Title: Influence Function Based Estimate Objects
Description: Implements an S7 class for estimates based on influence functions.
Standard arithmetic operations are defined for the class.
Author: Nicholas Williams [aut, cre, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between ife versions 0.1.0 dated 2024-11-08 and 0.1.12 dated 2025-02-14
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 2 ++ NEWS.md |only R/ife.R | 7 +++++-- R/influence_func_estimand.R | 20 ++++++++++++++++---- README.md | 22 +++++++++++++--------- man/ife_constructor.Rd | 14 ++++++++++++-- tests/testthat/test-validator.R | 4 ++++ 9 files changed, 63 insertions(+), 27 deletions(-)
Title: Encapsulated Classes with Reference Semantics
Description: Creates classes with reference semantics, similar to R's
built-in reference classes. Compared to reference classes, R6 classes
are simpler and lighter-weight, and they are not built on S4 classes
so they do not require the methods package. These classes allow public
and private members, and they support inheritance, even when the
classes are defined in different packages.
Author: Winston Chang [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Winston Chang <winston@posit.co>
Diff between R6 versions 2.6.0 dated 2025-02-12 and 2.6.1 dated 2025-02-14
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 8 ++++++-- R/r6_class.R | 5 +++-- tests/testthat/test-dollarnames.R |only 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Automated Estimation of Sigmoidal and Piecewise Linear Mixed
Models
Description: Estimation of relatively complex nonlinear mixed-effects models, including the Sigmoidal Mixed Model and the Piecewise Linear Mixed Model with abrupt or smooth transition, through a single intuitive line of code and with automated generation of starting values.
Author: Maude Wagner [aut, cre] ,
Ana W. Capuano [aut],
Emmanuelle Comets [ctb]
Maintainer: Maude Wagner <maude_wagner@rush.edu>
Diff between nlive versions 0.6.0 dated 2024-05-26 and 0.7.0 dated 2025-02-14
DESCRIPTION | 10 +++++----- MD5 | 8 +++++--- NAMESPACE | 12 ++++++++++++ R/globals.R | 5 ++++- R/nlive.splines.R |only man/nlive.splines.Rd |only 6 files changed, 26 insertions(+), 9 deletions(-)
Title: Automatic Shift Detection using a Phylogenetic EM
Description: Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.
Author: Paul Bastide [aut, cre],
Mahendra Mariadassou [ctb]
Maintainer: Paul Bastide <paul.bastide@m4x.org>
Diff between PhylogeneticEM versions 1.7.0 dated 2024-01-31 and 1.8.0 dated 2025-02-14
DESCRIPTION | 11 MD5 | 46 +-- NAMESPACE | 1 NEWS.md | 8 R/estimateEM.R | 301 ++++++++++++++------- R/generic_functions.R | 1 R/model_selection.R | 1 R/plot_functions.R | 2 build/vignette.rds |binary inst/doc/monkeys.R | 36 +- inst/doc/monkeys.Rmd | 2 inst/doc/monkeys.html | 400 +--------------------------- inst/doc/tutorial.R | 28 - inst/doc/tutorial.Rmd | 2 inst/doc/tutorial.html | 72 ----- man/PhyloEM.Rd | 6 man/estimateEM.Rd | 2 man/merge_alpha_grids.Rd |only man/plot.PhyloEM.Rd | 2 man/plot.equivalent_shifts.Rd | 2 man/plot.params_process.Rd | 2 tests/testthat/test-utilities-merge_alpha.R |only tests/testthat/test-utilities-rotations.R | 65 ++++ vignettes/monkeys.Rmd | 2 vignettes/tutorial.Rmd | 2 25 files changed, 388 insertions(+), 606 deletions(-)
More information about PhylogeneticEM at CRAN
Permanent link
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre] ,
Mike Johnson [aut] ,
Marc Weber [ctb] ,
Josh Erickson [ctb],
Lauren Koenig [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 1.3.0 dated 2024-12-18 and 1.3.1 dated 2025-02-14
nhdplusTools-1.3.0/nhdplusTools/man/discover_nldi_characteristics.Rd |only nhdplusTools-1.3.0/nhdplusTools/man/get_nldi_characteristics.Rd |only nhdplusTools-1.3.1/nhdplusTools/DESCRIPTION | 8 nhdplusTools-1.3.1/nhdplusTools/MD5 | 44 nhdplusTools-1.3.1/nhdplusTools/NAMESPACE | 3 nhdplusTools-1.3.1/nhdplusTools/NEWS.md | 6 nhdplusTools-1.3.1/nhdplusTools/R/A_nhdplusTools.R | 1050 +-- nhdplusTools-1.3.1/nhdplusTools/R/arcrest_tools.R | 462 - nhdplusTools-1.3.1/nhdplusTools/R/downloading_tools.R | 3 nhdplusTools-1.3.1/nhdplusTools/R/get_hydro.R | 67 nhdplusTools-1.3.1/nhdplusTools/R/get_nldi.R | 78 nhdplusTools-1.3.1/nhdplusTools/inst/doc/get_3dhp_data.html | 95 nhdplusTools-1.3.1/nhdplusTools/inst/doc/get_data_overview.html | 3397 +++++++++- nhdplusTools-1.3.1/nhdplusTools/inst/doc/nhdplusTools.html | 3012 ++++++++ nhdplusTools-1.3.1/nhdplusTools/inst/doc/nhdplushr.html | 4 nhdplusTools-1.3.1/nhdplusTools/inst/doc/plot_nhdplus.html | 87 nhdplusTools-1.3.1/nhdplusTools/man/download_nhdplushr.Rd | 3 nhdplusTools-1.3.1/nhdplusTools/man/get_3dhp.Rd | 4 nhdplusTools-1.3.1/nhdplusTools/man/get_huc.Rd | 2 nhdplusTools-1.3.1/nhdplusTools/man/get_nhdphr.Rd |only nhdplusTools-1.3.1/nhdplusTools/man/query_usgs_arcrest.Rd | 8 nhdplusTools-1.3.1/nhdplusTools/tests/testthat/test_01_get_nldi.R | 36 nhdplusTools-1.3.1/nhdplusTools/tests/testthat/test_arcrest.R | 8 nhdplusTools-1.3.1/nhdplusTools/tests/testthat/test_geoconnex.R | 4 nhdplusTools-1.3.1/nhdplusTools/tests/testthat/test_get_nhdphr.R |only 25 files changed, 7253 insertions(+), 1128 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.14.1 dated 2025-02-03 and 0.14.2 dated 2025-02-14
DESCRIPTION | 6 +- MD5 | 16 ++--- NEWS.md | 4 + R/install.R | 2 build/partial.rdb |binary configure.win | 2 inst/doc/tensor-creation.html | 8 +- inst/doc/torchscript.html | 112 ++++++++++++++++++++--------------------- inst/include/lantern/lantern.h | 28 ---------- 9 files changed, 78 insertions(+), 100 deletions(-)
Title: Tree Taper Curves and Sorting Based on 'TapeR'
Description: Providing new german-wide 'TapeR' Models and functions for their
evaluation. Included are the most common tree species in Germany (Norway
spruce, Scots pine, European larch, Douglas fir, Silver fir as well as
European beech, Common/Sessile oak and Red oak). Many other species are mapped
to them so that 36 tree species / groups can be processed. Single trees are
defined by species code, one or multiple diameters in arbitrary measuring
height and tree height. The functions then provide information on diameters
along the stem, bark thickness, height of diameters, volume of the total or
parts of the trunk and total and component above-ground biomass. It is also
possible to calculate assortments from the taper curves. Uncertainty
information is provided for diameter, volume and component biomass estimation.
Author: Christian Vonderach [aut, cre],
Edgar Kublin [aut],
Gerald Kaendler [aut]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>
Diff between TapeS versions 0.13.2 dated 2025-01-22 and 0.13.3 dated 2025-02-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/sysdata.rda |binary build/partial.rdb |binary inst/doc/tapes.R | 14 +++++++------- inst/doc/tapes.html | 4 ++-- 7 files changed, 22 insertions(+), 18 deletions(-)
Title: The Official SolveBio API Client
Description: R language bindings for SolveBio's API.
SolveBio is a biomedical knowledge hub that enables life science
organizations to collect and harmonize the complex, disparate
"multi-omic" data essential for today's R&D and BI needs.
Author: Tobi Guennel [aut, cre]
Maintainer: Tobi Guennel <tobi.guennel@precisionformedicine.com>
Diff between solvebio versions 2.15.0 dated 2024-08-16 and 2.15.1 dated 2025-02-14
DESCRIPTION | 15 +++++++-------- MD5 | 2 +- 2 files changed, 8 insertions(+), 9 deletions(-)
Title: Run Interruptible Code Asynchronously
Description: Takes an R expression and returns a Job object with a $stop() method
which can be called to terminate the background job. Also provides timeouts
and other mechanisms for automatically terminating a background job. The
result of the expression is available synchronously via $result or
asynchronously with callbacks or through the 'promises' package framework.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between jobqueue versions 1.3.0 dated 2025-02-13 and 1.3.1 dated 2025-02-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 3 +-- tests/testthat/test-job.r | 2 +- tests/testthat/test-queue.r | 12 ++++++------ tests/testthat/test-worker.r | 17 +++++++++-------- 6 files changed, 26 insertions(+), 26 deletions(-)
Title: Bootstrap for State Space Models
Description: Provides a streamlined and user-friendly framework
for bootstrapping in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
For an introduction to state space models in social and behavioral sciences,
refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between bootStateSpace versions 1.0.1 dated 2025-01-22 and 1.0.2 dated 2025-02-14
DESCRIPTION | 6 - MD5 | 108 +++++++++--------- NEWS.md | 8 + R/bootStateSpace-coef-fit-dynr-dot.R | 4 R/bootStateSpace-dynr-data-dot.R | 2 R/bootStateSpace-dynr-dynamics-dot.R | 20 +-- R/bootStateSpace-dynr-initial-dot.R | 12 -- R/bootStateSpace-dynr-measurement-dot.R | 16 +- R/bootStateSpace-dynr-noise-dot.R | 14 +- R/bootStateSpace-formula-lin-sde-dot.R | 41 ++---- R/bootStateSpace-formula-ou-dot.R | 97 +++++++--------- R/bootStateSpace-formula-var-dot.R | 41 ++---- R/bootStateSpace-label-full-dot.R | 28 ++-- R/bootStateSpace-label-sym-dot.R | 46 +++---- R/bootStateSpace-lambda-label-dot.R | 14 +- R/bootStateSpace-methods.R | 32 +---- R/bootStateSpace-pb-ci-dot.R | 4 R/bootStateSpace-pb-coef-dynr-dot.R | 24 +--- R/bootStateSpace-pb-ssm-fixed-fork-dot.R | 8 - R/bootStateSpace-pb-ssm-fixed-prep-dynr-dot.R | 14 +- R/bootStateSpace-pb-ssm-fixed-serial-dot.R | 8 - R/bootStateSpace-pb-ssm-fixed-socket-dot.R | 8 - R/bootStateSpace-pb-ssm-fixed.R | 24 +++- R/bootStateSpace-pb-ssm-lin-sde-fixed-fork-dot.R | 8 - R/bootStateSpace-pb-ssm-lin-sde-fixed-prep-dynr-dot.R | 14 +- R/bootStateSpace-pb-ssm-lin-sde-fixed-serial-dot.R | 8 - R/bootStateSpace-pb-ssm-lin-sde-fixed-socket-dot.R | 8 - R/bootStateSpace-pb-ssm-lin-sde-fixed.R | 21 ++- R/bootStateSpace-pb-ssm-ou-fixed-fork-dot.R | 8 - R/bootStateSpace-pb-ssm-ou-fixed-prep-dynr-dot.R | 14 +- R/bootStateSpace-pb-ssm-ou-fixed-serial-dot.R | 8 - R/bootStateSpace-pb-ssm-ou-fixed-socket-dot.R | 8 - R/bootStateSpace-pb-ssm-ou-fixed.R | 21 ++- R/bootStateSpace-pb-ssm-var-fixed-fork-dot.R | 8 - R/bootStateSpace-pb-ssm-var-fixed-prep-dynr-dot.R | 14 +- R/bootStateSpace-pb-ssm-var-fixed-serial-dot.R | 8 - R/bootStateSpace-pb-ssm-var-fixed-socket-dot.R | 8 - R/bootStateSpace-pb-ssm-var-fixed.R | 21 ++- R/bootStateSpace-vec-2-full-mat-dot.R | 2 R/bootStateSpace-vec-2-mat-dot.R | 27 ++-- R/bootStateSpace-vec-2-sym-mat-dot.R | 2 R/linearAlgebra-vec-dot.R | 2 R/linearAlgebra-vech-dot.R | 14 +- R/nBootstrap-bc-ci-dot.R | 12 -- R/nBootstrap-bc-probs-dot.R | 6 - R/nBootstrap-ci-format-dot.R | 2 R/nBootstrap-pc-ci-dot.R | 12 -- R/nBootstrap-pc-probs-dot.R | 8 - R/nBootstrap-z0-dot.R | 10 - R/nBootstrap-z1-dot.R | 4 R/simStateSpace-long-dot.R | 10 - man/PBSSMFixed.Rd | 7 + man/PBSSMLinSDEFixed.Rd | 7 + man/PBSSMOUFixed.Rd | 7 + man/PBSSMVARFixed.Rd | 7 + 55 files changed, 431 insertions(+), 464 deletions(-)
More information about bootStateSpace at CRAN
Permanent link
Title: Bayesian Methods for Change Points Analysis
Description: Perform change points detection on univariate and multivariate time series according to the methods presented by Asael Fabian Martínez and Ramsés H. Mena (2014) <doi:10.1214/14-BA878> and Corradin, Danese and Ongaro (2022) <doi:10.1016/j.ijar.2021.12.019>. It also clusters different types of time dependent data with common change points, see "Model-based clustering of time-dependent observations with common structural changes" (Corradin,Danese,KhudaBukhsh and Ongaro, 2024) <doi:10.48550/arXiv.2410.09552> for details.
Author: Luca Danese [aut, cre, cph] ,
Riccardo Corradin [aut],
Andrea Ongaro [aut]
Maintainer: Luca Danese <l.danese1@campus.unimib.it>
Diff between BayesChange versions 1.1.0 dated 2025-02-13 and 1.1.1 dated 2025-02-14
DESCRIPTION | 6 - MD5 | 26 ++--- NEWS.md | 2 inst/doc/tutorial.R | 134 ++++++++++++++--------------- inst/doc/tutorial.Rmd | 38 ++++---- inst/doc/tutorial.html | 112 +++--------------------- src/Makevars | 11 +- src/code.cpp | 21 +--- tests/testthat/test-test-clust_cp_epi.R | 7 - tests/testthat/test-test-clust_cp_multi.R | 41 ++------ tests/testthat/test-test-clust_cp_uni.R | 25 +---- tests/testthat/test-test-detect_cp_multi.R | 18 +-- tests/testthat/test-test-detect_cp_uni.R | 21 +--- vignettes/tutorial.Rmd | 38 ++++---- 14 files changed, 183 insertions(+), 317 deletions(-)
Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
For an introduction to state space models in social and behavioral sciences,
refer to Chow, Ho, Hamaker, and Dolan (2010) <doi:10.1080/10705511003661553>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.2.8 dated 2025-01-23 and 1.2.9 dated 2025-02-14
simStateSpace-1.2.8/simStateSpace/R/linearAlgebra-vec-dot.R |only simStateSpace-1.2.8/simStateSpace/R/linearAlgebra-vech-dot.R |only simStateSpace-1.2.9/simStateSpace/DESCRIPTION | 6 simStateSpace-1.2.9/simStateSpace/MD5 | 82 +++++----- simStateSpace-1.2.9/simStateSpace/NAMESPACE | 2 simStateSpace-1.2.9/simStateSpace/NEWS.md | 6 simStateSpace-1.2.9/simStateSpace/R/RcppExports.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-lin-sde-cov.R |only simStateSpace-1.2.9/simStateSpace/R/simStateSpace-lin-sde-mean.R |only simStateSpace-1.2.9/simStateSpace/R/simStateSpace-long-dot.R | 10 - simStateSpace-1.2.9/simStateSpace/R/simStateSpace-methods-simstatespace.R | 14 - simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-fixed.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-i-vary.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-lin-growth-i-vary.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-lin-growth.R | 12 - simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-lin-sde-fixed.R | 2 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-lin-sde-i-vary.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-ou-fixed.R | 2 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-ou-i-vary.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-var-fixed.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-sim-ssm-var-i-vary.R | 4 simStateSpace-1.2.9/simStateSpace/R/simStateSpace-wide-dot.R | 2 simStateSpace-1.2.9/simStateSpace/man/LinSDE2SSM.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/LinSDECov.Rd |only simStateSpace-1.2.9/simStateSpace/man/LinSDEMean.Rd |only simStateSpace-1.2.9/simStateSpace/man/SimBetaN.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimPhiN.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMFixed.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMIVary.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMLinGrowth.Rd | 10 - simStateSpace-1.2.9/simStateSpace/man/SimSSMLinGrowthIVary.Rd | 4 simStateSpace-1.2.9/simStateSpace/man/SimSSMLinSDEFixed.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMLinSDEIVary.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMOUFixed.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMOUIVary.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMVARFixed.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/SimSSMVARIVary.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/TestPhi.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/TestStability.Rd | 2 simStateSpace-1.2.9/simStateSpace/man/TestStationarity.Rd | 2 simStateSpace-1.2.9/simStateSpace/src/RcppExports.cpp | 14 + simStateSpace-1.2.9/simStateSpace/src/source.cpp | 13 + simStateSpace-1.2.9/simStateSpace/tests/testthat/test-simStateSpace-lin-sde-cov.R |only simStateSpace-1.2.9/simStateSpace/tests/testthat/test-simStateSpace-lin-sde-mean.R |only simStateSpace-1.2.9/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-growth.R | 8 simStateSpace-1.2.9/simStateSpace/tests/testthat/test-simStateSpace-sim-ssm-lin-sde-i-vary.R | 62 +++++++ 46 files changed, 210 insertions(+), 99 deletions(-)
Title: (Kernel) Isotope Niche Estimation
Description: Applies methods used to estimate animal homerange, but
instead of geospatial coordinates, we use isotopic coordinates. The estimation
methods include: 1) 2-dimensional bivariate normal kernel utilization density
estimator, 2) bivariate normal ellipse estimator, and 3) minimum convex polygon
estimator, all applied to stable isotope data. Additionally, functions to
determine niche area, polygon overlap between groups and levels (confidence
contours) and plotting capabilities.
Author: Shannon E Albeke [aut, cre]
Maintainer: Shannon E Albeke <salbeke@uwyo.edu>
Diff between rKIN versions 1.0.2 dated 2023-10-02 and 1.0.3 dated 2025-02-14
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/plotKIN.R | 2 +- build/vignette.rds |binary 4 files changed, 9 insertions(+), 9 deletions(-)
Title: 'parsnip' Engines for Survival Models
Description: Engines for survival models from the 'parsnip' package. These
include parametric models (e.g., Jackson (2016)
<doi:10.18637/jss.v070.i08>), semi-parametric (e.g., Simon et al
(2011) <doi:10.18637/jss.v039.i05>), and tree-based models (e.g.,
Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>).
Author: Emil Hvitfeldt [aut] ,
Hannah Frick [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between censored versions 0.3.2 dated 2024-06-11 and 0.3.3 dated 2025-02-14
DESCRIPTION | 15 ++- MD5 | 43 ++++++---- NEWS.md | 7 + R/censored-package.R | 30 ++++++- R/survival_reg-data.R | 51 ++++++------ R/survival_reg-flexsurv.R | 43 ++++++++++ R/survival_reg-survival.R | 42 ++-------- README.md | 26 +++--- tests/testthat/_snaps/bag_tree-rpart.md | 8 ++ tests/testthat/_snaps/boost_tree-mboost.md |only tests/testthat/_snaps/decision_tree-partykit.md |only tests/testthat/_snaps/decision_tree-rpart.md |only tests/testthat/_snaps/proportional_hazards-survival.md | 8 ++ tests/testthat/_snaps/rand_forest-aorsf.md |only tests/testthat/_snaps/rand_forest-partykit.md |only tests/testthat/test-bag_tree-rpart.R | 31 +++++-- tests/testthat/test-boost_tree-mboost.R | 34 ++++++-- tests/testthat/test-decision_tree-partykit.R | 32 ++++++-- tests/testthat/test-decision_tree-rpart.R | 46 ++++++++--- tests/testthat/test-proportional_hazards-survival.R | 40 +++++++--- tests/testthat/test-rand_forest-aorsf.R | 47 +++++++++-- tests/testthat/test-rand_forest-partykit.R | 32 +++++--- tests/testthat/test-survival_reg-flexsurv.R | 67 ++++++++--------- tests/testthat/test-survival_reg-flexsurvspline.R | 58 ++++++-------- tests/testthat/test-survival_reg-survival.R | 39 +++++++-- 25 files changed, 458 insertions(+), 241 deletions(-)
Title: EcoPhyloMapper
Description: Facilitates the aggregation of species' geographic ranges from vector or raster spatial data, and that enables the calculation of various morphological and phylogenetic community metrics across geography. Citation: Title, PO, DL Swiderski and ML Zelditch (2022) <doi:10.1111/2041-210X.13914>.
Author: Pascal Title [aut, cre] ,
Donald Swiderski [aut],
Miriam Zelditch [aut]
Maintainer: Pascal Title <pascal.title@stonybrook.edu>
Diff between epm versions 1.1.3 dated 2024-09-13 and 1.1.4 dated 2025-02-14
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/addTraits.R | 12 +++++++++++- R/plot.epmGrid.R | 6 +++++- R/plotDispersionField.R | 6 +++++- R/plotSpRange.R | 6 +++++- build/partial.rdb |binary man/plot.Rd | 2 +- man/plotDispersionField.Rd | 2 +- man/plotSpRange.Rd | 2 +- 10 files changed, 41 insertions(+), 19 deletions(-)
Title: Support Many Languages in R
Description: An object model for source text and translations. Find and extract
translatable strings. Provide translations and seamlessly retrieve them at
runtime.
Author: Jean-Mathieu Potvin [aut, cre, cph],
Jerome Lavoue [ctb, fnd, rev]
Maintainer: Jean-Mathieu Potvin <jeanmathieupotvin@ununoctium.dev>
Diff between transltr versions 0.0.1 dated 2025-01-24 and 0.1.0 dated 2025-02-14
transltr-0.0.1/transltr/R/constants.R |only transltr-0.0.1/transltr/R/translate-is-call.R |only transltr-0.0.1/transltr/R/translate.R |only transltr-0.0.1/transltr/man/translate-is-call.Rd |only transltr-0.0.1/transltr/man/translate.Rd |only transltr-0.0.1/transltr/tests/testthat/_snaps/constants.md |only transltr-0.0.1/transltr/tests/testthat/_snaps/normalize.md |only transltr-0.0.1/transltr/tests/testthat/_snaps/translate.md |only transltr-0.0.1/transltr/tests/testthat/test-constants.R |only transltr-0.0.1/transltr/tests/testthat/test-translate-is-call.R |only transltr-0.0.1/transltr/tests/testthat/test-translate.R |only transltr-0.1.0/transltr/DESCRIPTION | 26 transltr-0.1.0/transltr/MD5 | 155 ++--- transltr-0.1.0/transltr/NAMESPACE | 2 transltr-0.1.0/transltr/NEWS.md | 73 ++ transltr-0.1.0/transltr/R/aaa.R |only transltr-0.1.0/transltr/R/assert.R | 34 - transltr-0.1.0/transltr/R/class-location.R | 32 - transltr-0.1.0/transltr/R/class-text.R | 133 ++-- transltr-0.1.0/transltr/R/class-translator.R | 245 +++----- transltr-0.1.0/transltr/R/find-source-in-exprs.R | 122 ++-- transltr-0.1.0/transltr/R/find-source.R | 210 ++++-- transltr-0.1.0/transltr/R/flat.R | 26 transltr-0.1.0/transltr/R/hash.R | 35 + transltr-0.1.0/transltr/R/language.R | 5 transltr-0.1.0/transltr/R/normalize.R | 93 +-- transltr-0.1.0/transltr/R/serialize.R | 98 +-- transltr-0.1.0/transltr/R/text-io.R | 3 transltr-0.1.0/transltr/R/translator-io.R | 36 - transltr-0.1.0/transltr/R/transltr-package.R | 21 transltr-0.1.0/transltr/R/utils-format-vector.R | 48 - transltr-0.1.0/transltr/R/utils-strings.R | 31 - transltr-0.1.0/transltr/R/zzz.R | 16 transltr-0.1.0/transltr/README.md | 44 + transltr-0.1.0/transltr/inst |only transltr-0.1.0/transltr/man/assert.Rd | 40 - transltr-0.1.0/transltr/man/class-location-ranges.Rd | 6 transltr-0.1.0/transltr/man/class-location.Rd | 11 transltr-0.1.0/transltr/man/class-text.Rd | 107 +-- transltr-0.1.0/transltr/man/class-translator.Rd | 301 +++++----- transltr-0.1.0/transltr/man/constants.Rd | 43 - transltr-0.1.0/transltr/man/find-source-in-file.Rd | 81 +- transltr-0.1.0/transltr/man/find-source.Rd | 201 ++++-- transltr-0.1.0/transltr/man/flat.Rd | 20 transltr-0.1.0/transltr/man/hash.Rd | 13 transltr-0.1.0/transltr/man/language.Rd | 8 transltr-0.1.0/transltr/man/normalize.Rd | 48 - transltr-0.1.0/transltr/man/serialize.Rd | 39 - transltr-0.1.0/transltr/man/text-io.Rd | 11 transltr-0.1.0/transltr/man/translator-io.Rd | 44 - transltr-0.1.0/transltr/man/transltr-package.Rd | 18 transltr-0.1.0/transltr/man/utils-format-vector.Rd | 55 - transltr-0.1.0/transltr/man/utils-strings.Rd | 25 transltr-0.1.0/transltr/tests/testthat/_mocks/find-source/r-script1.R | 35 - transltr-0.1.0/transltr/tests/testthat/_mocks/find-source/r-script2.R | 34 - transltr-0.1.0/transltr/tests/testthat/_mocks/find-source/r-script3 | 11 transltr-0.1.0/transltr/tests/testthat/_mocks/find-source/r-script4.R |only transltr-0.1.0/transltr/tests/testthat/_snaps/class-text.md | 44 - transltr-0.1.0/transltr/tests/testthat/_snaps/class-translator.md | 54 + transltr-0.1.0/transltr/tests/testthat/_snaps/find-source.md | 27 transltr-0.1.0/transltr/tests/testthat/_snaps/serialize.md | 73 ++ transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io.md | 6 transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io/translations-write-el.txt | 4 transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io/translator-write-el.txt | 4 transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io/translator-write-es.txt | 4 transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io/translator-write-fr.txt | 4 transltr-0.1.0/transltr/tests/testthat/_snaps/translator-io/translator-write-translator.yml | 6 transltr-0.1.0/transltr/tests/testthat/_snaps/utils-strings.md | 26 transltr-0.1.0/transltr/tests/testthat/test-aaa.R |only transltr-0.1.0/transltr/tests/testthat/test-assert.R | 40 - transltr-0.1.0/transltr/tests/testthat/test-class-location.R | 18 transltr-0.1.0/transltr/tests/testthat/test-class-text.R | 77 -- transltr-0.1.0/transltr/tests/testthat/test-class-translator.R | 86 +- transltr-0.1.0/transltr/tests/testthat/test-find-source-in-exprs.R | 123 ++-- transltr-0.1.0/transltr/tests/testthat/test-find-source.R | 88 +- transltr-0.1.0/transltr/tests/testthat/test-flat.R | 10 transltr-0.1.0/transltr/tests/testthat/test-language.R | 8 transltr-0.1.0/transltr/tests/testthat/test-normalize.R | 179 ++--- transltr-0.1.0/transltr/tests/testthat/test-serialize.R | 186 +++--- transltr-0.1.0/transltr/tests/testthat/test-text-io.R | 4 transltr-0.1.0/transltr/tests/testthat/test-translator-io.R | 55 - transltr-0.1.0/transltr/tests/testthat/test-utils-map.R | 8 transltr-0.1.0/transltr/tests/testthat/test-utils-stop.R | 3 transltr-0.1.0/transltr/tests/testthat/test-utils-strings.R | 50 + transltr-0.1.0/transltr/tests/testthat/test-uuid.R | 6 transltr-0.1.0/transltr/tests/testthat/test-zzz.R | 22 86 files changed, 2051 insertions(+), 1803 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 3.1.0 dated 2024-12-17 and 3.2.0 dated 2025-02-14
DESCRIPTION | 13 +- MD5 | 42 ++++---- NAMESPACE | 3 NEWS.md | 8 + R/amp_scaling.R | 6 + R/cli_utils.R |only R/fit_display.R | 2 R/fit_svs.R | 179 ++++++++++++++++++++++++++++++-------- R/fitting.R | 16 ++- R/fmrs.R | 12 +- R/interactive_plotting.R | 2 R/mrs_read_dicom.R | 9 + R/qm_simulation.R | 2 inst/cli_scripts |only inst/doc/spant-intro.html | 130 +++++++++++++-------------- inst/doc/spant-preprocessing.html | 4 inst/rmd/dyn_svs_report.Rmd | 23 ++++ inst/rmd/svs_report.Rmd | 118 +++++++++++++++++++------ man/fit_svs.Rd | 33 +++++-- man/get_hrf.Rd |only man/install_cli.Rd |only man/one_page_pdf.Rd | 2 man/ortho3.Rd | 2 man/sim_basis.Rd | 2 24 files changed, 427 insertions(+), 181 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gabriel Staples [ctb],
Gerhard W [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 3.0.3 dated 2024-12-15 and 3.0.4 dated 2025-02-14
DESCRIPTION | 6 MD5 | 56 +-- NAMESPACE | 4 NEWS.md | 10 R/CTS.R | 4 R/rxUiGet.R | 39 ++ R/rxode-options.R | 4 R/rxode2_md5.R | 2 R/rxrandom.R | 61 +++ data/rxReservedKeywords.rda |binary data/rxResidualError.rda |binary data/rxSyntaxFunctions.rda |binary inst/doc/rxode2-syntax.html | 712 ++++++++++++++++++++++++++---------------- inst/include/rxode2parseVer.h | 4 man/rxUdfUi.Rd | 5 man/rxUiGet.Rd | 6 man/rxnbinom.Rd | 6 man/rxode2.Rd | 77 +--- src/RcppExports.cpp | 4 src/codegen.h | 4 src/cvPost.cpp | 1 src/expandGrid.cpp | 2 src/init.c | 2 src/rxData.cpp | 2 src/rxnbinom.h |only src/rxthreefry.cpp | 52 +-- src/rxthreefry.h | 1 tests/testthat/test-nesting.R |only tests/testthat/test-random.R | 93 +++++ tests/testthat/test-udf.R | 3 30 files changed, 771 insertions(+), 389 deletions(-)
Title: Download Overture Maps Data in R
Description: Overture Maps offers free and open geospatial map data sourced from various providers and standardized to a common schema. This tool allows you to download Overture Maps data for a specific region of interest and convert it to several different file formats. For more information, visit <https://overturemaps.org/download/>.
Author: Dennis Irorere [aut, cre, cph]
Maintainer: Dennis Irorere <denironyx@gmail.com>
Diff between overturemapsr versions 0.0.4 dated 2024-06-24 and 0.1.0 dated 2025-02-14
overturemapsr-0.0.4/overturemapsr/man/get_all_overture_types.Rd |only overturemapsr-0.1.0/overturemapsr/DESCRIPTION | 9 overturemapsr-0.1.0/overturemapsr/MD5 | 21 - overturemapsr-0.1.0/overturemapsr/NAMESPACE | 7 overturemapsr-0.1.0/overturemapsr/NEWS.md | 22 + overturemapsr-0.1.0/overturemapsr/R/core.R | 116 ++++++++-- overturemapsr-0.1.0/overturemapsr/R/utils.R | 6 overturemapsr-0.1.0/overturemapsr/README.md | 23 + overturemapsr-0.1.0/overturemapsr/man/dataset_path.Rd | 13 - overturemapsr-0.1.0/overturemapsr/man/get_all_overture_schema_types.Rd |only overturemapsr-0.1.0/overturemapsr/man/get_dataset_metadata.Rd |only overturemapsr-0.1.0/overturemapsr/man/record_batch_reader.Rd | 11 overturemapsr-0.1.0/overturemapsr/tests/testthat/test-1-core.R | 6 13 files changed, 173 insertions(+), 61 deletions(-)
Title: Routines for Performing Empirical Calibration of Observational
Study Estimates
Description: Routines for performing empirical calibration of observational
study estimates. By using a set of negative control hypotheses we can
estimate the empirical null distribution of a particular observational
study setup. This empirical null distribution can be used to compute a
calibrated p-value, which reflects the probability of observing an
estimated effect size when the null hypothesis is true taking both random
and systematic error into account. A similar approach can be used to
calibrate confidence intervals, using both negative and positive controls.
For more details, see Schuemie et al. (2013) <doi:10.1002/sim.5925> and
Schuemie et al. (2018) <doi:10.1073/pnas.1708282114>.
Author: Martijn Schuemie [aut, cre] ,
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EmpiricalCalibration versions 3.1.3 dated 2024-09-30 and 3.1.4 dated 2025-02-14
DESCRIPTION | 8 MD5 | 46 +-- NEWS.md | 13 R/ConfidenceIntervalCalibration.R | 2 R/Data.R | 2 R/EmpiricalCalibration.R | 2 R/EmpiricalCalibrationUsingAsymptotics.R | 11 R/EmpiricalCalibrationUsingMcmc.R | 9 R/Evaluation.R | 2 R/ExpectedSystematicError.R | 30 +- R/Likelihoods.R | 2 R/LlrCalibration.R | 2 R/MaxSprtCriticalValues.R | 2 R/Plots.R | 2 R/Simulation.R | 2 inst/doc/EmpiricalCiCalibrationVignette.pdf |binary inst/doc/EmpiricalMaxSprtCalibrationVignette.R | 176 ++++++------- inst/doc/EmpiricalMaxSprtCalibrationVignette.pdf |binary inst/doc/EmpiricalPCalibrationVignette.pdf |binary src/RcppWrapper.cpp | 2 tests/testthat/test-EmpiricalCalibrationUsingAsymptotics.R | 11 tests/testthat/test-LlrCalibration.R | 110 ++++---- tests/testthat/test-asymptoticNull.R | 5 tests/testthat/test-empiricalCalibrationUsingMcmc.R | 3 24 files changed, 238 insertions(+), 204 deletions(-)
More information about EmpiricalCalibration at CRAN
Permanent link
Title: Statistical Evaluation of UMAP Dimensionality Reductions
Description: A metric expressing the quality of a UMAP layout. This is a
package that contains the Saturn_coefficient() function that reads an
input matrix, its dimensionality reduction produced by UMAP, and
evaluates the quality of this dimensionality reduction by producing a
real value in the [0; 1] interval. We call this real value Saturn
coefficient. A higher value means better dimensionality reduction; a
lower value means worse dimensionality reduction.
Reference: Davide Chicco et al. "The Saturn coefficient for evaluating
the quality of UMAP dimensionality reduction results" (2025, in preparation).
Author: Davide Chicco [aut, cre]
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Diff between SaturnCoefficient versions 1.3 dated 2024-12-17 and 1.4 dated 2025-02-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Saturn_coefficient.r | 7 ++++--- 3 files changed, 9 insertions(+), 8 deletions(-)
More information about SaturnCoefficient at CRAN
Permanent link
Title: Tools to Match Corporate Lending Portfolios with Climate Data
Description: These tools implement in R a fundamental part of the software
'PACTA' (Paris Agreement Capital Transition Assessment), which is a
free tool that calculates the alignment between financial portfolios
and climate scenarios (<https://www.transitionmonitor.com/>). Financial
institutions use 'PACTA' to study how their capital allocation
decisions align with climate change mitigation goals. This package
matches data from corporate lending portfolios to asset level data
from market-intelligence databases (e.g. power plant capacities,
emission factors, etc.). This is the first step to assess if a
financial portfolio aligns with climate goals.
Author: Jacob Kastl [aut, cre, ctr] ,
Alex Axthelm [aut, ctr] ,
Jackson Hoffart [aut, ctr] ,
Mauro Lepore [aut, ctr] ,
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
RMI [cph, fnd]
Maintainer: Jacob Kastl <jacob.kastl@gmail.com>
Diff between r2dii.match versions 0.3.0 dated 2024-12-04 and 0.4.0 dated 2025-02-14
DESCRIPTION | 29 +++++++++++++++-------------- MD5 | 17 ++++++++++------- NEWS.md | 6 ++++++ R/data_dictionary.R |only README.md | 2 +- data |only man/data_dictionary.Rd |only man/r2dii.match-package.Rd | 4 ++-- tests/testthat.R | 2 ++ tests/testthat/test-match_name.R | 27 +++++++++++++++++++++++++++ tests/testthat/test-prioritize.R | 39 +++++++++++++++++++++++++++++++++++++++ 11 files changed, 102 insertions(+), 24 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Plot
Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
'ggplot2' plotting methods for 'nlmixr2' objects.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [ctb] ,
Wenping Wang [aut],
Vipul Mann [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2plot versions 3.0.0 dated 2024-09-18 and 3.0.1 dated 2025-02-14
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 1 + NEWS.md | 4 ++++ R/nlmixr2PlotList.R | 37 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-add.R |only 6 files changed, 51 insertions(+), 8 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark' 'python'
library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.1.5 dated 2024-06-24 and 0.1.6 dated 2025-02-14
DESCRIPTION | 6 +-- MD5 | 41 +++++++++++++-------------- NEWS.md | 19 ++++++++++++ R/databricks-utils.R | 20 +++++++++---- R/dplyr.R | 6 +-- R/ide-connections-pane.R | 6 +-- R/python-install.R | 3 - R/python-use-envname.R | 2 - R/sparklyr-spark-apply.R | 13 +++++--- R/sparklyr-spark-connect.R | 31 ++++++++++++-------- R/start-stop-service.R | 4 ++ tests/testthat/_snaps/databricks-utils.md |only tests/testthat/_snaps/dplyr.md | 4 +- tests/testthat/_snaps/python-install.md | 11 +++---- tests/testthat/helper-databricks.R | 16 ++++++++++ tests/testthat/helper-init.R | 1 tests/testthat/helper-utils.R | 2 - tests/testthat/test-databricks-utils.R | 8 +++-- tests/testthat/test-dplyr.R | 13 +++++--- tests/testthat/test-ml-pipeline.R | 2 + tests/testthat/test-sparklyr-spark-apply.R | 1 tests/testthat/test-sparklyr-spark-connect.R | 18 +++++++++++ 22 files changed, 157 insertions(+), 70 deletions(-)
Title: Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
Description: Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.
Author: Stephane Dray [aut] ,
Anne-Beatrice Dufour [aut] ,
Jean Thioulouse [aut] ,
Daniel Chessel [ant],
Thibaut Jombart [ctb],
Sandrine Pavoine [ctb],
Jean R. Lobry [ctb],
Sebastien Ollier [ctb],
Daniel Borcard [ctb],
Pierre Legendre [ctb],
Stephanie Bougea [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4 versions 1.7-22 dated 2023-02-06 and 1.7-23 dated 2025-02-14
ade4-1.7-22/ade4/R/multispati.R |only ade4-1.7-22/ade4/R/multispati.randtest.R |only ade4-1.7-22/ade4/R/multispati.rtest.R |only ade4-1.7-22/ade4/man/multispati.Rd |only ade4-1.7-22/ade4/man/multispati.randtest.Rd |only ade4-1.7-22/ade4/man/multispati.rtest.Rd |only ade4-1.7-23/ade4/DESCRIPTION | 49 ++- ade4-1.7-23/ade4/MD5 | 350 ++++++++++----------- ade4-1.7-23/ade4/NAMESPACE | 11 ade4-1.7-23/ade4/NEWS.md |only ade4-1.7-23/ade4/R/add.scatter.R | 18 - ade4-1.7-23/ade4/R/ade4-deprecated.R | 302 ++++++++++++++++++ ade4-1.7-23/ade4/R/amova.R | 6 ade4-1.7-23/ade4/R/apqe.R | 200 ++++++------ ade4-1.7-23/ade4/R/area.plot.R | 18 - ade4-1.7-23/ade4/R/as.taxo.R | 2 ade4-1.7-23/ade4/R/bca.R | 8 ade4-1.7-23/ade4/R/bca.coinertia.R | 8 ade4-1.7-23/ade4/R/bca.rlq.R | 8 ade4-1.7-23/ade4/R/betwitdpcoa.R | 20 - ade4-1.7-23/ade4/R/cailliez.R | 4 ade4-1.7-23/ade4/R/coinertia.R | 10 ade4-1.7-23/ade4/R/combine.4thcorner.R | 37 +- ade4-1.7-23/ade4/R/corkdist.R | 22 - ade4-1.7-23/ade4/R/dagnelie.test.R | 8 ade4-1.7-23/ade4/R/disc.R | 6 ade4-1.7-23/ade4/R/discrimin.R | 8 ade4-1.7-23/ade4/R/dist.binary.R | 2 ade4-1.7-23/ade4/R/dist.dudi.R | 4 ade4-1.7-23/ade4/R/dist.ktab.R | 40 +- ade4-1.7-23/ade4/R/dist.neig.R | 2 ade4-1.7-23/ade4/R/dist.quant.R | 4 ade4-1.7-23/ade4/R/divc.R | 4 ade4-1.7-23/ade4/R/dotchart.phylog.R | 26 - ade4-1.7-23/ade4/R/dotcircle.R | 26 - ade4-1.7-23/ade4/R/dpcoa.R | 8 ade4-1.7-23/ade4/R/dudi.R | 311 +++++++++---------- ade4-1.7-23/ade4/R/dudi.acm.R | 8 ade4-1.7-23/ade4/R/dudi.mix.R | 4 ade4-1.7-23/ade4/R/dudi.pco.R | 6 ade4-1.7-23/ade4/R/foucart.R | 16 ade4-1.7-23/ade4/R/fourthcorner.R | 8 ade4-1.7-23/ade4/R/fourthcorner.rlq.R | 4 ade4-1.7-23/ade4/R/is.euclid.R | 2 ade4-1.7-23/ade4/R/kdist.R | 4 ade4-1.7-23/ade4/R/kplot.foucart.R | 10 ade4-1.7-23/ade4/R/kplot.mcoa.R | 20 - ade4-1.7-23/ade4/R/kplot.mfa.R | 12 ade4-1.7-23/ade4/R/kplot.pta.R | 14 ade4-1.7-23/ade4/R/kplot.sepan.R | 22 - ade4-1.7-23/ade4/R/kplot.statis.R | 10 ade4-1.7-23/ade4/R/krandboot.R | 4 ade4-1.7-23/ade4/R/krandtest.R | 28 - ade4-1.7-23/ade4/R/krandxval.R | 4 ade4-1.7-23/ade4/R/lingoes.R | 2 ade4-1.7-23/ade4/R/loocv.R | 14 ade4-1.7-23/ade4/R/mantel.rtest.R | 10 ade4-1.7-23/ade4/R/mbpcaiv.R | 10 ade4-1.7-23/ade4/R/mbpls.R | 6 ade4-1.7-23/ade4/R/mcoa.R | 32 - ade4-1.7-23/ade4/R/mdpcoa.R | 452 ++++++++++++++-------------- ade4-1.7-23/ade4/R/mfa.R | 14 ade4-1.7-23/ade4/R/mld.R | 46 +- ade4-1.7-23/ade4/R/newick2phylog.R | 2 ade4-1.7-23/ade4/R/niche.R | 8 ade4-1.7-23/ade4/R/nipals.R | 6 ade4-1.7-23/ade4/R/orthobasis.R | 4 ade4-1.7-23/ade4/R/p.adjust.4thcorner.R | 10 ade4-1.7-23/ade4/R/pcaiv.R | 26 - 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ade4-1.7-23/ade4/R/scalewt.R | 50 --- ade4-1.7-23/ade4/R/scatter.acm.R | 14 ade4-1.7-23/ade4/R/scatter.dudi.R | 6 ade4-1.7-23/ade4/R/scatter.fca.R | 6 ade4-1.7-23/ade4/R/scatterutil.R | 308 +++++++++---------- ade4-1.7-23/ade4/R/sco.boxplot.R | 44 +- ade4-1.7-23/ade4/R/sco.class.R | 28 - ade4-1.7-23/ade4/R/sco.distri.R | 36 +- ade4-1.7-23/ade4/R/sco.gauss.R | 20 - ade4-1.7-23/ade4/R/sco.label.R | 28 - ade4-1.7-23/ade4/R/sco.match.R | 52 +-- ade4-1.7-23/ade4/R/sco.quant.R | 14 ade4-1.7-23/ade4/R/score.R | 58 +-- ade4-1.7-23/ade4/R/score.acm.R | 20 - ade4-1.7-23/ade4/R/score.coa.R | 78 ++-- ade4-1.7-23/ade4/R/score.mix.R | 46 +- ade4-1.7-23/ade4/R/score.pca.R | 20 - ade4-1.7-23/ade4/R/sepan.R | 12 ade4-1.7-23/ade4/R/statis.R | 16 ade4-1.7-23/ade4/R/summary.4thcorner.R | 2 ade4-1.7-23/ade4/R/symbols.phylog.R | 42 +- ade4-1.7-23/ade4/R/table.cont.R | 26 - ade4-1.7-23/ade4/R/table.dist.R | 6 ade4-1.7-23/ade4/R/table.paint.R | 8 ade4-1.7-23/ade4/R/table.phylog.R | 52 +-- ade4-1.7-23/ade4/R/table.value.R | 96 ++--- ade4-1.7-23/ade4/R/triangle.class.R | 32 - ade4-1.7-23/ade4/R/triangle.plot.R | 94 ++--- ade4-1.7-23/ade4/R/utilities.R | 9 ade4-1.7-23/ade4/R/variance.phylog.R | 12 ade4-1.7-23/ade4/R/varipart.R | 12 ade4-1.7-23/ade4/R/wca.R | 8 ade4-1.7-23/ade4/R/wca.coinertia.R | 8 ade4-1.7-23/ade4/R/wca.rlq.R | 8 ade4-1.7-23/ade4/R/witwitsepan.R | 12 ade4-1.7-23/ade4/build/partial.rdb |binary ade4-1.7-23/ade4/build/vignette.rds |only ade4-1.7-23/ade4/data/atya.rda |binary ade4-1.7-23/ade4/data/buech.rda |binary ade4-1.7-23/ade4/data/elec88.rda |binary ade4-1.7-23/ade4/data/kcponds.rda |binary ade4-1.7-23/ade4/data/mafragh.rda |binary ade4-1.7-23/ade4/data/sarcelles.rda |binary ade4-1.7-23/ade4/data/tintoodiel.rda |binary ade4-1.7-23/ade4/data/zealand.rda |binary ade4-1.7-23/ade4/inst/WORDLIST |only ade4-1.7-23/ade4/inst/doc |only ade4-1.7-23/ade4/man/abouheif.eg.Rd | 2 ade4-1.7-23/ade4/man/ade4-deprecated.Rd | 8 ade4-1.7-23/ade4/man/adegraphicsLoaded.Rd | 14 ade4-1.7-23/ade4/man/aminoacyl.Rd | 3 ade4-1.7-23/ade4/man/apis108.Rd | 2 ade4-1.7-23/ade4/man/area.plot.Rd | 4 ade4-1.7-23/ade4/man/arrival.Rd | 2 ade4-1.7-23/ade4/man/atya.Rd | 3 ade4-1.7-23/ade4/man/avijons.Rd | 5 ade4-1.7-23/ade4/man/bacteria.Rd | 2 ade4-1.7-23/ade4/man/banque.Rd | 2 ade4-1.7-23/ade4/man/buech.Rd | 7 ade4-1.7-23/ade4/man/chatcat.Rd | 2 ade4-1.7-23/ade4/man/dist.neig.Rd | 2 ade4-1.7-23/ade4/man/ecomor.Rd | 4 ade4-1.7-23/ade4/man/elec88.Rd | 3 ade4-1.7-23/ade4/man/figures |only ade4-1.7-23/ade4/man/fourthcorner.Rd | 54 +-- ade4-1.7-23/ade4/man/gearymoran.Rd | 2 ade4-1.7-23/ade4/man/kcponds.Rd | 14 ade4-1.7-23/ade4/man/mafragh.Rd | 6 ade4-1.7-23/ade4/man/meau.Rd | 2 ade4-1.7-23/ade4/man/meaudret.Rd | 2 ade4-1.7-23/ade4/man/newick.eg.Rd | 3 ade4-1.7-23/ade4/man/newick2phylog.Rd | 4 ade4-1.7-23/ade4/man/orthobasis.Rd | 2 ade4-1.7-23/ade4/man/presid2002.Rd | 2 ade4-1.7-23/ade4/man/s.label.Rd | 2 ade4-1.7-23/ade4/man/sarcelles.Rd | 1 ade4-1.7-23/ade4/man/scatter.coa.Rd | 2 ade4-1.7-23/ade4/man/skulls.Rd | 2 ade4-1.7-23/ade4/man/tintoodiel.Rd | 22 - ade4-1.7-23/ade4/man/varipart.Rd | 5 ade4-1.7-23/ade4/man/vegtf.Rd | 4 ade4-1.7-23/ade4/man/westafrica.Rd | 4 ade4-1.7-23/ade4/man/zealand.Rd | 13 ade4-1.7-23/ade4/vignettes |only 181 files changed, 2325 insertions(+), 2043 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play data are also available for the Spanish league. Methods for analysis include a population pyramid,
2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats, team heatmaps,
team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls and offensive rebounds.
Please see Vinue (2020) <doi:10.1089/big.2018.0124> and Vinue (2024) [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.3.3 dated 2025-01-21 and 1.3.4 dated 2025-02-14
DESCRIPTION | 8 ++-- MD5 | 30 +++++++++--------- NAMESPACE | 1 NEWS | 4 ++ R/get_barplot_monthly_stats.R | 19 +++++++---- R/get_heatmap_bb.R | 6 +-- R/get_pop_pyramid.R | 7 +--- inst/doc/BAwiR.R | 20 +++++++----- inst/doc/BAwiR.Rmd | 20 +++++++----- inst/doc/BAwiR.html | 64 ++++++++++++++++++++------------------- inst/doc/BAwiR_pbp.R | 4 +- inst/doc/BAwiR_pbp.Rmd | 6 +-- inst/doc/BAwiR_pbp.html | 12 +++---- man/get_barplot_monthly_stats.Rd | 19 +++++++---- vignettes/BAwiR.Rmd | 20 +++++++----- vignettes/BAwiR_pbp.Rmd | 6 +-- 16 files changed, 138 insertions(+), 108 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [ctb],
Victor Perrier [ctb],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.7.1 dated 2024-09-27 and 0.9.0 dated 2025-02-14
antaresEditObject-0.7.1/antaresEditObject/vignettes/figures |only antaresEditObject-0.9.0/antaresEditObject/DESCRIPTION | 6 antaresEditObject-0.9.0/antaresEditObject/MD5 | 50 ++-- antaresEditObject-0.9.0/antaresEditObject/NEWS.md | 32 ++ antaresEditObject-0.9.0/antaresEditObject/R/API-utils.R | 38 ++- antaresEditObject-0.9.0/antaresEditObject/R/createStudy.R | 75 +++++- antaresEditObject-0.9.0/antaresEditObject/R/editBindingConstraint.R | 23 + antaresEditObject-0.9.0/antaresEditObject/R/playlist.R | 7 antaresEditObject-0.9.0/antaresEditObject/R/updateAdequacySettings.R | 125 +++++----- antaresEditObject-0.9.0/antaresEditObject/R/updateGeneralSettings.R | 23 - antaresEditObject-0.9.0/antaresEditObject/R/updateOutputSettings.R | 24 - antaresEditObject-0.9.0/antaresEditObject/R/utils.R | 32 ++ antaresEditObject-0.9.0/antaresEditObject/README.md | 4 antaresEditObject-0.9.0/antaresEditObject/inst/doc/Antares_new_features_v860.html | 4 antaresEditObject-0.9.0/antaresEditObject/inst/doc/api-variant-management.R | 3 antaresEditObject-0.9.0/antaresEditObject/inst/doc/api-variant-management.Rmd | 4 antaresEditObject-0.9.0/antaresEditObject/inst/doc/api-variant-management.html | 2 antaresEditObject-0.9.0/antaresEditObject/inst/doc/scenario-builder.html | 6 antaresEditObject-0.9.0/antaresEditObject/man/create-study.Rd | 17 + antaresEditObject-0.9.0/antaresEditObject/man/dicoAdequacySettings.Rd |only antaresEditObject-0.9.0/antaresEditObject/man/dot-is_version_9.Rd |only antaresEditObject-0.9.0/antaresEditObject/man/playlist.Rd | 5 antaresEditObject-0.9.0/antaresEditObject/man/updateGeneralSettings.Rd | 2 antaresEditObject-0.9.0/antaresEditObject/man/updateOutputSettings.Rd | 2 antaresEditObject-0.9.0/antaresEditObject/man/update_generaldata_by_section.Rd |only antaresEditObject-0.9.0/antaresEditObject/tests/testthat/test-createStudy.R | 35 ++ antaresEditObject-0.9.0/antaresEditObject/tests/testthat/test-editBindingConstraint.R | 52 ++++ antaresEditObject-0.9.0/antaresEditObject/vignettes/api-variant-management.Rmd | 4 28 files changed, 405 insertions(+), 170 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-19 0.0.6
2023-12-03 0.0.5
2023-01-08 0.0.4
2021-09-23 0.0.3
2020-09-22 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-05 0.1.2
2024-03-25 0.1.1
2024-01-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-19 0.6.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-05 2.0.2
2024-03-11 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-01 0.1.4
2020-06-24 0.1.3
2020-06-23 0.1.2
Title: Group Lasso and Elastic Net Solver for Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire group lasso and group elastic net regularization path for GLMs, multinomial, the Cox model and multi-task Gaussian models. Similar to the R package 'glmnet' in scope of models, and in computational speed. This package provides R bindings to the C++ code underlying the corresponding Python package 'adelie'. These bindings offer a general purpose group elastic net solver,
a wide range of matrix classes that can exploit special structure
to allow large-scale inputs, and an assortment of
generalized linear model classes for fitting various types of data.
The package is an implementation of Yang, J. and Hastie, T. (2024) <doi:10.48550/arXiv.2405.08631>.
Author: James Yang [aut, cph],
Trevor Hastie [aut, cph, cre],
Balasubramanian Narasimhan [aut]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between adelie versions 1.0.2 dated 2024-09-03 and 1.0.6 dated 2025-02-14
adelie-1.0.2/adelie/inst/adelie/adelie/src/adelie_core.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/bcd.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/configs.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/constraint.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/decl.hpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/glm.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/include/adelie_core/bcd/constrained |only adelie-1.0.2/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_lower_upper.hpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/nnqp_low_rank.hpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/io.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/matrix.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/matrix_utils.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/matrx_utils_blas.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/optimization.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/solver.cpp |only adelie-1.0.2/adelie/inst/adelie/adelie/src/state.cpp |only adelie-1.0.6/adelie/DESCRIPTION | 16 adelie-1.0.6/adelie/MD5 | 388 ++- adelie-1.0.6/adelie/NAMESPACE | 13 adelie-1.0.6/adelie/R/adelie-package.R | 1 adelie-1.0.6/adelie/R/glintnet.R |only adelie-1.0.6/adelie/R/glm.R | 24 adelie-1.0.6/adelie/R/matrix.R | 155 + adelie-1.0.6/adelie/R/onAttach.R |only adelie-1.0.6/adelie/R/solver.R | 93 adelie-1.0.6/adelie/R/state.R | 43 adelie-1.0.6/adelie/R/utilities.R | 18 adelie-1.0.6/adelie/R/wrappers.R | 123 - adelie-1.0.6/adelie/build/partial.rdb |binary adelie-1.0.6/adelie/build/vignette.rds |binary adelie-1.0.6/adelie/inst/adelie/adelie/__init__.py | 20 adelie-1.0.6/adelie/inst/adelie/adelie/bcd.py | 76 adelie-1.0.6/adelie/inst/adelie/adelie/configs.py | 2 adelie-1.0.6/adelie/inst/adelie/adelie/constraint.py | 506 ++++ adelie-1.0.6/adelie/inst/adelie/adelie/cv.py | 63 adelie-1.0.6/adelie/inst/adelie/adelie/diagnostic.py | 334 +-- adelie-1.0.6/adelie/inst/adelie/adelie/glm.py | 166 + adelie-1.0.6/adelie/inst/adelie/adelie/io.py | 10 adelie-1.0.6/adelie/inst/adelie/adelie/matrix.py | 562 +++-- adelie-1.0.6/adelie/inst/adelie/adelie/optimization.py | 4 adelie-1.0.6/adelie/inst/adelie/adelie/sklearn.py |only adelie-1.0.6/adelie/inst/adelie/adelie/solver.py | 693 ++++-- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/bcd/unconstrained/newton.hpp | 61 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/configs.hpp | 4 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_base.hpp | 176 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_base.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_box.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_box.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_linear.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_linear.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_one_sided.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/constraint_one_sided.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/constraint/utils.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/glm/glm_base.hpp | 231 +- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/glm/glm_base.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/glm/glm_binomial.hpp | 157 - 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adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_dense.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_interaction.hpp | 635 ----- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_interaction.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_kronecker_eye.hpp | 495 ---- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_kronecker_eye.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_one_hot.hpp | 392 --- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_one_hot.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_phased_ancestry.hpp | 335 --- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_phased_ancestry.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_unphased.hpp | 225 -- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_snp_unphased.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_sparse.hpp | 216 - adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_sparse.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_standardize.hpp | 205 - adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_standardize.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_subset.hpp | 382 --- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_subset.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/matrix/utils.hpp | 137 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/lasso_full.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/linqp_full.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/newton.hpp | 8 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/nnls.hpp | 183 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/nnqp_full.hpp | 186 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/pinball.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/optimization/pinball_full.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_base.hpp | 275 ++ adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_bvls.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_css_cov.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_cov.hpp | 183 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_naive.hpp | 215 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_base.hpp | 28 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_cov.hpp | 162 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_gaussian_pin_naive.hpp | 78 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_glm_naive.hpp | 170 + adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_multigaussian_naive.hpp | 14 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_multiglm_naive.hpp | 17 adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/solver/solver_pinball.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_base.hpp | 333 --- adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_base.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_bvls.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_bvls.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_css_cov.hpp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_css_cov.ipp |only adelie-1.0.6/adelie/inst/adelie/adelie/src/include/adelie_core/state/state_gaussian_cov.hpp | 204 - 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Title: Logging Setup for the 'teal' Family of Packages
Description: Utilizing the 'logger' framework to record events within a
package, specific to 'teal' family of packages. Supports logging
namespaces, hierarchical logging, various log destinations,
vectorization, and more.
Author: Dawid Kaledkowski [aut, cre],
Konrad Pagacz [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.logger versions 0.3.1 dated 2025-01-22 and 0.3.2 dated 2025-02-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/register_handlers.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Code Storage and Execution Class for 'teal' Applications
Description: Introduction of 'qenv' S4 class, that facilitates code
execution and reproducibility in 'teal' applications.
Author: Dawid Kaledkowski [aut, cre],
Aleksander Chlebowski [aut],
Marcin Kosinski [aut],
Pawel Rucki [aut],
Nikolas Burkoff [aut],
Mahmoud Hallal [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Junlue Zhao [aut],
Chendi Liao [rev],
Dony Unardi [rev],
F. [...truncated...]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.code versions 0.6.0 dated 2025-01-27 and 0.6.1 dated 2025-02-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/utils-get_code_dependency.R | 18 ++++++++++-------- inst/doc/qenv.html | 12 ++++++------ tests/testthat/test-qenv_get_code.R | 7 +++++++ 6 files changed, 38 insertions(+), 23 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [aut] ,
Sebastian Jeworutzki [ctb] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Steven Pawley [cre, aut] ,
Floris Vanderhaeghe [ctb]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between rgrass versions 0.5-1 dated 2025-02-03 and 0.5-2 dated 2025-02-14
DESCRIPTION | 10 +++++----- MD5 | 25 +++++++++++++------------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/coerce.html | 14 +++++++------- inst/doc/use.html | 15 +++++++-------- tests/testthat/helper.R | 7 ++----- tests/testthat/setup.R |only tests/testthat/test-execGRASS.R | 5 ----- tests/testthat/test-gmeta.R | 5 ----- tests/testthat/test-initGRASS.R | 5 ----- tests/testthat/test-options.R | 5 ----- tests/testthat/test-read_RAST.R | 5 ----- tests/testthat/test-read_VECT.R | 5 ----- 14 files changed, 38 insertions(+), 67 deletions(-)