Title: Ranking using Probabilistic Models and Treatment Choice Criteria
Description: Implementation of a novel frequentist approach to produce clinically relevant treatment hierarchies in network meta-analysis. The method is based on treatment choice criteria (TCC) and probabilistic ranking models, as described by Evrenoglou et al. (2024) <DOI:10.48550/arXiv.2406.10612>. The TCC are defined using a rule based on the minimal clinically important difference. Using the defined TCC, the study-level data (i.e., treatment effects and standard errors) are first transformed into a preference format, indicating either a treatment preference (e.g., treatment A > treatment B) or a tie (treatment A = treatment B). The preference data are then synthesized using a probabilistic ranking model, which estimates the latent ability parameter of each treatment and produces the final treatment hierarchy. This parameter represents each treatment’s ability to outperform all the other competing treatments in the network. Consequently, larger ability estimates indicate higher position [...truncated...]
Author: Theodoros Evrenoglou [aut, cre]
,
Guido Schwarzer [aut]
Maintainer: Theodoros Evrenoglou <theodoros.evrenoglou@uniklinik-freiburg.de>
Diff between mtrank versions 0.1-0 dated 2025-01-31 and 0.1-1 dated 2025-02-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 9 +++++++++ R/antidepressants.R | 9 ++++++--- R/mtrank.R | 34 +++++++++++++++++++++++++++------- R/tcc.R | 12 ++++++------ inst/doc/mtrank-tutorial.pdf |binary man/antidepressants.Rd | 9 ++++++--- man/mtrank.Rd | 34 +++++++++++++++++++++++++++------- 9 files changed, 93 insertions(+), 38 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and technical writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.6.6 dated 2024-09-03 and 0.6.7 dated 2025-02-26
DESCRIPTION | 10 - MD5 | 54 +++--- NEWS.md | 16 + R/gdoc2qmd.R | 17 +- R/plot_smr.R | 68 ++++++-- R/tarpuy_plex.R | 97 +++++++++--- R/utils.R | 19 ++ R/yupana_analysis.R | 3 R/yupana_export.R | 57 ++----- R/yupana_import.R | 22 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/apps.html | 26 +-- inst/doc/heritability.html | 4 inst/doc/rticles.R | 32 +-- inst/doc/rticles.html | 28 +-- inst/doc/tarpuy.html | 4 inst/doc/yupana.html | 12 - inst/tarpuy/rsconnect/shinyapps.io/flavjack/tarpuy-test.dcf | 4 inst/tarpuy/server.R | 11 - inst/tarpuy/ui.R | 72 +++++--- inst/yupana/rsconnect/shinyapps.io/flavjack/yupana.dcf | 2 man/include_pdf.Rd | 42 ++--- man/plot_diagnostic.Rd | 66 ++++---- man/plot_smr.Rd | 12 - man/tarpuy_plex.Rd | 23 +- man/yupana_export.Rd | 4 man/yupana_import.Rd | 2 28 files changed, 425 insertions(+), 282 deletions(-)
Title: Data Simulation for Life Science and Breeding
Description: Data simulator including genotype, phenotype, pedigree,
selection and reproduction in R. It simulates most of reproduction process
of animals or plants and provides data for GS (Genomic Selection),
GWAS (Genome-Wide Association Study), and Breeding.
For ADI model, please see Kao C and Zeng Z (2002) <doi:10.1093/genetics/160.3.1243>.
For build.cov, please see B. D. Ripley (1987) <ISBN:9780470009604>.
Author: Dong Yin [aut],
Xuanning Zhang [aut],
Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Xiaohui Yuan [aut],
Xiang Zhou [aut],
Xinyun Li [aut],
Shuhong Zhao [aut],
Xiaolei Liu [cre, aut, cph]
Maintainer: Xiaolei Liu <xll198708@gmail.com>
Diff between simer versions 0.9.0.6 dated 2025-01-30 and 1.0.0 dated 2025-02-26
DESCRIPTION | 8 - MD5 | 154 ++++++++++++++++---------------- NAMESPACE | 178 ++++++++++++++++++------------------- R/simer.Data.R | 14 +- R/simer.Genotype.r | 22 +++- R/simer.Parameter.r | 22 ++-- R/simer.Phenotype.r | 24 ----- R/simer.Reproduces.r | 8 + R/simer.Selects.r | 8 - R/simer.r | 5 - README.md | 187 +++++++++++++++++++++++---------------- man/GxG.network.Rd | 66 ++++++------- man/IndPerGen.Rd | 90 +++++++++---------- man/annotation.Rd | 114 ++++++++++++------------ man/bigt.Rd | 78 ++++++++-------- man/build.cov.Rd | 76 ++++++++-------- man/cal.eff.Rd | 108 +++++++++++----------- man/checkEnv.Rd | 66 ++++++------- man/format_time.Rd | 56 +++++------ man/generate.map.Rd | 78 ++++++++-------- man/generate.pop.Rd | 68 +++++++------- man/geno.cvt1.Rd | 78 ++++++++-------- man/geno.cvt2.Rd | 78 ++++++++-------- man/genotype.Rd | 92 +++++++++---------- man/getfam.Rd | 72 +++++++-------- man/load_if_installed.Rd | 50 +++++----- man/logging.initialize.Rd | 52 +++++------ man/logging.log.Rd | 88 +++++++++--------- man/logging.print.Rd | 68 +++++++------- man/make_line.Rd | 66 ++++++------- man/mate.2waycro.Rd | 126 +++++++++++++------------- man/mate.3waycro.Rd | 126 +++++++++++++------------- man/mate.4waycro.Rd | 126 +++++++++++++------------- man/mate.Rd | 94 +++++++++---------- man/mate.assort.Rd | 122 ++++++++++++------------- man/mate.backcro.Rd | 126 +++++++++++++------------- man/mate.clone.Rd | 122 ++++++++++++------------- man/mate.dh.Rd | 122 ++++++++++++------------- man/mate.disassort.Rd | 122 ++++++++++++------------- man/mate.randexself.Rd | 122 ++++++++++++------------- man/mate.randmate.Rd | 122 ++++++++++++------------- man/mate.selfpol.Rd | 122 ++++++++++++------------- man/mate.userped.Rd | 115 ++++++++++++------------ man/mkl_env.Rd | 54 +++++------ man/param.annot.Rd | 108 +++++++++++----------- man/param.geno.Rd | 78 ++++++++-------- man/param.global.Rd | 88 +++++++++--------- man/param.pheno.Rd | 100 ++++++++++----------- man/param.reprod.Rd | 72 +++++++-------- man/param.sel.Rd | 84 ++++++++--------- man/param.simer.Rd | 76 ++++++++-------- man/paste_label.Rd | 62 ++++++------- man/phenotype.Rd | 208 ++++++++++++++++++++++---------------------- man/pop.geno.Rd | 42 ++++---- man/pop.map.Rd | 42 ++++---- man/print_accomplished.Rd | 54 +++++------ man/print_bar.Rd | 114 ++++++++++++------------ man/print_info.Rd | 140 ++++++++++++++--------------- man/remove_bigmatrix.Rd | 86 +++++++++--------- man/reproduces.Rd | 123 +++++++++++++------------- man/rule_wrap.Rd | 62 ++++++------- man/selects.Rd | 118 ++++++++++++------------ man/simer.Data.Bfile2MVP.Rd | 108 +++++++++++----------- man/simer.Data.Env.Rd | 118 ++++++++++++------------ man/simer.Data.Geno.Rd | 158 ++++++++++++++++----------------- man/simer.Data.Impute.Rd | 112 +++++++++++------------ man/simer.Data.Json.Rd | 128 +++++++++++++-------------- man/simer.Data.MVP2Bfile.Rd | 110 +++++++++++------------ man/simer.Data.MVP2MVP.Rd | 90 +++++++++---------- man/simer.Data.Map.Rd | 98 ++++++++++---------- man/simer.Data.Ped.Rd | 152 ++++++++++++++++---------------- man/simer.Data.Pheno.Rd | 122 ++++++++++++------------- man/simer.Data.Rd | 96 ++++++++++---------- man/simer.Data.SELIND.Rd | 102 ++++++++++----------- man/simer.Data.cHIBLUP.Rd | 114 ++++++++++++------------ man/simer.Rd | 82 ++++++++--------- man/simer.Version.Rd | 58 ++++++------ man/write.file.Rd | 68 +++++++------- 78 files changed, 3550 insertions(+), 3518 deletions(-)
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common descriptive
(univariate) statistics in concise tables available in a
variety of formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois [aut, cre]
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 1.1.0 dated 2025-02-20 and 1.1.1 dated 2025-02-26
DESCRIPTION | 6 - MD5 | 40 ++++---- NEWS.md | 9 + R/args_validation.R | 6 - R/descr.R | 11 +- R/dfSummary.R | 14 ++ R/freq.R | 10 +- R/helpers.R | 15 ++- R/parse_call.R | 8 + R/tb.R | 3 inst/doc/introduction.R | 57 +++++------ inst/doc/introduction.Rmd | 53 +++++------ inst/doc/introduction.html | 216 ++++++--------------------------------------- inst/doc/rmarkdown.R | 12 +- inst/doc/rmarkdown.Rmd | 17 +-- inst/doc/rmarkdown.html | 58 ++++++------ man/descr.Rd | 2 man/tb.Rd | 3 man/zap_attr.Rd | 4 vignettes/introduction.Rmd | 53 +++++------ vignettes/rmarkdown.Rmd | 17 +-- 21 files changed, 248 insertions(+), 366 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] ,
Marcia Barbosa [ctb],
Roger Bivand [ctb] ,
Andrew Brown [ctb],
Michael Chirico [ctb],
Emanuele Cordano [ctb] ,
Krzysztof Dyba [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb],
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.8-21 dated 2025-02-10 and 1.8-29 dated 2025-02-26
DESCRIPTION | 8 - MD5 | 68 ++++++------- NAMESPACE | 2 NEWS.md | 25 ++++ R/RcppExports.R | 12 +- R/extent.R | 1 R/gdal.R | 16 +-- R/generics.R | 5 R/options.R | 1 R/plot_vector.R | 11 -- R/sample.R | 255 ++++++++++++++++++++++++++++++++++++------------- R/time.R | 1 man/contour.Rd | 2 man/deepcopy.Rd | 23 +--- man/gdal.Rd | 5 man/merge.Rd | 2 man/panel.Rd | 2 man/rast.Rd | 2 man/roll.Rd | 14 +- man/rotate.Rd | 4 man/sample.Rd | 22 ++-- man/sapp.Rd | 2 src/RcppExports.cpp | 29 ++++- src/RcppFunctions.cpp | 35 +++++- src/focal.cpp | 6 - src/geos_methods.cpp | 14 ++ src/geos_spat.h | 7 - src/raster_methods.cpp | 4 src/read_gdal.cpp | 10 - src/read_ogr.cpp | 22 ++-- src/spatRaster.cpp | 2 src/spatRaster.h | 2 src/spatVector.cpp | 28 ++++- src/spatVector.h | 1 src/write_ogr.cpp | 26 ++++ 35 files changed, 457 insertions(+), 212 deletions(-)
Title: 1d Water Level Interpolation along the Rivers Elbe and Rhine
Description: An S4 class and several functions which utilize internally stored
datasets and gauging data enable 1d water level interpolation. The S4 class
(WaterLevelDataFrame) structures the computation and visualisation
of 1d water level information along the German federal waterways Elbe and
Rhine. 'hyd1d' delivers 1d water level data - extracted from the 'FLYS'
database - and validated gauging data - extracted from the hydrological
database 'WISKI7' - package-internally. For computations near real time
gauging data are queried externally from the 'PEGELONLINE REST API'
<https://pegelonline.wsv.de/webservice/dokuRestapi>.
Author: Arnd Weber [aut, cre] ,
Marcus Hatz [aut],
Wolfgang Stuermer [ctb],
Wilfried Wiechmann [ctb],
Benjamin Eberhardt [ctb]
Maintainer: Arnd Weber <arnd.weber@bafg.de>
Diff between hyd1d versions 0.5.2 dated 2024-07-06 and 0.5.3 dated 2025-02-26
DESCRIPTION | 10 MD5 | 20 - NEWS.md | 7 README.md | 11 build/partial.rdb |binary build/vignette.rds |binary inst/doc/hyd1d.R | 8 inst/doc/hyd1d.html | 728 ++++++++++++++++++++++---------------------- inst/doc/vignette_DE.R | 20 - inst/doc/vignette_DE.html | 754 +++++++++++++++++++++++----------------------- man/getPegelonlineW.Rd | 4 11 files changed, 789 insertions(+), 773 deletions(-)
Title: Exporting 'flextable' to 'xlsx' Files
Description: Exports 'flextable' objects to 'xlsx' files,
utilizing functionalities provided by 'flextable' and 'openxlsx2'.
Author: Tobias Heidler [aut, cre, cph]
Maintainer: Tobias Heidler <tobias.heidler@googlemail.com>
Diff between flexlsx versions 0.3.2 dated 2025-02-25 and 0.3.4 dated 2025-02-26
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 4 ++++ R/wb_apply_content.R | 32 ++++++++++---------------------- tests/testthat/test-RcppExports.R |only 5 files changed, 21 insertions(+), 28 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 18.1.0.1 dated 2025-01-08 and 19.0.1 dated 2025-02-26
arrow-18.1.0.1/arrow/tools/checksums/darwin-arm64-openssl-1.1/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/darwin-arm64-openssl-3.0/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/darwin-x86_64-openssl-1.1/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/darwin-x86_64-openssl-3.0/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/linux-openssl-1.0/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/linux-openssl-1.1/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/linux-openssl-3.0/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/windows/arrow-18.1.0.zip.sha512 |only arrow-18.1.0.1/arrow/tools/checksums/windows/arrow-18.1.0.zip.sha512-e |only arrow-18.1.0.1/arrow/tools/cpp/src/arrow/result_internal.h |only arrow-18.1.0.1/arrow/tools/cpp/src/generated/parquet_constants.cpp |only arrow-18.1.0.1/arrow/tools/cpp/src/generated/parquet_constants.h |only arrow-19.0.1/arrow/DESCRIPTION | 8 arrow-19.0.1/arrow/MD5 | 373 ++++--- arrow-19.0.1/arrow/NEWS.md | 11 arrow-19.0.1/arrow/R/arrow-package.R | 5 arrow-19.0.1/arrow/R/dplyr-distinct.R | 25 arrow-19.0.1/arrow/R/dplyr-funcs-agg.R | 25 arrow-19.0.1/arrow/R/dplyr-funcs-doc.R | 7 arrow-19.0.1/arrow/man/acero.Rd | 7 arrow-19.0.1/arrow/man/one.Rd |only arrow-19.0.1/arrow/src/filesystem.cpp | 7 arrow-19.0.1/arrow/tests/testthat/test-backwards-compatibility.R | 4 arrow-19.0.1/arrow/tests/testthat/test-dplyr-distinct.R | 89 + arrow-19.0.1/arrow/tools/checksums/darwin-arm64-openssl-1.1/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/darwin-arm64-openssl-3.0/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/darwin-x86_64-openssl-1.1/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/darwin-x86_64-openssl-3.0/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/linux-openssl-1.0/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/linux-openssl-1.1/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/linux-openssl-3.0/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/checksums/windows/arrow-19.0.1.zip.sha512 |only arrow-19.0.1/arrow/tools/cpp/Brewfile | 2 arrow-19.0.1/arrow/tools/cpp/CMakeLists.txt | 4 arrow-19.0.1/arrow/tools/cpp/CMakeLists.txt-e | 4 arrow-19.0.1/arrow/tools/cpp/CMakePresets.json | 4 arrow-19.0.1/arrow/tools/cpp/README.md | 2 arrow-19.0.1/arrow/tools/cpp/build-support/lint_exclusions.txt | 1 arrow-19.0.1/arrow/tools/cpp/cmake_modules/BuildUtils.cmake | 51 - arrow-19.0.1/arrow/tools/cpp/cmake_modules/DefineOptions.cmake | 22 arrow-19.0.1/arrow/tools/cpp/cmake_modules/SetupCxxFlags.cmake | 15 arrow-19.0.1/arrow/tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 37 arrow-19.0.1/arrow/tools/cpp/src/arrow/CMakeLists.txt | 40 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/ArrowAceroConfig.cmake.in | 1 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/accumulation_queue.h | 1 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/asof_join_node.cc | 40 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/concurrent_queue_internal.h | 20 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/doc/key_map.md | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/hash_join_benchmark.cc | 121 ++ arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/options.h | 9 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/partition_util.h | 5 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/sorted_merge_node.cc | 6 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/source_node.cc | 5 arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/swiss_join.cc | 467 ++++------ arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/swiss_join_avx2.cc | 339 ++++++- arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/swiss_join_internal.h | 151 ++- arrow-19.0.1/arrow/tools/cpp/src/arrow/acero/test_util_internal.cc | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/adapters/orc/adapter.cc | 16 arrow-19.0.1/arrow/tools/cpp/src/arrow/adapters/orc/util.cc | 1 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/array_base.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/array_primitive.h | 18 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/builder_nested.h | 6 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/builder_primitive.h | 6 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/data.h | 14 arrow-19.0.1/arrow/tools/cpp/src/arrow/array/statistics.h | 73 + arrow-19.0.1/arrow/tools/cpp/src/arrow/c/abi.h | 227 ++++ arrow-19.0.1/arrow/tools/cpp/src/arrow/c/bridge.cc | 356 +++++++ arrow-19.0.1/arrow/tools/cpp/src/arrow/c/bridge.h | 80 + arrow-19.0.1/arrow/tools/cpp/src/arrow/chunk_resolver.cc | 10 arrow-19.0.1/arrow/tools/cpp/src/arrow/chunk_resolver.h | 10 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/CMakeLists.txt | 18 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/api_scalar.cc | 9 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/api_scalar.h | 58 + arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/expression.cc | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/function_internal.cc | 16 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/base_arithmetic_internal.h | 8 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/chunked_internal.cc |only arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/chunked_internal.h | 123 ++ arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/scalar_arithmetic.cc | 149 +++ arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_nested.cc | 78 + arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_numeric.cc | 177 +++ arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_string.cc | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/vector_rank.cc | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort.cc | 279 +++-- arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort_internal.h | 141 ++- arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/key_map_internal.cc | 30 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/key_map_internal.h | 25 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/key_map_internal_avx2.cc | 55 - arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/light_array_internal.h | 8 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/row/grouper.cc | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/compute/row/row_encoder_internal.h | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/csv/writer.cc | 34 arrow-19.0.1/arrow/tools/cpp/src/arrow/dataset/ArrowDatasetConfig.cmake.in | 8 arrow-19.0.1/arrow/tools/cpp/src/arrow/dataset/CMakeLists.txt | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/dataset/scanner.cc | 11 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/expression_internal.cc | 38 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/expression_internal.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/extended_expression_internal.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/extension_set.cc | 11 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/plan_internal.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/relation_internal.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/serde.cc | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/test_plan_builder.cc | 6 arrow-19.0.1/arrow/tools/cpp/src/arrow/engine/substrait/util_internal.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/extension_type.h | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/azurefs.cc | 89 + arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/azurefs.h | 14 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/filesystem.cc | 36 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/gcsfs.cc | 7 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/gcsfs.h | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3_internal.h | 87 + arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3_test_cert_internal.h |only arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3_test_util.cc | 84 + arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3_test_util.h | 11 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3fs.cc | 99 +- arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3fs.h | 43 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/s3fs_benchmark.cc | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/test_util.cc | 62 + arrow-19.0.1/arrow/tools/cpp/src/arrow/filesystem/test_util.h | 5 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/sql/client.cc | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/sql/protocol_internal.cc | 5 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/sql/protocol_internal.h | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/sql/server.cc | 7 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/test_definitions.h | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/transport/ucx/ucx.h | 2 arrow-19.0.1/arrow/tools/cpp/src/arrow/flight/types.h | 3 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arrow-19.0.1/arrow/tools/cpp/src/arrow/util/parallel.h | 14 arrow-19.0.1/arrow/tools/cpp/src/arrow/util/span.h | 34 arrow-19.0.1/arrow/tools/cpp/src/arrow/util/string_builder.h | 8 arrow-19.0.1/arrow/tools/cpp/src/arrow/util/thread_pool.cc | 69 + arrow-19.0.1/arrow/tools/cpp/src/arrow/util/ubsan.h | 4 arrow-19.0.1/arrow/tools/cpp/src/arrow/vendored/datetime/README.md | 3 arrow-19.0.1/arrow/tools/cpp/src/arrow/vendored/datetime/date.h | 8 arrow-19.0.1/arrow/tools/cpp/src/parquet/CMakeLists.txt | 8 arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/reader.cc | 84 + arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/reader.h | 51 + arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/reader_internal.cc | 4 arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/reader_internal.h | 1 arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/schema.cc | 122 +- arrow-19.0.1/arrow/tools/cpp/src/parquet/arrow/test_util.h | 4 arrow-19.0.1/arrow/tools/cpp/src/parquet/column_page.h | 22 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Title: Time-to-Event Dose-Finding Design for Multiple Toxicity Grades
Description: In some phase I trials, the design goal is to find the dose associated with a certain target toxicity rate or the dose with a certain weighted sum of rates of various toxicity grades. 'TITEgBOIN' provides the set up and calculations needed to run a dose-finding trial using bayesian optimal interval (BOIN) (Yuan et al. (2016) <doi:10.1158/1078-0432.CCR-16-0592>), generalized bayesian optimal interval (gBOIN) (Mu et al. (2019) <doi:10.1111/rssc.12263>), time-to-event bayesian optimal interval (TITEBOIN) (Lin et al. (2020) <doi:10.1093/biostatistics/kxz007>) and time-to-event generalized bayesian optimal interval (TITEgBOIN) (Takeda et al. (2022) <doi:10.1002/pst.2182>) designs. 'TITEgBOIN' can conduct tasks: run simulations and get operating characteristics; determine the dose for the next cohort; select maximum tolerated dose (MTD). These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose limiting toxicity (DLT) [...truncated...]
Author: Jing Zhu [cre, aut],
Jun Zhang [aut],
Kentaro Takeda [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>
Diff between TITEgBOIN versions 0.3.0 dated 2023-12-01 and 0.4.0 dated 2025-02-26
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 17 - R/get_oc_TITE_QuasiBOIN.R | 385 ++++++++++++++++++++++++++-------- R/next_TITE_QuasiBOIN.R | 126 ++++++++--- R/select_mtd_TITE_QuasiBOIN.R | 69 ++++-- man/get_oc_TITE_QuasiBOIN.Rd | 433 +++++++++++++++++++-------------------- man/next_TITE_QuasiBOIN.Rd | 289 ++++++++++++-------------- man/select_mtd_TITE_QuasiBOIN.Rd | 173 +++++++-------- 9 files changed, 899 insertions(+), 617 deletions(-)
Title: A Collection of Modified R Functions to Make Basic Coding More
Convenient
Description: A collection of recycled and modified R functions to aid in file manipulation, data exploration, wrangling, optimization, and object manipulation. Other functions aid in convenient data visualization, loop progression, software packaging, and installation.
Author: Paul Little [aut, cre]
Maintainer: Paul Little <pllittle321@gmail.com>
Diff between smarter versions 1.0.0 dated 2025-01-29 and 1.0.1 dated 2025-02-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/basic.R | 10 +++++----- R/latex.R | 36 +++++++++++++++++------------------- R/make_menu.R | 8 ++++---- R/plots.R | 16 ++++++++-------- 6 files changed, 43 insertions(+), 45 deletions(-)