Title: Boosting Methods for 'GAMLSS'
Description: Boosting models for fitting generalized additive models for
location, shape and scale ('GAMLSS') to potentially high dimensional
data.
Author: Benjamin Hofner [aut, cre] ,
Andreas Mayr [aut],
Nora Fenske [aut],
Janek Thomas [aut],
Matthias Schmid [aut]
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between gamboostLSS versions 2.0-7 dated 2023-03-09 and 2.1-0 dated 2025-02-24
ChangeLog | 73 +++++++++++++++++++++++++++ DESCRIPTION | 13 ++-- MD5 | 42 +++++++-------- NAMESPACE | 2 R/as.families.R | 18 ++++++ R/families.R | 100 ++++++++++++++++++++++++++++++++++++++ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/india.RData |binary data/india.bnd.RData |binary inst/NEWS.Rd | 19 ++++++- inst/doc/gamboostLSS_Tutorial.pdf |binary man/as.families.Rd | 6 +- man/cvrisk.Rd | 6 +- man/families.Rd | 31 +++++++++-- man/gamboostLSS-package.Rd | 6 +- man/india.Rd | 2 man/mboostLSS.Rd | 30 +++++------ man/methods.Rd | 2 man/stabsel.mboostLSS.Rd | 2 tests/regtest-families.R | 79 ++++++++++++++++++++++++++++++ 22 files changed, 366 insertions(+), 67 deletions(-)
Title: Brazilian Population Estimatives
Description: Functions to handle and aggregate population estimates for Brazilian municipalities by sex and age groups.
Author: Raphael Saldanha [aut, cre]
Maintainer: Raphael Saldanha <raphael.saldanha@fiocruz.br>
Diff between brpop versions 0.5.0 dated 2024-10-17 and 0.6.0 dated 2025-02-24
DESCRIPTION | 10 +-- MD5 | 84 +++++++++++++++--------------- NEWS.md | 5 + R/datasus2024_mun_female_pop.R |only R/datasus2024_mun_male_pop.R |only R/mun_female_pop_totals.R | 6 +- R/mun_male_pop_totals.R | 6 +- R/mun_pop_age.R | 7 +- R/mun_pop_totals.R | 9 ++- R/mun_sex_pop.R | 7 +- R/regsaude_female_pop.R | 6 +- R/regsaude_female_pop_totals.R | 4 - R/regsaude_male_pop.R | 6 +- R/regsaude_male_pop_totals.R | 4 - R/regsaude_pop_age.R | 4 - R/regsaude_pop_totals.R | 6 +- R/regsaude_sex_pop.R | 4 - R/uf_female_pop_totals.R | 6 +- R/uf_male_pop_totals.R | 6 +- R/uf_pop_age.R | 7 +- R/uf_pop_totals.R | 9 ++- R/uf_sex_pop.R | 7 +- R/zenodo_deposit.R | 2 man/brpop-package.Rd | 2 man/datasus2024_mun_female_pop.Rd |only man/datasus2024_mun_male_pop.Rd |only man/mun_female_pop_totals.Rd | 2 man/mun_male_pop_totals.Rd | 2 man/mun_pop_age.Rd | 2 man/mun_pop_totals.Rd | 2 man/mun_sex_pop.Rd | 2 man/regsaude_female_pop.Rd | 2 man/regsaude_female_pop_totals.Rd | 2 man/regsaude_male_pop.Rd | 2 man/regsaude_male_pop_totals.Rd | 2 man/regsaude_pop_age.Rd | 2 man/regsaude_pop_totals.Rd | 2 man/regsaude_sex_pop.Rd | 2 man/uf_female_pop_totals.Rd | 2 man/uf_male_pop_totals.Rd | 2 man/uf_pop_age.Rd | 2 man/uf_pop_totals.Rd | 2 man/uf_sex_pop.Rd | 2 tests/testthat/test-pop_mun_consistency.R | 36 ++++++++++++ tests/testthat/test-pop_uf_consistency.R | 10 +++ 45 files changed, 186 insertions(+), 101 deletions(-)
Title: ISO11784 PIT Tag ID Format Converters
Description: Some tools to assist with converting International Organization for Standardization (ISO) standard 11784 (ISO11784) animal ID codes between 4 recognised formats commonly displayed on Passive Integrated Transponder (PIT) tag readers.
The most common formats are 15 digit decimal, e.g., 999123456789012, and 13 character hexadecimal 'dot' format, e.g., 3E7.1CBE991A14. These are referred
to in this package as isodecimal and isodothex. The other two formats are the raw hexadecimal representation of the ISO11784 binary
structure (see <https://en.wikipedia.org/wiki/ISO_11784_and_ISO_11785>). There are two 'flavours' of this format, a left and a right variation. Which flavour
a reader happens to output depends on if the developers decided to reverse the binary number or not before converting to hexadecimal, a decision based on
the fact that the PIT tags will transmit their binary code Least Significant Bit (LSB) first, or backwards basically.
Author: Graeme Diack [aut, cre]
Maintainer: Graeme Diack <graemediack@hotmail.com>
Diff between ISO11784Tools versions 1.1.4 dated 2023-03-01 and 1.2.0 dated 2025-02-24
DESCRIPTION | 6 +- MD5 | 24 +++++------ R/from_isodecimal_tform.R | 12 +++++ R/utilities.R | 8 ++- README.md | 9 +++- build/vignette.rds |binary inst/doc/ISO11784Tools.R | 8 +-- inst/doc/ISO11784Tools.Rmd | 6 -- inst/doc/ISO11784Tools.html | 58 ++++++++++++---------------- tests/testthat/test-from_isodecimal_tform.R | 27 +++++++++++-- tests/testthat/test-to_isodecimal_tform.R | 9 ++-- tests/testthat/test-utilities.R | 17 +++++--- vignettes/ISO11784Tools.Rmd | 6 -- 13 files changed, 109 insertions(+), 81 deletions(-)
Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests.
These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty,
(3) construct height-diameter models, (4) manage tree and plot coordinates,
(5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty.
To cite 'BIOMASS', please use citation("BIOMASS").
See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.
Author: Maxime Rejou-Mechain [aut, dtc],
Guillaume Cornu [aut] ,
Dominique Lamonica [aut, cre],
Arthur Bailly [aut],
Arthur Pere [aut],
Ariane Tanguy [aut],
Jerome Chave [dtc],
Ted Feldpausch [dtc],
Philippe Verley [ctb],
Camille Piponiot [aut],
Bruno Heraul [...truncated...]
Maintainer: Dominique Lamonica <dominique.lamonica@ird.fr>
Diff between BIOMASS versions 2.1.12 dated 2025-02-12 and 2.2.3 dated 2025-02-24
BIOMASS-2.1.12/BIOMASS/R/pkgname.R |only BIOMASS-2.1.12/BIOMASS/data/APG.rda |only BIOMASS-2.1.12/BIOMASS/data/KarnatakaForest.rda |only BIOMASS-2.1.12/BIOMASS/data/Taxo.rda |only BIOMASS-2.1.12/BIOMASS/inst/doc/BIOMASS.R |only BIOMASS-2.1.12/BIOMASS/inst/doc/BIOMASS.Rmd |only BIOMASS-2.1.12/BIOMASS/inst/doc/BIOMASS.html |only BIOMASS-2.1.12/BIOMASS/inst/doc/plot.R |only BIOMASS-2.1.12/BIOMASS/inst/doc/plot.Rmd |only BIOMASS-2.1.12/BIOMASS/inst/doc/plot.html |only BIOMASS-2.1.12/BIOMASS/inst/external |only BIOMASS-2.1.12/BIOMASS/man/APG.Rd |only BIOMASS-2.1.12/BIOMASS/man/KarnatakaForest.Rd |only BIOMASS-2.1.12/BIOMASS/man/Taxo.Rd |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_00_correctTaxo.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_00_cutplot.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_00_modelHD.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_01_correctCoordGPS.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_01_numberCorner.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_01_small_function.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_02_attributeTree.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_02_getWoodDensity.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_02_retrieveH.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_03_AGBmonteCarlo.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_03_attributeTreeCoord.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_03_computeAGB.R |only BIOMASS-2.1.12/BIOMASS/tests/testthat/test_04_summaryByPlot.R |only BIOMASS-2.1.12/BIOMASS/vignettes/BIOMASS.Rmd |only BIOMASS-2.1.12/BIOMASS/vignettes/plot.Rmd |only BIOMASS-2.2.3/BIOMASS/DESCRIPTION | 32 - BIOMASS-2.2.3/BIOMASS/MD5 | 150 +++--- BIOMASS-2.2.3/BIOMASS/NAMESPACE | 43 + BIOMASS-2.2.3/BIOMASS/NEWS | 47 + BIOMASS-2.2.3/BIOMASS/R/AGBmonteCarlo.R | 61 -- BIOMASS-2.2.3/BIOMASS/R/BIOMASS-package.R |only BIOMASS-2.2.3/BIOMASS/R/attributeTree.R | 1 BIOMASS-2.2.3/BIOMASS/R/attributeTreeCoord.R | 7 BIOMASS-2.2.3/BIOMASS/R/bilinear_interpolation.R |only BIOMASS-2.2.3/BIOMASS/R/cacheManager.R | 9 BIOMASS-2.2.3/BIOMASS/R/check_plot_coord.R |only BIOMASS-2.2.3/BIOMASS/R/computeAGB.R | 8 BIOMASS-2.2.3/BIOMASS/R/computeE.R | 12 BIOMASS-2.2.3/BIOMASS/R/computeFeldRegion.R | 2 BIOMASS-2.2.3/BIOMASS/R/correctCoordGPS.R | 4 BIOMASS-2.2.3/BIOMASS/R/correctTaxo.R | 167 +++--- BIOMASS-2.2.3/BIOMASS/R/cutPlot.R | 132 ++--- BIOMASS-2.2.3/BIOMASS/R/data_documentation.R | 127 ++--- BIOMASS-2.2.3/BIOMASS/R/divide_plot.R |only BIOMASS-2.2.3/BIOMASS/R/getTaxonomy.R | 19 BIOMASS-2.2.3/BIOMASS/R/getWoodDensity.R | 50 -- BIOMASS-2.2.3/BIOMASS/R/globals.R |only BIOMASS-2.2.3/BIOMASS/R/modelHD.R | 182 +++---- BIOMASS-2.2.3/BIOMASS/R/numberCorner.R | 1 BIOMASS-2.2.3/BIOMASS/R/predictHeight.R | 11 BIOMASS-2.2.3/BIOMASS/R/retrieveH.R | 11 BIOMASS-2.2.3/BIOMASS/R/subplot_summary.R |only BIOMASS-2.2.3/BIOMASS/R/summaryByPlot.R | 243 +++------- BIOMASS-2.2.3/BIOMASS/R/zzz.R |only BIOMASS-2.2.3/BIOMASS/README.md | 48 + BIOMASS-2.2.3/BIOMASS/build/vignette.rds |binary BIOMASS-2.2.3/BIOMASS/data/NouraguesCoords.rda |only BIOMASS-2.2.3/BIOMASS/data/NouraguesPlot201.rda |only BIOMASS-2.2.3/BIOMASS/data/NouraguesTrees.rda |only BIOMASS-2.2.3/BIOMASS/inst/CITATION | 2 BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_BIOMASS.R |only BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_BIOMASS.Rmd |only BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_BIOMASS.html |only BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_spatialized_trees_and_forest_stand_metrics.R |only BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_spatialized_trees_and_forest_stand_metrics.Rmd |only BIOMASS-2.2.3/BIOMASS/inst/doc/Vignette_spatialized_trees_and_forest_stand_metrics.html |only BIOMASS-2.2.3/BIOMASS/inst/extdata |only BIOMASS-2.2.3/BIOMASS/man/AGBmonteCarlo.Rd | 38 - BIOMASS-2.2.3/BIOMASS/man/BIOMASS-package.Rd | 151 ------ BIOMASS-2.2.3/BIOMASS/man/NouraguesCoords.Rd |only BIOMASS-2.2.3/BIOMASS/man/NouraguesPlot201.Rd |only BIOMASS-2.2.3/BIOMASS/man/NouraguesTrees.Rd |only BIOMASS-2.2.3/BIOMASS/man/attributeTreeCoord.Rd | 4 BIOMASS-2.2.3/BIOMASS/man/bilinear_interpolation.Rd |only BIOMASS-2.2.3/BIOMASS/man/check_plot_coord.Rd |only BIOMASS-2.2.3/BIOMASS/man/computeAGB.Rd | 9 BIOMASS-2.2.3/BIOMASS/man/correctTaxo.Rd | 4 BIOMASS-2.2.3/BIOMASS/man/cutPlot.Rd | 43 - BIOMASS-2.2.3/BIOMASS/man/divide_plot.Rd |only BIOMASS-2.2.3/BIOMASS/man/figures |only BIOMASS-2.2.3/BIOMASS/man/getTaxonomy.Rd | 5 BIOMASS-2.2.3/BIOMASS/man/getWoodDensity.Rd | 25 - BIOMASS-2.2.3/BIOMASS/man/modelHD.Rd | 40 - BIOMASS-2.2.3/BIOMASS/man/predictHeight.Rd | 2 BIOMASS-2.2.3/BIOMASS/man/retrieveH.Rd | 7 BIOMASS-2.2.3/BIOMASS/man/subplot_summary.Rd |only BIOMASS-2.2.3/BIOMASS/man/summaryByPlot.Rd | 57 -- BIOMASS-2.2.3/BIOMASS/tests/testthat/test-AGBmonteCarlo.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-bilinearInterpolation.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-check_coord_plot.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-computeAGB.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-correctTaxo.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-dividePlot.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-getWoodDensity.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-modelHD.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-retrieveH.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-small_function.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-subplot_summary.R |only BIOMASS-2.2.3/BIOMASS/tests/testthat/test-summaryByPlot.R |only BIOMASS-2.2.3/BIOMASS/vignettes/Vignette_BIOMASS.Rmd |only BIOMASS-2.2.3/BIOMASS/vignettes/Vignette_spatialized_trees_and_forest_stand_metrics.Rmd |only BIOMASS-2.2.3/BIOMASS/vignettes/img |only BIOMASS-2.2.3/BIOMASS/vignettes/saved_data |only 107 files changed, 788 insertions(+), 966 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Download, prepare and analyze data from large-scale assessments and
surveys with complex sampling and assessment design (see 'Rutkowski',
2010 <doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of
the package, see 'Mirazchiyski', 2021b (< [...truncated...]
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 1.5.0 dated 2024-09-23 and 1.5.5 dated 2025-02-24
DESCRIPTION | 26 MD5 | 24 NAMESPACE | 7 NEWS.md | 44 + R/RALSA.r | 10 R/common.r | 1503 ++++++++++++++++++++++++++++++++++++++++++----- R/lsa.convert.data.r | 13 R/lsa.download.data.r |only R/lsa.merge.data.r | 13 R/lsa.pcts.means.r | 2 inst/shiny/GUI/server.r | 1044 ++++++++++++++++++++++++++++---- inst/shiny/GUI/ui.r | 113 +++ man/RALSA.Rd | 1 man/lsa.download.data.Rd |only 14 files changed, 2478 insertions(+), 322 deletions(-)
Title: High-Performance Geocoding using 'photon'
Description: Features unstructured, structured and reverse geocoding using the
'photon' geocoding API <https://photon.komoot.io/>.
Facilitates the setup of local 'photon' instances to enable offline
geocoding.
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jonas.lieth@gesis.org>
Diff between photon versions 0.3.1 dated 2024-11-11 and 0.3.5 dated 2025-02-24
DESCRIPTION | 8 - MD5 | 81 +++++++------- NAMESPACE | 1 NEWS.md | 18 +++ R/assert.R | 84 +++++++++----- R/download-db.R | 11 - R/download-photon.R | 10 + R/geocode.R | 81 +++++++++++--- R/java.R | 3 R/new_photon.R | 6 - R/photon-package.R | 2 R/photon_local.R | 40 ++++--- R/purge.R | 21 +-- R/query_photon.R | 13 +- R/reverse.R | 29 ++--- R/run_photon.R | 52 ++++++--- R/structured.R | 30 ++--- R/utils.R | 57 ++++++++++ README.md | 4 inst/doc/nominatim-import.R | 230 ++++++++++++++++++++--------------------- inst/doc/nominatim-import.Rmd | 8 - inst/doc/nominatim-import.html | 10 - inst/doc/photon.R | 120 ++++++++++----------- inst/doc/photon.Rmd | 8 - inst/doc/photon.html | 10 - man/cmd_options.Rd | 10 - man/download_photon.Rd | 5 man/download_searchindex.Rd | 4 man/geocode.Rd | 74 ++++++++----- man/get_instance.Rd | 4 man/latinize.Rd |only man/new_photon.Rd | 6 - man/photon-package.Rd | 34 +++--- man/photon_local.Rd | 8 - man/purge_java.Rd | 6 - man/reverse.Rd | 60 +++++----- man/structured.Rd | 60 +++++----- tests/testthat/test-geocode.R | 39 ++++-- tests/testthat/test-setup.R | 5 tests/testthat/test-utils.R | 13 +- vignettes/nominatim-import.Rmd | 8 - vignettes/photon.Rmd | 8 - 42 files changed, 751 insertions(+), 530 deletions(-)
Title: Interpretable Machine Learning
Description: Interpretability methods to analyze the behavior and
predictions of any machine learning model. Implemented methods are:
Feature importance described by Fisher et al. (2018)
<doi:10.48550/arxiv.1801.01489>, accumulated local effects plots described by Apley
(2018) <doi:10.48550/arxiv.1612.08468>, partial dependence plots described by
Friedman (2001) <www.jstor.org/stable/2699986>, individual conditional
expectation ('ice') plots described by Goldstein et al. (2013)
<doi:10.1080/10618600.2014.907095>, local models (variant of 'lime')
described by Ribeiro et. al (2016) <doi:10.48550/arXiv.1602.04938>, the Shapley
Value described by Strumbelj et. al (2014)
<doi:10.1007/s10115-013-0679-x>, feature interactions described by
Friedman et. al <doi:10.1214/07-AOAS148> and tree surrogate models.
Author: Giuseppe Casalicchio [aut, cre],
Christoph Molnar [aut],
Patrick Schratz [aut]
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@lmu.de>
Diff between iml versions 0.11.3 dated 2024-04-27 and 0.11.4 dated 2025-02-24
DESCRIPTION | 8 MD5 | 24 NEWS.md | 296 ++++---- R/FeatureEffect.R | 1536 +++++++++++++++++++++---------------------- R/Shapley.R | 489 ++++++------- R/utils.R | 661 +++++++++--------- build/vignette.rds |binary inst/doc/intro.html | 109 +-- inst/doc/parallel.html | 51 - man/calculate.ale.cat.Rd | 2 man/calculate.ale.num.Rd | 2 man/calculate.ale.num.cat.Rd | 2 man/calculate.ale.num.num.Rd | 2 13 files changed, 1575 insertions(+), 1607 deletions(-)
Title: Fit, Simulate, and Diagnose Hierarchical Exponential-Family
Models for Big Networks
Description: A toolbox for analyzing and simulating large networks based on hierarchical exponential-family random graph models (HERGMs).'bigergm' implements the estimation for large networks efficiently building on the 'lighthergm' and 'hergm' packages. Moreover, the package contains tools for simulating networks with local dependence to assess the goodness-of-fit.
Author: Cornelius Fritz [aut, cre],
Michael Schweinberger [aut],
Shota Komatsu [aut],
Juan Nelson Martinez Dahbura [aut],
Takanori Nishida [aut],
Angelo Mele [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between bigergm versions 1.2.3 dated 2024-10-23 and 1.2.4 dated 2025-02-24
DESCRIPTION | 6 +-- MD5 | 14 +++---- R/bigergm.R | 2 - R/est_within.R | 2 - R/preprocess.R | 6 +-- inst/doc/bigergm.R | 2 - tests/testthat/test-start-from-given-cluster.R | 4 +- vignettes/bigergm.html | 44 +++++++++++++------------ 8 files changed, 41 insertions(+), 39 deletions(-)
Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut],
Chris Verschelden [aut],
Charly Marty [aut],
David Robelin [aut, cre],
Sabine Mercier [aut],
Sebastien Dejean [aut],
The authors of Eigen the library for the included version of Eigen
[cph]
Maintainer: David Robelin <david.robelin@inrae.fr>
Diff between localScore versions 1.0.10 dated 2023-11-02 and 2.0.1 dated 2025-02-24
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Title: 'Schwab API' Interface
Description: Use R to interface with the 'Charles Schwab Trade API' <https://developer.schwab.com/>.
Functions include authentication, trading, price requests, account information, and option
chains. A user will need a Schwab brokerage account and Schwab Individual Developer app. See README
for authentication process and examples.
Author: Anthony Trevisan [aut, cre]
Maintainer: Anthony Trevisan <anthonytrevisan@gmail.com>
Diff between schwabr versions 0.1.2 dated 2025-02-11 and 0.1.3 dated 2025-02-24
DESCRIPTION | 8 +++---- MD5 | 17 ++++++++------- NAMESPACE | 1 NEWS.md | 8 +++++-- R/other.R | 42 ++++++++++++++++++++++++++++++++++++-- README.md | 12 ++++++---- man/schwab_marketHours.Rd | 2 - man/schwab_transactSearch.Rd | 2 - man/schwab_userPreferences.Rd |only tests/testthat/test-testOutputs.R | 6 +++-- 10 files changed, 73 insertions(+), 25 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing
with meteorological data in the tidy data framework. Extends 'ggplot2'
for better plotting of scalar and vector fields and provides commonly
used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <eliocampitelli@gmail.com>
Diff between metR versions 0.17.0 dated 2025-01-13 and 0.18.0 dated 2025-02-24
DESCRIPTION | 8 +- MD5 | 44 +++++++------- NEWS.md | 6 + R/ReadNetCDF.R | 80 +++++++++++++++++++------ R/WriteNetCDF.R | 2 R/geom_contour_tanaka.R | 3 R/geom_streamline.R | 6 - R/label-scales.R | 6 - R/stat_contour2.r | 2 R/zzz.R | 21 ++++++ README.md | 2 inst/doc/Visualization-tools.R | 2 inst/doc/Visualization-tools.Rmd | 18 ++--- inst/doc/Visualization-tools.html | 90 +++++++++++++---------------- inst/doc/Working-with-data.html | 18 ++--- man/ReadNetCDF.Rd | 17 +++++ man/figures/field-1.png |binary man/figures/timeseries-1.png |binary man/label_scales.Rd | 6 - tests/testthat/Rplots.pdf |binary tests/testthat/test-vis-contour2.R | 4 - tests/testthat/test-vis-guide_colorstrip.R | 13 ++-- vignettes/Visualization-tools.Rmd | 18 ++--- 23 files changed, 210 insertions(+), 156 deletions(-)
Title: Multiple Fill and Colour Scales in 'ggplot2'
Description: Use multiple fill and colour scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <eliocampitelli@gmail.com>
Diff between ggnewscale versions 0.5.0 dated 2024-07-19 and 0.5.1 dated 2025-02-24
DESCRIPTION | 6 MD5 | 9 NEWS.md | 4 R/zzz.R |only README.md | 412 ++++++++++++++++++++----------- man/figures/README-unnamed-chunk-3-1.png |binary 6 files changed, 287 insertions(+), 144 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and
to carry out supervised dimensionality reduction. An implementation of
the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370>
is also provided. This is a complete re-implementation in R (and C++,
via the 'Rcpp' package): no Python installation is required. See the
uwot website (<https://github.com/jlmelville/uwot>) for more
documentation and examples.
Author: James Melville [aut, cre, cph],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb],
Dirk Eddelbuettel [ctb],
Wouter van der Bijl [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.2.2 dated 2024-04-21 and 0.2.3 dated 2025-02-24
DESCRIPTION | 14 ++- MD5 | 74 +++++++++---------- NEWS.md | 37 +++++++++ R/RcppExports.R | 4 - R/init.R | 136 +++++++++++++++++++++++++++--------- R/rspectra_init.R | 37 +++++++-- R/transform.R | 35 +++++++-- R/umap2.R | 33 ++++++-- R/uwot.R | 113 +++++++++++++++++++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/uwot.Rmd | 2 inst/doc/uwot.html | 26 +++--- inst/include/uwot/gradient.h | 14 ++- inst/include/uwot/perplexity.h | 4 - inst/include/uwot/smooth_knn.h | 8 +- inst/include/uwot/supervised.h | 4 - inst/include/uwot/tauprng.h | 15 +++ inst/include/uwot/update.h | 3 man/lvish.Rd | 20 ++++- man/optimize_graph_layout.Rd | 20 ++++- man/tumap.Rd | 20 ++++- man/umap.Rd | 20 ++++- man/umap2.Rd | 20 ++++- man/umap_transform.Rd | 9 ++ src/RcppExports.cpp | 8 +- src/nn_parallel.cpp | 4 - src/nn_parallel.h | 12 +-- src/r_uwot.cpp | 55 +++++++++----- src/rng.h | 12 ++- src/smooth_knn.cpp | 17 ++-- src/supervised.cpp | 21 ++--- tests/testthat/test_errors.R | 1 tests/testthat/test_normlaplacian.R | 52 ++++++------- tests/testthat/test_output.R | 52 +++++++++++-- tests/testthat/test_saveload.R | 39 ++++++++++ tests/testthat/test_transform.R | 30 +++++++ vignettes/uwot.Rmd | 2 38 files changed, 718 insertions(+), 255 deletions(-)
Title: Compare Microbial Networks of 'trans_network' Class of
'microeco' Package
Description: Compare microbial co-occurrence networks created from 'trans_network' class of 'microeco' package <https://github.com/ChiLiubio/microeco>.
This package is the extension of 'trans_network' class of 'microeco' package and especially useful when different networks are constructed and analyzed simultaneously.
Author: Chi Liu [aut, cre],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between meconetcomp versions 0.6.0 dated 2025-01-07 and 0.6.1 dated 2025-02-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/edge_tax_comp.R | 4 ++++ R/robustness.R | 19 +++++++++++-------- man/robustness.Rd | 5 ++++- 5 files changed, 26 insertions(+), 16 deletions(-)
Title: Plots 'D&D'-Style Alignment Charts
Description: 'D&D' alignment charts show 9 boxes with values for good
through evil and values for chaotic through lawful. This package
easily creates these alignment charts from user-provided image paths
and alignment values.
Author: Afton Coombs [aut, cre, cph],
Tan Ho [ctb]
Maintainer: Afton Coombs <aftoncoombs@gmail.com>
Diff between ggalignment versions 1.0.1 dated 2022-11-04 and 1.0.2 dated 2025-02-24
DESCRIPTION | 10 MD5 | 12 README.md | 8 build/vignette.rds |binary inst/doc/ggalignment.html | 162 +++++----- man/figures/README-example-chart-1.png |binary tests/testthat/_snaps/ggalignment/basic-alignment-chart-with-cats.svg | 8 7 files changed, 104 insertions(+), 96 deletions(-)