.1.13 dated 2024-08-17 and 0.1.14 dated 2025-02-13
wikkitidy-0.1.13/wikkitidy/R/wiki-xml.R |only wikkitidy-0.1.13/wikkitidy/inst/extdata/akwiki-20230301-pages-articles-multistream-index.txt.bz2 |only wikkitidy-0.1.13/wikkitidy/inst/extdata/akwiki-20230301-pages-articles-multistream.xml.bz2 |only wikkitidy-0.1.13/wikkitidy/tests/testthat/test-wiki-xml.R |only wikkitidy-0.1.14/wikkitidy/DESCRIPTION | 13 +- wikkitidy-0.1.14/wikkitidy/MD5 | 55 +++++---- wikkitidy-0.1.14/wikkitidy/NAMESPACE | 2 wikkitidy-0.1.14/wikkitidy/NEWS.md | 8 + wikkitidy-0.1.14/wikkitidy/R/aa_setup.R |only wikkitidy-0.1.14/wikkitidy/R/get-history-count.R | 17 ++ wikkitidy-0.1.14/wikkitidy/R/get-page-data.R | 58 +++------- wikkitidy-0.1.14/wikkitidy/R/get-rest-resource.R | 10 + wikkitidy-0.1.14/wikkitidy/R/request-gracefully.R | 2 wikkitidy-0.1.14/wikkitidy/R/wikkitidy-example.R | 7 - wikkitidy-0.1.14/wikkitidy/R/xml-collect-pages.R |only wikkitidy-0.1.14/wikkitidy/R/xml-filter-pages.R |only wikkitidy-0.1.14/wikkitidy/R/xml-generate-pages.R |only wikkitidy-0.1.14/wikkitidy/R/xml-get-articles-by-title.R |only wikkitidy-0.1.14/wikkitidy/R/xml-verify-file.R |only wikkitidy-0.1.14/wikkitidy/R/xtools-page-api.R | 4 wikkitidy-0.1.14/wikkitidy/README.md | 16 +- wikkitidy-0.1.14/wikkitidy/inst/extdata/fatwiki-20240920-pages-articles-multistream-index.txt |only wikkitidy-0.1.14/wikkitidy/inst/extdata/fatwiki-20240920-pages-articles-multistream-index.txt.bz2 |only wikkitidy-0.1.14/wikkitidy/inst/extdata/fatwiki-20240920-pages-articles-multistream.xml.bz2 |only wikkitidy-0.1.14/wikkitidy/man/get_history_count.Rd | 15 ++ wikkitidy-0.1.14/wikkitidy/man/get_rest_resource.Rd | 7 + wikkitidy-0.1.14/wikkitidy/man/gracefully.Rd | 1 wikkitidy-0.1.14/wikkitidy/man/page_vector_functions.Rd | 32 +---- wikkitidy-0.1.14/wikkitidy/man/verify_xml_integrity.Rd | 3 wikkitidy-0.1.14/wikkitidy/man/wikkitidy_example.Rd | 3 wikkitidy-0.1.14/wikkitidy/man/xtools_page.Rd | 8 - wikkitidy-0.1.14/wikkitidy/tests/testthat/test-get-page-data.R | 4 wikkitidy-0.1.14/wikkitidy/tests/testthat/test-rest-request.R | 7 - wikkitidy-0.1.14/wikkitidy/tests/testthat/test-wikkitidy-example.R | 8 - wikkitidy-0.1.14/wikkitidy/tests/testthat/test-xml-get-articles-by-title.R |only wikkitidy-0.1.14/wikkitidy/tests/testthat/test-xml-verify-file.R |only 36 files changed, 140 insertions(+), 140 deletions(-)
Title: Connect to Your 'Revenera' (Formerly 'Revulytics') Data
Description: Facilitates making a connection to the 'Revenera'
API and executing various queries. You can use it to get
event data and metadata. The 'Revenera' documentation
is available at <https://rui-api.redoc.ly/>. This package is
not supported by 'Flexera' (owner of the software).
Author: Chris Umphlett [aut, cre],
Avinash Panigrahi [aut]
Maintainer: Chris Umphlett <christopher.umphlett@gmail.com>
Diff between reveneraR versions 0.1.2 dated 2022-08-06 and 1.0.0 dated 2025-02-13
reveneraR-0.1.2/reveneraR/R/get_active_users.R |only reveneraR-0.1.2/reveneraR/R/get_new_users.R |only reveneraR-0.1.2/reveneraR/man/get_active_users.Rd |only reveneraR-0.1.2/reveneraR/man/get_new_users.Rd |only reveneraR-1.0.0/reveneraR/DESCRIPTION | 27 - reveneraR-1.0.0/reveneraR/MD5 | 44 -- reveneraR-1.0.0/reveneraR/NAMESPACE | 14 reveneraR-1.0.0/reveneraR/NEWS.md | 15 reveneraR-1.0.0/reveneraR/R/get_categories_and_events.R | 55 +- reveneraR-1.0.0/reveneraR/R/get_client_metadata.R | 207 ++++----- reveneraR-1.0.0/reveneraR/R/get_daily_client_properties.R | 241 ++++------- reveneraR-1.0.0/reveneraR/R/get_product_properties.R | 52 -- reveneraR-1.0.0/reveneraR/R/get_raw_data_files.R | 87 +-- reveneraR-1.0.0/reveneraR/R/get_users.R | 69 +-- reveneraR-1.0.0/reveneraR/R/logout.R |only reveneraR-1.0.0/reveneraR/R/revenera_auth.R | 43 + reveneraR-1.0.0/reveneraR/R/utils.R | 12 reveneraR-1.0.0/reveneraR/README.md | 24 - reveneraR-1.0.0/reveneraR/man/get_categories_and_events.Rd | 13 reveneraR-1.0.0/reveneraR/man/get_client_metadata.Rd | 23 - reveneraR-1.0.0/reveneraR/man/get_daily_client_properties.Rd | 34 - reveneraR-1.0.0/reveneraR/man/get_product_properties.Rd | 16 reveneraR-1.0.0/reveneraR/man/get_raw_data_files.Rd | 25 - reveneraR-1.0.0/reveneraR/man/get_users.Rd | 17 reveneraR-1.0.0/reveneraR/man/logout.Rd |only reveneraR-1.0.0/reveneraR/man/revenera_auth.Rd | 14 26 files changed, 484 insertions(+), 548 deletions(-)
Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre],
Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotRgui versions 6.4 dated 2024-10-19 and 6.5 dated 2025-02-13
DESCRIPTION | 10 ++--- MD5 | 18 +++++----- R/IsoplotR.R | 19 +++++++--- inst/www/home/news.html | 55 +++++++++++++++---------------- inst/www/js/IsoplotR.js | 14 +++---- inst/www/locales/en/contextual_help.json | 2 - inst/www/locales/en/dictionary_id.json | 6 +-- inst/www/locales/en/home_id.json | 2 - inst/www/options/concordia.html | 27 ++++++++++++++- inst/www/version.txt | 2 - 10 files changed, 94 insertions(+), 61 deletions(-)
Title: qPCR Data Analysis
Description: Various methods are employed for statistical analysis and graphical presentation of real-time PCR (quantitative PCR or qPCR) data. 'rtpcr' handles amplification efficiency calculation, statistical analysis and graphical representation of real-time PCR data based on up to two reference genes. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor), analysis of variance (ANOVA), analysis of covariance (ANCOVA) or analysis of repeated measure data to calculate the fold change (FC, Delta Delta Ct method) or relative expression (RE, Delta Ct method). The functions further provide standard errors and confidence intervals for means, a [...truncated...]
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 2.0.0 dated 2024-07-07 and 2.0.1 dated 2025-02-13
COPYING |only DESCRIPTION | 6 +++--- MD5 | 16 +++++++++------- R/qpcrANOVAFC.r | 16 ++++++++-------- inst/doc/vignette.R | 2 +- inst/doc/vignette.Rmd | 12 ++++++------ inst/doc/vignette.html | 18 +++++++++--------- man/figures |only man/qpcrANOVAFC.Rd | 16 ++++++++-------- vignettes/vignette.Rmd | 12 ++++++------ 10 files changed, 50 insertions(+), 48 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support Summary and Analysis of
Extension Program Evaluation in R, and An R
Companion for the Handbook of Biological Statistics.
Vignettes are available at <https://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.36 dated 2024-05-27 and 2.5.0 dated 2025-02-13
DESCRIPTION | 18 +++++++++--------- MD5 | 30 ++++++++++++++++-------------- NAMESPACE | 5 +++++ NEWS.md | 8 ++++++++ R/blom.r | 6 ++++++ R/correlation.r |only R/epsilonSquared.r | 6 ++++++ R/groupwiseMean.r | 8 ++++---- R/groupwisePercentile.r | 8 ++++---- R/ordinalEtaSquared.r | 15 ++++++++++----- inst/CITATION | 8 ++++---- man/blom.Rd | 7 +++++++ man/correlation.Rd |only man/epsilonSquared.Rd | 7 +++++++ man/groupwiseMean.Rd | 8 ++++---- man/groupwisePercentile.Rd | 8 ++++---- man/ordinalEtaSquared.Rd | 16 +++++++++++----- 17 files changed, 105 insertions(+), 53 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grant 80NSSC19M0161 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb],
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb],
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.1.4.2 dated 2024-10-21 and 1.2 dated 2025-02-13
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Colossus-1.2/Colossus/build/vignette.rds |binary Colossus-1.2/Colossus/inst/WORDLIST | 73 Colossus-1.2/Colossus/inst/doc/Alt_Run_Opt.R | 140 Colossus-1.2/Colossus/inst/doc/Alt_Run_Opt.Rmd | 38 Colossus-1.2/Colossus/inst/doc/Alt_Run_Opt.html | 157 Colossus-1.2/Colossus/inst/doc/Control_Options.Rmd | 9 Colossus-1.2/Colossus/inst/doc/Control_Options.html | 12 Colossus-1.2/Colossus/inst/doc/Equation_Expression.R |only Colossus-1.2/Colossus/inst/doc/Equation_Expression.Rmd |only Colossus-1.2/Colossus/inst/doc/Equation_Expression.html |only Colossus-1.2/Colossus/inst/doc/Excess_and_Predicted_Cases.R | 35 Colossus-1.2/Colossus/inst/doc/Excess_and_Predicted_Cases.Rmd | 5 Colossus-1.2/Colossus/inst/doc/Excess_and_Predicted_Cases.html | 19 Colossus-1.2/Colossus/inst/doc/Grad_Hess.R |only Colossus-1.2/Colossus/inst/doc/Grad_Hess.Rmd |only Colossus-1.2/Colossus/inst/doc/Grad_Hess.html |only Colossus-1.2/Colossus/inst/doc/Multi_Realization.R | 11 Colossus-1.2/Colossus/inst/doc/Multi_Realization.Rmd | 17 Colossus-1.2/Colossus/inst/doc/Multi_Realization.html | 19 Colossus-1.2/Colossus/inst/doc/Plotting_And_Analysis.R | 23 Colossus-1.2/Colossus/inst/doc/Plotting_And_Analysis.Rmd | 23 Colossus-1.2/Colossus/inst/doc/Plotting_And_Analysis.html | 101 Colossus-1.2/Colossus/inst/doc/SMR_Analysis.R |only Colossus-1.2/Colossus/inst/doc/SMR_Analysis.Rmd |only Colossus-1.2/Colossus/inst/doc/SMR_Analysis.html |only Colossus-1.2/Colossus/inst/doc/Script_Comparison_Epicure.R | 54 Colossus-1.2/Colossus/inst/doc/Script_Comparison_Epicure.Rmd | 16 Colossus-1.2/Colossus/inst/doc/Script_Comparison_Epicure.html | 32 Colossus-1.2/Colossus/inst/doc/Starting-Description.R | 11 Colossus-1.2/Colossus/inst/doc/Starting-Description.Rmd | 44 Colossus-1.2/Colossus/inst/doc/Starting-Description.html | 195 Colossus-1.2/Colossus/inst/doc/Wald_and_Log_Bound.R | 210 Colossus-1.2/Colossus/inst/doc/Wald_and_Log_Bound.Rmd | 323 Colossus-1.2/Colossus/inst/doc/Wald_and_Log_Bound.html | 345 Colossus-1.2/Colossus/inst/doc/count_time_tables.R |only Colossus-1.2/Colossus/inst/doc/count_time_tables.Rmd |only Colossus-1.2/Colossus/inst/doc/count_time_tables.html |only Colossus-1.2/Colossus/man/Check_Dupe_Columns.Rd | 3 Colossus-1.2/Colossus/man/Check_Trunc.Rd | 3 Colossus-1.2/Colossus/man/Check_Verbose.Rd | 3 Colossus-1.2/Colossus/man/Convert_Model_Eq.Rd |only Colossus-1.2/Colossus/man/Correct_Formula_Order.Rd | 3 Colossus-1.2/Colossus/man/CoxCurveSolver.Rd |only Colossus-1.2/Colossus/man/Date_Shift.Rd | 3 Colossus-1.2/Colossus/man/Def_Control.Rd | 3 Colossus-1.2/Colossus/man/Def_Control_Guess.Rd | 3 Colossus-1.2/Colossus/man/Def_model_control.Rd | 3 Colossus-1.2/Colossus/man/Def_modelform_fix.Rd | 5 Colossus-1.2/Colossus/man/Event_Count_Gen.Rd |only Colossus-1.2/Colossus/man/Event_Time_Gen.Rd |only Colossus-1.2/Colossus/man/Gather_Guesses_CPP.Rd | 1 Colossus-1.2/Colossus/man/Interpret_Output.Rd |only Colossus-1.2/Colossus/man/Joint_Multiple_Events.Rd | 3 Colossus-1.2/Colossus/man/Model_Results_Log.Rd |only Colossus-1.2/Colossus/man/PoissonCurveSolver.Rd |only Colossus-1.2/Colossus/man/Replace_Missing.Rd | 3 Colossus-1.2/Colossus/man/RunCoxNull.Rd | 3 Colossus-1.2/Colossus/man/RunCoxPlots.Rd | 2 Colossus-1.2/Colossus/man/RunCoxRegression.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_Basic.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_CR.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_Guesses_CPP.Rd | 4 Colossus-1.2/Colossus/man/RunCoxRegression_Omnibus.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_Omnibus_Multidose.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_Single.Rd | 3 Colossus-1.2/Colossus/man/RunCoxRegression_Strata.Rd |only Colossus-1.2/Colossus/man/RunCoxRegression_Tier_Guesses.Rd | 6 Colossus-1.2/Colossus/man/RunPoissonEventAssignment.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonEventAssignment_bound.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression_Guesses_CPP.Rd | 4 Colossus-1.2/Colossus/man/RunPoissonRegression_Joint_Omnibus.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression_Omnibus.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression_Residual.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression_Single.Rd | 3 Colossus-1.2/Colossus/man/RunPoissonRegression_Strata.Rd |only Colossus-1.2/Colossus/man/RunPoissonRegression_Tier_Guesses.Rd | 6 Colossus-1.2/Colossus/man/System_Version.Rd | 6 Colossus-1.2/Colossus/man/Time_Since.Rd | 3 Colossus-1.2/Colossus/man/factorize.Rd | 3 Colossus-1.2/Colossus/man/factorize_par.Rd | 3 Colossus-1.2/Colossus/man/gen_time_dep.Rd | 3 Colossus-1.2/Colossus/man/interact_them.Rd | 3 Colossus-1.2/Colossus/src/Calc_Repeated.cpp | 1167 +- Colossus-1.2/Colossus/src/Calc_Repeated.h | 66 Colossus-1.2/Colossus/src/Main_Functions.cpp | 5307 +++++----- Colossus-1.2/Colossus/src/Main_Functions.h | 22 Colossus-1.2/Colossus/src/Omnibus_Pieces.cpp | 1709 +-- Colossus-1.2/Colossus/src/Omnibus_Pieces.h | 32 Colossus-1.2/Colossus/src/Plot_Extensions.cpp | 275 Colossus-1.2/Colossus/src/Plot_Extensions.h | 12 Colossus-1.2/Colossus/src/R_Interface.cpp | 725 - Colossus-1.2/Colossus/src/R_Interface.h | 24 Colossus-1.2/Colossus/src/RcppExports.cpp | 1710 ++- Colossus-1.2/Colossus/src/Step_Calc.cpp | 148 Colossus-1.2/Colossus/src/Step_Calc.h | 12 Colossus-1.2/Colossus/src/Subterms_Risk.cpp | 495 Colossus-1.2/Colossus/src/Subterms_Risk.h | 26 Colossus-1.2/Colossus/tests/testthat/test-Assigned.R |only Colossus-1.2/Colossus/tests/testthat/test-Cox_Plot.R | 61 Colossus-1.2/Colossus/tests/testthat/test-Cox_Regression.R | 162 Colossus-1.2/Colossus/tests/testthat/test-Gradient.R |only Colossus-1.2/Colossus/tests/testthat/test-Guess.R |only Colossus-1.2/Colossus/tests/testthat/test-Joint.R |only Colossus-1.2/Colossus/tests/testthat/test-Logbound.R |only Colossus-1.2/Colossus/tests/testthat/test-Multidose.R |only 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Colossus-1.2/Colossus/vignettes/Wald_and_Log_Bound.Rmd | 323 Colossus-1.2/Colossus/vignettes/count_time_tables.Rmd |only 143 files changed, 12087 insertions(+), 5953 deletions(-)
Title: Models of Decision Confidence and Measures of Metacognition
Description: Provides fitting functions and other tools for decision confidence
and metacognition researchers, including meta-d'/d', often considered to be
the gold standard to measure metacognitive efficiency, and information-theoretic measures of metacognition.
Also allows to fit several static models of decision making and confidence.
Author: Manuel Rausch [aut, cre] ,
Sascha Meyen [aut] ,
Sebastian Hellmann [aut]
Maintainer: Manuel Rausch <manuel.rausch@hochschule-rhein-waal.de>
Diff between statConfR versions 0.1.1 dated 2024-04-25 and 0.2.0 dated 2025-02-13
DESCRIPTION | 34 MD5 | 50 + NAMESPACE | 8 R/MaskOri-data.R | 6 R/estimateMetaI.R |only R/fitConf.R | 89 +- R/fitConfModels.R | 135 +-- R/fitMetaDprime.R | 70 +- R/int_estimate_RMI.R |only R/int_estimate_contingency_table.R |only R/int_estimate_meta_I.R |only R/int_estimate_meta_Ir1.R |only R/int_estimate_meta_Ir1_acc.R |only R/int_estimate_meta_Ir2.R |only R/int_estimate_sensitivity.R |only R/int_get_accuracy.R |only R/int_get_analytic_information_bounds.R |only R/int_get_bias_reduced_meta_measure.R |only R/int_get_binary_entropy.R |only R/int_get_entropy.R |only R/int_get_information.R |only R/int_get_normal_noise_classifier.R |only R/int_get_normal_noise_information.R |only R/int_get_pointwise_binary_transmitted_information.R |only R/int_get_pointwise_transmitted_information.R |only R/int_simulateConf.R | 2 R/plotConfModelFit.R |only R/simulateConf.R | 71 +- README.md | 663 ++++++++++++++++--- inst |only man/MaskOri.Rd | 7 man/estimateMetaI.Rd |only man/fitConf.Rd | 68 + man/fitConfModels.Rd | 93 +- man/fitMetaDprime.Rd | 197 +++-- man/plotConfModelFit.Rd |only man/simConf.Rd | 138 ++- 37 files changed, 1141 insertions(+), 490 deletions(-)
Title: A Coding Assistant using the Fast AI Inference 'Groq'
Description: A comprehensive suite of functions and 'RStudio' Add-ins leveraging the capabilities of open-source Large Language Models (LLMs) to support R developers. These functions offer a range of utilities, including text rewriting, translation, and general query capabilities. Additionally, the programming-focused functions provide assistance with debugging, translating, commenting, documenting, and unit testing code, as well as suggesting variable and function names, thereby streamlining the development process.
Author: Gabriel Kaiser [aut, cre]
Maintainer: Gabriel Kaiser <quantresearch.gk@gmail.com>
Diff between groqR versions 0.0.1 dated 2024-09-20 and 0.0.3 dated 2025-02-13
groqR-0.0.1/groqR/man/server.Rd |only groqR-0.0.1/groqR/man/ui.Rd |only groqR-0.0.3/groqR/DESCRIPTION | 6 groqR-0.0.3/groqR/MD5 | 32 ++- groqR-0.0.3/groqR/NAMESPACE | 96 +++++------ groqR-0.0.3/groqR/NEWS.md | 12 + groqR-0.0.3/groqR/R/APIcall.R | 4 groqR-0.0.3/groqR/R/addins.R | 20 -- groqR-0.0.3/groqR/R/coder.R | 5 groqR-0.0.3/groqR/R/groqR-package.R | 1 groqR-0.0.3/groqR/R/zzz.R | 285 ++++++++++++++++++--------------- groqR-0.0.3/groqR/man/coder.Rd | 4 groqR-0.0.3/groqR/man/figures |only groqR-0.0.3/groqR/man/groqR-package.Rd | 2 groqR-0.0.3/groqR/man/modelCall.Rd |only groqR-0.0.3/groqR/man/on_startup.Rd | 9 - groqR-0.0.3/groqR/man/serverInit.Rd |only groqR-0.0.3/groqR/man/uiInit.Rd |only 18 files changed, 264 insertions(+), 212 deletions(-)
Title: An API Wrapper for 'DAWA' - 'The Danish Address Web API'
Description: Functions for interacting with all sections of
the official 'Danish Address Web API' (also known as 'DAWA')
<https://api.dataforsyningen.dk>. The development of this package is
completely independent from the government agency, Klimadatastyrelsen,
who maintains the API.
Author: Aleksander Bang-Larsen [aut, cre, cph]
,
Agency of Climate Data [ctb]
Maintainer: Aleksander Bang-Larsen <contact@aleksanderbl.dk>
Diff between dawaR versions 0.2.7 dated 2024-12-07 and 0.3.0 dated 2025-02-13
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Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.3-2 dated 2024-09-04 and 1.3-3 dated 2025-02-13
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- build/vignette.rds |binary data/air.rda |binary data/fires.rda |binary inst/doc/jss816.pdf |binary inst/doc/sto.Rnw | 2 +- inst/doc/sto.pdf |binary inst/doc/stpg.pdf |binary inst/doc/stsubs.pdf |binary tests/stconstruct.R | 2 +- vignettes/sto.Rnw | 2 +- 12 files changed, 20 insertions(+), 20 deletions(-)
Title: Process Digital Images of a Vegetation Cover
Description: A collection of functions to process digital images, depict greenness index trajectories and extract relevant phenological stages.
Author: Gianluca Filippa [aut, cre],
Edoardo Cremonese [aut],
Mirco Migliavacca [aut],
Marta Galvagno [aut],
Matthias Folker [aut],
Andrew D. Richardson [aut],
Enrico Tomelleri [aut]
Maintainer: Gianluca Filippa <gian.filippa@gmail.com>
Diff between phenopix versions 2.4.4 dated 2024-01-19 and 2.4.5 dated 2025-02-13
DESCRIPTION | 41 +++++++++++++++++++++++++++++++++++------ MD5 | 20 ++++++++++---------- NAMESPACE | 1 + R/DrawMULTIROI.R | 2 +- R/PrintROI.R | 2 +- R/convertROI.R | 2 +- R/editExposure.R | 2 +- R/extractVIs.R | 4 ++-- R/plotSpatial.R | 4 ++-- R/resizeImage.R | 2 +- man/PhenoBP.Rd | 2 +- 11 files changed, 56 insertions(+), 26 deletions(-)
Title: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup
Description: Processes the raw data from closed loop flux chamber (or tent)
setups into ecosystem gas fluxes usable for analysis. It goes from a
data frame of gas concentration over time (which can contain several
measurements) and a meta data file indicating which measurement was done
when, to a data frame of ecosystem gas fluxes including quality diagnostics.
Functions provided include different models (exponential as described in
Zhao et al (2018) <doi:10.1016/j.agrformet.2018.08.022>, quadratic and
linear) to estimate the fluxes from the raw data, quality assessment,
plotting for visual check and calculation of fluxes based on the setup
specific parameters (chamber size, plot area, ...).
Author: Joseph Gaudard [aut, cre] ,
Paul Efren Santos-Andrade [aut],
Richard James Telford [aut]
Maintainer: Joseph Gaudard <joseph.gaudard@pm.me>
Diff between fluxible versions 0.0.1 dated 2024-08-27 and 1.0.0 dated 2025-02-13
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Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It allows to conveniently build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb] ,
Carson Zhang [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.2.0 dated 2025-02-07 and 0.2.1 dated 2025-02-13
DESCRIPTION | 6 ++-- MD5 | 40 ++++++++++++++--------------- NEWS.md | 13 +++++++-- R/LearnerTorchModel.R | 20 +++++--------- R/PipeOpTorch.R | 2 - R/PipeOpTorchModel.R | 4 ++ R/utils.R | 10 +++++-- README.md | 2 + man/mlr3torch_callbacks.Rd | 2 - man/mlr3torch_losses.Rd | 2 - man/mlr3torch_optimizers.Rd | 2 - man/mlr_learners.mlp.Rd | 2 + man/mlr_learners.tab_resnet.Rd | 2 + man/mlr_learners.torch_featureless.Rd | 4 ++ man/mlr_learners.torchvision.Rd | 2 + man/mlr_learners_torch.Rd | 2 + man/mlr_learners_torch_image.Rd | 2 + man/mlr_learners_torch_model.Rd | 6 +--- man/mlr_pipeops_torch.Rd | 18 +++++++++++++ tests/testthat/test_LearnerTorchModel.R | 19 +++++++++++++ tests/testthat/test_PipeOpTorchBatchNorm.R | 13 +++++++++ 21 files changed, 124 insertions(+), 49 deletions(-)
Title: Modeling Group Differences and Moderation Effects in Statistical
Network Models
Description: A toolbox for modeling manifest and latent group differences and moderation effects in various statistical network models.
Author: Jonas Haslbeck [aut, cre]
Maintainer: Jonas Haslbeck <jonashaslbeck@protonmail.com>
Diff between mnet versions 0.1.2 dated 2023-06-07 and 0.1.4 dated 2025-02-13
DESCRIPTION | 6 - MD5 | 23 ++-- NAMESPACE | 3 NEWS | 7 + R/Process_mlVAR.R | 33 ++++- R/VAR_GC.R |only R/f_pdb.R |only R/mlVAR_GC.R | 221 +++++++++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/Vignette_mlVAR_GC.R | 4 inst/doc/Vignette_mlVAR_GC.html | 221 ++++++++++++++++++++-------------------- man/VAR_GC.Rd |only man/mlVAR_GC.Rd | 19 ++- man/mnet-internal.Rd | 1 14 files changed, 367 insertions(+), 171 deletions(-)
Title: US College Scorecard Data
Description: Provides a tidied subset of the US College Scorecard dataset,
containing institutional characteristics, enrollment, student aid,
costs, and student outcomes at institutions of higher education in the
United States.
Author: Garrick Aden-Buie [aut, cre, cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between collegeScorecard versions 0.1.0 dated 2024-07-29 and 0.2.0 dated 2025-02-13
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 29 +++++++++++++++-------------- data/school.rda |binary data/scorecard.rda |binary 6 files changed, 27 insertions(+), 22 deletions(-)
More information about collegeScorecard at CRAN
Permanent link
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MKCOL, MOVE, and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.1.3 dated 2025-01-08 and 0.1.4 dated 2025-02-13
DESCRIPTION | 13 ++++--- LICENSE |only MD5 | 27 ++++++++-------- NEWS.md | 14 +++++--- R/webdav.R | 69 +++++++++++++++++++++++++++-------------- README.md | 3 + inst/doc/env_variables.html | 4 +- inst/doc/webdav.html | 4 +- man/webdav_copy_file.Rd | 18 ---------- man/webdav_create_directory.Rd | 2 - man/webdav_create_request.Rd | 2 - man/webdav_delete_resource.Rd | 2 - man/webdav_download_file.Rd | 2 - man/webdav_list_files.Rd | 3 + man/webdav_upload_file.Rd | 2 - 15 files changed, 90 insertions(+), 75 deletions(-)
Title: Cross-Validation for Multi-Population Mortality Models
Description: Implementation of cross-validation method for testing the forecasting accuracy of several multi-population mortality models. The family of multi-population includes several multi-population mortality models proposed through the actuarial and demography literature. The package includes functions for fitting and forecast the mortality rates of several populations. Additionally, we include functions for testing the forecasting accuracy of different multi-population models.
References.
Atance, D., Debon, A., and Navarro, E. (2020) <doi:10.3390/math8091550>.
Bergmeir, C. & Benitez, J.M. (2012) <doi:10.1016/j.ins.2011.12.028>.
Debon, A., Montes, F., & Martinez-Ruiz, F. (2011) <doi:10.1007/s13385-011-0043-z>.
Lee, R.D. & Carter, L.R. (1992) <doi:10.1080/01621459.1992.10475265>.
Russolillo, M., Giordano, G., & Haberman, S. (2011) <doi:10.1080/03461231003611933>.
Santolino, M. (2023) <doi:10.3390/risks11100170>.
Author: David Atance [aut, cre] ,
Ana Debon [aut]
Maintainer: David Atance <david.atance@uah.es>
Diff between CvmortalityMult versions 1.0.8 dated 2025-02-06 and 1.0.9 dated 2025-02-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/SpainMap.R | 1 + R/fitLCmulti.R | 2 -- README.md | 3 ++- man/SpainMap.Rd | 1 + 6 files changed, 13 insertions(+), 12 deletions(-)
More information about CvmortalityMult at CRAN
Permanent link
Title: Relative Quantification of Gene Expression using Delta Ct
Methods
Description: The commonly used methods for relative quantification of gene expression levels obtained in real-time PCR (Polymerase Chain Reaction) experiments are the delta Ct methods, encompassing 2^-dCt and 2^-ddCt methods, originally proposed by Kenneth J. Livak and Thomas D. Schmittgen (2001) <doi:10.1006/meth.2001.1262>. The main idea is to normalise gene expression values using endogenous control gene, present gene expression levels in linear form by using the 2^-(value)^ transformation, and calculate differences in gene expression levels between groups of samples (or technical replicates of a single sample). The 'RQdeltaCT' package offers functions that cover both methods for comparison of either independent groups of samples or groups with paired samples, together with importing expression datasets, performing multi-step quality control of data, enabling numerous data visualisations, enrichment of the standard workflow with additional useful analyses (correlation analysis, Receiver Op [...truncated...]
Author: Daniel Zalewski [aut, cre]
Maintainer: Daniel Zalewski <daniel.piotr.zalewski@gmail.com>
Diff between RQdeltaCT versions 1.3.0 dated 2024-04-17 and 1.3.2 dated 2025-02-13
DESCRIPTION | 6 MD5 | 97 NAMESPACE | 1 R/RQdeltaCT.R | 508 ++- R/data.Ct.10vs10.R |only R/data.Ct.3groups.R |only R/data.Ct.R | 4 README.md | 19 data/data.Ct.10vs10.rda |only data/data.Ct.3groups.rda |only data/data.Ct.rda |binary inst/doc/my-vignette.R | 1376 ++++++++-- inst/doc/my-vignette.Rmd | 1940 ++++++++++++-- inst/doc/my-vignette.html | 4537 ++++++++++++++++++++++------------- inst/extdata/data_Ct_long.txt | 2576 +++++++++---------- inst/extdata/data_Ct_wide.txt | 40 inst/extdata/data_design.txt | 80 man/FCh_plot.Rd | 11 man/ROCh.Rd | 8 man/RQ_dCt.Rd | 6 man/RQ_ddCt.Rd | 6 man/control_boxplot_gene.Rd | 4 man/control_boxplot_sample.Rd | 4 man/control_cluster_gene.Rd | 4 man/control_cluster_sample.Rd | 4 man/control_heatmap.Rd |only man/control_pca_gene.Rd | 4 man/control_pca_sample.Rd | 4 man/corr_gene.Rd | 4 man/corr_sample.Rd | 4 man/data.Ct.10vs10.Rd |only man/data.Ct.3groups.Rd |only man/data.Ct.Rd | 4 man/delta_Ct.Rd | 6 man/filter_Ct.Rd | 2 man/filter_transformed_data.Rd | 4 man/find_ref_gene.Rd | 14 man/log_reg.Rd | 15 man/make_Ct_ready.Rd | 2 man/norm_finder.Rd | 9 man/pca_kmeans.Rd | 6 man/results_barplot.Rd | 12 man/results_boxplot.Rd | 16 man/results_heatmap.Rd | 8 man/results_volcano.Rd | 7 man/single_pair_gene.Rd | 6 man/single_pair_sample.Rd | 6 vignettes/ROC_plot_3groups.png |only vignettes/ROC_plot_ind.png |binary vignettes/data.Ct.wide.vign.txt | 82 vignettes/data/data.Ct.wide.vign.txt | 82 vignettes/data3groups.txt |only vignettes/figure1ok.png |binary vignettes/my-vignette.Rmd | 1940 ++++++++++++-- 54 files changed, 9253 insertions(+), 4215 deletions(-)
Title: Genotype Calling for Bi-Allelic Marker Assays
Description: Genotyping assays for bi-allelic markers (e.g. SNPs) produce
signal intensities for the two alleles. 'fitPoly' assigns genotypes
(allele dosages) to a collection of polyploid samples based on these
signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
<doi:10.1186/1471-2105-12-172>.
New functions added on conversion of data from SNP array software formats,
drawing of XY-scatterplots with or without genotype colors,
checking against expected F1 segregation patterns,
comparing results from two different assays (probes) for the same SNP,
recovery from a saveMarkerModels() crash.
Author: Roeland E. Voorrips [aut],
Gerrit Gort [aut],
Alejandro Therese Navarro [aut],
Giorgio Tumino [aut, cre]
Maintainer: Giorgio Tumino <giorgio.tumino@wur.nl>
Diff between fitPoly versions 3.0.0 dated 2018-03-16 and 4.0.0 dated 2025-02-13
DESCRIPTION | 43 +++++-- MD5 | 67 ++++++++++- NAMESPACE | 119 +++++++++++++-------- R/fitPoly.r | 142 ++++++++++++++----------- R/fitPolyTools.R |only README.md |only build |only data/XYdat.RData |only data/datalist |only data/scores.RData |only inst |only man/F1Dosages2Matrix.Rd |only man/XY_plot.Rd |only man/XYdat.Rd |only man/calcRstats.Rd |only man/calcSegtypeInfo.Rd |only man/checkF1.Rd |only man/checkFilename.Rd |only man/combineFiles.Rd |only man/compareProbes.Rd |only man/concatbatch.Rd |only man/correctDosages.Rd |only man/drawXYplots.Rd |only man/expandUnknownParents.Rd |only man/fitMarkers.Rd |only man/fitOneMarker.Rd | 4 man/fitPoly.Rd | 2 man/fitPolyTools.Rd |only man/get.genocol.Rd |only man/getBatchFiles.Rd |only man/leftstr.Rd |only man/listSegtypes.Rd |only man/makeFitPolyFiles.Rd |only man/readAxiomSummary.Rd |only man/readDatfile.Rd |only man/readFullDataTable.Rd |only man/removeRedundant.Rd |only man/rightstr.Rd |only man/samplestats.Rd |only man/saveMarkerModels.Rd | 249 +------------------------------------------- man/scores.Rd |only man/scores2wide.Rd |only man/segtypeInfoSummary.Rd |only man/selMarkers_byR.Rd |only man/selMarkers_qall.Rd |only man/selSegtypeInfo.Rd |only man/splitNrenameSamples.Rd |only man/writeDatfile.Rd |only man/writeDosagefile.Rd |only vignettes |only 50 files changed, 266 insertions(+), 360 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington', 'Ludwig' and Omnivariant Generalised Least-Squares ('OGLS') approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isoch [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 6.4 dated 2024-10-19 and 6.5 dated 2025-02-13
DESCRIPTION | 8 +- MD5 | 21 +++--- R/UPb.R | 10 --- R/concordia.R | 87 ++++++++++++++-------------- R/discfilter.R | 83 ++++++++++++++++----------- R/discordia.R | 6 - R/em.R |only R/errorellipse.R | 11 +-- R/isochron.R | 169 +++++++++++++++++++++++++++++++++---------------------- R/toolbox.R | 22 +++---- man/concordia.Rd | 4 + man/isochron.Rd | 11 +++ 12 files changed, 249 insertions(+), 183 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.3.0 dated 2024-07-30 and 1.4.0 dated 2025-02-13
DESCRIPTION | 10 +- MD5 | 119 ++++++++++++++++--------------- NAMESPACE | 3 NEWS.md | 28 +++++++ R/aaa_ranges.R | 39 +++++++--- R/aaa_unknown.R | 4 - R/aaa_values.R | 69 +++++++++++++++--- R/compat-dplyr-old-parameters.R | 3 R/constructors.R | 118 ++++++++++++++++++------------ R/encode_unit.R | 24 +++--- R/finalize.R | 25 ++++-- R/grids.R | 27 ++++--- R/misc.R | 23 +++--- R/param_activation.R | 7 + R/param_all_neighbors.R | 2 R/param_buffer.R |only R/param_engine_partykit.R | 6 - R/param_engine_ranger.R | 4 - R/param_engine_sda.R | 6 - R/param_initial_umap.R | 2 R/param_mtry_prop.R | 2 R/param_num_tokens.R | 2 R/param_range_limits.R |only R/param_weight_func.R | 3 R/parameters.R | 126 ++++++++++++++++----------------- R/space_filling.R | 31 +++++--- README.md | 1 build/vignette.rds |binary inst/doc/dials.R | 36 ++++----- inst/doc/dials.Rmd | 53 +++++++++---- inst/doc/dials.html | 54 +------------- man/activation.Rd | 2 man/buffer.Rd |only man/dials-package.Rd | 2 man/grid_space_filling.Rd | 3 man/initial_umap.Rd | 2 man/new-param.Rd | 7 + man/parameters_constr.Rd | 2 man/range_limits.Rd |only man/range_validate.Rd | 4 - man/ranger_parameters.Rd | 4 - man/value_validate.Rd | 2 man/weight_func.Rd | 2 tests/testthat/_snaps/aaa_ranges.md |only tests/testthat/_snaps/constructors.md | 88 ++++++++++++++++++----- tests/testthat/_snaps/encode_unit.md | 32 ++++++++ tests/testthat/_snaps/finalize.md | 18 ++++ tests/testthat/_snaps/grids.md | 85 ++++++++-------------- tests/testthat/_snaps/misc.md | 10 ++ tests/testthat/_snaps/parameters.md | 77 ++++++++++++++------ tests/testthat/_snaps/space_filling.md | 31 +++++--- tests/testthat/test-aaa_ranges.R | 5 + tests/testthat/test-aaa_unknown.R | 6 + tests/testthat/test-aaa_values.R | 58 +++++++++++++++ tests/testthat/test-constructors.R | 49 ++++++++++++ tests/testthat/test-encode_unit.R | 16 ++++ tests/testthat/test-finalize.R | 63 +++++++++++++++- tests/testthat/test-grids.R | 48 +++++++----- tests/testthat/test-misc.R | 9 ++ tests/testthat/test-parameters.R | 27 ++++--- tests/testthat/test-params.R | 11 ++ tests/testthat/test-space_filling.R | 73 +++++++++---------- vignettes/dials.Rmd | 53 +++++++++---- 63 files changed, 1074 insertions(+), 542 deletions(-)
Title: Tour Methods for Multivariate Data Visualisation
Description: Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
Author: Hadley Wickham [aut, ctb] ,
Dianne Cook [aut, cre] ,
Nick Spyrison [ctb] ,
Ursula Laa [ctb] ,
H. Sherry Zhang [ctb] ,
Stuart Lee [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between tourr versions 1.2.0 dated 2024-04-19 and 1.2.4 dated 2025-02-13
tourr-1.2.0/tourr/man/dcor2d.Rd |only tourr-1.2.0/tourr/man/splines2d.Rd |only tourr-1.2.4/tourr/DESCRIPTION | 15 ++-- tourr-1.2.4/tourr/MD5 | 97 ++++++++++++++------------ tourr-1.2.4/tourr/NAMESPACE | 10 ++ tourr-1.2.4/tourr/NEWS.md | 21 +++++ tourr-1.2.4/tourr/R/animate.r | 35 +++++---- tourr-1.2.4/tourr/R/display-density2d.r | 6 + tourr-1.2.4/tourr/R/display-faces.r | 4 - tourr-1.2.4/tourr/R/display-groupxy.r | 6 + tourr-1.2.4/tourr/R/display-pca.r | 6 + tourr-1.2.4/tourr/R/display-sage.R | 6 + tourr-1.2.4/tourr/R/display-slice.r | 6 + tourr-1.2.4/tourr/R/display-trails.r | 5 - tourr-1.2.4/tourr/R/display-xy.r | 25 +++++- tourr-1.2.4/tourr/R/geodesic-path.r | 4 - tourr-1.2.4/tourr/R/geodesic.r | 2 tourr-1.2.4/tourr/R/history.r | 9 ++ tourr-1.2.4/tourr/R/interesting-indices.r | 89 +++++++++++++++++++++++- tourr-1.2.4/tourr/R/search-better.r | 52 ++------------ tourr-1.2.4/tourr/R/search-frozen-geodesic.r | 4 - tourr-1.2.4/tourr/R/search-geodesic.r | 33 +-------- tourr-1.2.4/tourr/R/search-jellyfish.R |only tourr-1.2.4/tourr/R/search_polish.r | 38 ++-------- tourr-1.2.4/tourr/R/search_posse.R | 22 ------ tourr-1.2.4/tourr/R/section-pursuit.r | 8 +- tourr-1.2.4/tourr/R/tour-guided-anomaly.r | 4 - tourr-1.2.4/tourr/R/tour-guided-section.r | 21 ----- tourr-1.2.4/tourr/R/tour-guided.r | 98 +++++++++++++-------------- tourr-1.2.4/tourr/R/tour.r | 24 ++++-- tourr-1.2.4/tourr/R/util.r | 20 +++++ tourr-1.2.4/tourr/build/vignette.rds |binary tourr-1.2.4/tourr/inst/doc/edges.html | 10 +- tourr-1.2.4/tourr/inst/doc/tourr.html | 26 +++---- tourr-1.2.4/tourr/inst/errors_w_jso.txt |only tourr-1.2.4/tourr/man/dcor.Rd |only tourr-1.2.4/tourr/man/display_density2d.Rd | 3 tourr-1.2.4/tourr/man/display_faces.Rd | 4 - tourr-1.2.4/tourr/man/display_groupxy.Rd | 3 tourr-1.2.4/tourr/man/display_pca.Rd | 3 tourr-1.2.4/tourr/man/display_sage.Rd | 3 tourr-1.2.4/tourr/man/display_slice.Rd | 3 tourr-1.2.4/tourr/man/display_trails.Rd | 3 tourr-1.2.4/tourr/man/display_xy.Rd | 10 ++ tourr-1.2.4/tourr/man/draw_tour_axes.Rd | 4 + tourr-1.2.4/tourr/man/guided_anomaly_tour.Rd | 2 tourr-1.2.4/tourr/man/guided_tour.Rd | 9 +- tourr-1.2.4/tourr/man/indexes.Rd |only tourr-1.2.4/tourr/man/jellyfish.Rd |only tourr-1.2.4/tourr/man/print_final_proj.Rd |only tourr-1.2.4/tourr/man/save_history.Rd | 9 ++ tourr-1.2.4/tourr/man/skewness.Rd |only tourr-1.2.4/tourr/man/spline-loess.Rd |only tourr-1.2.4/tourr/man/stringy.Rd |only tourr-1.2.4/tourr/man/tourr-package.Rd | 1 55 files changed, 442 insertions(+), 321 deletions(-)
Title: Single-Source Capture-Recapture Models
Description: Implementation of single-source capture-recapture methods for population size estimation using zero-truncated, zero-one truncated and zero-truncated one-inflated Poisson, Geometric and Negative Binomial regression as well as Zelterman's and Chao's regression. Package includes point and interval estimators for the population size with variances estimated using analytical or bootstrap method. Details can be found in: van der Heijden et all. (2003) <doi:10.1191/1471082X03st057oa>, Böhning and van der Heijden (2019) <doi:10.1214/18-AOAS1232>, Böhning et al. (2020) Capture-Recapture Methods for the Social and Medical Sciences or Böhning and Friedl (2021) <doi:10.1007/s10260-021-00556-8>.
Author: Piotr Chlebicki [aut, ctb] ,
Maciej Beresewicz [aut, cre]
Maintainer: Maciej Beresewicz <maciej.beresewicz@ue.poznan.pl>
Diff between singleRcapture versions 0.2.2 dated 2025-02-04 and 0.2.3 dated 2025-02-13
singleRcapture-0.2.2/singleRcapture/R/Chao.R |only singleRcapture-0.2.2/singleRcapture/R/Hurdleztgeom.R |only singleRcapture-0.2.2/singleRcapture/R/Hurdleztnegbin.R |only singleRcapture-0.2.2/singleRcapture/R/Hurdleztpoisson.R |only singleRcapture-0.2.2/singleRcapture/R/Internals.R |only singleRcapture-0.2.2/singleRcapture/R/nonparametricBootstrap.R |only singleRcapture-0.2.2/singleRcapture/R/parametricBootstrap.R |only singleRcapture-0.2.2/singleRcapture/R/semiparametricBootstrap.R |only singleRcapture-0.2.3/singleRcapture/DESCRIPTION | 6 singleRcapture-0.2.3/singleRcapture/MD5 | 65 ++++----- singleRcapture-0.2.3/singleRcapture/NAMESPACE | 8 + singleRcapture-0.2.3/singleRcapture/NEWS.md | 8 + singleRcapture-0.2.3/singleRcapture/R/bootstrapNonparametric.R |only singleRcapture-0.2.3/singleRcapture/R/bootstrapParametric.R |only singleRcapture-0.2.3/singleRcapture/R/bootstrapSemiparametric.R |only singleRcapture-0.2.3/singleRcapture/R/chao.R |only singleRcapture-0.2.3/singleRcapture/R/data.R | 6 singleRcapture-0.2.3/singleRcapture/R/documentationFiles.R | 32 ++-- singleRcapture-0.2.3/singleRcapture/R/hurdleztgeom.R |only singleRcapture-0.2.3/singleRcapture/R/hurdleztnegbin.R |only singleRcapture-0.2.3/singleRcapture/R/hurdleztpoisson.R |only singleRcapture-0.2.3/singleRcapture/R/internals.R |only singleRcapture-0.2.3/singleRcapture/R/methodsNotWorking.R |only singleRcapture-0.2.3/singleRcapture/R/miscDiagnostics.R | 4 singleRcapture-0.2.3/singleRcapture/R/sandwichMethods.R | 2 singleRcapture-0.2.3/singleRcapture/R/strataEstimation.R | 2 singleRcapture-0.2.3/singleRcapture/R/summary.R | 2 singleRcapture-0.2.3/singleRcapture/README.md | 70 +++++----- singleRcapture-0.2.3/singleRcapture/build/singleRcapture.pdf |binary singleRcapture-0.2.3/singleRcapture/build/stage23.rdb |binary singleRcapture-0.2.3/singleRcapture/inst/doc/singleRcapture.html | 6 singleRcapture-0.2.3/singleRcapture/inst/tinytest/test_methods.R | 33 ++++ singleRcapture-0.2.3/singleRcapture/man/carcassubmission.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/confint.singleRStaticCountData.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/farmsubmission.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/figures/README-plot-inflated-1.png |binary singleRcapture-0.2.3/singleRcapture/man/netherlandsimmigrant.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/singleRmodels.Rd | 45 +++--- singleRcapture-0.2.3/singleRcapture/man/stratifyPopsize.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/summary.singleRStaticCountData.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/vcov.singleRStaticCountData.Rd | 2 singleRcapture-0.2.3/singleRcapture/man/vcovHC.singleRStaticCountData.Rd | 2 42 files changed, 183 insertions(+), 122 deletions(-)
More information about singleRcapture at CRAN
Permanent link
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression with LASSO, elastic net, SCAD and MCP penalty functions including group penalties. In addition, offers a group penalty that provides consistent variable selection across quantiles. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC. Below URL provides a link to a work in progress vignette.
Author: Ben Sherwood [aut, cre],
Shaobo Li [aut],
Adam Maidman [aut]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 4.1.2 dated 2024-10-29 and 4.1.3 dated 2025-02-13
DESCRIPTION | 8 - MD5 | 12 - NEWS | 370 +++++++++++++++++++++++++++--------------------------- R/mainFunctions.R | 3 build/partial.rdb |binary man/rq.pen.cv.Rd | 3 man/rqPen.Rd | 10 + 7 files changed, 208 insertions(+), 198 deletions(-)
Title: Run Interruptible Code Asynchronously
Description: Takes an R expression and returns a Job object with a $stop() method
which can be called to terminate the background job. Also provides timeouts
and other mechanisms for automatically terminating a background job. The
result of the expression is available synchronously via $result or
asynchronously with callbacks or through the 'promises' package framework.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between jobqueue versions 1.0.1 dated 2025-01-30 and 1.3.0 dated 2025-02-13
DESCRIPTION | 8 ++-- MD5 | 36 +++++++++---------- NAMESPACE | 2 + NEWS.md | 8 ++++ R/job.r | 64 +++++++++++++++++++--------------- R/queue.r | 77 +++++++++++++++++++++++++++-------------- R/re-exports.r | 3 + R/utils.r | 42 +++++++++++++++++----- R/validate.r | 74 +++++++++++++++++++++++++++++---------- R/worker.r | 45 +++++++++++++++++------ README.md | 4 +- man/Job.Rd | 29 +++++++++------ man/Queue.Rd | 39 +++++++++++++------- man/Worker.Rd | 17 +++++++-- man/reexports.Rd | 3 + tests/testthat/test-job.r | 6 ++- tests/testthat/test-queue.r | 51 ++++++++++++++++----------- tests/testthat/test-validate.r | 15 ++++++- tests/testthat/test-worker.r | 24 +++++++++--- 19 files changed, 372 insertions(+), 175 deletions(-)
More information about VARcpDetectOnline at CRAN
Permanent link
Title: Tidy Quantitative Financial Analysis
Description: Bringing business and financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 1.0.10 dated 2025-01-08 and 1.0.11 dated 2025-02-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-tq_get_stock_prices.R | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Tools to Calibrate and Work with NEON Atmospheric Isotope Data
Description: Functions for downloading,
calibrating, and analyzing atmospheric isotope data bundled
into the eddy covariance data products of the National Ecological
Observatory Network (NEON) <https://www.neonscience.org>.
Calibration tools are provided for carbon and water isotope products.
Carbon isotope calibration details are found in Fiorella et al. (2021)
<doi:10.1029/2020JG005862>, and the readme
file at <https://github.com/lanl/NEONiso>. Tools for calibrating water
isotope products have been added as of 0.6.0, but have known deficiencies
and should be considered experimental and unsupported.
Author: Rich Fiorella [aut, cre]
Maintainer: Rich Fiorella <rfiorella@lanl.gov>
Diff between NEONiso versions 0.7.1 dated 2025-01-08 and 0.7.2 dated 2025-02-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/utility_functions.R | 5 +++-- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan'
Description: Perform hierarchical Bayesian Aldrich-McKelvey scaling using Hamiltonian Monte
Carlo via 'Stan'. Aldrich-McKelvey ('AM') scaling is a method for estimating the ideological
positions of survey respondents and political actors on a common scale using positional survey
data. The hierarchical versions of the Bayesian 'AM' model included in this package outperform
other versions both in terms of yielding meaningful posterior distributions for respondent
positions and in terms of recovering true respondent positions in simulations. The package
contains functions for preparing data, fitting models, extracting estimates, plotting key
results, and comparing models using cross-validation. The original version of the default
model is described in Bølstad (2024) <doi:10.1017/pan.2023.18>.
Author: Joergen Boelstad [aut, cre]
Maintainer: Joergen Boelstad <jorgen.bolstad@stv.uio.no>
Diff between hbamr versions 2.4.0 dated 2025-01-26 and 2.4.1 dated 2025-02-13
DESCRIPTION | 6 MD5 | 22 - NEWS.md | 6 R/LC1980.R | 2 R/LC2012.R | 2 R/hbam.R | 3 R/prep_data.R | 6 inst/stan/omni.stan | 18 man/LC1980.Rd | 2 man/LC2012.Rd | 2 man/prep_data.Rd | 2 src/stanExports_omni.h | 1022 +++++++++++++++++++++++++------------------------ 12 files changed, 563 insertions(+), 530 deletions(-)
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also
contains a number of lower level 'CLI' elements: rules, boxes, trees,
and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI
colors and text styles as well.
Author: Gabor Csardi [aut, cre],
Hadley Wickham [ctb],
Kirill Mueller [ctb],
Salim Brueggemann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <gabor@posit.co>
Diff between cli versions 3.6.3 dated 2024-06-21 and 3.6.4 dated 2025-02-13
DESCRIPTION | 18 - MD5 | 189 +++++++++-------- NAMESPACE | 8 NEWS.md | 24 ++ R/aaa-utils.R | 2 R/aab-rstudio-detect.R | 11 - R/ansi-hyperlink.R | 240 ++++++++++++++-------- R/assertions.R | 2 R/cliapp-docs.R | 2 R/cliapp.R | 6 R/glue.R | 11 - R/hash.R | 115 ++++++++++ R/inline.R | 4 R/internals.R | 2 R/mocks.R |only R/num-ansi-colors.R | 5 R/pluralize.R | 17 + R/prettycode.R | 8 R/progress-client.R | 5 R/simple-theme.R | 2 R/test.R | 21 + R/themes.R | 2 R/vt.R | 14 - exec/up.R | 2 man/ansi_align.Rd | 2 man/ansi_collapse.Rd | 5 man/ansi_columns.Rd | 2 man/ansi_nchar.Rd | 2 man/ansi_strsplit.Rd | 2 man/ansi_strtrim.Rd | 2 man/ansi_strwrap.Rd | 2 man/ansi_toupper.Rd | 6 man/ansi_trimws.Rd | 2 man/cli-package.Rd | 2 man/cli_abort.Rd | 4 man/cli_alert.Rd | 4 man/cli_blockquote.Rd | 4 man/cli_bullets.Rd | 2 man/cli_bullets_raw.Rd | 2 man/cli_dl.Rd | 4 man/cli_h1.Rd | 4 man/cli_li.Rd | 4 man/cli_ol.Rd | 4 man/cli_process_start.Rd | 8 man/cli_progress_along.Rd | 4 man/cli_progress_bar.Rd | 4 man/cli_progress_message.Rd | 4 man/cli_progress_output.Rd | 4 man/cli_progress_step.Rd | 4 man/cli_rule.Rd | 4 man/cli_status.Rd | 2 man/cli_status_clear.Rd | 4 man/cli_status_update.Rd | 6 man/cli_text.Rd | 4 man/cli_ul.Rd | 4 man/format_error.Rd | 4 man/format_inline.Rd | 4 man/hash_animal.Rd | 3 man/hash_emoji.Rd | 3 man/hash_md5.Rd | 3 man/hash_sha1.Rd | 3 man/hash_sha256.Rd | 3 man/hash_xxhash.Rd |only man/inline-markup.Rd | 3 man/pluralization-helpers.Rd | 14 + src/cli.h | 10 src/init.c | 6 src/xxhash.c |only src/xxhash.h |only src/xxhash2.c |only tests/testthat/_snaps/collapsing.md | 19 + tests/testthat/_snaps/hash.md | 46 ++++ tests/testthat/_snaps/links.md | 35 +++ tests/testthat/_snaps/pluralization.md | 93 ++++++++ tests/testthat/_snaps/spark.md | 8 tests/testthat/test-ansi-hyperlink.R | 278 ++++++++++++++++++++++++-- tests/testthat/test-collapsing.R | 38 +++ tests/testthat/test-format-conditions.R | 32 -- tests/testthat/test-hash.R | 19 + tests/testthat/test-inline-2.R | 2 tests/testthat/test-links.R | 37 +++ tests/testthat/test-non-breaking-space.R | 1 tests/testthat/test-num-ansi-colors.R | 109 ++++++---- tests/testthat/test-pluralization.R | 41 +++ tests/testthat/test-prettycode.R | 21 - tests/testthat/test-progress-along.R | 2 tests/testthat/test-progress-client.R | 18 + tests/testthat/test-progress-handler-logger.R | 2 tests/testthat/test-progress-handler-say.R | 2 tests/testthat/test-progress-handlers.R | 4 tests/testthat/test-progress-types.R | 6 tests/testthat/test-progress-utils.R | 2 tests/testthat/test-progress-variables.R | 58 ++--- tests/testthat/test-rlang-errors.R | 34 --- tests/testthat/test-spark.R | 4 tests/testthat/test-utils.R | 27 +- tools/get-rstudio-themes.R | 2 tools/spinners.R | 8 98 files changed, 1351 insertions(+), 474 deletions(-)
Title: ACE and AVAS for Selecting Multiple Regression Transformations
Description: Two nonparametric methods for multiple regression transform selection are provided.
The first, Alternating Conditional Expectations (ACE),
is an algorithm to find the fixed point of maximal
correlation, i.e. it finds a set of transformed response variables that maximizes R^2
using smoothing functions [see Breiman, L., and J.H. Friedman. 1985. "Estimating Optimal Transformations
for Multiple Regression and Correlation". Journal of the American Statistical Association.
80:580-598. <doi:10.1080/01621459.1985.10478157>].
Also included is the Additivity Variance Stabilization (AVAS) method which works better than ACE when
correlation is low [see Tibshirani, R. 1986. "Estimating Transformations for Regression via Additivity
and Variance Stabilization". Journal of the American Statistical Association. 83:394-405.
<doi:10.1080/01621459.1988.10478610>]. A good introduction to these two methods is in chapter 16 of
Frank Harrell's "Regression Modeling Strategies" in the Springer Serie [...truncated...]
Author: Phil Spector [aut],
Jerome Friedman [aut],
Robert Tibshirani [aut],
Thomas Lumley [aut],
Shawn Garbett [cre, aut] ,
Jonathan Baron [aut],
Bernhard Klar [aut],
Scott Chasalow [aut]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between acepack versions 1.5.2 dated 2025-01-27 and 1.6.1 dated 2025-02-13
DESCRIPTION | 28 +++-- LICENSE.note | 16 +++ MD5 | 25 ++-- NAMESPACE | 25 ++++ NEWS.md | 22 +++- R/ace.R | 214 +++++++++++++++++++++++++++++++++++++++-- R/acetest.R |only R/avas.R | 186 ++++++++++++++++++++++++++++++++++- R/set_control.R | 16 +++ README.md | 5 man/ace.Rd | 78 ++++++++++++++ man/ace.test.Rd |only man/avas.Rd | 78 +++++++++++++- tests/testthat/test_ace.R | 59 ++++++++++- tests/testthat/test_ace_test.R |only 15 files changed, 697 insertions(+), 55 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-05 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 2.0.0
2022-03-15 1.3.0
2022-03-08 1.2.0
2022-02-18 1.1.0