Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common descriptive
(univariate) statistics in concise tables available in a
variety of formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois [aut, cre]
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 1.0.1 dated 2022-05-20 and 1.1.0 dated 2025-02-20
summarytools-1.0.1/summarytools/R/parse_args.R |only summarytools-1.0.1/summarytools/inst/includes/scripts/jquery-3.4.0.slim.min.js |only summarytools-1.0.1/summarytools/inst/includes/scripts/jquery-3.4.0.slim.min.map |only summarytools-1.0.1/summarytools/man/parse_args.Rd |only summarytools-1.1.0/summarytools/DESCRIPTION | 14 summarytools-1.1.0/summarytools/MD5 | 165 summarytools-1.1.0/summarytools/NAMESPACE | 234 summarytools-1.1.0/summarytools/NEWS.md | 989 summarytools-1.1.0/summarytools/R/args_validation.R | 1480 summarytools-1.1.0/summarytools/R/cleartmp.R | 94 summarytools-1.1.0/summarytools/R/ctable.R | 1020 summarytools-1.1.0/summarytools/R/define_keywords.R | 617 summarytools-1.1.0/summarytools/R/descr.R | 1368 summarytools-1.1.0/summarytools/R/dfSummary.R | 3237 - summarytools-1.1.0/summarytools/R/examens.R | 56 summarytools-1.1.0/summarytools/R/exams.R | 54 summarytools-1.1.0/summarytools/R/freq.R | 1263 summarytools-1.1.0/summarytools/R/helpers.R | 437 summarytools-1.1.0/summarytools/R/label.R | 298 summarytools-1.1.0/summarytools/R/parse_call.R |only summarytools-1.1.0/summarytools/R/print.list.R | 104 summarytools-1.1.0/summarytools/R/print.stby.R | 97 summarytools-1.1.0/summarytools/R/print.summarytools.R | 4935 +- summarytools-1.1.0/summarytools/R/st_css.R | 146 summarytools-1.1.0/summarytools/R/st_options.R | 801 summarytools-1.1.0/summarytools/R/stby.R | 236 summarytools-1.1.0/summarytools/R/summarytools.R | 68 summarytools-1.1.0/summarytools/R/tabagisme.R | 68 summarytools-1.1.0/summarytools/R/tb.R | 689 summarytools-1.1.0/summarytools/R/tobacco.R | 62 summarytools-1.1.0/summarytools/R/use_custom_lang.R | 168 summarytools-1.1.0/summarytools/R/view.R | 912 summarytools-1.1.0/summarytools/R/what.is.R | 262 summarytools-1.1.0/summarytools/R/zzz.R | 255 summarytools-1.1.0/summarytools/build/vignette.rds |binary summarytools-1.1.0/summarytools/inst/doc/introduction.R | 609 summarytools-1.1.0/summarytools/inst/doc/introduction.Rmd | 2541 - summarytools-1.1.0/summarytools/inst/doc/introduction.html | 8286 ++-- summarytools-1.1.0/summarytools/inst/doc/rmarkdown.R | 173 summarytools-1.1.0/summarytools/inst/doc/rmarkdown.Rmd | 1027 summarytools-1.1.0/summarytools/inst/doc/rmarkdown.html | 5396 +- summarytools-1.1.0/summarytools/inst/includes/favicon.html | 2 summarytools-1.1.0/summarytools/inst/includes/fig-valign.tex | 28 summarytools-1.1.0/summarytools/inst/includes/language_template.csv | 160 summarytools-1.1.0/summarytools/inst/includes/scripts/bootstrap.min.js | 12 summarytools-1.1.0/summarytools/inst/includes/scripts/jquery-3.7.0.slim.min.js |only summarytools-1.1.0/summarytools/inst/includes/scripts/jquery-3.7.0.slim.min.map |only summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap-grid.css | 7438 +-- summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap-grid.min.css | 14 summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap-reboot.css | 662 summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap-reboot.min.css | 16 summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap.css |20076 +++++----- summarytools-1.1.0/summarytools/inst/includes/stylesheets/bootstrap.min.css | 14 summarytools-1.1.0/summarytools/inst/includes/stylesheets/summarytools-global.css | 14 summarytools-1.1.0/summarytools/inst/includes/stylesheets/summarytools.css | 348 summarytools-1.1.0/summarytools/man/cleartmp.Rd | 62 summarytools-1.1.0/summarytools/man/ctable.Rd | 321 summarytools-1.1.0/summarytools/man/define_keywords.Rd | 250 summarytools-1.1.0/summarytools/man/descr.Rd | 289 summarytools-1.1.0/summarytools/man/dfSummary.Rd | 483 summarytools-1.1.0/summarytools/man/examens.Rd | 70 summarytools-1.1.0/summarytools/man/exams.Rd | 68 summarytools-1.1.0/summarytools/man/format_number.Rd | 58 summarytools-1.1.0/summarytools/man/freq.Rd | 334 summarytools-1.1.0/summarytools/man/label.Rd | 87 summarytools-1.1.0/summarytools/man/parse_call.Rd |only summarytools-1.1.0/summarytools/man/print.list.Rd | 161 summarytools-1.1.0/summarytools/man/print.stby.Rd | 146 summarytools-1.1.0/summarytools/man/print.summarytools.Rd | 315 summarytools-1.1.0/summarytools/man/st_css.Rd | 90 summarytools-1.1.0/summarytools/man/st_options.Rd | 549 summarytools-1.1.0/summarytools/man/stby.Rd | 91 summarytools-1.1.0/summarytools/man/summarytools-package.Rd | 104 summarytools-1.1.0/summarytools/man/tabagisme.Rd | 82 summarytools-1.1.0/summarytools/man/tb.Rd | 123 summarytools-1.1.0/summarytools/man/tobacco.Rd | 76 summarytools-1.1.0/summarytools/man/unlabel.Rd | 43 summarytools-1.1.0/summarytools/man/use_custom_lang.Rd | 48 summarytools-1.1.0/summarytools/man/view.Rd | 198 summarytools-1.1.0/summarytools/man/what.is.Rd | 114 summarytools-1.1.0/summarytools/man/zap_attr.Rd |only summarytools-1.1.0/summarytools/vignettes/assets/dfSummary_in_RStudio_Viewer.png |binary summarytools-1.1.0/summarytools/vignettes/assets/dfSummary_md.png |binary summarytools-1.1.0/summarytools/vignettes/assets/exclamation-diamond.svg | 6 summarytools-1.1.0/summarytools/vignettes/assets/lightbulb.svg | 4 summarytools-1.1.0/summarytools/vignettes/assets/vignette.css | 426 summarytools-1.1.0/summarytools/vignettes/introduction.Rmd | 2541 - summarytools-1.1.0/summarytools/vignettes/rmarkdown.Rmd | 1027 88 files changed, 38571 insertions(+), 36540 deletions(-)
Title: Tools to Conduct Meteorological Normalisation and Counterfactual
Modelling for Air Quality Data
Description: An integrated set of tools to allow data users to conduct
meteorological normalisation and counterfactual modelling for air quality
data. The meteorological normalisation technique uses predictive random
forest models to remove variation of pollutant concentrations so trends and
interventions can be explored in a robust way. For examples, see
Grange et al. (2018) <doi:10.5194/acp-18-6223-2018> and
Grange and Carslaw (2019) <doi:10.1016/j.scitotenv.2018.10.344>. The random
forest models can also be used for counterfactual or business as usual (BAU)
modelling by using the models to predict, from the model's perspective, the
future. For an example, see Grange et al. (2021) <doi:10.5194/acp-2020-1171>.
Author: Stuart K. Grange [cre, aut]
Maintainer: Stuart K. Grange <s.k.grange@gmail.com>
Diff between rmweather versions 0.2.6 dated 2024-06-04 and 0.2.62 dated 2025-02-20
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- R/rmw_nest_for_modelling.R | 7 ++++--- R/rmw_partial_dependencies.R | 2 +- inst/CITATION | 6 +++--- man/rmw_partial_dependencies.Rd | 2 +- 6 files changed, 21 insertions(+), 20 deletions(-)
Title: Imports, Processes, and Visualizes Biomechanical Pressure Data
Description: Allows biomechanical pressure data from a range of systems to be imported and processed in a reproducible manner. Automatic and manual tools are included to let the user define regions (masks) to be analyzed. Also includes functions for visualizing and animating pressure data. Example methods are described in Shi et al., (2022) <doi:10.1038/s41598-022-19814-0>, Lee et al., (2014) <doi:10.1186/1757-1146-7-18>, van der Zward et al., (2014) <doi:10.1186/1757-1146-7-20>, Najafi et al., (2010) <doi:10.1016/j.gaitpost.2009.09.003>, Cavanagh and Rodgers (1987) <doi:10.1016/0021-9290(87)90255-7>.
Author: Scott Telfer [aut, cre, cph] ,
Ellen Li [aut]
Maintainer: Scott Telfer <scott.telfer@gmail.com>
Diff between pressuRe versions 0.2.4 dated 2024-04-10 and 0.2.5 dated 2025-02-20
DESCRIPTION | 10 MD5 | 26 NAMESPACE | 11 NEWS.md | 4 R/pressuRe_functions.R | 1339 ++++++++++++++++++++++++++---------------------- build/partial.rdb |binary man/cpei.Rd | 4 man/create_mask_auto.Rd | 29 - man/load_emed.Rd | 7 man/load_footscan.Rd | 9 man/load_tekscan.Rd | 9 man/load_xsensor.Rd | 9 man/plot_pressure.Rd | 3 man/select_steps.Rd | 2 14 files changed, 806 insertions(+), 656 deletions(-)
Title: Kernel Distance Metric Learning for Mixed-Type Data
Description: Distance metrics for mixed-type data consisting of continuous, nominal, and ordinal variables. This methodology uses additive and product kernels to calculate similarity functions and metrics, and selects variables relevant to the underlying distance through bandwidth selection via maximum similarity cross-validation. These methods can be used in any distance-based algorithm, such as distance-based clustering. For further details, we refer the reader to Ghashti and Thompson (2024) <doi:10.1007/s00357-024-09493-z> for dkps() methodology, and Ghashti (2024) <doi:10.14288/1.0443975> for dkss() methodology.
Author: John R. J. Thompson [aut, cre]
,
Jesse S. Ghashti [aut]
Maintainer: John R. J. Thompson <john.thompson@ubc.ca>
Diff between kdml versions 1.1.0 dated 2024-09-20 and 1.1.1 dated 2025-02-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/dkps.R | 2 +- R/dkss.R | 2 +- R/kss.R | 2 +- README.md | 34 +++++++++++++++++----------------- build/vignette.rds |binary inst/doc/kdml.html | 2 +- 8 files changed, 32 insertions(+), 32 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.1.3-2 dated 2025-01-24 and 1.2.0 dated 2025-02-20
duckdb-1.1.3-2/duckdb/R/substrait.R |only duckdb-1.1.3-2/duckdb/man/duckdb_get_substrait.Rd |only duckdb-1.1.3-2/duckdb/man/duckdb_get_substrait_json.Rd |only duckdb-1.1.3-2/duckdb/man/duckdb_prepare_substrait.Rd |only duckdb-1.1.3-2/duckdb/man/duckdb_prepare_substrait_json.Rd |only duckdb-1.2.0/duckdb/DESCRIPTION | 6 duckdb-1.2.0/duckdb/MD5 | 68 ++-- duckdb-1.2.0/duckdb/NAMESPACE | 4 duckdb-1.2.0/duckdb/NEWS.md | 28 + duckdb-1.2.0/duckdb/R/backend-dbplyr__duckdb_connection.R | 6 duckdb-1.2.0/duckdb/R/cpp11.R | 16 duckdb-1.2.0/duckdb/R/is_interactive.R |only duckdb-1.2.0/duckdb/R/progress_display.R |only duckdb-1.2.0/duckdb/R/rethrow-gen.R | 40 -- duckdb-1.2.0/duckdb/R/zzz.R | 5 duckdb-1.2.0/duckdb/README.md | 2 duckdb-1.2.0/duckdb/src/Makevars | 2 duckdb-1.2.0/duckdb/src/Makevars.win | 2 duckdb-1.2.0/duckdb/src/connection.cpp | 51 +++ duckdb-1.2.0/duckdb/src/cpp11.cpp | 33 -- duckdb-1.2.0/duckdb/src/database.cpp | 1 duckdb-1.2.0/duckdb/src/duckdb.tar.xz |binary duckdb-1.2.0/duckdb/src/include/r_progress_bar_display.hpp |only duckdb-1.2.0/duckdb/src/include/rapi.hpp | 8 duckdb-1.2.0/duckdb/src/include/reltoaltrep.hpp | 26 + duckdb-1.2.0/duckdb/src/include/sources.mk | 2 duckdb-1.2.0/duckdb/src/relational.cpp | 2 duckdb-1.2.0/duckdb/src/reltoaltrep.cpp | 164 ++++------ duckdb-1.2.0/duckdb/src/rfuns.cpp | 6 duckdb-1.2.0/duckdb/src/scan.cpp | 6 duckdb-1.2.0/duckdb/src/statement.cpp | 78 ---- duckdb-1.2.0/duckdb/src/types.cpp | 2 duckdb-1.2.0/duckdb/src/utils.cpp | 16 duckdb-1.2.0/duckdb/tests/testthat/_snaps/relational.md | 19 - duckdb-1.2.0/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R | 13 duckdb-1.2.0/duckdb/tests/testthat/test-connect.R | 9 duckdb-1.2.0/duckdb/tests/testthat/test-date.R |only duckdb-1.2.0/duckdb/tests/testthat/test-parquet.R | 32 + duckdb-1.2.0/duckdb/tests/testthat/test-progress_display.R |only duckdb-1.2.0/duckdb/tests/testthat/test-relational.R | 6 40 files changed, 320 insertions(+), 333 deletions(-)
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, organizational network analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.5.5 dated 2024-11-19 and 0.6.0 dated 2025-02-20
DESCRIPTION | 10 - MD5 | 88 +++++----- NAMESPACE | 5 NEWS.md | 144 +++++++++-------- R/check_query.R | 1 R/collaboration_area.R | 8 R/create_boxplot.R | 42 +++-- R/create_period_scatter.R | 10 - R/create_stacked.R | 2 R/globals.R | 18 +- R/hrvar_count_all.R | 9 - R/identify_habit.R |only R/identify_privacythreshold.R | 4 R/identify_shifts.R | 12 - R/import_query.R | 44 ----- R/keymetrics_scan.R | 19 -- R/one2one_dist.R | 5 R/one2one_fizz.R | 4 R/one2one_freq.R | 18 +- R/one2one_line.R | 4 R/one2one_rank.R | 4 R/one2one_sum.R | 4 R/one2one_trend.R | 4 R/pq_data.R | 232 +++++++++------------------- R/prep_query.R |only R/us_to_space.R | 2 README.md | 7 data/pq_data.rda |binary man/collaboration_area.Rd | 2 man/copy_df.Rd | 3 man/create_boxplot.Rd | 22 ++ man/create_dt.Rd | 3 man/create_period_scatter.Rd | 10 - man/export.Rd | 3 man/identify_habit.Rd |only man/identify_privacythreshold.Rd | 2 man/identify_shifts.Rd | 12 - man/import_query.Rd | 3 man/keymetrics_scan.Rd | 14 - man/one2one_line.Rd | 2 man/one2one_rank.Rd | 2 man/one2one_trend.Rd | 2 man/pq_data.Rd | 230 ++++++++------------------- man/prep_query.Rd |only man/us_to_space.Rd | 2 man/xicor.Rd | 106 ++++++------ tests/testthat/test_create_period_scatter.R | 16 - 47 files changed, 515 insertions(+), 619 deletions(-)
Title: Efficient Implementation of Kendall's Correlation Coefficient
Computation
Description: The computational complexity of the implemented algorithm for
Kendall's correlation is O(n log(n)), which is faster than the base R
implementation with a computational complexity of O(n^2). For small vectors
(i.e., less than 100 observations), the time difference is negligible.
However, for larger vectors, the speed difference can be substantial and the
numerical difference is minimal. The references are
Knight (1966) <doi:10.2307/2282833>,
Abrevaya (1999) <doi:10.1016/S0165-1765(98)00255-9>,
Christensen (2005) <doi:10.1007/BF02736122> and
Emara (2024) <https://learningcpp.org/>.
This implementation is described in
Vargas Sepulveda (2024) <doi:10.48550/arXiv.2408.09618>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Loader Catherine [ctb] ),
Ross Ihaka [ctb] )
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between kendallknight versions 0.5.0 dated 2025-01-23 and 0.6.0 dated 2025-02-20
kendallknight-0.5.0/kendallknight/inst/rjournal |only kendallknight-0.6.0/kendallknight/DESCRIPTION | 12 kendallknight-0.6.0/kendallknight/MD5 | 32 -- kendallknight-0.6.0/kendallknight/NEWS.md | 5 kendallknight-0.6.0/kendallknight/R/kendall_correlation.R | 19 - kendallknight-0.6.0/kendallknight/README.md | 49 --- kendallknight-0.6.0/kendallknight/inst/WORDLIST | 2 kendallknight-0.6.0/kendallknight/inst/doc/usage.R | 28 ++ kendallknight-0.6.0/kendallknight/inst/doc/usage.Rmd | 79 ------ kendallknight-0.6.0/kendallknight/inst/doc/usage.html | 125 ++++------ kendallknight-0.6.0/kendallknight/inst/references.bib | 2 kendallknight-0.6.0/kendallknight/man/kendallknight-package.Rd | 6 kendallknight-0.6.0/kendallknight/tests/testthat/test-kendall.R | 18 - kendallknight-0.6.0/kendallknight/vignettes/usage.Rmd | 79 ------ 14 files changed, 141 insertions(+), 315 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut],
Sean Hughes [rev],
Jason Taylor [aut, cre],
Helen Miller [aut],
CAVD DataSpace [cph]
Maintainer: Jason Taylor <jmtaylor@fredhutch.org>
Diff between DataSpaceR versions 0.7.6 dated 2022-06-24 and 0.7.7 dated 2025-02-20
DESCRIPTION | 8 MD5 | 36 +-- NEWS.md | 5 R/DataSpaceConnection.R | 37 +-- R/DataSpaceMab.R | 33 -- R/helpers.R | 44 +++ README.md | 2 build/vignette.rds |binary inst/doc/DataSpaceR.html | 344 ++++++++++++++++------------- inst/doc/Monoconal_Antibody_Data.html | 284 +++++++++++++----------- inst/doc/Non_Integrated_Datasets.html | 190 +++++++++------- inst/doc/Publication_Data.html | 294 ++++++++++++++----------- inst/doc/Virus_Name_Mapping_Tables.html | 372 +++++++++++++++++--------------- man/DataSpaceConnection.Rd | 60 ++--- man/DataSpaceMab.Rd | 30 +- man/DataSpaceStudy.Rd | 48 ++-- tests/testthat/test-connection.R | 4 tests/testthat/test-mab.R | 26 +- tests/testthat/test-study.R | 45 --- 19 files changed, 1031 insertions(+), 831 deletions(-)
Title: Import 'REDATAM' Files
Description: Import 'REDATAM' formats into R via the 'Open REDATAM' C++ library.
The full context of this project and details about the implementation are
available in <doi:10.1017/dap.2025.4> (Open Access).
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Lital Barkai [aut],
Ivan Krylov [ctb],
Arseny Kapoulkine [ctb] ,
Oriental Republic of Uruguay [dtc]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between redatam versions 2.0.4 dated 2024-11-15 and 2.1.1 dated 2025-02-20
redatam-2.0.4/redatam/src/redatamlib/entities/RedatamDatabase.cpp |only redatam-2.0.4/redatam/src/redatamlib/entities/RedatamDatabase.hpp |only redatam-2.0.4/redatam/src/redatamlib/utils.cpp |only redatam-2.0.4/redatam/src/redatamlib/utils.hpp |only redatam-2.1.1/redatam/DESCRIPTION | 12 redatam-2.1.1/redatam/MD5 | 76 redatam-2.1.1/redatam/NEWS.md | 7 redatam-2.1.1/redatam/build/partial.rdb |only redatam-2.1.1/redatam/build/vignette.rds |binary redatam-2.1.1/redatam/configure | 2 redatam-2.1.1/redatam/inst/CITATION |only redatam-2.1.1/redatam/inst/doc/reading-redatam-in-r.Rmd | 10 redatam-2.1.1/redatam/inst/doc/reading-redatam-in-r.html | 8 redatam-2.1.1/redatam/man/figures/logo.svg | 978 redatam-2.1.1/redatam/man/redatam-package.Rd | 2 redatam-2.1.1/redatam/src/Makevars.in | 4 redatam-2.1.1/redatam/src/Makevars.win | 6 redatam-2.1.1/redatam/src/main.cpp | 11 redatam-2.1.1/redatam/src/redatamlib/database |only redatam-2.1.1/redatam/src/redatamlib/entities/Entity.cpp | 33 redatam-2.1.1/redatam/src/redatamlib/entities/Entity.hpp | 21 redatam-2.1.1/redatam/src/redatamlib/entities/Variable.cpp | 164 redatam-2.1.1/redatam/src/redatamlib/entities/Variable.hpp | 39 redatam-2.1.1/redatam/src/redatamlib/exporters/ParentIDCalculator.cpp | 3 redatam-2.1.1/redatam/src/redatamlib/exporters/ParentIDCalculator.hpp | 8 redatam-2.1.1/redatam/src/redatamlib/exporters/RListExporter.cpp | 159 redatam-2.1.1/redatam/src/redatamlib/exporters/RListExporter.hpp | 32 redatam-2.1.1/redatam/src/redatamlib/readers/BitArrayReader.cpp | 15 redatam-2.1.1/redatam/src/redatamlib/readers/BitArrayReader.hpp | 12 redatam-2.1.1/redatam/src/redatamlib/readers/ByteArrayReader.cpp | 130 redatam-2.1.1/redatam/src/redatamlib/readers/ByteArrayReader.hpp | 24 redatam-2.1.1/redatam/src/redatamlib/readers/FuzzyEntityParser.cpp | 56 redatam-2.1.1/redatam/src/redatamlib/readers/FuzzyEntityParser.hpp | 12 redatam-2.1.1/redatam/src/redatamlib/readers/FuzzyVariableParser.cpp | 104 redatam-2.1.1/redatam/src/redatamlib/readers/FuzzyVariableParser.hpp | 7 redatam-2.1.1/redatam/src/redatamlib/readers/XMLParser.cpp | 89 redatam-2.1.1/redatam/src/redatamlib/readers/XMLParser.hpp | 7 redatam-2.1.1/redatam/src/redatamlib/utils |only redatam-2.1.1/redatam/src/vendor/pugiconfig.hpp | 9 redatam-2.1.1/redatam/src/vendor/pugixml.cpp |24887 +++++----- redatam-2.1.1/redatam/src/vendor/pugixml.hpp | 2738 - redatam-2.1.1/redatam/vignettes/reading-redatam-in-r.Rmd | 10 42 files changed, 14391 insertions(+), 15284 deletions(-)
Title: Constrained Regression for Survey Data
Description: Domain mean estimation with monotonicity or block monotone constraints. See Xu X, Meyer MC and Opsomer JD (2021)<doi:10.1016/j.jspi.2021.02.004> for more details.
Author: Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between csurvey versions 1.9 dated 2023-09-23 and 1.10 dated 2025-02-20
ChangeLog | 3 +-- DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- R/csurvey.R | 8 ++++---- man/csvy.Rd | 10 +++++----- 5 files changed, 20 insertions(+), 20 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is detailed
in Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.48550/arXiv.2408.11074>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between cpp11armadillo versions 0.4.1 dated 2024-12-19 and 0.4.4 dated 2025-02-20
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More information about cpp11armadillo at CRAN
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Title: Construct and Visualize TDA Mapper Graphs
Description: Topological data analysis (TDA) is a method of data analysis that
uses techniques from topology to analyze high-dimensional data. Here we
implement Mapper, an algorithm from this area developed by Singh, Mémoli and
Carlsson (2007) which generalizes the concept of a
Reeb graph <https://en.wikipedia.org/wiki/Reeb_graph>.
Author: George Clare Kennedy [aut, cre]
Maintainer: George Clare Kennedy <george-clarekennedy@uiowa.edu>
Diff between mappeR versions 2.0.1 dated 2025-02-19 and 2.0.2 dated 2025-02-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/clusterer_farm.R | 7 +++---- 4 files changed, 13 insertions(+), 10 deletions(-)
Title: Estimate Incidence and Prevalence using the OMOP Common Data
Model
Description: Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.
Author: Edward Burn [aut, cre] ,
Berta Raventos [aut] ,
Marti Catala [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Ger Inberg [ctb] ,
Kim Lopez [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between IncidencePrevalence versions 1.0.0 dated 2025-01-16 and 1.1.0 dated 2025-02-20
DESCRIPTION | 10 MD5 | 78 NEWS.md | 10 R/estimateIncidence.R | 1067 +- R/estimatePrevalence.R | 4 R/generateDenominatorCohortSet.R | 75 R/getDenominatorCohorts.R | 911 - R/getIncidence.R | 38 R/getPrevalence.R | 2 R/inputValidation.R | 4 R/plotting.R | 109 R/tables.R | 3 R/tidyResults.R | 18 README.md | 26 inst/doc/a01_Introduction_to_IncidencePrevalence.html | 22 inst/doc/a02_Creating_denominator_populations.R | 4 inst/doc/a02_Creating_denominator_populations.Rmd | 848 - inst/doc/a02_Creating_denominator_populations.html | 13 inst/doc/a03_Creating_target_denominator_populations.R | 37 inst/doc/a03_Creating_target_denominator_populations.Rmd | 58 inst/doc/a03_Creating_target_denominator_populations.html | 283 inst/doc/a04_Calculating_prevalence.html | 144 inst/doc/a05_Calculating_incidence.html | 136 inst/doc/a06_benchmark.html | 238 man/asIncidenceResult.Rd | 4 man/asPrevalenceResult.Rd | 4 man/generateTargetDenominatorCohortSet.Rd | 10 man/tablePrevalence.Rd | 3 tests/manual/test-eunomia.R | 462 tests/testthat/test-benchmarkIncidencePrevalence.R | 151 tests/testthat/test-dateUtilities.R | 251 tests/testthat/test-estimateIncidence.R | 7059 +++++++------- tests/testthat/test-estimatePrevalence.R | 3050 +++--- tests/testthat/test-generateDenominatorCohortSet.R | 4534 ++++---- tests/testthat/test-getStudyDays.R | 520 - tests/testthat/test-plotting.R | 781 - tests/testthat/test-tables.R | 328 tests/testthat/test-tidyResults.R | 12 vignettes/a02_Creating_denominator_populations.Rmd | 848 - vignettes/a03_Creating_target_denominator_populations.Rmd | 58 40 files changed, 11554 insertions(+), 10659 deletions(-)
More information about IncidencePrevalence at CRAN
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Title: Data Quality in Epidemiological Research
Description: Data quality assessments guided by a
'data quality framework introduced by Schmidt and colleagues, 2021'
<doi:10.1186/s12874-021-01252-7> target the
data quality dimensions integrity, completeness, consistency, and
accuracy. The scope of applicable functions rests on the
availability of extensive metadata which can be provided in
spreadsheet tables. Either standardized (e.g. as 'html5' reports) or
individually tailored reports can be generated. For an introduction
into the specification of corresponding metadata, please refer to the
'package website'
<https://dataquality.qihs.uni-greifswald.de/VIN_Annotation_of_Metadata.html>.
Author: University Medicine Greifswald [cph],
Elisa Kasbohm [aut] ,
Joany Marino [aut] ,
Elena Salogni [aut] ,
Adrian Richter [aut] ,
Carsten Oliver Schmidt [aut] ,
Stephan Struckmann [aut, cre] ,
German Research Foundation [fnd],
National Research Data Inf [...truncated...]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>
Diff between dataquieR versions 2.1.0 dated 2024-03-29 and 2.5.0 dated 2025-02-20
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dataquieR-2.5.0/dataquieR/tests/testthat/test-util_check_group_levels.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_contradiction_rules.R | 56 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_correct_variable_use.R | 39 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_detect_cores.R | 4 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_dichotomize.R | 137 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_ds1_eval_env.R | 5 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_finalize_sizing_hints.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_find_external_functions_in_stacktrace.R | 4 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_get_code_list.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_has_no_group_vars.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_heatmap_1th.R | 11 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_interpret_limits.R | 7 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_is_try_error.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_looks_like_missing.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_map_all.R | 51 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_map_by_largest_prefix.R | 4 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_no_value_labels.R | 14 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_par_pmap.R | 7 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_parallel_futures.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_parse_assignments.R | 4 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_parse_redcap_rule.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_plot_categorical_vars.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_plot_figure_no_plotly.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_plot_figure_plotly.R | 4 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_queue_cluster.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_remove_empty_rows.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_remove_na_records.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_render_table_dataquieR_summary.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_replace_codes_by_na.R | 5 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_split_val_tab.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_unit2baseunit.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_user_hint.R | 2 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_validate_known_meta.R | 64 dataquieR-2.5.0/dataquieR/tests/testthat/test-util_varcomp_robust.R |only dataquieR-2.5.0/dataquieR/tests/testthat/test-util_warning.R | 2 dataquieR-2.5.0/dataquieR/vignettes/DQ-report-example.Rmd | 276 800 files changed, 24731 insertions(+), 11764 deletions(-)
More information about UAHDataScienceO at CRAN
Permanent link
Title: Moment Condition Based Estimation of Linear Dynamic Panel Data
Models
Description: Linear dynamic panel data modeling based on linear and
nonlinear moment conditions as proposed by
Holtz-Eakin, Newey, and Rosen (1988) <doi:10.2307/1913103>,
Ahn and Schmidt (1995) <doi:10.1016/0304-4076(94)01641-C>,
and Arellano and Bover (1995) <doi:10.1016/0304-4076(94)01642-D>.
Estimation of the model parameters relies on the Generalized
Method of Moments (GMM) and instrumental variables (IV) estimation,
numerical optimization (when nonlinear moment conditions are
employed) and the computation of closed form solutions (when
estimation is based on linear moment conditions). One-step,
two-step and iterated estimation is available. For inference
and specification
testing, Windmeijer (2005) <doi:10.1016/j.jeconom.2004.02.005>
and doubly corrected standard errors
(Hwang, Kang, Lee, 2021 <doi:10.1016/j.jeconom.2020.09.010>)
are available. Additionally, serial correlation tests, tests for
overidentification, and Wald tests are provided. Functions for
visualiz [...truncated...]
Author: Markus Fritsch [aut, cre],
Joachim Schnurbus [aut],
Andrew Adrian Yu Pua [aut]
Maintainer: Markus Fritsch <Markus.Fritsch@uni-Passau.de>
Diff between pdynmc versions 0.9.11 dated 2024-07-12 and 0.9.12 dated 2025-02-20
pdynmc-0.9.11/pdynmc/vignettes/pdynmc-intro.pdf |only pdynmc-0.9.11/pdynmc/vignettes/pdynmc-intro.pdf.asis.txt |only pdynmc-0.9.12/pdynmc/DESCRIPTION | 18 pdynmc-0.9.12/pdynmc/MD5 | 39 pdynmc-0.9.12/pdynmc/NAMESPACE | 1 pdynmc-0.9.12/pdynmc/NEWS.md | 31 pdynmc-0.9.12/pdynmc/R/pdynmc_estFct.R | 26 pdynmc-0.9.12/pdynmc/R/pdynmc_fitMethods.R | 37 pdynmc-0.9.12/pdynmc/R/pdynmc_instMatFcts.R | 6 pdynmc-0.9.12/pdynmc/R/pdynmc_specTestFcst.R | 263 ++- pdynmc-0.9.12/pdynmc/build/partial.rdb |binary pdynmc-0.9.12/pdynmc/build/vignette.rds |binary pdynmc-0.9.12/pdynmc/inst/CITATION | 6 pdynmc-0.9.12/pdynmc/inst/THANKS | 6 pdynmc-0.9.12/pdynmc/inst/doc/pdynmc-intro.pdf |only pdynmc-0.9.12/pdynmc/inst/doc/pdynmc-intro.pdf.asis |only pdynmc-0.9.12/pdynmc/inst/doc/pdynmc-introLong.pdf |binary pdynmc-0.9.12/pdynmc/inst/doc/pdynmc-pres-in-a-nutshell.pdf |binary pdynmc-0.9.12/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksABdata.R | 32 pdynmc-0.9.12/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksBB2000data.R |only pdynmc-0.9.12/pdynmc/man/pdynmc.Rd | 870 +++++----- pdynmc-0.9.12/pdynmc/man/plot.pdynmc.Rd | 292 +-- pdynmc-0.9.12/pdynmc/man/sargan.fct.Rd |only pdynmc-0.9.12/pdynmc/vignettes/pdynmc-intro.pdf.asis |only 24 files changed, 917 insertions(+), 710 deletions(-)
Title: Filtering, Visualization and Analysis of Eye Tracking Data
Description: Functions for analysing eye tracking data, including event detection (I-VT, I-DT and two means clustering),
visualizations and area of interest (AOI) based analyses. See separate documentation for each function. The principles underlying I-VT and I-DT filters are described in
Salvucci & Goldberg (2000,\doi{10.1145/355017.355028}). Two-means clustering is described in Hessels et al. (2017, \doi{10.3758/s13428-016-0822-1}).
Author: Johan Lundin Kleberg [aut, cre]
Maintainer: Johan Lundin Kleberg <johan.lundin.kleberg@su.se>
Diff between kollaR versions 1.0.2 dated 2025-02-07 and 1.0.4 dated 2025-02-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/AnalysisFunctions.R | 27 +++++++++++++++++++++++++++ R/VisualizationFunctions.R | 24 +++++++++++++----------- 4 files changed, 46 insertions(+), 17 deletions(-)
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autosuggest addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing', 'Matrix Routing' and 'Isoline Routing' APIs;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) request intermodal routes using the 'Intermodal Routing' API;
(6) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre] ,
Daniel Possenriede [ctb]
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 1.0.1 dated 2024-11-27 and 1.1.0 dated 2025-02-20
DESCRIPTION | 6 MD5 | 124 NEWS.md | 377 - R/autosuggest.R | 214 - R/checks.R | 7 R/connection.R | 560 +- R/flow.R | 276 - R/geocode.R | 394 - R/incident.R | 330 - R/intermodal_route.R | 480 +- R/isoline.R | 539 +- R/reverse_geocode.R | 336 - R/route.R | 614 +-- R/route_matrix.R | 478 +- R/station.R | 292 - R/utils.R | 17 R/weather.R | 554 +- README.md | 286 - build/vignette.rds |binary inst/doc/authentication.R | 26 inst/doc/authentication.Rmd | 178 inst/doc/authentication.html | 977 ++-- inst/doc/geocoder.R | 188 inst/doc/geocoder.html | 1195 ++--- inst/doc/intermodal.R | 76 inst/doc/intermodal.Rmd | 128 inst/doc/intermodal.html | 1429 +++---- inst/doc/routing.R | 176 inst/doc/routing.Rmd | 260 - inst/doc/routing.html | 1903 ++++----- inst/doc/traffic.R | 100 inst/doc/traffic.Rmd | 166 inst/doc/traffic.html | 835 ++-- inst/doc/transit.R | 168 inst/doc/transit.Rmd | 266 - inst/doc/transit.html | 1977 ++++----- inst/doc/weather.R | 236 - inst/doc/weather.Rmd | 352 - inst/doc/weather.html | 4677 +++++++++++------------ man/isoline.Rd | 5 man/route.Rd | 3 man/route_matrix.Rd | 116 tests/testthat/test-autosuggest.R | 14 tests/testthat/test-connection.R | 28 tests/testthat/test-flow.R | 14 tests/testthat/test-geocode.R | 38 tests/testthat/test-incident.R | 14 tests/testthat/test-intermodal_route.R | 14 tests/testthat/test-isoline.R | 19 tests/testthat/test-reverse_geocode.R | 34 tests/testthat/test-route.R | 14 tests/testthat/test-route_matrix.R | 14 tests/testthat/test-station.R | 14 tests/testthat/test-weather_alerts.R | 14 tests/testthat/test-weather_forecast_astronomy.R | 14 tests/testthat/test-weather_forecast_hourly.R | 14 tests/testthat/test-weather_observation.R | 14 vignettes/authentication.Rmd | 178 vignettes/intermodal.Rmd | 128 vignettes/routing.Rmd | 260 - vignettes/traffic.Rmd | 166 vignettes/transit.Rmd | 266 - vignettes/weather.Rmd | 352 - 63 files changed, 11513 insertions(+), 11431 deletions(-)
Title: Parse 'LaTeX' Code
Description: Exports an enhanced version of the tools::parseLatex()
function to handle 'LaTeX' syntax more accurately. Also
includes numerous functions for searching and modifying
'LaTeX' source.
Author: Duncan Murdoch [aut, cre],
The R Core Team [ctb, cph]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between parseLatex versions 0.2.1 dated 2025-02-11 and 0.3.0 dated 2025-02-20
parseLatex-0.2.1/parseLatex/src/Makevars |only parseLatex-0.2.1/parseLatex/src/Makevars.ucrt |only parseLatex-0.3.0/parseLatex/DESCRIPTION | 6 parseLatex-0.3.0/parseLatex/MD5 | 28 parseLatex-0.3.0/parseLatex/NEWS.md | 18 parseLatex-0.3.0/parseLatex/R/parseLatex.R | 36 parseLatex-0.3.0/parseLatex/cleanup |only parseLatex-0.3.0/parseLatex/configure |only parseLatex-0.3.0/parseLatex/inst/doc/parseLatex.R | 7 parseLatex-0.3.0/parseLatex/inst/doc/parseLatex.Rmd | 14 parseLatex-0.3.0/parseLatex/inst/doc/parseLatex.html | 19 parseLatex-0.3.0/parseLatex/man/parseLatex_fn.Rd | 23 parseLatex-0.3.0/parseLatex/src/Makevars.in |only parseLatex-0.3.0/parseLatex/src/Makevars.win |only parseLatex-0.3.0/parseLatex/src/gramLatex.tab.c | 760 ++++++++++++------- parseLatex-0.3.0/parseLatex/src/parser/gramLatex.y | 296 ++++++- parseLatex-0.3.0/parseLatex/tests/tools_bugs.R | 11 parseLatex-0.3.0/parseLatex/vignettes/parseLatex.Rmd | 14 18 files changed, 872 insertions(+), 360 deletions(-)
Title: Numerical Association Rule Mining using Population-Based
Nature-Inspired Algorithms
Description: Framework is devoted to mining numerical association rules through the
utilization of nature-inspired algorithms for optimization. Drawing inspiration
from the 'NiaARM' 'Python' and the 'NiaARM' 'Julia' packages, this repository
introduces the capability to perform numerical association rule mining in
the R programming language.
Fister Jr., Iglesias, Galvez, Del Ser, Osaba and Fister (2018) <doi:10.1007/978-3-030-03493-1_9>.
Author: Iztok Jr. Fister [aut, cre, cph]
Maintainer: Iztok Jr. Fister <iztok@iztok.space>
Diff between niarules versions 0.1.0 dated 2024-03-09 and 0.2.0 dated 2025-02-20
niarules-0.1.0/niarules/man/add_association_rule.Rd |only niarules-0.1.0/niarules/man/feature_borders.Rd |only niarules-0.1.0/niarules/man/fixBorders.Rd |only niarules-0.1.0/niarules/man/print_rule_parts.Rd |only niarules-0.1.0/niarules/tests/testthat/test-metrics.R |only niarules-0.1.0/niarules/tests/testthat/test-metrics2.R |only niarules-0.2.0/niarules/DESCRIPTION | 6 niarules-0.2.0/niarules/MD5 | 54 +- niarules-0.2.0/niarules/NAMESPACE | 5 niarules-0.2.0/niarules/R/dataset.R | 89 ++- niarules-0.2.0/niarules/R/de.R | 117 ++-- niarules-0.2.0/niarules/R/evaluate.R | 258 +++++----- niarules-0.2.0/niarules/R/output.R | 116 ++-- niarules-0.2.0/niarules/R/rs.R | 1 niarules-0.2.0/niarules/R/rule.R | 7 niarules-0.2.0/niarules/README.md | 150 ++++- niarules-0.2.0/niarules/inst/examples/basic.R | 12 niarules-0.2.0/niarules/man/cut_point.Rd | 2 niarules-0.2.0/niarules/man/differential_evolution.Rd | 21 niarules-0.2.0/niarules/man/evaluate.Rd | 18 niarules-0.2.0/niarules/man/extract_feature_info.Rd | 8 niarules-0.2.0/niarules/man/fix_borders.Rd |only niarules-0.2.0/niarules/man/format_rule_parts.Rd |only niarules-0.2.0/niarules/man/map_to_ts.Rd |only niarules-0.2.0/niarules/man/print_association_rules.Rd | 9 niarules-0.2.0/niarules/man/print_feature_info.Rd | 2 niarules-0.2.0/niarules/man/problem_dimension.Rd | 14 niarules-0.2.0/niarules/man/read_dataset.Rd | 18 niarules-0.2.0/niarules/man/write_association_rules_to_csv.Rd | 18 niarules-0.2.0/niarules/tests/testthat/datasets/ts.csv |only niarules-0.2.0/niarules/tests/testthat/datasets/ts2.csv |only niarules-0.2.0/niarules/tests/testthat/test-build-rule-ts.R |only niarules-0.2.0/niarules/tests/testthat/test-build-rule.R | 14 niarules-0.2.0/niarules/tests/testthat/test-dataset.R | 11 34 files changed, 595 insertions(+), 355 deletions(-)
Title: Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann [aut, cre] ,
Jochen Fruend [aut] ,
Bernd Gruber [aut] ,
Tobias Bauer [ctb] ,
Stephen Beckett [ctb] ,
Mariano Devoto [ctb] ,
Gabriel M.F. Felix [ctb] ,
Jose M. Iriondo [ctb] ,
Tore Opsahl [ctb] ,
Rafael B.P. Pinheiro [ctb] ,
Rouven [...truncated...]
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>
Diff between bipartite versions 2.20 dated 2024-05-17 and 2.21 dated 2025-02-20
DESCRIPTION | 19 +++-- MD5 | 40 +++++------ NAMESPACE | 2 R/as.one.mode.r | 16 +++- R/frame2webs.R | 92 ++++++++++++++++++++++---- R/networklevel.R | 17 +++- R/sortweb.r | 2 R/spectral_radius.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/Intro2bipartite.R | 50 +++++++------- inst/doc/Intro2bipartite.Rnw | 74 ++++++++++---------- inst/doc/Intro2bipartite.pdf |binary man/as.one.mode.Rd | 11 ++- man/betalinkr.Rd | 4 - man/bipartite-package.Rd | 15 +++- man/networklevel.Rd | 7 + man/restrictednull.Rd | 6 - man/spectral.radius.Rd |only src/graph.h | 4 - vignettes/Intro2bipartite.Rnw | 74 ++++++++++---------- vignettes/figures/twocolumn-betweenPlot-1.pdf |binary 22 files changed, 274 insertions(+), 159 deletions(-)
Title: Relationship Between Species and Groups of Sites
Description: Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites [De Caceres & Legendre (2009) <doi:10.1890/08-1823.1>]. Also includes functions to measure species niche breadth using resource categories [De Caceres et al. (2011) <doi:10.1111/J.1600-0706.2011.19679.x>].
Author: Miquel De Caceres [aut, cre] ,
Florian Jansen [aut],
Sarah Endicott [aut],
Noah Dell [aut]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between indicspecies versions 1.7.15 dated 2024-08-21 and 1.8.0 dated 2025-02-20
DESCRIPTION | 10 MD5 | 24 NEWS.md | 3 R/multipatt.R | 82 +- R/summary.multipatt.R | 8 build/vignette.rds |binary inst/doc/IndicatorSpeciesAnalysis.R | 8 inst/doc/IndicatorSpeciesAnalysis.Rmd | 17 inst/doc/IndicatorSpeciesAnalysis.html | 1075 +++++++++++++++++---------------- inst/doc/PigeonExample.html | 24 man/multipatt.Rd | 3 man/summary.multipatt.Rd | 2 vignettes/IndicatorSpeciesAnalysis.Rmd | 17 13 files changed, 697 insertions(+), 576 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-24 1.0.0
2023-08-07 0.3.0
2023-03-21 0.2.1
2023-03-15 0.1.8
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Ali Azizishi [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.2.0 dated 2025-01-14 and 2.3.0 dated 2025-02-20
DESCRIPTION | 6 MD5 | 394 ++++++++++----------- NEWS.md | 8 R/augment.R | 2 R/autoplot.R | 2 R/bcanz.R | 2 R/boot.R | 2 R/burrlioz.R | 2 R/burrrIII3.R | 2 R/censor.R | 6 R/censored.R | 2 R/chk.R | 2 R/cis.R | 2 R/coef.R | 2 R/convergence.R | 2 R/d.R | 2 R/data.R | 14 R/devtools-helpers.R | 2 R/dist.R | 2 R/dists.R | 20 - R/estimates.R | 2 R/exposure.R | 12 R/fit-burrlioz.R | 2 R/fit.R | 7 R/gamma.R | 2 R/getters.R | 2 R/ggplot.R | 4 R/ggproto.R | 2 R/glance.R | 2 R/gof.R | 2 R/gompertz.R | 14 R/hc-burrlioz.R | 2 R/hc.R | 8 R/hcp.R | 2 R/helpers.R | 2 R/hp.R | 7 R/internal.R | 2 R/invpareto.R | 2 R/is.R | 2 R/lgumbel.R | 12 R/licensing.R | 4 R/llogis-llogis.R | 2 R/llogis.R | 2 R/lnorm-lnorm.R | 2 R/lnorm.R | 2 R/logLik.R | 2 R/match-moments.R | 2 R/min-pmix.R | 2 R/multi.R | 38 -- R/nobs.R | 2 R/npars.R | 2 R/params.R | 7 R/pars.R | 2 R/plot-cdf.R | 2 R/plot-cf.R | 2 R/plot-data.R | 2 R/plot.R | 2 R/pqr.R | 2 R/predict.R | 2 R/print.R | 2 R/scales.R | 8 R/seeds.R | 2 R/ssd-data.R | 2 R/ssd-plot.R | 82 ++-- R/ssdtools-package.R | 2 R/subset.R | 2 R/summary.R | 2 R/test-helpers.R | 4 R/tidy.R | 2 R/tmb.R | 2 R/utils.R | 4 R/weibull.R | 2 R/wqg.R | 4 README.md | 24 + data/dist_data.rda |binary inst/CITATION |only inst/doc/faqs.Rmd | 25 + inst/doc/faqs.html | 41 ++ inst/doc/ssdtools.html | 12 man/boron_pred.Rd | 6 man/dist_data.Rd | 8 man/params.Rd | 2 man/ssd_dists.Rd | 4 man/ssd_dists_all.Rd | 5 man/ssd_exposure.Rd | 10 man/ssd_p.Rd | 9 man/ssd_q.Rd | 9 man/ssd_r.Rd | 9 tests/testthat.R | 2 tests/testthat/_snaps/burrIII3/hc_chloride.csv | 2 tests/testthat/_snaps/burrIII3/hc_uranium.csv | 2 tests/testthat/_snaps/data/dist_data.csv | 22 - tests/testthat/_snaps/estimates.md | 9 tests/testthat/_snaps/fit/tidy_unstable_anon_e.csv | 2 tests/testthat/_snaps/hc-root.md | 18 tests/testthat/_snaps/hc/hc114.csv | 2 tests/testthat/_snaps/hc/hc122.csv | 2 tests/testthat/_snaps/hc/hc130.csv | 2 tests/testthat/_snaps/hc/hc138.csv | 4 tests/testthat/_snaps/hc/hc153.csv | 198 +++++----- tests/testthat/_snaps/hc/hc505.csv | 2 tests/testthat/_snaps/hc/hc_1.csv | 2 tests/testthat/_snaps/hc/hc_30.csv | 2 tests/testthat/_snaps/hc/hc_boot1_replace.csv | 28 - tests/testthat/_snaps/hc/hc_boot2_replace.csv | 28 - tests/testthat/_snaps/hc/hc_cis.csv | 2 tests/testthat/_snaps/hc/hc_cis_level08.csv | 2 tests/testthat/_snaps/hc/hc_save_to.csv | 2 tests/testthat/_snaps/hc/hc_save_to1.csv | 2 tests/testthat/_snaps/hc/hc_save_to11.csv | 2 tests/testthat/_snaps/hc/hc_save_to1_not_multi.csv | 2 tests/testthat/_snaps/hc/hc_save_to1_rescale.csv | 2 tests/testthat/_snaps/hc/hc_save_to1data.csv | 2 tests/testthat/_snaps/hc/hc_save_to_not_multi.csv | 2 tests/testthat/_snaps/hc/hc_save_to_rescale.csv | 2 tests/testthat/_snaps/hc/hcici.csv | 2 tests/testthat/_snaps/hc/hcici_multi.csv | 2 tests/testthat/_snaps/hp-root.md | 18 tests/testthat/_snaps/hp/hp41.csv | 2 tests/testthat/_snaps/hp/hp49.csv | 2 tests/testthat/_snaps/hp/hp57.csv | 2 tests/testthat/_snaps/hp/hp65.csv | 2 tests/testthat/_snaps/hp/hp73.csv | 2 tests/testthat/_snaps/hp/hp81.csv | 2 tests/testthat/_snaps/hp/hp89.csv | 4 tests/testthat/_snaps/hp/hp98.csv | 2 tests/testthat/_snaps/hp/hp_1.csv | 2 tests/testthat/_snaps/hp/hp_30.csv | 2 tests/testthat/_snaps/invpareto/hc_boron.csv | 13 tests/testthat/_snaps/invpareto/hp_boron.csv |only tests/testthat/_snaps/match-moments.md | 8 tests/testthat/_snaps/match-moments/cdf.png |binary tests/testthat/_snaps/multi.md | 9 tests/testthat/_snaps/plot-cdf/fits_delta.png |binary tests/testthat/_snaps/weibull/hc_anona.csv | 2 tests/testthat/_snaps/weighted/hc1.csv | 2 tests/testthat/_snaps/weighted/hc1w.csv | 2 tests/testthat/_snaps/weighted/hc2.csv | 2 tests/testthat/_snaps/weighted/hcall.csv | 2 tests/testthat/_snaps/weighted/hcallw10.csv | 2 tests/testthat/_snaps/weighted/hcallw100.csv | 2 tests/testthat/_snaps/weighted/hcallw1000.csv | 2 tests/testthat/test-augment.R | 2 tests/testthat/test-autoplot.R | 2 tests/testthat/test-bcanz.R | 2 tests/testthat/test-burrIII3.R | 2 tests/testthat/test-censor.R | 2 tests/testthat/test-censored.R | 2 tests/testthat/test-coef.R | 2 tests/testthat/test-data.R | 2 tests/testthat/test-dists.R | 6 tests/testthat/test-estimates.R | 2 tests/testthat/test-exposure.R | 8 tests/testthat/test-fit-burrlioz.R | 2 tests/testthat/test-fit.R | 7 tests/testthat/test-gamma.R | 2 tests/testthat/test-ggplot.R | 2 tests/testthat/test-glance.R | 2 tests/testthat/test-gof.R | 2 tests/testthat/test-gompertz-deprecated.R | 2 tests/testthat/test-gompertz.R | 2 tests/testthat/test-hc-burrlioz.R | 2 tests/testthat/test-hc-root.R | 2 tests/testthat/test-hc.R | 59 +-- tests/testthat/test-hcp-root.R | 2 tests/testthat/test-hp-burrlioz.R | 2 tests/testthat/test-hp-root.R | 2 tests/testthat/test-hp.R | 2 tests/testthat/test-invpareto.R | 10 tests/testthat/test-is.R | 2 tests/testthat/test-lgumbel-deprecated.R | 2 tests/testthat/test-lgumbel.R | 2 tests/testthat/test-licensing.R | 2 tests/testthat/test-llogis-llogis.R | 2 tests/testthat/test-llogis.R | 2 tests/testthat/test-lnorm-lnorm.R | 2 tests/testthat/test-lnorm.R | 2 tests/testthat/test-logLik.R | 2 tests/testthat/test-match-moments.R | 2 tests/testthat/test-multi.R | 31 - tests/testthat/test-nobs.R | 2 tests/testthat/test-npars.R | 6 tests/testthat/test-plot-cdf.R | 2 tests/testthat/test-plot-cf.R | 2 tests/testthat/test-plot-data.R | 2 tests/testthat/test-plot.R | 2 tests/testthat/test-predict.R | 2 tests/testthat/test-print.R | 2 tests/testthat/test-schwarz-tillmans.R | 2 tests/testthat/test-ssd-data.R | 2 tests/testthat/test-ssd-min-pmix.R | 2 tests/testthat/test-ssd-plot.R | 2 tests/testthat/test-subset.R | 2 tests/testthat/test-summary.R | 2 tests/testthat/test-tidy.R | 2 tests/testthat/test-utils.R | 2 tests/testthat/test-weibull.R | 4 tests/testthat/test-weighted.R | 2 vignettes/faqs.Rmd | 25 + 199 files changed, 839 insertions(+), 781 deletions(-)
Title: Easily Import Data from Your 'ODK-X Sync Endpoint'
Description: Provides helper functions for authenticating and retrieving data from your 'ODK-X Sync Endpoint'. This is an early release intended for testing and feedback.
Author: Emil Rossing [aut, cre]
Maintainer: Emil Rossing <hello@sapiens-solutions.com>
Diff between rockx versions 0.0.2 dated 2025-02-12 and 0.1.0 dated 2025-02-20
DESCRIPTION | 10 - MD5 | 21 +- NAMESPACE | 1 NEWS.md |only R/api_functions.R | 296 +++++++++++++++++------------------ R/authentication.R | 3 README.md |only inst/doc/rockx.Rmd | 37 +++- inst/doc/rockx.html | 46 +++-- man/get_table_metadata.Rd | 11 - man/has_access.Rd |only tests/testthat/test-authentication.R | 16 + vignettes/rockx.Rmd | 37 +++- 13 files changed, 277 insertions(+), 201 deletions(-)
Title: Joint Estimation of Latent Groups and Group-Specific
Coefficients in Panel Data Models
Description: Latent group structures are a common challenge in panel data analysis. Disregarding group-level heterogeneity can introduce bias. Conversely, estimating individual coefficients for each cross-sectional unit is inefficient and may lead to high uncertainty.
This package addresses the issue of unobservable group structures by implementing the pairwise adaptive group fused Lasso (PAGFL) by Mehrabani (2023) <doi:10.1016/j.jeconom.2022.12.002>. PAGFL identifies latent group structures and group-specific coefficients in a single step.
On top of that, we extend the PAGFL to time-varying coefficient functions.
Author: Paul Haimerl [aut, cre] ,
Stephan Smeekes [ctb] ,
Ines Wilms [ctb] ,
Ali Mehrabani [ctb]
Maintainer: Paul Haimerl <paul.haimerl@econ.au.dk>
Diff between PAGFL versions 1.1.2 dated 2024-11-09 and 1.1.3 dated 2025-02-20
DESCRIPTION | 8 MD5 | 50 - NEWS.md | 15 R/Checks.R | 160 ++--- R/Sim.R | 463 ++++++++-------- R/grouped_plm.R | 10 R/grouped_tv_plm.R | 2 R/pagfl.R | 13 R/s3_methods.R | 14 R/s3_methods_grouped_plm.R | 6 R/s3_methods_grouped_tv_plm.R | 6 R/s3_methods_tv.R | 26 R/sim_tv.R | 414 +++++++------- README.md | 895 ++++++++++++++++--------------- man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/grouped_plm.Rd | 1 man/grouped_tv_plm.Rd | 2 man/pagfl.Rd | 4 man/sim_DGP.Rd | 1 man/sim_tv_DGP.Rd | 14 src/PAGFL-package.cpp | 117 ++-- src/RcppExports.cpp | 1 tests/testthat/_snaps/methods.md | 20 tests/testthat/test-sim.R | 207 +++---- 26 files changed, 1264 insertions(+), 1185 deletions(-)
Title: Graphical User Interface with Integrated 'Diagrammer' for
'Lavaan'
Description: Provides a graphical user interface with an
integrated diagrammer for latent variables from the 'lavaan' package.
It offers two core functions: first, lavaangui() launches a web application
that allows users to specify models by drawing path diagrams, fitting them,
assessing model fit, and more; second, plot_lavaan() creates
interactive path diagrams from models specified in 'lavaan'.
Karch (2024) <doi: 10.31234/osf.io/f4ary> contains a tutorial.
Author: Julian D. Karch [aut, cre, cph]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between lavaangui versions 0.2.3 dated 2025-01-30 and 0.2.4 dated 2025-02-20
lavaangui-0.2.3/lavaangui/inst/www/assets/index-cd429c6f.js |only lavaangui-0.2.4/lavaangui/DESCRIPTION | 8 ++++---- lavaangui-0.2.4/lavaangui/MD5 | 9 +++++---- lavaangui-0.2.4/lavaangui/NEWS.md | 6 ++++++ lavaangui-0.2.4/lavaangui/inst/CITATION |only lavaangui-0.2.4/lavaangui/inst/www/assets/index-45781b04.js |only lavaangui-0.2.4/lavaangui/inst/www/index.html | 2 +- 7 files changed, 16 insertions(+), 9 deletions(-)
Title: Simulate Non-Proportional Hazards
Description: A toolkit for simulation studies concerning time-to-event endpoints
with non-proportional hazards. 'SimNPH' encompasses functions for simulating
time-to-event data in various scenarios, simulating different trial designs
like fixed-followup, event-driven, and group sequential designs. The package
provides functions to calculate the true values of common summary statistics
for the implemented scenarios and offers common analysis methods for
time-to-event data. Helper functions for running simulations with the
'SimDesign' package and for aggregating and presenting the results are also
included. Results of the conducted simulation study are available in the
paper: "A Comparison of Statistical Methods for Time-To-Event Analyses in
Randomized Controlled Trials Under Non-Proportional Hazards",
Klinglmüller et al. (2025) <doi:10.1002/sim.70019>.
Author: Tobias Fellinger [aut, cre] ,
Florian Klinglmueller [aut]
Maintainer: Tobias Fellinger <tobias.fellinger@ages.at>
Diff between SimNPH versions 0.5.5 dated 2024-03-04 and 0.5.6 dated 2025-02-20
SimNPH-0.5.5/SimNPH/inst/doc/simple_example.html.asis |only SimNPH-0.5.5/SimNPH/vignettes/poster_SAfJR2023.pdf |only SimNPH-0.5.5/SimNPH/vignettes/simple_example.html.asis |only SimNPH-0.5.5/SimNPH/vignettes/vignettes_prebuild |only SimNPH-0.5.6/SimNPH/DESCRIPTION | 20 SimNPH-0.5.6/SimNPH/MD5 | 54 SimNPH-0.5.6/SimNPH/NEWS.md | 8 SimNPH-0.5.6/SimNPH/R/SimNPH-package.R | 10 SimNPH-0.5.6/SimNPH/R/analyse_ahr.R | 2 SimNPH-0.5.6/SimNPH/R/report_plots.R | 8 SimNPH-0.5.6/SimNPH/README.md | 50 SimNPH-0.5.6/SimNPH/build/vignette.rds |binary SimNPH-0.5.6/SimNPH/inst/doc/simple_example.Rmd |only SimNPH-0.5.6/SimNPH/inst/doc/simple_example.html | 1097 ++++------ SimNPH-0.5.6/SimNPH/man/SimNPH.Rd | 43 SimNPH-0.5.6/SimNPH/man/analyse_ahr.Rd | 2 SimNPH-0.5.6/SimNPH/man/results_pivot_longer.Rd | 5 SimNPH-0.5.6/SimNPH/tests/testthat/test-analyse_ahr.R | 6 SimNPH-0.5.6/SimNPH/tests/testthat/test-analyse_coxph.R | 10 SimNPH-0.5.6/SimNPH/tests/testthat/test-analyse_describe.R | 77 SimNPH-0.5.6/SimNPH/tests/testthat/test-censoring_adminstrative.R | 16 SimNPH-0.5.6/SimNPH/tests/testthat/test-censoring_random.R | 7 SimNPH-0.5.6/SimNPH/tests/testthat/test-generate_crossing_hazards.R | 38 SimNPH-0.5.6/SimNPH/tests/testthat/test-generate_delayed_effect.R | 15 SimNPH-0.5.6/SimNPH/tests/testthat/test-merge_additional_sims.R | 66 SimNPH-0.5.6/SimNPH/tests/testthat/test-report_plots.R | 95 SimNPH-0.5.6/SimNPH/tests/testthat/test-shhr_gg.R | 36 SimNPH-0.5.6/SimNPH/tests/testthat/test-summarise.R | 3 SimNPH-0.5.6/SimNPH/vignettes/build_vignettes.R |only SimNPH-0.5.6/SimNPH/vignettes/simple_example.Rmd |only SimNPH-0.5.6/SimNPH/vignettes/simple_example.Rmd.orig |only 31 files changed, 1010 insertions(+), 658 deletions(-)
Title: Articulatory Data Processing in R
Description: A tool for processing Articulate
Assistant Advanced™ (AAA) ultrasound tongue imaging data and Carstens AG500/1 electro-magnetic articulographic data.
Author: Stefano Coretta [aut, cre]
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Diff between rticulate versions 2.0.0 dated 2025-02-08 and 2.0.1 dated 2025-02-20
DESCRIPTION | 16 +- MD5 | 34 ++-- NEWS.md | 10 + R/read.R | 17 +- build/vignette.rds |binary inst/doc/kinematics.html | 2 inst/doc/overview.Rmd | 4 inst/doc/overview.html | 12 + inst/doc/polar-gams.html | 52 +++--- inst/doc/tongue-imaging.R | 85 +++++++---- inst/doc/tongue-imaging.Rmd | 167 ++++++++++++++-------- inst/doc/tongue-imaging.html | 314 ++++++++++++++++++++++++++---------------- inst/doc/transform-coord.html | 6 man/read_aaa.Rd | 5 man/read_aaa_data.Rd | 5 man/rticulate-package.Rd | 5 vignettes/overview.Rmd | 4 vignettes/tongue-imaging.Rmd | 167 ++++++++++++++-------- 18 files changed, 574 insertions(+), 331 deletions(-)
Title: GWR, Mixed GWR and Multiscale GWR with Spatial Autocorrelation
Description: Functions for computing (Mixed and Multiscale) Geographically Weighted Regression with spatial autocorrelation, Geniaux and Martinetti (2017) <doi:10.1016/j.regsciurbeco.2017.04.001>.
Author: Ghislain Geniaux [aut, cre],
Davide Martinetti [aut],
Cesar Martinez [aut]
Maintainer: Ghislain Geniaux <ghislain.geniaux@inrae.fr>
Diff between mgwrsar versions 1.0.5 dated 2023-11-30 and 1.1 dated 2025-02-20
mgwrsar-1.0.5/mgwrsar/R/bandwidths_MGWRSAR.R |only mgwrsar-1.0.5/mgwrsar/R/cv.multiscale_gwr.R |only mgwrsar-1.0.5/mgwrsar/R/cv_h.R |only mgwrsar-1.0.5/mgwrsar/R/fb.R |only mgwrsar-1.0.5/mgwrsar/R/golden_search_bandwidth.R |only mgwrsar-1.0.5/mgwrsar/R/me_gwrsar.R |only mgwrsar-1.0.5/mgwrsar/R/plot.mgwrsar.R |only mgwrsar-1.0.5/mgwrsar/R/predict.mgwrsar.R |only mgwrsar-1.0.5/mgwrsar/R/simu_multiscale.R |only mgwrsar-1.0.5/mgwrsar/R/table_mgwrsar.R |only mgwrsar-1.0.5/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.R |only mgwrsar-1.0.5/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.Rmd |only mgwrsar-1.0.5/mgwrsar/inst/doc/Speeding_up_GWR_like_models_with_mgwrsar_package.html |only mgwrsar-1.0.5/mgwrsar/inst/doc/mgwrsar-basic_examples.R |only mgwrsar-1.0.5/mgwrsar/inst/doc/mgwrsar-basic_examples.Rmd |only mgwrsar-1.0.5/mgwrsar/inst/doc/mgwrsar-basic_examples.html |only mgwrsar-1.0.5/mgwrsar/man/bandwidths_mgwrsar.Rd |only mgwrsar-1.0.5/mgwrsar/man/figures |only mgwrsar-1.0.5/mgwrsar/man/multiscale_gwr.cv.Rd |only mgwrsar-1.0.5/mgwrsar/man/plot_mgwrsar.Rd |only mgwrsar-1.0.5/mgwrsar/man/predict_mgwrsar.Rd |only mgwrsar-1.0.5/mgwrsar/man/summary_mgwrsar.Rd |only mgwrsar-1.0.5/mgwrsar/vignettes/Speeding_up_GWR_like_models_with_mgwrsar_package.Rmd |only mgwrsar-1.0.5/mgwrsar/vignettes/TP48_8.jpeg |only mgwrsar-1.0.5/mgwrsar/vignettes/mgwrsar-basic_examples.Rmd |only mgwrsar-1.1/mgwrsar/DESCRIPTION | 37 + mgwrsar-1.1/mgwrsar/MD5 | 177 ++++---- mgwrsar-1.1/mgwrsar/NAMESPACE | 37 + mgwrsar-1.1/mgwrsar/NEWS.md | 16 mgwrsar-1.1/mgwrsar/R/AICc.R | 25 - mgwrsar-1.1/mgwrsar/R/BP_pred_MGWRSAR.R | 3 mgwrsar-1.1/mgwrsar/R/BP_pred_SAR.R | 4 mgwrsar-1.1/mgwrsar/R/GWR.R | 46 +- mgwrsar-1.1/mgwrsar/R/MGWR.R | 20 mgwrsar-1.1/mgwrsar/R/MGWRSAR.R | 208 +++++---- mgwrsar-1.1/mgwrsar/R/SSR.R | 10 mgwrsar-1.1/mgwrsar/R/Sidak_cor_MGWR.R | 30 - mgwrsar-1.1/mgwrsar/R/Tf.R | 31 - mgwrsar-1.1/mgwrsar/R/aic_model.R | 4 mgwrsar-1.1/mgwrsar/R/aicc_f.R |only mgwrsar-1.1/mgwrsar/R/assign_control.R | 2 mgwrsar-1.1/mgwrsar/R/atds_gwr.R |only mgwrsar-1.1/mgwrsar/R/bisq_adapt_sorted.R | 2 mgwrsar-1.1/mgwrsar/R/built_Vseq.R |only mgwrsar-1.1/mgwrsar/R/clean_colnames.R |only mgwrsar-1.1/mgwrsar/R/data.R | 13 mgwrsar-1.1/mgwrsar/R/dh_AICc.R |only mgwrsar-1.1/mgwrsar/R/dvcov.R |only mgwrsar-1.1/mgwrsar/R/edk.R |only mgwrsar-1.1/mgwrsar/R/edk_adapt_sorted.R |only mgwrsar-1.1/mgwrsar/R/fill_DGPTAB.R | 7 mgwrsar-1.1/mgwrsar/R/find_TP.R | 57 +- mgwrsar-1.1/mgwrsar/R/format_and_diagno.R |only mgwrsar-1.1/mgwrsar/R/golden_search_bandwidth_AICc.R | 62 +- mgwrsar-1.1/mgwrsar/R/gwr_beta.R | 148 ++++-- mgwrsar-1.1/mgwrsar/R/gwr_beta_glm.R | 65 ++- mgwrsar-1.1/mgwrsar/R/gwr_beta_glmboost.R | 28 - mgwrsar-1.1/mgwrsar/R/init_RMSE_history.R |only mgwrsar-1.1/mgwrsar/R/init_param_tds.R |only mgwrsar-1.1/mgwrsar/R/kdist.R |only mgwrsar-1.1/mgwrsar/R/kdist_adapt_sorted.R |only mgwrsar-1.1/mgwrsar/R/kernel_matW.R | 60 +- mgwrsar-1.1/mgwrsar/R/methods.R |only mgwrsar-1.1/mgwrsar/R/mgwr_stage1.R | 5 mgwrsar-1.1/mgwrsar/R/mgwrsar_bootstrap_test.R | 42 + mgwrsar-1.1/mgwrsar/R/mgwrsar_bootstrap_test_all.R | 20 mgwrsar-1.1/mgwrsar/R/modc.R |only mgwrsar-1.1/mgwrsar/R/multiscale_gwr.R | 216 +++++----- mgwrsar-1.1/mgwrsar/R/pastlm.R |only mgwrsar-1.1/mgwrsar/R/plot_effect.R | 72 +-- mgwrsar-1.1/mgwrsar/R/plot_mgwrsar.R |only mgwrsar-1.1/mgwrsar/R/predict_mgwrsar.R |only mgwrsar-1.1/mgwrsar/R/prep_d.R | 33 + mgwrsar-1.1/mgwrsar/R/prep_var.R | 54 +- mgwrsar-1.1/mgwrsar/R/prep_w.R | 168 ++----- mgwrsar-1.1/mgwrsar/R/reassign_control.R |only mgwrsar-1.1/mgwrsar/R/rmse.R |only mgwrsar-1.1/mgwrsar/R/sheppard.R | 8 mgwrsar-1.1/mgwrsar/R/simu.R |only mgwrsar-1.1/mgwrsar/R/stage1_tds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/stage1_tds_mgwr_H.R |only mgwrsar-1.1/mgwrsar/R/stage2_atds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/starting_model_atds_gwr.R |only mgwrsar-1.1/mgwrsar/R/starting_model_tds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/summary_mgwrsar.R | 7 mgwrsar-1.1/mgwrsar/R/tds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/tp.R | 24 - mgwrsar-1.1/mgwrsar/R/triangle_adapt_sorted.R | 2 mgwrsar-1.1/mgwrsar/R/zzz.R | 11 mgwrsar-1.1/mgwrsar/build/partial.rdb |only mgwrsar-1.1/mgwrsar/build/vignette.rds |binary mgwrsar-1.1/mgwrsar/data/mydata.RData |binary mgwrsar-1.1/mgwrsar/data/mydatasf.RData |only mgwrsar-1.1/mgwrsar/inst/CITATION | 1 mgwrsar-1.1/mgwrsar/inst/doc/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html |only mgwrsar-1.1/mgwrsar/inst/doc/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/GWR-with-Space-Time-Kernels.html |only mgwrsar-1.1/mgwrsar/inst/doc/GWR-with-Space-Time-Kernels.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Intro_french_data.html |only mgwrsar-1.1/mgwrsar/inst/doc/Intro_french_data.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Multiscale-GWR-using-top-down-scale-approach.html |only mgwrsar-1.1/mgwrsar/inst/doc/Multiscale-GWR-using-top-down-scale-approach.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Speeding_up_GWR_like_models.html |only mgwrsar-1.1/mgwrsar/inst/doc/Speeding_up_GWR_like_models.html.asis |only mgwrsar-1.1/mgwrsar/man/MGWRSAR.Rd | 53 +- mgwrsar-1.1/mgwrsar/man/atds_gwr.Rd |only mgwrsar-1.1/mgwrsar/man/coef.mgwrsar.Rd |only mgwrsar-1.1/mgwrsar/man/find_TP.Rd | 48 +- mgwrsar-1.1/mgwrsar/man/fitted.mgwrsar.Rd |only mgwrsar-1.1/mgwrsar/man/golden_search_bandwidth.Rd |only mgwrsar-1.1/mgwrsar/man/kernel_matW.Rd | 26 - 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Title: A Parametric Model for Estimating the Mean Number of Events
Description: Implementation of a parametric joint model for modelling recurrent
and competing event processes using generalised survival models as described in
Entrop et al., (2005) <doi:10.1002/bimj.70038>. The joint model can
subsequently be used to predict the mean number of events in the
presence of competing risks at different time points. Comparisons of the mean
number of event functions, e.g. the differences in mean number of events
between two exposure groups, are also available.
Author: Joshua P. Entrop [aut, cre, cph]
,
Alessandro Gasparini [ctb],
Mark Clements [ctb]
Maintainer: Joshua P. Entrop <joshuaentrop@posteo.de>
Diff between JointFPM versions 1.2.1 dated 2024-06-19 and 1.2.2 dated 2025-02-20
DESCRIPTION | 17 +++++++------ MD5 | 8 ++++-- NEWS.md | 59 ++++++++++++++++++++++++++---------------------- build |only inst |only man/JointFPM-package.Rd | 2 - 6 files changed, 48 insertions(+), 38 deletions(-)
Title: Stratigraphic Paleobiology Modeling Pipelines
Description: The fossil record is a joint expression of ecological, taphonomic,
evolutionary, and stratigraphic processes (Holland and Patzkowsky, 2012, ISBN:978-0226649382).
This package allowing to simulate biological processes in the time domain
(e.g., trait evolution, fossil abundance), and examine how their expression
in the rock record (stratigraphic domain) is influenced based on
age-depth models, ecological niche models, and taphonomic effects.
Functions simulating common processes used in modeling trait evolution or
event type data such as first/last occurrences are provided and can be used
standalone or as part of a pipeline. The package comes with example
data sets and tutorials in several vignettes, which can be used as a
template to set up one's own simulation.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between StratPal versions 0.3.0 dated 2024-11-21 and 0.3.1 dated 2025-02-20
DESCRIPTION | 6 MD5 | 44 +- NEWS.md | 72 +-- R/ornstein_uhlenbeck.R | 9 R/ornstein_uhlenbeck_sl.R | 5 README.md | 5 build/vignette.rds |binary inst/CITATION | 15 inst/WORDLIST | 4 inst/doc/StratPal.Rmd | 2 inst/doc/StratPal.html | 2 inst/doc/event_data.Rmd | 674 ++++++++++++++++++------------------ inst/doc/event_data.html | 7 inst/doc/paleoTS_functionality.Rmd | 18 inst/doc/paleoTS_functionality.html | 27 - inst/doc/phenotypic_evolution.Rmd | 6 inst/doc/phenotypic_evolution.html | 9 man/ornstein_uhlenbeck.Rd | 13 man/ornstein_uhlenbeck_sl.Rd | 6 vignettes/StratPal.Rmd | 2 vignettes/event_data.Rmd | 674 ++++++++++++++++++------------------ vignettes/paleoTS_functionality.Rmd | 18 vignettes/phenotypic_evolution.Rmd | 6 23 files changed, 847 insertions(+), 777 deletions(-)
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.9.0 dated 2025-01-10 and 1.0.0 dated 2025-02-20
DESCRIPTION | 13 MD5 | 49 +-- NAMESPACE | 11 NEWS.md | 10 R/KorAPConnection.R | 293 +++++++++++++++++----- R/KorAPCorpusStats.R | 4 R/KorAPQuery.R | 45 +-- R/collocationAnalysis.R | 8 R/collocationScoreQuery.R | 19 - demo/00Index | 4 demo/adjectiveCollocates.R | 23 - demo/displayKwics.R | 13 demo/pluralGenderVariants.R | 22 - man/KorAPConnection-class.Rd | 48 +-- man/KorAPQuery-class.Rd | 12 man/auth-KorAPConnection-method.Rd |only man/clearAccessToken-KorAPConnection-method.Rd |only man/collocationAnalysis-KorAPConnection-method.Rd | 7 man/mergeDuplicateCollocates.Rd | 12 man/persistAccessToken-KorAPConnection-method.Rd |only tests/testthat/test-KorAPConnection.R | 16 - tests/testthat/test-collocations.R | 64 ++++ tests/testthat/test-corpusQuery.R | 51 ++- tests/testthat/test-corpusStats.R | 8 tests/testthat/test-demos.R | 18 - tests/testthat/test-misc.R | 7 tests/testthat/test-textMetadata.R | 6 27 files changed, 493 insertions(+), 270 deletions(-)
Title: Static and Dynamic 3D and Editable Interactive Plots for the
'vegan' Package
Description: Static and dynamic 3D plots to be used with ordination
results and in diversity analysis, especially with the vegan package.
Author: Jari Oksanen [aut, cre],
Roeland Kindt [aut],
Gavin L. Simpson [aut],
Duncan Murdoch [ctb]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan3d versions 1.3-0 dated 2024-03-19 and 1.4-0 dated 2025-02-20
DESCRIPTION | 8 +++---- MD5 | 26 ++++++++++++++----------- NAMESPACE | 6 ++++- R/ordilattice3d.R |only R/ordiplot3d.R | 2 - R/ordirgl.R | 32 ++++++++++++++++--------------- R/panel.ordi3d.R |only R/prepanel.ordi3d.R |only build/partial.rdb |binary inst/NEWS.md | 24 +++++++++++++++++++++++ inst/README.md | 4 +-- man/ordilattice3d.Rd |only man/ordiplot3d.Rd | 30 +++++++++++++++++------------ man/ordirgl.Rd | 13 ++++++------ man/orditree3d.Rd | 2 - man/vegan3d-package.Rd | 50 +++++++++++++++++++++++++++++++++---------------- 16 files changed, 128 insertions(+), 69 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.1-5 dated 2024-11-07 and 3.2-0 dated 2025-02-20
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GGIR-3.2-0/GGIR/R/g.fragmentation.R | 77 - GGIR-3.2-0/GGIR/R/g.getM5L5.R | 62 - GGIR-3.2-0/GGIR/R/g.impute.R | 34 GGIR-3.2-0/GGIR/R/g.imputeTimegaps.R | 18 GGIR-3.2-0/GGIR/R/g.loadlog.R | 444 +++++--- GGIR-3.2-0/GGIR/R/g.part2.R | 54 GGIR-3.2-0/GGIR/R/g.part4.R | 63 - GGIR-3.2-0/GGIR/R/g.part5.R | 162 ++ GGIR-3.2-0/GGIR/R/g.part5.addfirstwake.R | 8 GGIR-3.2-0/GGIR/R/g.part5.analyseRest.R | 319 ++++- GGIR-3.2-0/GGIR/R/g.part5.definedays.R | 72 - GGIR-3.2-0/GGIR/R/g.part5.savetimeseries.R | 56 - GGIR-3.2-0/GGIR/R/g.part5.wakesleepwindows.R | 8 GGIR-3.2-0/GGIR/R/g.part5_analyseSegment.R | 208 +-- GGIR-3.2-0/GGIR/R/g.part5_initialise_ts.R | 5 GGIR-3.2-0/GGIR/R/g.part6.R | 376 +++++- GGIR-3.2-0/GGIR/R/g.plot5.R | 32 GGIR-3.2-0/GGIR/R/g.report.part2.R | 73 + GGIR-3.2-0/GGIR/R/g.report.part4.R | 85 + GGIR-3.2-0/GGIR/R/g.report.part5.R | 17 GGIR-3.2-0/GGIR/R/g.report.part6.R | 13 GGIR-3.2-0/GGIR/R/g.sib.det.R | 89 - GGIR-3.2-0/GGIR/R/g.sibreport.R | 94 + GGIR-3.2-0/GGIR/R/g.weardec.R | 26 GGIR-3.2-0/GGIR/R/iso8601chartime2POSIX.R | 2 GGIR-3.2-0/GGIR/R/load_params.R | 37 GGIR-3.2-0/GGIR/R/read.myacc.csv.R | 14 GGIR-3.2-0/GGIR/R/tidyup_df.R | 18 GGIR-3.2-0/GGIR/R/visualReport.R |only GGIR-3.2-0/GGIR/build/vignette.rds |binary GGIR-3.2-0/GGIR/inst/doc/CutPoints.Rmd | 4 GGIR-3.2-0/GGIR/inst/doc/CutPoints.html | 6 GGIR-3.2-0/GGIR/inst/doc/ExternalFunction.R | 164 +-- GGIR-3.2-0/GGIR/inst/doc/ExternalFunction.Rmd | 9 GGIR-3.2-0/GGIR/inst/doc/ExternalFunction.html | 17 GGIR-3.2-0/GGIR/inst/doc/GGIR.R | 82 - GGIR-3.2-0/GGIR/inst/doc/GGIR.Rmd | 99 - GGIR-3.2-0/GGIR/inst/doc/GGIR.html | 163 +- GGIR-3.2-0/GGIR/inst/doc/GGIRParameters.R | 3 GGIR-3.2-0/GGIR/inst/doc/GGIRParameters.Rmd | 18 GGIR-3.2-0/GGIR/inst/doc/GGIRParameters.html | 445 +++++--- GGIR-3.2-0/GGIR/inst/doc/GGIRoutput.R | 3 GGIR-3.2-0/GGIR/inst/doc/GGIRoutput.Rmd | 553 +++++----- GGIR-3.2-0/GGIR/inst/doc/GGIRoutput.html | 653 ++++++++---- GGIR-3.2-0/GGIR/inst/doc/TutorialDaySegmentAnalyses.R | 28 GGIR-3.2-0/GGIR/inst/doc/TutorialDaySegmentAnalyses.Rmd | 2 GGIR-3.2-0/GGIR/inst/doc/TutorialDaySegmentAnalyses.html | 4 GGIR-3.2-0/GGIR/inst/doc/readmyacccsv.R | 76 - GGIR-3.2-0/GGIR/inst/doc/readmyacccsv.Rmd | 23 GGIR-3.2-0/GGIR/inst/doc/readmyacccsv.html | 36 GGIR-3.2-0/GGIR/man/ABI.Rd |only GGIR-3.2-0/GGIR/man/DFA.Rd |only GGIR-3.2-0/GGIR/man/GGIR-package.Rd | 4 GGIR-3.2-0/GGIR/man/GGIR.Rd | 291 +++-- GGIR-3.2-0/GGIR/man/MXLX.Rd |only GGIR-3.2-0/GGIR/man/SSP.Rd |only GGIR-3.2-0/GGIR/man/aggregateEvent.Rd |only GGIR-3.2-0/GGIR/man/apply_cosinor_IS_IV_Analyses.Rd |only GGIR-3.2-0/GGIR/man/cosinor_IS_IV_Analyses.Rd |only GGIR-3.2-0/GGIR/man/create_test_sleeplog_csv.Rd | 8 GGIR-3.2-0/GGIR/man/filterNonwearNight.Rd |only GGIR-3.2-0/GGIR/man/g.IVIS.Rd | 26 GGIR-3.2-0/GGIR/man/g.analyse.avday.Rd | 20 GGIR-3.2-0/GGIR/man/g.getM5L5.Rd | 6 GGIR-3.2-0/GGIR/man/g.impute.Rd | 10 GGIR-3.2-0/GGIR/man/g.loadlog.Rd | 6 GGIR-3.2-0/GGIR/man/g.part5.analyseRest.Rd | 17 GGIR-3.2-0/GGIR/man/g.part5.savetimeseries.Rd | 31 GGIR-3.2-0/GGIR/man/g.part6.Rd | 5 GGIR-3.2-0/GGIR/man/g.report.part2.Rd | 8 GGIR-3.2-0/GGIR/man/g.report.part4.Rd | 11 GGIR-3.2-0/GGIR/man/g.weardec.Rd | 21 GGIR-3.2-0/GGIR/man/read.myacc.csv.Rd | 5 GGIR-3.2-0/GGIR/man/visualReport.Rd |only GGIR-3.2-0/GGIR/tests/testthat/test_MXLX.R |only GGIR-3.2-0/GGIR/tests/testthat/test_aggregateEvent.R |only GGIR-3.2-0/GGIR/tests/testthat/test_chainof5parts.R | 36 GGIR-3.2-0/GGIR/tests/testthat/test_cosinor.R | 10 GGIR-3.2-0/GGIR/tests/testthat/test_detectEventBouts.R |only GGIR-3.2-0/GGIR/tests/testthat/test_dfa.R |only GGIR-3.2-0/GGIR/tests/testthat/test_fragmentation.R | 65 - GGIR-3.2-0/GGIR/tests/testthat/test_g.IVIS.R | 22 GGIR-3.2-0/GGIR/tests/testthat/test_g.impute.R | 2 GGIR-3.2-0/GGIR/tests/testthat/test_gloadlog.R | 38 GGIR-3.2-0/GGIR/tests/testthat/test_gweardec.R | 32 GGIR-3.2-0/GGIR/tests/testthat/test_load_check_params.R | 32 GGIR-3.2-0/GGIR/tests/testthat/test_part5_analyseRest.R | 48 GGIR-3.2-0/GGIR/tests/testthat/test_part6.R | 115 +- GGIR-3.2-0/GGIR/tests/testthat/test_read.myacc.csv.R | 35 GGIR-3.2-0/GGIR/tests/testthat/test_recordingEndSleepHour.R | 8 GGIR-3.2-0/GGIR/tests/testthat/test_sibreport.R | 4 GGIR-3.2-0/GGIR/vignettes/CutPoints.Rmd | 4 GGIR-3.2-0/GGIR/vignettes/ExternalFunction.Rmd | 9 GGIR-3.2-0/GGIR/vignettes/GGIR.Rmd | 99 - GGIR-3.2-0/GGIR/vignettes/GGIRParameters.Rmd | 18 GGIR-3.2-0/GGIR/vignettes/GGIRoutput.Rmd | 553 +++++----- GGIR-3.2-0/GGIR/vignettes/TutorialDaySegmentAnalyses.Rmd | 2 GGIR-3.2-0/GGIR/vignettes/readmyacccsv.Rmd | 23 128 files changed, 4981 insertions(+), 2779 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sev-in.ru>
Diff between ursa versions 3.11.3 dated 2025-02-18 and 3.11.4 dated 2025-02-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 +++++- R/classRaster.Extract.R | 2 +- inst/requisite/browseURL.html | 10 +++++++--- 5 files changed, 20 insertions(+), 12 deletions(-)
Title: Multi-Reader Multi-Case Analysis of Binary Diagnostic Tests
Description: The goal of 'MRMCbinary' is to compare the performance of diagnostic tests (i.e., sensitivity and specificity) for binary outcomes in multi-reader multi-case (MRMC) studies. It is based on conditional logistic regression and Cochran’s Q test (or McNemar’s test when the number of modalities is equal to 2).
Author: Seungjae Lee [aut, cre] ,
Woojoo Lee [aut]
Maintainer: Seungjae Lee <seungjae2525@gmail.com>
Diff between MRMCbinary versions 1.0.4 dated 2025-01-31 and 1.0.5 dated 2025-02-20
MRMCbinary-1.0.4/MRMCbinary/R/format_f.R |only MRMCbinary-1.0.5/MRMCbinary/DESCRIPTION | 8 MRMCbinary-1.0.5/MRMCbinary/MD5 | 24 - MRMCbinary-1.0.5/MRMCbinary/NEWS.md |only MRMCbinary-1.0.5/MRMCbinary/R/MRMCbinary.R | 198 ++++------ MRMCbinary-1.0.5/MRMCbinary/R/analysis_MRMC.R |only MRMCbinary-1.0.5/MRMCbinary/R/make_MRMCdata.R | 88 ++++ MRMCbinary-1.0.5/MRMCbinary/R/print.MRMCbinary.R | 198 ---------- MRMCbinary-1.0.5/MRMCbinary/R/printf_MRMC.R |only MRMCbinary-1.0.5/MRMCbinary/R/result_mat.R | 67 +++ MRMCbinary-1.0.5/MRMCbinary/R/summary.MRMCbinary.R | 340 ------------------ MRMCbinary-1.0.5/MRMCbinary/R/summaryf_MRMC.R |only MRMCbinary-1.0.5/MRMCbinary/R/utils.R |only MRMCbinary-1.0.5/MRMCbinary/man/MRMCbinary.Rd | 24 - MRMCbinary-1.0.5/MRMCbinary/man/print.MRMCbinary.Rd | 18 MRMCbinary-1.0.5/MRMCbinary/man/summary.MRMCbinary.Rd | 18 16 files changed, 320 insertions(+), 663 deletions(-)
Title: Fast Library for Number Theory
Description: An R interface to 'FLINT' <https://flintlib.org/>, a C library for
number theory. 'FLINT' extends GNU 'MPFR' <https://www.mpfr.org/>
and GNU 'MP' <https://gmplib.org/> with support for arithmetic in
standard rings (the integers, the integers modulo n, the rational,
p-adic, real, and complex numbers) as well as vectors, matrices,
polynomials, and power series over rings. 'FLINT' implements
midpoint-radius interval arithmetic, also known as ball arithmetic,
in the real and complex numbers, enabling computation in arbitrary
precision with rigorous propagation of errors; see Johansson (2017)
<doi:10.1109/TC.2017.2690633>. Finally, 'FLINT' provides ball
arithmetic implementations of many special mathematical functions,
with high coverage of reference works such as the NIST Digital
Library of Mathematical Functions <https://dlmf.nist.gov/>. The R
interface defines S4 classes, generic functions, and methods for
representation and basic operations as well as p [...truncated...]
Author: Mikael Jagan [aut, cre]
Maintainer: Mikael Jagan <jaganmn@mcmaster.ca>
Diff between flint versions 0.0.1 dated 2025-02-17 and 0.0.2 dated 2025-02-20
DESCRIPTION | 41 ++++++++++++++++++++--------------------- MD5 | 51 ++++++++++++++++++++++++++------------------------- build/partial.rdb |binary configure | 34 +++++++++++++++++++++++----------- configure.ac | 18 +++++++++++++++--- inst/NEWS.Rd | 46 ++++++++++++++++++++++++++++++++++------------ src/acb.c | 1 + src/acb_special.c | 1 + src/acb_template.c | 1 + src/acb_template.h | 1 + src/acf.c | 1 + src/arb.c | 1 + src/arb_constant.c | 3 ++- src/arb_special.c | 1 + src/arb_template.c | 1 + src/arb_template.h | 1 + src/arf.c | 1 + src/flint.c | 29 +++++++++++++++-------------- src/flint.h | 2 +- src/fmpq.c | 1 + src/fmpz.c | 1 + src/init.c | 3 ++- src/mag.c | 1 + src/noreturn.h |only src/slong.c | 1 + src/ulong.c | 1 + src/version.c | 1 + 27 files changed, 154 insertions(+), 89 deletions(-)
Title: Preprocessing Tools for Clinical Trial Data
Description: A collection of functions to preprocess data and organize
them in a format amenable to use by chevron.
Author: Liming Li [aut] ,
Benoit Falquet [aut] ,
Xiaoli Duan [ctb],
Pawel Rucki [ctb],
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between dunlin versions 0.1.8 dated 2024-10-31 and 0.1.9 dated 2025-02-20
DESCRIPTION | 25 +++++++++++++++---------- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/WORDLIST | 1 + man/dunlin-package.Rd | 5 +++-- 5 files changed, 27 insertions(+), 16 deletions(-)
Title: Standard TLGs for Clinical Trials Reporting
Description: Provide standard tables, listings, and graphs (TLGs)
libraries used in clinical trials. This package implements a structure
to reformat the data with 'dunlin', create reporting tables using
'rtables' and 'tern' with standardized input arguments to enable quick
generation of standard outputs. In addition, it also provides
comprehensive data checks and script generation functionality.
Author: Liming Li [aut] ,
Benoit Falquet [aut] ,
Xiaoli Duan [aut],
Adrian Waddell [ctb],
Chenkai Lv [ctb],
Pawel Rucki [ctb],
Tim Barnett [ctb],
Tian Fang [ctb],
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between chevron versions 0.2.7 dated 2024-10-09 and 0.2.10 dated 2025-02-20
chevron-0.2.10/chevron/DESCRIPTION | 39 chevron-0.2.10/chevron/MD5 | 104 chevron-0.2.10/chevron/NAMESPACE | 6 chevron-0.2.10/chevron/NEWS.md | 17 chevron-0.2.10/chevron/R/cfbt01.R | 4 chevron-0.2.10/chevron/R/chevron_tlg-S4methods.R | 54 chevron-0.2.10/chevron/R/egt01.R | 4 chevron-0.2.10/chevron/R/lbt01.R | 78 chevron-0.2.10/chevron/R/lbt04.R | 2 chevron-0.2.10/chevron/R/lbt05.R | 3 chevron-0.2.10/chevron/R/mng01.R | 3 chevron-0.2.10/chevron/R/package.R | 2 chevron-0.2.10/chevron/R/reexports.R | 2 chevron-0.2.10/chevron/R/report_null.R | 20 chevron-0.2.10/chevron/R/ttet01.R | 3 chevron-0.2.10/chevron/R/unwrap.R |only chevron-0.2.10/chevron/R/vst01.R | 11 chevron-0.2.10/chevron/README.md | 2 chevron-0.2.10/chevron/inst/WORDLIST | 1 chevron-0.2.10/chevron/inst/doc/chevron.R | 18 chevron-0.2.10/chevron/inst/doc/chevron.html | 2 chevron-0.2.10/chevron/inst/doc/chevron_catalog.R | 37 chevron-0.2.10/chevron/inst/doc/chevron_catalog.html | 4502 +++++----- chevron-0.2.10/chevron/inst/doc/chevron_catalog.rmd | 33 chevron-0.2.10/chevron/man/afun_skip.Rd | 2 chevron-0.2.10/chevron/man/cfbt01.Rd | 2 chevron-0.2.10/chevron/man/cfbt01_lyt.Rd | 2 chevron-0.2.10/chevron/man/chevron-package.Rd | 5 chevron-0.2.10/chevron/man/egt01.Rd | 8 chevron-0.2.10/chevron/man/figures/logo.svg |only chevron-0.2.10/chevron/man/h_unwrap_layout.Rd |only chevron-0.2.10/chevron/man/lbt01.Rd | 14 chevron-0.2.10/chevron/man/reexports.Rd | 3 chevron-0.2.10/chevron/man/report_null.Rd | 9 chevron-0.2.10/chevron/man/run.Rd | 21 chevron-0.2.10/chevron/man/unwrap_layout.Rd |only chevron-0.2.10/chevron/man/vst01.Rd | 4 chevron-0.2.10/chevron/tests/testthat/_snaps/ael02.md | 216 chevron-0.2.10/chevron/tests/testthat/_snaps/ael03.md | 216 chevron-0.2.10/chevron/tests/testthat/_snaps/chevron_tlg-methods.md | 396 chevron-0.2.10/chevron/tests/testthat/_snaps/egt01.md | 864 - chevron-0.2.10/chevron/tests/testthat/_snaps/lbt01.md | 864 - chevron-0.2.10/chevron/tests/testthat/_snaps/lbt05.md | 36 chevron-0.2.10/chevron/tests/testthat/_snaps/lbt14.md | 140 chevron-0.2.10/chevron/tests/testthat/_snaps/mng01/mng01-with-custom-theme.new.svg |only chevron-0.2.10/chevron/tests/testthat/_snaps/unwrap.md |only chevron-0.2.10/chevron/tests/testthat/_snaps/vst01.md | 656 - chevron-0.2.10/chevron/tests/testthat/test-chevron_tlg-methods.R | 82 chevron-0.2.10/chevron/tests/testthat/test-egt01.R | 2 chevron-0.2.10/chevron/tests/testthat/test-lbt01.R | 8 chevron-0.2.10/chevron/tests/testthat/test-lbt05.R | 9 chevron-0.2.10/chevron/tests/testthat/test-report_null.R | 8 chevron-0.2.10/chevron/tests/testthat/test-ttet01.R | 12 chevron-0.2.10/chevron/tests/testthat/test-unwrap.R |only chevron-0.2.10/chevron/tests/testthat/test-vst01.R | 2 chevron-0.2.10/chevron/vignettes/chevron_catalog.rmd | 33 chevron-0.2.7/chevron/man/figures/chevron.png |only 57 files changed, 4808 insertions(+), 3753 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-19 0.14.1
2025-01-29 0.12.1
2024-10-07 0.10.1
2024-09-09 0.9.3
2024-04-28 0.9.1
2024-03-08 0.7.10
2024-02-17 0.7.9
Title: Suess and Laws Corrections for Marine Stable Carbon Isotope Data
Description: Generates region-specific Suess and Laws corrections for
stable carbon isotope data from marine organisms collected between 1850 and 2023. Version
0.1.6 of 'SuessR' contains four built-in regions: the Bering Sea ('Bering Sea'), the
Aleutian archipelago ('Aleutian Islands'), the Gulf of Alaska ('Gulf of Alaska'), and the
subpolar North Atlantic ('Subpolar North Atlantic'). Users can supply their own environmental
data for regions currently not built into the package to generate corrections for those regions.
Author: Casey Clark [cre, aut],
Mattias Cape [aut],
Mark Shapley [aut],
Franz Mueter [aut],
Bruce Finney [aut],
Nicole Misarti [aut]
Maintainer: Casey Clark <casey.t.clark@gmail.com>
Diff between SuessR versions 0.1.5 dated 2023-10-20 and 0.1.6 dated 2025-02-20
DESCRIPTION | 10 +++++----- LICENSE | 2 +- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/SuessR_Package.R | 22 +++++++++++----------- R/SuessR_Reference_Data.R | 6 +++--- data/SuessR_Reference_Data.RData |binary man/SuessR.Rd | 2 +- man/SuessR.custom.Rd | 20 ++++++++++---------- man/SuessR.reference.data.Rd | 6 +++--- 10 files changed, 48 insertions(+), 43 deletions(-)