Title: Settings and File I/O using a Configuration YAML File
Description: R data pipelines commonly require reading and writing data to versioned
directories. Each directory might correspond to one step of a multi-step process,
where that version corresponds to particular settings for that step and a chain of
previous steps that each have their own versions. This package creates a configuration
object that makes it easy to read and write versioned data, based on YAML
configuration files loaded and saved to each versioned folder.
Author: Nathaniel Henry [aut, cre]
Maintainer: Nathaniel Henry <nat@henryspatialanalysis.com>
Diff between versioning versions 0.1.0 dated 2023-11-09 and 0.2.0 dated 2025-03-10
DESCRIPTION | 14 +-- LICENSE | 2 MD5 | 19 ++--- NAMESPACE | 8 -- R/Config.R | 42 +++++------ R/autoread.R | 69 ++++++++++++------ R/autowrite.R | 51 ++++++++----- R/misc.R |only inst/doc/versioning.R | 2 inst/doc/versioning.html | 148 +++++++++++++++++++-------------------- man/qstop.Rd |only man/require_namespace_or_stop.Rd |only 12 files changed, 194 insertions(+), 161 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper
functions.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 12.1.0 dated 2025-01-27 and 12.2.0 dated 2025-03-10
ggblanket-12.1.0/ggblanket/man/set_font_defaults.Rd |only ggblanket-12.1.0/ggblanket/man/set_reference_defaults.Rd |only ggblanket-12.1.0/ggblanket/man/weave_col_palette.Rd |only ggblanket-12.1.0/ggblanket/man/weave_geom_defaults.Rd |only ggblanket-12.1.0/ggblanket/man/weave_label_case.Rd |only ggblanket-12.1.0/ggblanket/man/weave_theme.Rd |only ggblanket-12.2.0/ggblanket/DESCRIPTION | 6 ggblanket-12.2.0/ggblanket/MD5 | 354 +-- ggblanket-12.2.0/ggblanket/NAMESPACE | 10 ggblanket-12.2.0/ggblanket/NEWS.md | 10 ggblanket-12.2.0/ggblanket/R/dark_mode.R | 11 ggblanket-12.2.0/ggblanket/R/flex_mode.R | 19 ggblanket-12.2.0/ggblanket/R/gg_blanket.R | 57 ggblanket-12.2.0/ggblanket/R/gg_label.R | 2 ggblanket-12.2.0/ggblanket/R/gg_text.R | 2 ggblanket-12.2.0/ggblanket/R/light_mode.R | 7 ggblanket-12.2.0/ggblanket/R/scale_symmetric.R | 74 ggblanket-12.2.0/ggblanket/R/set.R | 29 ggblanket-12.2.0/ggblanket/R/weave.R | 56 ggblanket-12.2.0/ggblanket/inst/WORDLIST | 1 ggblanket-12.2.0/ggblanket/inst/doc/ggblanket.R | 43 ggblanket-12.2.0/ggblanket/inst/doc/ggblanket.Rmd | 62 ggblanket-12.2.0/ggblanket/inst/doc/ggblanket.html | 130 - ggblanket-12.2.0/ggblanket/man/dark_mode_r.Rd | 9 ggblanket-12.2.0/ggblanket/man/flex_mode_b.Rd | 4 ggblanket-12.2.0/ggblanket/man/flex_mode_base.Rd | 4 ggblanket-12.2.0/ggblanket/man/flex_mode_r.Rd | 4 ggblanket-12.2.0/ggblanket/man/flex_mode_t.Rd | 4 ggblanket-12.2.0/ggblanket/man/gg_area.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_bar.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_bin_2d.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_blanket.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_boxplot.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_col.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_contour.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_contour_filled.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_crossbar.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_density.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_density_2d.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_density_2d_filled.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_errorbar.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_freqpoly.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_function.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_hex.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_histogram.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_jitter.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_label.Rd | 8 ggblanket-12.2.0/ggblanket/man/gg_line.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_linerange.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_path.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_point.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_pointrange.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_polygon.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_qq.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_quantile.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_raster.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_rect.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_ribbon.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_ribbon_line.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_rug.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_segment.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_sf.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_smooth.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_step.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_text.Rd | 8 ggblanket-12.2.0/ggblanket/man/gg_tile.Rd | 6 ggblanket-12.2.0/ggblanket/man/gg_violin.Rd | 6 ggblanket-12.2.0/ggblanket/man/light_mode_r.Rd | 5 ggblanket-12.2.0/ggblanket/man/scale_x_symmetric.Rd | 36 ggblanket-12.2.0/ggblanket/man/scale_y_symmetric.Rd | 34 ggblanket-12.2.0/ggblanket/man/set_blanket.Rd | 10 ggblanket-12.2.0/ggblanket/man/set_geom_font.Rd |only ggblanket-12.2.0/ggblanket/man/set_geom_reference_line.Rd |only ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-area.svg | 84 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-bar.svg | 74 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-bin-2d.svg | 684 ++--- ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-blanket.svg | 86 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-boxplot.svg | 124 - 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ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-qq.svg | 916 +++---- ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-quantile.svg | 98 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-raster.svg | 112 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-rect.svg | 98 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-ribbon.svg | 94 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-segment.svg | 100 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-smooth.svg | 120 - ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-step.svg | 88 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-text.svg | 82 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-tile.svg | 64 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-demo-light/gg-violin.svg | 86 ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-go-further/1.svg | 248 +- ggblanket-12.2.0/ggblanket/tests/testthat/_snaps/article-go-further/10.svg | 136 - 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Title: Missing Data for Marked Hawkes Process
Description: Estimation of model parameters for marked Hawkes process.
Accounts for missing data in the estimation of the parameters.
Technical details found in (Tucker et al., 2019 <DOI:10.1016/j.spasta.2018.12.004>).
Author: J. Derek Tucker [aut, cre],
Lyndsay Shand [aut],
Stephen Rowe [aut],
John Lewis [aut]
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>
Diff between stpphawkes versions 0.2.1 dated 2023-08-15 and 0.2.2 dated 2025-03-10
DESCRIPTION | 12 ++-- MD5 | 42 ++++++++--------- NEWS.md | 4 + R/mcmc.R | 61 +++++++++++++------------ R/simulate_stpp_hawkes.R | 4 - R/stpphawkes-package.R | 3 - README.md | 2 man/mcmc_stpp.Rd | 13 ++--- man/mcmc_stpp_nonunif.Rd | 13 ++--- man/mcmc_temporal.Rd | 13 ++--- man/mcmc_temporal_catmark.Rd | 11 ++-- man/mcmc_temporal_contmark.Rd | 11 ++-- man/stpphawkes.Rd | 19 +++++++ src/RcppExports.cpp | 6 +- src/condInt_mcmc_stpp_branching.cpp | 5 +- src/condInt_mcmc_stpp_branching_md.cpp | 16 ++++++ src/condInt_mcmc_stpp_branching_nonunif.cpp | 5 +- src/condInt_mcmc_stpp_branching_nonunif_md.cpp | 13 +++++ src/condInt_mcmc_temporal.cpp | 6 +- src/condInt_mcmc_temporal_branching.cpp | 11 +++- src/condInt_mcmc_temporal_branching_md.cpp | 23 ++++++--- src/condInt_mcmc_temporal_md.cpp | 10 +++- 22 files changed, 198 insertions(+), 105 deletions(-)
Title: Easy Graphs for Data Visualisation and Linear Models for ANOVA
Description: Easily explore data by plotting graphs with a few lines of code. Use these ggplot() wrappers to quickly draw graphs of scatter/dots with box-whiskers, violins or SD error bars, data distributions, before-after graphs, factorial ANOVA and more. Customise graphs in many ways, for example, by choosing from colour blind-friendly palettes (12 discreet, 3 continuous and 2 divergent palettes). Use the simple code for ANOVA as ordinary (lm()) or mixed-effects linear models (lmer()), including randomised-block or repeated-measures designs, and fit non-linear outcomes as a generalised additive model (gam) using mgcv(). Obtain estimated marginal means and perform post-hoc comparisons on fitted models (via emmeans()). Also includes small datasets for practising code and teaching basics before users move on to more complex designs. See vignettes for details on usage <https://grafify.shenoylab.com/>. Citation: <doi:10.5281/zenodo.5136508>.
Author: Avinash R Shenoy [cre, aut]
Maintainer: Avinash R Shenoy <a.shenoy@imperial.ac.uk>
Diff between grafify versions 5.0.0 dated 2025-03-09 and 5.0.0.1 dated 2025-03-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- tests/testthat/test-mixed_anova.R | 12 ++++++------ tests/testthat/test-mixed_anova_slopes.R | 16 ++++++++-------- tests/testthat/test-mixed_model.R | 12 ++++++------ 5 files changed, 28 insertions(+), 28 deletions(-)
Title: Benjamini-Hochberg Alpha Correction
Description: Provides the alpha-adjustment correction from "Benjamini, Y., & Hochberg, Y. (1995) <doi:10.1111/j.2517-6161.1995.tb02031.x> Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal statistical society: series B (Methodological), 57(1), 289-300". For researchers interested in using the exact mathematical formulas and procedures as used in the original paper.
Author: Michael Mogessie [aut, cre]
Maintainer: Michael Mogessie <mogessie@upenn.edu>
Diff between alpha.correction.bh versions 0.0.1 dated 2023-04-26 and 0.0.2 dated 2025-03-10
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ NEWS.md | 4 +- R/alpha_correction_bh.R | 12 +++++--- build/vignette.rds |binary inst/doc/alpha-correction-bh.R | 2 - inst/doc/alpha-correction-bh.html | 6 ++-- man/get_alphas_bh.Rd | 2 - tests/testthat/test-alpha_correction_bh.R | 42 +++++++++++++++++++++++++++--- 9 files changed, 64 insertions(+), 28 deletions(-)
More information about alpha.correction.bh at CRAN
Permanent link
Title: Read/Write, Analyze, and Visualize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between rbiom versions 2.0.13 dated 2025-01-24 and 2.1.1 dated 2025-03-10
rbiom-2.0.13/rbiom/man/convert_to_SE.Rd |only rbiom-2.1.1/rbiom/DESCRIPTION | 10 - rbiom-2.1.1/rbiom/MD5 | 67 +++--- rbiom-2.1.1/rbiom/NAMESPACE | 6 rbiom-2.1.1/rbiom/R/as_rbiom.r | 92 ++++++--- rbiom-2.1.1/rbiom/R/bdiv_heatmap.r | 5 rbiom-2.1.1/rbiom/R/bdiv_ord_plot.r | 5 rbiom-2.1.1/rbiom/R/bdiv_ord_table.r | 4 rbiom-2.1.1/rbiom/R/bdiv_table.r | 5 rbiom-2.1.1/rbiom/R/convert.r | 52 +++-- rbiom-2.1.1/rbiom/R/documentation.r | 4 rbiom-2.1.1/rbiom/R/import_table.r | 24 ++ rbiom-2.1.1/rbiom/R/rbiom-deprecated.r | 8 rbiom-2.1.1/rbiom/R/rbiom_objects.r | 12 - rbiom-2.1.1/rbiom/R/read_biom.r | 2 rbiom-2.1.1/rbiom/R/read_tree.r | 18 + rbiom-2.1.1/rbiom/R/validate.r | 6 rbiom-2.1.1/rbiom/R/write_biom.r | 206 ++++++++++++++++++++- rbiom-2.1.1/rbiom/README.md | 6 rbiom-2.1.1/rbiom/build/partial.rdb |binary rbiom-2.1.1/rbiom/man/as_rbiom.Rd | 4 rbiom-2.1.1/rbiom/man/bdiv_heatmap.Rd | 5 rbiom-2.1.1/rbiom/man/bdiv_ord_plot.Rd | 5 rbiom-2.1.1/rbiom/man/bdiv_ord_table.Rd | 5 rbiom-2.1.1/rbiom/man/bdiv_table.Rd | 7 rbiom-2.1.1/rbiom/man/convert_to.Rd |only rbiom-2.1.1/rbiom/man/documentation_default.Rd | 4 rbiom-2.1.1/rbiom/man/export.Rd |only rbiom-2.1.1/rbiom/man/rbiom-deprecated.Rd | 1 rbiom-2.1.1/rbiom/man/read_tree.Rd | 6 rbiom-2.1.1/rbiom/man/tree_subset.Rd | 6 rbiom-2.1.1/rbiom/src/init.c | 4 rbiom-2.1.1/rbiom/src/read_tree.c | 184 ++++++++---------- rbiom-2.1.1/rbiom/tests/testthat/test-as_rbiom.r | 7 rbiom-2.1.1/rbiom/tests/testthat/test-convert.r | 24 ++ rbiom-2.1.1/rbiom/tests/testthat/test-write_biom.r | 18 + 36 files changed, 591 insertions(+), 221 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 1.6.6 dated 2024-05-19 and 1.6.7 dated 2025-03-10
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 3 +++ NEWS.md | 4 ++++ R/aaa.R | 2 +- R/full_factor.R | 8 ++++++++ R/kclus.R | 15 +++++++++++++++ R/mds.R | 32 ++++++++++++++++++-------------- R/pre_factor.R | 10 +++++++++- README.md | 2 +- 10 files changed, 73 insertions(+), 31 deletions(-)
More information about radiant.multivariate at CRAN
Permanent link
Title: Sparse Vectors for Use in Data Frames
Description: Provides sparse vectors powered by ALTREP (Alternative
Representations for R Objects) that behave like regular vectors, and
can thus be used in data frames. Also provides tools to convert
between sparse matrices and data frames with sparse columns and
functions to interact with sparse vectors.
Author: Emil Hvitfeldt [aut, cre] ,
Davis Vaughan [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between sparsevctrs versions 0.2.0 dated 2025-01-22 and 0.3.0 dated 2025-03-10
DESCRIPTION | 6 MD5 | 103 ++++++----- NAMESPACE | 10 + NEWS.md | 24 ++ R/arithmatic.R |only R/coerce-vector.R | 14 - R/coerce.R | 60 +++--- R/extractors.R | 21 +- R/has_sparse_elements.R | 18 - R/import-standalone-obj-type.R | 107 ++++++----- R/import-standalone-types-check.R | 290 ++++++++++++++++++-------------- R/options.R | 26 +- R/sparse_character.R | 46 ++--- R/sparse_double.R | 42 ++-- R/sparse_dummy.R | 32 +-- R/sparse_integer.R | 46 ++--- R/sparse_is_na.R |only R/sparse_lag.R |only R/sparse_logical.R | 46 ++--- R/sparse_mean.R | 44 +++- R/sparse_median.R | 19 -- R/sparse_replace_na.R |only R/sparse_sd.R | 18 - R/sparse_sqrt.R |only R/sparse_var.R | 25 +- R/sparse_which_na.R |only R/sparsity.R | 27 +- R/type-predicates.R | 36 ++- R/validate-input.R | 16 - man/coerce-vector.Rd | 2 man/sparse-arithmatic-scalar.Rd |only man/sparse-arithmatic.Rd |only man/sparse_is_na.Rd |only man/sparse_lag.Rd |only man/sparse_mean.Rd | 4 man/sparse_replace_na.Rd |only man/sparse_sqrt.Rd |only man/sparse_which_na.Rd |only src/altrep-sparse-double.c | 18 + src/altrep-sparse-double.h |only src/altrep-sparse-integer.c | 18 + src/altrep-sparse-integer.h |only src/altrep-sparse-logical.c | 4 src/altrep-sparse-string.c | 4 src/init.c | 5 src/sparse-arithmatic.c |only src/sparse-arithmatic.h |only src/sparse-utils.c | 73 ++++++++ src/sparse-utils.h | 6 tests/testthat/test-arithmatic.R |only tests/testthat/test-coerce-vector.R | 13 + tests/testthat/test-coerce.R | 81 ++++---- tests/testthat/test-sparse_character.R | 31 ++- tests/testthat/test-sparse_double.R | 14 - tests/testthat/test-sparse_dummy.R | 19 -- tests/testthat/test-sparse_integer.R | 15 - tests/testthat/test-sparse_is_na.R |only tests/testthat/test-sparse_lag.R |only tests/testthat/test-sparse_logical.R | 34 ++- tests/testthat/test-sparse_mean.R | 41 ++++ tests/testthat/test-sparse_replace_na.R |only tests/testthat/test-sparse_sqrt.R |only tests/testthat/test-sparse_which_na.R |only tests/testthat/test-sparsity.R | 10 - 64 files changed, 891 insertions(+), 577 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package <doi:10.1093/bioadv/vbad048>. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb] ,
Ryan C. Thompson [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between nestedcv versions 0.7.12 dated 2024-11-27 and 0.8.0 dated 2025-03-10
DESCRIPTION | 20 +- MD5 | 54 +++--- NAMESPACE | 9 - NEWS.md | 17 + R/nestcv.train.R | 65 +++++-- R/nestcv_SuperLearner.R | 24 ++ R/nestedcv.R | 29 ++- R/one_hot.R | 6 R/outercv.R | 96 ++++++++--- R/repeatcv.R | 141 ++++++++++------ R/shap.R | 46 +---- build/vignette.rds |binary inst/doc/nestedcv.R | 382 +++++++++++++++++++++++--------------------- inst/doc/nestedcv.Rmd | 33 +++ inst/doc/nestedcv.html | 101 +++++++---- inst/doc/nestedcv_hsstan.R | 280 ++++++++++++++++---------------- inst/doc/nestedcv_shap.R | 36 ++-- inst/doc/nestedcv_shap.Rmd | 19 +- inst/doc/nestedcv_shap.html | 18 +- man/nestcv.SuperLearner.Rd | 10 - man/nestcv.glmnet.Rd | 8 man/nestcv.train.Rd | 18 -- man/one_hot.Rd | 6 man/outercv.Rd | 16 - man/pred_nestcv_glmnet.Rd | 29 +-- man/repeatcv.Rd | 19 +- vignettes/nestedcv.Rmd | 33 +++ vignettes/nestedcv_shap.Rmd | 19 +- 28 files changed, 895 insertions(+), 639 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and res [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.7.0 dated 2025-02-02 and 0.7.1 dated 2025-03-10
DESCRIPTION | 10 MD5 | 252 +++++++++++----------- NAMESPACE | 295 +++++++++++++------------- NEWS.md | 51 ++++ R/aov.b.R | 254 +++++++++++------------ R/aov.w.R | 247 +++++++++------------- R/as.na.R | 249 +++++++++------------- R/blimp.plot.R | 23 +- R/center.R | 192 +++++++---------- R/ci.cor.R | 286 +++++++------------------- R/ci.mean.R | 375 +++++++++++----------------------- R/ci.mean.w.R | 58 +---- R/ci.prop.R | 224 +++++++------------- R/ci.var.R | 341 +++++++++---------------------- R/cluster.scores.R | 118 ++++------ R/coding.R | 65 ++--- R/cor.matrix.R | 122 +++++------ R/crosstab.R | 146 +++++-------- R/descript.R | 82 +++---- R/df.check.R | 55 ++--- R/df.duplicated.R | 108 ++++----- R/df.head.R | 245 ++++++++++++++-------- R/df.merge.R | 2 R/df.move.R | 24 +- R/df.rbind.R | 267 +----------------------- R/df.rename.R | 230 +++++++++++++++----- R/df.sort.R | 33 +-- R/df.subset.R | 110 +++------- R/effsize.R | 83 +++---- R/freq.R | 148 +++++-------- R/item.alpha.R | 95 +++----- R/item.cfa.R | 134 +++++------- R/item.invar.R | 152 ++++++------- R/item.omega.R | 94 +++----- R/item.reverse.R | 87 +++---- R/item.scores.R | 50 +--- R/lagged.R | 120 +++++----- R/mplus.plot.R | 26 +- R/multilevel.cfa.R | 147 +++++-------- R/multilevel.cor.R | 128 ++++------- R/multilevel.descript.R | 119 +++++----- R/multilevel.fit.R | 77 +++---- R/multilevel.icc.R | 130 ++++++----- R/multilevel.invar.R | 139 ++++-------- R/multilevel.omega.R | 111 +++------- R/multilevel.r2.R | 199 +++++++----------- R/multilevel.r2.manual.R | 168 ++++++--------- R/na.auxiliary.R | 86 ++----- R/na.coverage.R | 59 +---- R/na.descript.R | 69 ++---- R/na.indicator.R | 49 +--- R/na.pattern.R | 210 +++++-------------- R/na.prop.R | 49 +--- R/na.satcor.R | 12 - R/na.test.R | 61 +---- R/plot.misty.object.R |only R/print.misty.object.R | 25 ++ R/rec.R | 62 ++--- R/rwg.lindell.R | 95 +++----- R/skewness.R | 105 ++++----- R/test.levene.R | 210 ++++++++----------- R/test.t.R | 484 ++++++++++++++------------------------------ R/test.welch.R | 262 +++++++++-------------- R/test.z.R | 481 ++++++++++++++----------------------------- R/utils.R | 355 ++++++++++++++++++++++++++------ R/write.result.R | 43 +-- man/aov.b.Rd | 156 ++++++++------ man/aov.w.Rd | 145 ++++++------- man/as.na.Rd | 119 ++++------ man/blimp.plot.Rd | 10 man/center.Rd | 110 ++++------ man/check.resid.Rd | 14 - man/ci.cor.Rd | 182 +++++----------- man/ci.mean.Rd | 163 +++++++------- man/ci.mean.diff.Rd | 4 man/ci.mean.w.Rd | 32 +- man/ci.prop.Rd | 119 +++++----- man/ci.var.Rd | 155 ++++++-------- man/cluster.scores.Rd | 66 ++---- man/coding.Rd | 32 +- man/cor.matrix.Rd | 69 +++--- man/crosstab.Rd | 56 ++--- man/descript.Rd | 54 ++-- man/df.check.Rd | 4 man/df.duplicated.Rd | 48 ++-- man/df.head.Rd | 21 + man/df.move.Rd | 14 - man/df.rbind.Rd | 12 - man/df.rename.Rd | 52 ++++ man/df.sort.Rd | 8 man/df.subset.Rd | 98 ++++---- man/effsize.Rd | 58 ++--- man/freq.Rd | 68 ++---- man/item.alpha.Rd | 48 +--- man/item.cfa.Rd | 84 +++---- man/item.invar.Rd | 64 ++--- man/item.omega.Rd | 61 ++--- man/item.reverse.Rd | 38 +-- man/item.scores.Rd | 25 -- man/lagged.Rd | 43 +-- man/mplus.plot.Rd | 10 man/mplus.run.Rd | 2 man/multilevel.cfa.Rd | 90 +++----- man/multilevel.cor.Rd | 94 +++----- man/multilevel.descript.Rd | 86 +++---- man/multilevel.fit.Rd | 6 man/multilevel.icc.Rd | 66 ++---- man/multilevel.invar.Rd | 83 ++----- man/multilevel.omega.Rd | 82 +++---- man/multilevel.r2.Rd | 45 +++- man/multilevel.r2.manual.Rd | 35 ++- man/na.auxiliary.Rd | 22 -- man/na.coverage.Rd | 22 -- man/na.descript.Rd | 31 +- man/na.indicator.Rd | 28 +- man/na.pattern.Rd | 69 ++---- man/na.prop.Rd | 28 +- man/na.test.Rd | 17 - man/plot.misty.object.Rd |only man/rec.Rd | 51 ++-- man/result.lca.Rd | 2 man/rwg.lindell.Rd | 46 +--- man/skewness.Rd | 23 +- man/test.levene.Rd | 118 +++++----- man/test.t.Rd | 224 +++++++------------- man/test.welch.Rd | 178 +++++++--------- man/test.z.Rd | 246 ++++++++-------------- man/write.result.Rd | 38 +-- 128 files changed, 5802 insertions(+), 7560 deletions(-)
Title: Estimation of Model-Based Predictions, Contrasts and Means
Description: Implements a general interface for model-based estimations
for a wide variety of models, used in the computation of
marginal means, contrast analysis and predictions. For a list of supported models,
see 'insight::supported_models()'.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Remi Theriault [aut]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between modelbased versions 0.9.0 dated 2025-02-05 and 0.10.0 dated 2025-03-10
modelbased-0.10.0/modelbased/DESCRIPTION | 31 modelbased-0.10.0/modelbased/MD5 | 211 +++--- modelbased-0.10.0/modelbased/NAMESPACE | 16 modelbased-0.10.0/modelbased/NEWS.md | 84 ++ modelbased-0.10.0/modelbased/R/backtransform_predictions.R |only modelbased-0.10.0/modelbased/R/describe_nonlinear.R | 18 modelbased-0.10.0/modelbased/R/estimate_contrast_methods.R | 15 modelbased-0.10.0/modelbased/R/estimate_contrasts.R | 93 ++ modelbased-0.10.0/modelbased/R/estimate_contrasts_effectsize.R |only modelbased-0.10.0/modelbased/R/estimate_grouplevel.R | 125 ++- modelbased-0.10.0/modelbased/R/estimate_means.R | 184 +++-- modelbased-0.10.0/modelbased/R/estimate_predicted.R | 28 modelbased-0.10.0/modelbased/R/estimate_slopes.R | 38 - modelbased-0.10.0/modelbased/R/format.R | 156 ++++ modelbased-0.10.0/modelbased/R/get_emcontrasts.R | 72 +- modelbased-0.10.0/modelbased/R/get_emmeans.R | 39 + modelbased-0.10.0/modelbased/R/get_emtrends.R | 16 modelbased-0.10.0/modelbased/R/get_marginalcontrasts.R | 327 +++++----- modelbased-0.10.0/modelbased/R/get_marginaleffects_type.R | 88 ++ modelbased-0.10.0/modelbased/R/get_marginalmeans.R | 181 ++++- modelbased-0.10.0/modelbased/R/get_marginaltrends.R | 60 + modelbased-0.10.0/modelbased/R/options.R |only modelbased-0.10.0/modelbased/R/p_adjust.R |only modelbased-0.10.0/modelbased/R/pool.R |only modelbased-0.10.0/modelbased/R/print.R | 71 ++ modelbased-0.10.0/modelbased/R/print_html.R | 18 modelbased-0.10.0/modelbased/R/print_md.R | 22 modelbased-0.10.0/modelbased/R/reshape_grouplevel.R | 3 modelbased-0.10.0/modelbased/R/smoothing.R | 4 modelbased-0.10.0/modelbased/R/standardize_methods.R | 38 + modelbased-0.10.0/modelbased/R/summary.R | 103 +-- modelbased-0.10.0/modelbased/R/table_footer.R | 50 + modelbased-0.10.0/modelbased/R/utils.R | 25 modelbased-0.10.0/modelbased/R/visualisation_recipe.R | 31 modelbased-0.10.0/modelbased/R/visualisation_recipe_internal.R | 94 ++ modelbased-0.10.0/modelbased/R/zero_crossings.R | 8 modelbased-0.10.0/modelbased/R/zzz.R | 2 modelbased-0.10.0/modelbased/README.md | 51 + modelbased-0.10.0/modelbased/build/partial.rdb |binary modelbased-0.10.0/modelbased/build/vignette.rds |binary modelbased-0.10.0/modelbased/inst/WORDLIST | 50 + modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.html |only modelbased-0.10.0/modelbased/inst/doc/overview_of_vignettes.R | 2 modelbased-0.10.0/modelbased/inst/doc/overview_of_vignettes.Rmd | 25 modelbased-0.10.0/modelbased/inst/doc/overview_of_vignettes.html | 44 + modelbased-0.10.0/modelbased/man/estimate_contrasts.Rd | 208 ++++-- modelbased-0.10.0/modelbased/man/estimate_expectation.Rd | 10 modelbased-0.10.0/modelbased/man/estimate_grouplevel.Rd | 43 - modelbased-0.10.0/modelbased/man/estimate_means.Rd | 173 +++-- modelbased-0.10.0/modelbased/man/estimate_slopes.Rd | 58 + modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-10-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-11-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-12-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-13-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-14-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-15-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-16-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-17-1.png |only modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-3-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-4-1.png |only modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-5-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-6-1.png |only modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-7-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-8-1.png |binary modelbased-0.10.0/modelbased/man/figures/unnamed-chunk-9-1.png |binary modelbased-0.10.0/modelbased/man/get_emmeans.Rd | 188 +++-- modelbased-0.10.0/modelbased/man/modelbased-options.Rd |only modelbased-0.10.0/modelbased/man/modelbased-package.Rd | 1 modelbased-0.10.0/modelbased/man/pool_contrasts.Rd |only modelbased-0.10.0/modelbased/man/pool_predictions.Rd |only modelbased-0.10.0/modelbased/man/print.estimate_contrasts.Rd |only modelbased-0.10.0/modelbased/man/visualisation_recipe.estimate_predicted.Rd | 33 - 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More information about MicrobialGrowth at CRAN
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Title: Irregularly Observed Autoregressive Models
Description: Data sets, functions and scripts with examples to implement autoregressive models for irregularly observed time series. The models available in this package are the irregular autoregressive model (Eyheramendy et al.(2018) <doi:10.1093/mnras/sty2487>), the complex irregular autoregressive model (Elorrieta et al.(2019) <doi:10.1051/0004-6361/201935560>) and the bivariate irregular autoregressive model (Elorrieta et al.(2021) <doi:10.1093/mnras/stab1216>).
Author: Elorrieta Felipe [aut, cre],
Ojeda Cesar [aut],
Eyheramendy Susana [aut],
Palma Wilfredo [aut]
Maintainer: Elorrieta Felipe <felipe.elorrieta@usach.cl>
Diff between iAR versions 1.2.0 dated 2022-11-24 and 1.3.0 dated 2025-03-10
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More information about clayringsmiletus at CRAN
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Title: Analyzes Real-World Treatment Patterns of a Study Population of
Interest
Description: Computes treatment patterns within a given cohort using the Observational
Medical Outcomes Partnership (OMOP) common data model (CDM). As described
in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.
Author: Aniek Markus [aut] ,
Maarten van Kessel [cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between TreatmentPatterns versions 3.0.0 dated 2025-02-06 and 3.0.1 dated 2025-03-10
TreatmentPatterns-3.0.0/TreatmentPatterns/R/CharacterizationPlots.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/InputHandler.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/InteractivePlots.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/SankeyDiagram.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/ShinyApp.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/ShinyModule.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/R/SunburstPlot.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/CharacterizationPlots.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/InputHandler.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/SankeyDiagram.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/ShinyModule.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/SunburstPlot.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/man/launchResultsExplorer.Rd |only TreatmentPatterns-3.0.0/TreatmentPatterns/tests/testthat/test-CharacterizationPlots.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/tests/testthat/test-InputHandler.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/tests/testthat/test-InteractivePlots.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/tests/testthat/test-ShinyApp.R |only TreatmentPatterns-3.0.0/TreatmentPatterns/vignettes/articles/figures/desktop.ini |only TreatmentPatterns-3.0.0/TreatmentPatterns/vignettes/articles/usingTreatmentPatternsShinyModules.Rmd |only TreatmentPatterns-3.0.1/TreatmentPatterns/DESCRIPTION | 16 +- TreatmentPatterns-3.0.1/TreatmentPatterns/MD5 | 64 +++------- TreatmentPatterns-3.0.1/TreatmentPatterns/NAMESPACE | 10 - TreatmentPatterns-3.0.1/TreatmentPatterns/NEWS.md | 7 + TreatmentPatterns-3.0.1/TreatmentPatterns/R/TreatmentPatterns-package.R | 4 TreatmentPatterns-3.0.1/TreatmentPatterns/R/computePathways.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/R/executeTreatmentPatterns.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/R/export.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/R/ggSunburst.R |only TreatmentPatterns-3.0.1/TreatmentPatterns/R/plotEventDuration.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/inst/doc/DefiningCohorts.html | 16 +- TreatmentPatterns-3.0.1/TreatmentPatterns/man/computePathways.Rd | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/man/executeTreatmentPatterns.Rd | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/man/export.Rd | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/man/ggSunburst.Rd |only TreatmentPatterns-3.0.1/TreatmentPatterns/man/plotEventDuration.Rd | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/helper-ableToRun.R | 8 - TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/helper-generateCohortTableCDMC.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-CDMInterfaceCDMC.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-computePathways.R | 6 TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-ggSunburst.R |only TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-multipleCohortTables.R | 2 TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-pathwaysLogical.R | 60 ++++----- TreatmentPatterns-3.0.1/TreatmentPatterns/tests/testthat/test-pathwaysMultipleTargetsLogical.R | 10 - TreatmentPatterns-3.0.1/TreatmentPatterns/vignettes/articles/ComputingTreatmentPathways.Rmd | 2 44 files changed, 98 insertions(+), 127 deletions(-)
More information about TreatmentPatterns at CRAN
Permanent link
Title: Machine Learning for Merging Satellite and Ground Precipitation
Data
Description: A machine learning algorithm that merges satellite and ground precipitation data using Random Forest for spatial prediction, residual modeling for bias correction, and quantile mapping for adjustment, ensuring accurate estimates across temporal scales and regions.
Author: Jonnathan Augusto Landi Bermeo [aut, cre, cph]
,
Alex Aviles [aut] ,
Dario Zhina [aut] ,
Marco Mogro [aut] ,
Anthony Guaman [aut]
Maintainer: Jonnathan Augusto Landi Bermeo <jonnathan.landi@outlook.com>
Diff between RFplus versions 1.3-0 dated 2025-02-24 and 1.4-0 dated 2025-03-10
DESCRIPTION | 16 +-- MD5 | 22 ++-- NEWS.md | 24 ++++ R/RFplus.R | 226 ++++++++++++++++++++++++++++--------------- README.md | 80 ++++----------- inst/NEWS | 13 ++ inst/doc/RFplus.R | 62 ++++++----- inst/doc/RFplus.Rmd | 93 ++++++++++------- inst/doc/RFplus.html | 220 ++++++++++++++++++++++++----------------- man/RFplus.Rd | 81 +++++++++++---- tests/testthat/test-RFplus.R | 12 +- vignettes/RFplus.Rmd | 93 ++++++++++------- 12 files changed, 574 insertions(+), 368 deletions(-)
Title: Privacy-Preserving Distributed Algorithms
Description: A collection of privacy-preserving distributed algorithms for conducting multi-site data analyses. The regression analyses can be linear regression for continuous outcome, logistic regression for binary outcome, Cox proportional hazard regression for time-to event outcome, Poisson regression for count outcome, or multi-categorical regression for nominal or ordinal outcome. The PDA algorithm runs on a lead site and only requires summary statistics from collaborating sites, with one or few iterations. The package can be used together with the online system (<https://pda-ota.pdamethods.org/>) for safe and convenient collaboration. For more information, please visit our software websites: <https://github.com/Penncil/pda>, and <https://pdamethods.org/>.
Author: Chongliang Luo [aut],
Rui Duan [aut],
Mackenzie Edmondson [aut],
Jiayi Tong [aut],
Xiaokang Liu [aut],
Kenneth Locke [aut],
Yiwen Lu [cre],
Yong Chen [aut],
Penn Computing Inference Learning lab [cph]
Maintainer: Yiwen Lu <yiwenlu@sas.upenn.edu>
Diff between pda versions 1.2.7 dated 2024-03-04 and 1.2.8 dated 2025-03-10
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NEWS.md | 8 ++++++++ build/partial.rdb |binary 4 files changed, 18 insertions(+), 10 deletions(-)
Title: ILO Open Data via Ilostat Bulk Download Facility
Description: Tools to download data from the [ilostat](<https://ilostat.ilo.org>) database
together with search and
manipulation utilities.
Author: David Bescond [aut, cre] ,
Mabelin Villarreal-Fuentes [ctb]
,
ILO Department of Statistics [cph, fnd]
Maintainer: David Bescond <bescond@ilo.org>
Diff between Rilostat versions 2.2.0 dated 2024-09-03 and 2.3.1 dated 2025-03-10
DESCRIPTION | 12 ++++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/Rilostat.R | 4 +++- R/dataexplorer.R | 38 ++++++++++---------------------------- R/get_ilostat.R | 4 ++-- R/get_ilostat_dic.R | 4 ++-- R/get_ilostat_toc.R | 2 +- R/label_ilostat.R | 16 ++++++++++++++-- README.md | 2 +- man/dataexplorer.Rd | 28 +--------------------------- man/label_ilostat.Rd | 11 +++++++++++ 13 files changed, 69 insertions(+), 82 deletions(-)
Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 25.3.1 dated 2025-03-05 and 25.3.2 dated 2025-03-10
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 4 R/redcap_wider.R | 57 ++++++-- inst/doc/REDCapCAST.html | 330 +++++++++++++++++++++++------------------------ man/redcap_wider.Rd | 23 +++ 6 files changed, 248 insertions(+), 182 deletions(-)
Title: Client for 'LaminDB'
Description: Interact with 'LaminDB'. 'LaminDB' is an open-source data
framework for biology. This package allows you to query and download
data from 'LaminDB' instances.
Author: Robrecht Cannoodt [aut, cre] ,
Luke Zappia [aut] ,
Data Intuitive [aut],
Lamin Labs [aut, cph]
Maintainer: Robrecht Cannoodt <robrecht@data-intuitive.com>
Diff between laminr versions 0.4.1 dated 2025-01-27 and 1.0.0 dated 2025-03-10
laminr-0.4.1/laminr/R/Field.R |only laminr-0.4.1/laminr/R/Instance.R |only laminr-0.4.1/laminr/R/InstanceAPI.R |only laminr-0.4.1/laminr/R/InstanceSettings.R |only laminr-0.4.1/laminr/R/Module.R |only laminr-0.4.1/laminr/R/Record.R |only laminr-0.4.1/laminr/R/RelatedRecords.R |only laminr-0.4.1/laminr/R/UserSettings.R |only laminr-0.4.1/laminr/R/connect.R |only laminr-0.4.1/laminr/R/core_loaders.R |only laminr-0.4.1/laminr/R/printing.R |only laminr-0.4.1/laminr/R/settings_load.R |only laminr-0.4.1/laminr/R/settings_store.R |only laminr-0.4.1/laminr/R/vignette-utils.R |only laminr-0.4.1/laminr/inst/doc/architecture.R |only laminr-0.4.1/laminr/inst/doc/architecture.html |only laminr-0.4.1/laminr/inst/doc/architecture.qmd |only laminr-0.4.1/laminr/inst/doc/development.html |only laminr-0.4.1/laminr/inst/doc/development.qmd |only laminr-0.4.1/laminr/man/Field.Rd |only laminr-0.4.1/laminr/man/Instance.Rd |only laminr-0.4.1/laminr/man/Module.Rd |only laminr-0.4.1/laminr/man/Record.Rd |only laminr-0.4.1/laminr/man/Registry.Rd |only laminr-0.4.1/laminr/man/RelatedRecords.Rd |only laminr-0.4.1/laminr/man/connect.Rd |only laminr-0.4.1/laminr/tests/testthat/helper-skip_if_not_logged_in.R |only laminr-0.4.1/laminr/tests/testthat/test-Artifact.R |only laminr-0.4.1/laminr/tests/testthat/test-RelatedRecords.R |only laminr-0.4.1/laminr/tests/testthat/test-connect.R |only laminr-0.4.1/laminr/tests/testthat/test-core_loaders.R |only laminr-0.4.1/laminr/tests/testthat/test-instance_api.R |only laminr-0.4.1/laminr/vignettes/architecture.qmd |only laminr-0.4.1/laminr/vignettes/concepts_features.Rmd |only laminr-0.4.1/laminr/vignettes/development.qmd |only laminr-0.4.1/laminr/vignettes/module_bionty.Rmd |only laminr-0.4.1/laminr/vignettes/module_core.Rmd |only laminr-0.4.1/laminr/vignettes/module_wetlab.Rmd |only laminr-1.0.0/laminr/DESCRIPTION | 14 laminr-1.0.0/laminr/MD5 | 109 - laminr-1.0.0/laminr/NAMESPACE | 48 laminr-1.0.0/laminr/R/Artifact.R | 199 +-- laminr-1.0.0/laminr/R/CallableWrappedPythonObject.R |only laminr-1.0.0/laminr/R/Collection.R |only laminr-1.0.0/laminr/R/Registry.R | 568 ---------- laminr-1.0.0/laminr/R/Transform.R |only laminr-1.0.0/laminr/R/WrappedPythonObject.R |only laminr-1.0.0/laminr/R/checks.R |only laminr-1.0.0/laminr/R/file_loaders.R |only laminr-1.0.0/laminr/R/file_openers.R |only laminr-1.0.0/laminr/R/help.R |only laminr-1.0.0/laminr/R/import.R |only laminr-1.0.0/laminr/R/install.R | 62 - laminr-1.0.0/laminr/R/lamin_cli.R |only laminr-1.0.0/laminr/R/lamindb.R |only laminr-1.0.0/laminr/R/laminr-package.R | 10 laminr-1.0.0/laminr/R/reticulate-utils.R |only laminr-1.0.0/laminr/R/ui.R |only laminr-1.0.0/laminr/R/unwrap-python.R |only laminr-1.0.0/laminr/R/utils.R | 179 +-- laminr-1.0.0/laminr/R/view.R |only laminr-1.0.0/laminr/R/wrap-python.R |only laminr-1.0.0/laminr/README.md | 34 laminr-1.0.0/laminr/build/vignette.rds |binary laminr-1.0.0/laminr/inst/doc/welcome.html |only laminr-1.0.0/laminr/inst/doc/welcome.qmd |only laminr-1.0.0/laminr/man/get_current_lamin_instance.Rd |only laminr-1.0.0/laminr/man/get_current_lamin_user.Rd |only laminr-1.0.0/laminr/man/import_module.Rd |only laminr-1.0.0/laminr/man/install_lamindb.Rd | 5 laminr-1.0.0/laminr/man/lamin_connect.Rd | 16 laminr-1.0.0/laminr/man/lamin_delete.Rd |only laminr-1.0.0/laminr/man/lamin_disconnect.Rd |only laminr-1.0.0/laminr/man/lamin_init.Rd |only laminr-1.0.0/laminr/man/lamin_login.Rd | 20 laminr-1.0.0/laminr/man/lamin_logout.Rd |only laminr-1.0.0/laminr/man/lamin_save.Rd |only laminr-1.0.0/laminr/tests/testthat.R | 32 laminr-1.0.0/laminr/tests/testthat/setup.R |only laminr-1.0.0/laminr/tests/testthat/test-Registry.R | 67 - laminr-1.0.0/laminr/tests/testthat/test-checks.R |only laminr-1.0.0/laminr/tests/testthat/test-file_loaders.R |only laminr-1.0.0/laminr/tests/testthat/test-import.R |only laminr-1.0.0/laminr/tests/testthat/test-install.R |only laminr-1.0.0/laminr/tests/testthat/test-reticulate-utils.R |only laminr-1.0.0/laminr/tests/testthat/test-ui.R |only laminr-1.0.0/laminr/tests/testthat/test-unwrap-python.R |only laminr-1.0.0/laminr/tests/testthat/test-utils.R | 26 laminr-1.0.0/laminr/tests/testthat/test-wrap-python.R |only laminr-1.0.0/laminr/vignettes/introduction.Rmd |only laminr-1.0.0/laminr/vignettes/laminr.Rmd | 76 - laminr-1.0.0/laminr/vignettes/setup.Rmd | 2 laminr-1.0.0/laminr/vignettes/welcome.qmd |only 93 files changed, 444 insertions(+), 1023 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the
only such package with read and write support for TIFF files with
floating point (real-numbered) pixels, and the only package that can
correctly import TIFF files that were saved from 'ImageJ' and write
TIFF files than can be correctly read by 'ImageJ'
<https://imagej.net/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] ,
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] ,
Jeroen Ooms [rev, ctb] ,
Jon Clayden [rev]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 3.0.0 dated 2025-03-01 and 3.1.0 dated 2025-03-10
ijtiff-3.0.0/ijtiff/tests/testthat/_snaps/io.md |only ijtiff-3.0.0/ijtiff/tests/testthat/_snaps/linescan_to_stack-examples.md |only ijtiff-3.0.0/ijtiff/tests/testthat/_snaps/read_tags-examples.md |only ijtiff-3.1.0/ijtiff/DESCRIPTION | 15 - ijtiff-3.1.0/ijtiff/MD5 | 83 +++---- ijtiff-3.1.0/ijtiff/NAMESPACE | 4 ijtiff-3.1.0/ijtiff/NEWS.md | 13 + ijtiff-3.1.0/ijtiff/R/graphics.R | 115 +++++++++- ijtiff-3.1.0/ijtiff/R/ijtiff.R | 1 ijtiff-3.1.0/ijtiff/R/print.R | 13 - ijtiff-3.1.0/ijtiff/R/read.R | 32 +- ijtiff-3.1.0/ijtiff/R/reexports.R |only ijtiff-3.1.0/ijtiff/R/utils.R | 65 +---- ijtiff-3.1.0/ijtiff/R/write.R | 47 ++-- ijtiff-3.1.0/ijtiff/README.md | 1 ijtiff-3.1.0/ijtiff/build/vignette.rds |binary ijtiff-3.1.0/ijtiff/inst/WORDLIST | 3 ijtiff-3.1.0/ijtiff/inst/doc/reading-and-writing-images.R | 22 - ijtiff-3.1.0/ijtiff/inst/doc/reading-and-writing-images.Rmd | 22 - ijtiff-3.1.0/ijtiff/inst/doc/reading-and-writing-images.html | 57 ++-- ijtiff-3.1.0/ijtiff/inst/doc/text-images.html | 4 ijtiff-3.1.0/ijtiff/inst/doc/the-imagej-problem.R | 19 - ijtiff-3.1.0/ijtiff/inst/doc/the-imagej-problem.Rmd | 19 - ijtiff-3.1.0/ijtiff/inst/doc/the-imagej-problem.html | 10 ijtiff-3.1.0/ijtiff/inst/doc/tiff-tags.R |only ijtiff-3.1.0/ijtiff/inst/doc/tiff-tags.Rmd |only ijtiff-3.1.0/ijtiff/inst/doc/tiff-tags.html |only ijtiff-3.1.0/ijtiff/man/as.raster.ijtiff_img.Rd |only ijtiff-3.1.0/ijtiff/man/display.Rd | 5 ijtiff-3.1.0/ijtiff/man/reexports.Rd |only ijtiff-3.1.0/ijtiff/man/write_tif.Rd | 61 +++-- ijtiff-3.1.0/ijtiff/src/common.c | 74 ++++-- ijtiff-3.1.0/ijtiff/src/common.h | 6 ijtiff-3.1.0/ijtiff/src/init.c | 5 ijtiff-3.1.0/ijtiff/src/read.c | 81 +++++-- ijtiff-3.1.0/ijtiff/src/tags.c | 83 +++++-- ijtiff-3.1.0/ijtiff/tests/testthat/_snaps/print.md | 7 ijtiff-3.1.0/ijtiff/tests/testthat/test-errors.R |only ijtiff-3.1.0/ijtiff/tests/testthat/test-graphics.R |only ijtiff-3.1.0/ijtiff/tests/testthat/test-invalid-tif.R |only ijtiff-3.1.0/ijtiff/tests/testthat/test-io.R | 54 ---- ijtiff-3.1.0/ijtiff/tests/testthat/test-linescan_to_stack-examples.R | 10 ijtiff-3.1.0/ijtiff/tests/testthat/test-read_tags-examples.R | 5 ijtiff-3.1.0/ijtiff/tests/testthat/test-tag-datetime.R | 4 ijtiff-3.1.0/ijtiff/tests/testthat/test-tag-handling.R | 7 ijtiff-3.1.0/ijtiff/tests/testthat/test-utils.R | 13 - ijtiff-3.1.0/ijtiff/vignettes/reading-and-writing-images.Rmd | 22 - ijtiff-3.1.0/ijtiff/vignettes/the-imagej-problem.Rmd | 19 - ijtiff-3.1.0/ijtiff/vignettes/tiff-tags.Rmd |only 49 files changed, 618 insertions(+), 383 deletions(-)
Title: Analysis and Visualization Tools for Genetic Barcode Data
Description: Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Author: Lars Thielecke [aut, cre]
Maintainer: Lars Thielecke <lars.thielecke@tu-dresden.de>
Diff between genBaRcode versions 1.2.7 dated 2023-12-11 and 1.2.8 dated 2025-03-10
DESCRIPTION | 14 - MD5 | 16 - R/plot_functions.R | 2 build/vignette.rds |binary inst/doc/genBaRcode_GUI_Vignette.R | 14 - inst/doc/genBaRcode_GUI_Vignette.pdf |binary inst/doc/genBaRcode_Vignette.R | 312 +++++++++++++++++------------------ inst/doc/genBaRcode_Vignette.pdf |binary man/plotReadFrequencies.Rd | 2 9 files changed, 181 insertions(+), 179 deletions(-)
Title: Poisson Lognormal Models
Description: The Poisson-lognormal model and variants (Chiquet,
Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be
used for a variety of multivariate problems when count data are at
play, including principal component analysis for count data,
discriminant analysis, model-based clustering and network inference.
Implements variational algorithms to fit such models accompanied with
a set of functions for visualization and diagnostic.
Author: Julien Chiquet [aut, cre] ,
Mahendra Mariadassou [aut] ,
Stephane Robin [aut],
Francois Gindraud [aut],
Julie Aubert [ctb],
Bastien Batardiere [ctb],
Giovanni Poggiato [ctb],
Cole Trapnell [ctb],
Maddy Duran [ctb]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between PLNmodels versions 1.2.0 dated 2024-03-05 and 1.2.1 dated 2025-03-10
DESCRIPTION | 62 +-- MD5 | 143 ++++---- NAMESPACE | 3 NEWS.md | 7 R/PLNLDAfit-S3methods.R | 4 R/PLNLDAfit-class.R | 4 R/PLNPCAfamily-class.R | 2 R/PLNPCAfit-S3methods.R | 4 R/PLNPCAfit-class.R | 4 R/PLNfamily-class.R | 6 R/PLNfit-S3methods.R | 16 R/PLNfit-class.R | 99 +---- R/PLNmixturefamily-class.R | 4 R/PLNmixturefit-S3methods.R | 4 R/PLNmixturefit-class.R | 8 R/PLNnetworkfamily-class.R | 8 R/PLNnetworkfit-class.R | 1 R/RcppExports.R | 4 R/ZIPLN.R | 6 R/ZIPLNfit-class.R | 20 - R/ZIPLNnetwork.R | 4 R/barents.R | 2 R/import_utils.R | 72 ++-- R/plot_utils.R | 1 R/utils-zipln.R | 4 R/utils.R | 9 R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Import_data.R | 62 +-- inst/doc/Import_data.html | 11 inst/doc/PLN.html | 65 +-- inst/doc/PLNLDA.html | 611 +++++++++++++++++------------------ inst/doc/PLNPCA.R | 6 inst/doc/PLNPCA.html | 220 ++++++------ inst/doc/PLNmixture.R | 6 inst/doc/PLNmixture.html | 63 +-- inst/doc/PLNnetwork.R | 6 inst/doc/PLNnetwork.html | 246 ++++++-------- inst/doc/Trichoptera.html | 15 man/Networkfamily.Rd | 6 man/PLNLDAfit.Rd | 4 man/PLNPCAfamily.Rd | 2 man/PLNPCAfit.Rd | 4 man/PLNfamily.Rd | 2 man/PLNfit.Rd | 2 man/PLNfit_fixedcov.Rd | 50 -- man/PLNmixturefamily.Rd | 4 man/PLNmixturefit.Rd | 8 man/PLNnetworkfit.Rd | 2 man/ZIPLNfit.Rd | 2 man/barents.Rd | 2 man/plot.PLNLDAfit.Rd | 4 man/plot.PLNPCAfit.Rd | 4 man/plot.PLNmixturefit.Rd | 4 man/prepare_data.Rd | 10 man/standard_error.Rd | 10 src/RcppExports.cpp | 17 src/nlopt_wrapper.cpp | 37 +- src/nlopt_wrapper.h | 4 src/optim_diag_cov.cpp | 42 -- src/optim_fixed_cov.cpp | 24 - src/optim_full_cov.cpp | 68 +-- src/optim_genet_cov.cpp | 14 src/optim_rank_cov.cpp | 46 -- src/optim_spherical.cpp | 45 -- src/optim_zi-pln.cpp | 5 src/utils-R.cpp |only tests/testthat/Rplots.pdf |binary tests/testthat/test-import-utils.R | 60 ++- tests/testthat/test-pln.R | 2 tests/testthat/test-standard-error.R | 45 ++ tests/testthat/test-ziplnfit.R | 2 73 files changed, 1118 insertions(+), 1227 deletions(-)
Title: Fast Algorithms for Generalized Principal Component Analysis
Description: Implements fast, scalable optimization algorithms for
fitting generalized principal components analysis (GLM-PCA) models,
as described in "A Generalization of Principal Components
Analysis to the Exponential Family" Collins M, Dasgupta S, Schapire RE
(2002, ISBN:9780262271738), and subsequently "Feature Selection
and Dimension Reduction for Single-Cell RNA-Seq Based on a Multinomial
Model" Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019)
<doi:10.1186/s13059-019-1861-6>.
Author: Eric Weine [aut, cre],
Peter Carbonetto [aut],
Matthew Stephens [aut]
Maintainer: Eric Weine <ericweine15@gmail.com>
Diff between fastglmpca versions 0.1-103 dated 2024-01-31 and 0.1-107 dated 2025-03-10
DESCRIPTION | 14 ++-- MD5 | 26 +++---- NAMESPACE | 3 NEWS.md | 6 + R/argument_checking.R | 2 R/fit.R | 117 ++++++++++++++++++++++++++++++---- R/init.R | 13 +-- R/simulate_data.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro_fastglmpca.html | 43 +++++------- man/fit_glmpca_pois.Rd | 27 ++++++- man/generate_glmpca_data_pois.Rd | 6 - tests/testthat/test_fit_glmpca_pois.R | 65 ++++++++++++++++++ 14 files changed, 251 insertions(+), 77 deletions(-)
Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes: 1,a robust multivariate meta-analysis of continuous or binary outcomes; 2, a bivariate Egger's test for detecting small study effects; 3, Galaxy Plot: A New Visualization Tool of Bivariate Meta-Analysis Studies; 4, a bivariate T&F method accounting for publication bias in bivariate meta-analysis, based on symmetry of the galaxy plot. Hong C. et al(2020) <doi:10.1093/aje/kwz286>, Chongliang L. et al(2020) <doi:10.1101/2020.07.27.20161562>.
Author: Chuan Hong [aut],
Chongliang Luo [aut],
Jiayi Tong [aut],
Rui Duan [ctb],
Haitao Chu [ctb],
Yulun Liu [ctb],
Yuqing Lei [cre],
Yong Chen [aut]
Maintainer: Yuqing Lei <lyqlei@pennmedicine.upenn.edu>
Diff between xmeta versions 1.3.2 dated 2023-09-06 and 1.3.3 dated 2025-03-10
DESCRIPTION | 16 ++++++++-------- MD5 | 2 +- 2 files changed, 9 insertions(+), 9 deletions(-)
Title: Proportional Apportionment
Description: Calculate seat apportionment for legislative bodies with
various methods. The algorithms include divisor or highest averages methods
(e.g. Jefferson, Webster or Adams), largest remainder methods and
biproportional apportionment.
Gaffke, N. & Pukelsheim, F. (2008) <doi:10.1016/j.mathsocsci.2008.01.004>
Oelbermann, K. F. (2016) <doi:10.1016/j.mathsocsci.2016.02.003>.
Author: Flavio Poletti [aut, cre, cph]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between proporz versions 1.5.0 dated 2024-04-03 and 1.5.1 dated 2025-03-10
proporz-1.5.0/proporz/R/divisor.R |only proporz-1.5.0/proporz/R/quota.R |only proporz-1.5.1/proporz/DESCRIPTION | 11 proporz-1.5.1/proporz/MD5 | 106 + proporz-1.5.1/proporz/NAMESPACE | 4 proporz-1.5.1/proporz/NEWS.md | 13 proporz-1.5.1/proporz/R/S3.R | 53 proporz-1.5.1/proporz/R/biproportional-check.R | 172 ++- proporz-1.5.1/proporz/R/biproportional-divisors.R | 24 proporz-1.5.1/proporz/R/biproportional-lower.R |only proporz-1.5.1/proporz/R/biproportional-upper.R |only proporz-1.5.1/proporz/R/biproportional-wto.R | 84 + proporz-1.5.1/proporz/R/biproportional.R | 535 +--------- proporz-1.5.1/proporz/R/divisor-check.R | 27 proporz-1.5.1/proporz/R/divisor_methods.R |only proporz-1.5.1/proporz/R/matrix.R |only proporz-1.5.1/proporz/R/proporz.R | 6 proporz-1.5.1/proporz/R/quorum.R | 139 +- proporz-1.5.1/proporz/R/quota_methods.R |only proporz-1.5.1/proporz/R/round.R | 2 proporz-1.5.1/proporz/R/shinyapp.R | 4 proporz-1.5.1/proporz/R/utils.R | 134 -- proporz-1.5.1/proporz/README.md | 17 proporz-1.5.1/proporz/build/vignette.rds |binary proporz-1.5.1/proporz/inst/bazi.R |only proporz-1.5.1/proporz/inst/doc/apportionment_scenarios.html | 4 proporz-1.5.1/proporz/inst/doc/modifying_biproporz.R |only proporz-1.5.1/proporz/inst/doc/modifying_biproporz.Rmd |only proporz-1.5.1/proporz/inst/doc/modifying_biproporz.html |only proporz-1.5.1/proporz/inst/test-bazi_biproportional_examples.R |only proporz-1.5.1/proporz/inst/test-read_bazi_data.R |only proporz-1.5.1/proporz/inst/test-read_bazi_data_coverage.R |only proporz-1.5.1/proporz/man/apply_quorum.Rd |only proporz-1.5.1/proporz/man/biproporz.Rd | 20 proporz-1.5.1/proporz/man/district_winner_matrix.Rd |only proporz-1.5.1/proporz/man/divide_votes_matrix.Rd | 2 proporz-1.5.1/proporz/man/divisor_methods.Rd | 24 proporz-1.5.1/proporz/man/find_divisor.Rd | 4 proporz-1.5.1/proporz/man/find_matrix_divisors.Rd | 2 proporz-1.5.1/proporz/man/get_divisors.Rd | 16 proporz-1.5.1/proporz/man/highest_averages_method.Rd | 4 proporz-1.5.1/proporz/man/largest_remainder_method.Rd | 6 proporz-1.5.1/proporz/man/lower_apportionment.Rd | 28 proporz-1.5.1/proporz/man/pivot_to_matrix.Rd | 2 proporz-1.5.1/proporz/man/proporz.Rd | 16 proporz-1.5.1/proporz/man/pukelsheim.Rd | 5 proporz-1.5.1/proporz/man/quorum_functions.Rd | 18 proporz-1.5.1/proporz/man/reached_quorum_any_district.Rd | 12 proporz-1.5.1/proporz/man/reached_quorum_total.Rd | 15 proporz-1.5.1/proporz/man/reached_quorums.Rd | 7 proporz-1.5.1/proporz/man/upper_apportionment.Rd | 35 proporz-1.5.1/proporz/man/weight_list_votes.Rd | 15 proporz-1.5.1/proporz/tests/testthat/test-biproportional-data.R | 30 proporz-1.5.1/proporz/tests/testthat/test-biproportional-errors.R |only proporz-1.5.1/proporz/tests/testthat/test-biproportional-wto.R | 48 proporz-1.5.1/proporz/tests/testthat/test-biproportional.R | 344 ------ proporz-1.5.1/proporz/tests/testthat/test-divisor.R | 93 - proporz-1.5.1/proporz/tests/testthat/test-proporz-parameters.R |only proporz-1.5.1/proporz/tests/testthat/test-proporz.R | 93 - proporz-1.5.1/proporz/tests/testthat/test-quorum.R |only proporz-1.5.1/proporz/tests/testthat/test-quota.R | 32 proporz-1.5.1/proporz/tests/testthat/test-round.R | 6 proporz-1.5.1/proporz/tests/testthat/test-utils.R | 87 + proporz-1.5.1/proporz/vignettes/modifying_biproporz.Rmd |only 64 files changed, 948 insertions(+), 1351 deletions(-)
Title: Extension to 'ggplot2' for Plotting Stats
Description: Provides new statistics, new geometries and new positions for
'ggplot2' and a suite of functions to facilitate the creation of
statistical plots.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between ggstats versions 0.8.0 dated 2025-01-07 and 0.9.0 dated 2025-03-10
DESCRIPTION | 16 MD5 | 42 +- NAMESPACE | 2 NEWS.md | 25 + R/deprecated.R |only R/ggcoef_model.R | 749 ++++++++++++++----------------------- R/gglikert.R | 4 R/stat_prop.R | 4 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/geom_diverging.R | 10 inst/doc/geom_diverging.Rmd | 10 inst/doc/geom_diverging.html | 28 - inst/doc/ggcoef_model.R | 47 -- inst/doc/ggcoef_model.Rmd | 64 +-- inst/doc/ggcoef_model.html | 186 ++++----- inst/doc/gglikert.html | 2 man/ggcoef_model.Rd | 164 +++----- man/ggcoef_multicomponents.Rd |only tests/testthat/test-ggcoef_model.R | 176 +------- tests/testthat/test-stat_prop.R | 42 ++ vignettes/geom_diverging.Rmd | 10 vignettes/ggcoef_model.Rmd | 64 +-- 23 files changed, 725 insertions(+), 921 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R.
It further includes fast functions for common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It is well integrated with base R classes, 'dplyr'/' [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
Alina Cherkas [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999- [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.0.19 dated 2025-01-09 and 2.1.0 dated 2025-03-10
DESCRIPTION | 15 + MD5 | 162 +++++++++---------- NAMESPACE | 28 +-- NEWS.md | 49 +++++ R/GRP.R | 42 ++--- R/RcppExports.R | 4 R/fslice.R |only R/global_macros.R | 31 +-- R/indexing.R | 6 R/join.R | 71 ++++---- R/list_functions.R | 8 R/my_RcppExports.R | 4 R/pivot.R | 10 - R/psmat.R | 20 +- R/pwcor_pwcov_pwnobs.R | 8 R/select_replace_add_vars.R | 16 - R/small_helper.R | 39 ++-- R/zzz.R | 2 build/vignette.rds |binary inst/doc/collapse_documentation.html | 4 inst/doc/collapse_for_tidyverse_users.Rmd | 6 inst/doc/collapse_for_tidyverse_users.html | 28 +-- inst/doc/collapse_object_handling.Rmd | 34 ++-- inst/doc/collapse_object_handling.html | 206 +++++++++++------------- inst/doc/developing_with_collapse.Rmd | 2 inst/doc/developing_with_collapse.html | 4 man/GRP.Rd | 12 - man/TRA.Rd | 8 man/collapse-documentation.Rd | 6 man/collapse-options.Rd | 2 man/collapse-renamed.Rd | 52 +++--- man/fast-data-manipulation.Rd | 26 +-- man/fast-grouping-ordering.Rd | 10 - man/fnth_fmedian.Rd | 14 - man/fquantile.Rd | 60 ++++--- man/fslice.Rd |only man/funique.Rd | 2 man/group.Rd | 13 - man/join.Rd | 11 - man/pivot.Rd | 2 man/psmat.Rd | 10 - man/qF.Rd | 4 man/radixorder.Rd | 2 man/roworder.Rd | 4 src/ExportSymbols.c | 4 src/RcppExports.cpp | 7 src/TRA.c | 46 +++-- src/base_radixsort.c | 12 - src/base_radixsort.h | 74 -------- src/collapse_c.h | 17 +- src/collapse_cpp.h | 2 src/data.table.h | 30 --- src/data.table_init.c | 16 + src/data.table_rbindlist.c | 22 +- src/data.table_subset.c | 46 ++--- src/data.table_utils.c | 11 - src/fcumsum.c | 4 src/ffirst.c | 17 +- src/flast.c | 20 +- src/fmean.c | 4 src/fmin_fmax.c | 8 src/fmode.c | 43 ++--- src/fndistinct.c | 38 ++-- src/fnobs.c | 21 +- src/fnth_fmedian_fquantile.c | 242 ++++++++++------------------- src/fprod.c | 6 src/fsum.c | 2 src/gsplit.c | 36 ++-- src/handle_attributes.c | 12 - src/internal |only src/join.c | 4 src/kit.h | 83 --------- src/kit_dup.c | 60 +++---- src/match.c | 33 +-- src/pivot.c | 21 +- src/programming.c | 47 +---- src/psmat.cpp | 19 +- src/small_helper.c | 87 +++++++++- tests/testthat/test-fquantile.R | 10 + tests/testthat/test-fslice.R |only tests/testthat/test-miscellaneous-issues.R | 5 vignettes/collapse_for_tidyverse_users.Rmd | 6 vignettes/collapse_object_handling.Rmd | 34 ++-- vignettes/developing_with_collapse.Rmd | 2 84 files changed, 1073 insertions(+), 1115 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] ,
Aaron Wolen [aut] ,
Maelle Salmon [aut] ,
Daniel Possenriede [aut] ,
rOpenSci [fnd]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between vcr versions 1.6.0 dated 2024-07-23 and 1.7.0 dated 2025-03-10
DESCRIPTION | 14 ++++----- MD5 | 32 ++++++++++---------- NEWS.md | 13 +++++++- build/vignette.rds |binary inst/doc/cassette-manual-editing.html | 5 +-- inst/doc/configuration.R | 12 +++---- inst/doc/configuration.html | 4 +- inst/doc/debugging.html | 4 +- inst/doc/internals.html | 5 +-- inst/doc/lightswitch.html | 4 +- inst/doc/record-modes.html | 4 +- inst/doc/request_matching.R | 52 +++++++++++++++++----------------- inst/doc/request_matching.html | 4 +- inst/doc/vcr.R | 52 +++++++++++++++++----------------- inst/doc/vcr.html | 4 +- inst/doc/write-to-disk.html | 10 +++--- man/vcr-package.Rd | 4 +- 17 files changed, 117 insertions(+), 106 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness. We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans [aut, cre],
Alejandro Kantor [aut],
Dustin Tingley [aut]
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.9.3 dated 2023-11-12 and 0.9.4 dated 2025-03-10
politeness-0.9.3/politeness/R/posTools.R |only politeness-0.9.3/politeness/tests/testthat/test-findPoliteTexts.R |only politeness-0.9.3/politeness/tests/testthat/test-politenessPlot.R |only politeness-0.9.4/politeness/DESCRIPTION | 24 - politeness-0.9.4/politeness/MD5 | 58 +- politeness-0.9.4/politeness/NAMESPACE | 5 politeness-0.9.4/politeness/R/exampleTexts.R |only politeness-0.9.4/politeness/R/featurePlot.R |only politeness-0.9.4/politeness/R/findPoliteTexts.R | 76 --- politeness-0.9.4/politeness/R/getTokenSets.R | 3 politeness-0.9.4/politeness/R/modelPlot.R |only politeness-0.9.4/politeness/R/politeness.R | 69 +-- politeness-0.9.4/politeness/R/politenessModel.R | 8 politeness-0.9.4/politeness/R/politenessPlot.R | 219 ---------- politeness-0.9.4/politeness/R/politenessProjection.R | 122 ----- politeness-0.9.4/politeness/R/receptiveness.R | 6 politeness-0.9.4/politeness/R/spacyParser.R |only politeness-0.9.4/politeness/R/textTools.R | 8 politeness-0.9.4/politeness/R/trainModel.R |only politeness-0.9.4/politeness/README.md | 2 politeness-0.9.4/politeness/build/vignette.rds |binary politeness-0.9.4/politeness/inst/doc/politeness.R | 40 - politeness-0.9.4/politeness/inst/doc/politeness.Rmd | 58 +- politeness-0.9.4/politeness/inst/doc/politeness.html | 132 +++--- politeness-0.9.4/politeness/man/exampleTexts.Rd |only politeness-0.9.4/politeness/man/featurePlot.Rd |only politeness-0.9.4/politeness/man/findPoliteTexts.Rd | 37 - politeness-0.9.4/politeness/man/modelPlot.Rd |only politeness-0.9.4/politeness/man/politenessModel.Rd | 2 politeness-0.9.4/politeness/man/politenessPlot.Rd | 56 -- politeness-0.9.4/politeness/man/politenessProjection.Rd | 28 - politeness-0.9.4/politeness/man/receptiveness.Rd | 4 politeness-0.9.4/politeness/man/spacyParser.Rd | 2 politeness-0.9.4/politeness/man/trainModel.Rd |only politeness-0.9.4/politeness/tests/testthat/test-exampleTexts.R |only politeness-0.9.4/politeness/tests/testthat/test-featurePlot.R |only politeness-0.9.4/politeness/vignettes/politeness.Rmd | 58 +- 37 files changed, 286 insertions(+), 731 deletions(-)
Title: Penalized Regression Calibration (PRC) for the Dynamic
Prediction of Survival
Description: Computes penalized regression calibration (PRC), a
statistical method for the dynamic prediction of survival when many
longitudinal predictors are available. PRC is described in Signorelli
(2024) <doi:10.48550/arXiv.2309.15600> and in Signorelli et al. (2021)
<doi:10.1002/sim.9178>.
Author: Mirko Signorelli [aut, cre, cph]
,
Pietro Spitali [ctb],
Roula Tsonaka [ctb],
Barbara Vreede [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 2.2.3 dated 2025-02-07 and 2.2.4 dated 2025-03-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/fit_mlpmms.R | 4 ---- R/fit_prcmlpmm.R | 4 ---- R/prepare_longdata.R | 7 +++++++ R/summarize_mlpmms.R | 4 ---- inst/NEWS.md | 7 +++++++ inst/doc/vignette.pdf |binary man/fit_mlpmms.Rd | 4 ---- man/fit_prcmlpmm.Rd | 4 ---- man/summarize_mlpmms.Rd | 4 ---- 11 files changed, 27 insertions(+), 37 deletions(-)
Title: Mixtures of Exponential-Distance Models with Covariates
Description: Implements a model-based clustering method for categorical life-course sequences relying on mixtures of exponential-distance models introduced by Murphy et al. (2021) <doi:10.1111/rssa.12712>. A range of flexible precision parameter settings corresponding to weighted generalisations of the Hamming distance metric are considered, along with the potential inclusion of a noise component. Gating covariates can be supplied in order to relate sequences to baseline characteristics and sampling weights are also accommodated. The models are fitted using the EM algorithm and tools for visualising the results are also provided.
Author: Keefe Murphy [aut, cre] ,
Thomas Brendan Murphy [ctb] ,
Raffaella Piccarreta [ctb] ,
Isobel Claire Gormley [ctb]
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MEDseq versions 1.4.1 dated 2023-12-12 and 1.4.2 dated 2025-03-10
MEDseq-1.4.1/MEDseq/R/MEDseq.R |only MEDseq-1.4.2/MEDseq/DESCRIPTION | 19 - MEDseq-1.4.2/MEDseq/MD5 | 54 +- MEDseq-1.4.2/MEDseq/NAMESPACE | 3 MEDseq-1.4.2/MEDseq/R/Functions.R | 498 +++++++++++++++------------ MEDseq-1.4.2/MEDseq/R/Hidden_Functions.R | 81 ++-- MEDseq-1.4.2/MEDseq/R/MEDseq-package.R |only MEDseq-1.4.2/MEDseq/R/data.R | 38 +- MEDseq-1.4.2/MEDseq/README.md | 6 MEDseq-1.4.2/MEDseq/build/partial.rdb |binary MEDseq-1.4.2/MEDseq/build/vignette.rds |binary MEDseq-1.4.2/MEDseq/inst/NEWS.md | 35 + MEDseq-1.4.2/MEDseq/inst/doc/MEDseq.R | 50 +- MEDseq-1.4.2/MEDseq/inst/doc/MEDseq.Rmd | 6 MEDseq-1.4.2/MEDseq/inst/doc/MEDseq.html | 46 +- MEDseq-1.4.2/MEDseq/man/MEDseq-package.Rd | 34 - MEDseq-1.4.2/MEDseq/man/MEDseq_clustnames.Rd | 15 MEDseq-1.4.2/MEDseq/man/MEDseq_compare.Rd | 18 MEDseq-1.4.2/MEDseq/man/MEDseq_control.Rd | 27 - MEDseq-1.4.2/MEDseq/man/MEDseq_fit.Rd | 16 MEDseq-1.4.2/MEDseq/man/MEDseq_meantime.Rd | 6 MEDseq-1.4.2/MEDseq/man/MEDseq_news.Rd | 4 MEDseq-1.4.2/MEDseq/man/biofam.Rd | 30 - MEDseq-1.4.2/MEDseq/man/dbs.Rd | 2 MEDseq-1.4.2/MEDseq/man/mvad.Rd | 8 MEDseq-1.4.2/MEDseq/man/plot.MEDseq.Rd | 69 ++- MEDseq-1.4.2/MEDseq/man/predict.MEDgating.Rd | 2 MEDseq-1.4.2/MEDseq/man/wKModes.Rd | 2 MEDseq-1.4.2/MEDseq/vignettes/MEDseq.Rmd | 6 29 files changed, 612 insertions(+), 463 deletions(-)
Title: Statistical Methods for Auditing
Description: Provides statistical methods for auditing as implemented in JASP
for Audit (Derks et al., 2021 <doi:10.21105/joss.02733>). First, the package
makes it easy for an auditor to plan a statistical sample, select the sample
from the population, and evaluate the misstatement in the sample compliant
with international auditing standards. Second, the package provides
statistical methods for auditing data, including tests of digit
distributions and repeated values. Finally, the package includes methods for
auditing algorithms on the aspect of fairness and bias. Next to classical
statistical methodology, the package implements Bayesian equivalents of
these methods whose statistical underpinnings are described in Derks et al.
(2021) <doi:10.1111/ijau.12240>, Derks et al. (2024)
<doi:10.2308/AJPT-2021-086>, Derks et al. (2022) <doi:10.31234/osf.io/8nf3e>
Derks et al. (2024) <doi:10.31234/osf.io/tgq5z>, and Derks et al. (2025)
<doi:10.31234/osf.io/b8tu2>.
Author: Koen Derks [aut, cre] ,
Lotte Mensink [ctb] ,
Federica Picogna [ctb]
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.7.2 dated 2024-08-23 and 0.7.3 dated 2025-03-10
DESCRIPTION | 31 +- MD5 | 39 +- NAMESPACE | 3 NEWS.md | 11 R/carrier-data.R | 2 R/compas-data.R | 2 R/evaluation.R | 28 +- R/fairness_selection.R |only R/jfa-methods.R | 426 ++++++++++++++++++++++++++++++- R/model_fairness.R | 62 ++-- data/compas.RData |binary inst/CITATION | 6 man/carrier.Rd | 2 man/compas.Rd | 2 man/fairness_selection.Rd |only man/figures/fairness-tree.pdf |binary man/figures/fairness-tree.png |binary man/jfa-methods.Rd | 8 man/model_fairness.Rd | 37 +- tests/testthat/test-evaluation.R | 2 tests/testthat/test-fairness-selection.R |only tests/testthat/test-model-fairness.R | 2 22 files changed, 569 insertions(+), 94 deletions(-)
Title: Compute Chi-Square Measures with Corrections
Description: Chi-square tests are computed with corrections.
Author: Aurelie Siberchicot [ctb, cre]
,
Eleonore Hellard [aut],
Dominique Pontier [aut],
David Fouchet [aut],
Franck Sauvage [aut]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between Interatrix versions 1.1.4 dated 2024-01-19 and 1.1.5 dated 2025-03-10
Interatrix-1.1.4/Interatrix/inst/doc/Interatrix.Rnw |only Interatrix-1.1.4/Interatrix/inst/doc/Interatrix.pdf |only Interatrix-1.1.4/Interatrix/vignettes/Interatrix.Rnw |only Interatrix-1.1.5/Interatrix/DESCRIPTION | 23 ++++++++++++++----- Interatrix-1.1.5/Interatrix/MD5 | 14 +++++------ Interatrix-1.1.5/Interatrix/README.md | 6 +++- Interatrix-1.1.5/Interatrix/build/vignette.rds |binary Interatrix-1.1.5/Interatrix/inst/doc/Interatrix.html |only Interatrix-1.1.5/Interatrix/inst/doc/Interatrix.qmd |only Interatrix-1.1.5/Interatrix/vignettes/Interatrix.qmd |only Interatrix-1.1.5/Interatrix/vignettes/biblio.bib | 4 +-- 11 files changed, 30 insertions(+), 17 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.4.2 dated 2025-03-07 and 1.4.3 dated 2025-03-10
DESCRIPTION | 10 MD5 | 8 NEWS.md | 4 build/vignette.rds |binary inst/doc/grates.html | 1465 ++++----------------------------------------------- 5 files changed, 131 insertions(+), 1356 deletions(-)
Title: Distribution of the 'BayesX' C++ Sources
Description: 'BayesX' performs Bayesian inference in structured additive regression (STAR) models.
The R package BayesXsrc provides the 'BayesX' command line tool for easy installation.
A convenient R interface is provided in package R2BayesX.
Author: Nikolaus Umlauf [aut, cre] ,
Daniel Adler [aut],
Thomas Kneib [aut],
Stefan Lang [aut],
Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between BayesXsrc versions 3.0-5 dated 2024-03-15 and 3.0-6 dated 2025-03-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/bayesxsrc/mcmc/distribution.cpp | 5 +++++ 3 files changed, 11 insertions(+), 6 deletions(-)
Title: Spatial Analysis in Archaeology from Refitting Fragments (GUI)
Description: A 'Shiny' application to access the functionalities and datasets of the 'archeofrag' package for spatial analysis in archaeology from refitting data. Quick and seamless exploration of archaeological refitting datasets, focusing on physical refits only. Features include: built-in documentation and convenient workflow, plot generation and exports, support of parallel computing when simulating archaeological site formation processes, R code generation to re-execute simulations and ensure reproducibility, code generation for the 'openMOLE' model exploration software. A demonstration of the app is available at <https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/>.
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeofrag.gui versions 0.1.0 dated 2025-01-08 and 1.0.0 dated 2025-03-10
DESCRIPTION | 14 MD5 | 11 NAMESPACE | 1 NEWS.md | 15 R/app_server.R | 1163 +++++++++++++++++++++++++++++++-------- R/app_ui.R | 455 +++++++++++++-- inst/www/timeline-simulation.png |only 7 files changed, 1364 insertions(+), 295 deletions(-)
More information about archeofrag.gui at CRAN
Permanent link
Title: Creating and Significance Testing Language Features for
Visualisation
Description: Implements differential language analysis with statistical tests and offers various language visualization techniques for n-grams and topics. It also supports the 'text' package. For more information, visit <https://r-topics.org/> and <https://www.r-text.org/>.
Author: Leon Ackermann [aut] ,
Zhuojun Gu [aut] ,
Oscar Kjell [aut, cre]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between topics versions 0.21.0 dated 2024-11-23 and 0.50 dated 2025-03-10
topics-0.21.0/topics/R/inferencer.R |only topics-0.21.0/topics/R/main.R |only topics-0.21.0/topics/R/utils.R |only topics-0.21.0/topics/R/wordclouds.R |only topics-0.21.0/topics/tests/do_not_run_for_now |only topics-0.21.0/topics/tests/testthat/test_1_7_topicsGridPlot.R |only topics-0.50/topics/DESCRIPTION | 14 topics-0.50/topics/MD5 | 92 + topics-0.50/topics/NAMESPACE | 27 topics-0.50/topics/NEWS.md | 80 + topics-0.50/topics/R/0_globals.R | 19 topics-0.50/topics/R/1_topicsDtm.R |only topics-0.50/topics/R/2_1_1_topicsModel_Pred.R |only topics-0.50/topics/R/2_1_2_inferencer.R |only topics-0.50/topics/R/2_2_topicsGrams.R |only topics-0.50/topics/R/3_topicTest.R |only topics-0.50/topics/R/4_1_topicsPlot.R |only topics-0.50/topics/R/4_2_wordclouds.R |only topics-0.50/topics/README.md | 95 - topics-0.50/topics/build/vignette.rds |binary topics-0.50/topics/inst/doc/topics.R |only topics-0.50/topics/inst/doc/topics.Rmd |only topics-0.50/topics/inst/doc/topics.html |only topics-0.50/topics/man/figures |only topics-0.50/topics/man/topicsDtm.Rd | 67 - topics-0.50/topics/man/topicsDtmEval.Rd | 6 topics-0.50/topics/man/topicsGrams.Rd | 28 topics-0.50/topics/man/topicsModel.Rd | 68 - topics-0.50/topics/man/topicsPlot.Rd | 102 +- topics-0.50/topics/man/topicsPreds.Rd | 53 - topics-0.50/topics/man/topicsScatterLegend.Rd |only topics-0.50/topics/man/topicsTest.Rd | 64 - topics-0.50/topics/tests/testthat/_snaps |only topics-0.50/topics/tests/testthat/test_1_1_topicsGrams.R | 126 ++ topics-0.50/topics/tests/testthat/test_1_2_topicsDtm.R | 116 +- topics-0.50/topics/tests/testthat/test_1_3_topicsModel.R | 48 topics-0.50/topics/tests/testthat/test_1_4_topicsPreds.R | 46 topics-0.50/topics/tests/testthat/test_1_5_topicsTest.R | 267 ++--- topics-0.50/topics/tests/testthat/test_1_6_topicsPlot.R | 498 +++++++++- topics-0.50/topics/tests/testthat/test_7_training_newdata.R |only topics-0.50/topics/tests/testthat/test_8_handling_NAs.R |only topics-0.50/topics/vignettes/topics.Rmd |only 42 files changed, 1187 insertions(+), 629 deletions(-)
Title: Knowledge Graphs Constructions and Visualizations
Description: Knowledge graphs enable to efficiently visualize and gain insights into large-scale data analysis results, as p-values from multiple studies or embedding data matrices. The usual workflow is a user providing a data frame of association studies results and specifying target nodes, e.g. phenotypes, to visualize. The knowledge graph then shows all the features which are significantly associated with the phenotype, with the edges being proportional to the association scores. As the user adds several target nodes and grouping information about the nodes such as biological pathways, the construction of such graphs soon becomes complex. The 'kgraph' package aims to enable users to easily build such knowledge graphs, and provides two main features: first, to enable building a knowledge graph based on a data frame of concepts relationships, be it p-values or cosine similarities; second, to enable determining an appropriate cut-off on cosine similarities from a complete embedding matrix, to enab [...truncated...]
Author: Thomas Charlon [aut, cre] ,
Hongyi Yuan [ctb] ,
CELEHS [aut] ,
PARSE Health [aut]
Maintainer: Thomas Charlon <charlon@protonmail.com>
Diff between kgraph versions 1.0.1 dated 2025-02-01 and 1.2.0 dated 2025-03-10
kgraph-1.0.1/kgraph/R/svd_pmi.R |only kgraph-1.0.1/kgraph/man/dist_matrix.Rd |only kgraph-1.0.1/kgraph/man/norm_inprod.Rd |only kgraph-1.0.1/kgraph/man/stddev_mean.Rd |only kgraph-1.0.1/kgraph/tests/testthat/test-cosine_simi.R |only kgraph-1.2.0/kgraph/DESCRIPTION | 14 +-- kgraph-1.2.0/kgraph/MD5 | 51 +++++------ kgraph-1.2.0/kgraph/NAMESPACE | 20 ---- kgraph-1.2.0/kgraph/R/df_cuis_pairs.R | 2 kgraph-1.2.0/kgraph/R/df_embeds_dict.R | 2 kgraph-1.2.0/kgraph/R/df_phecode_pairs.R |only kgraph-1.2.0/kgraph/R/df_pval.R | 2 kgraph-1.2.0/kgraph/R/df_pval_dict.R | 2 kgraph-1.2.0/kgraph/R/fit_embeds.R | 6 + kgraph-1.2.0/kgraph/R/m_embeds.R | 2 kgraph-1.2.0/kgraph/R/merge_kgraphs.R | 12 ++ kgraph-1.2.0/kgraph/R/module.R | 4 kgraph-1.2.0/kgraph/R/package.R | 10 -- kgraph-1.2.0/kgraph/R/sparse_encodes.R | 79 +----------------- kgraph-1.2.0/kgraph/build/vignette.rds |binary kgraph-1.2.0/kgraph/data/df_phecode_pairs.rda |only kgraph-1.2.0/kgraph/inst/doc/kgraph.Rmd | 3 kgraph-1.2.0/kgraph/inst/doc/kgraph.html | 42 +++++---- kgraph-1.2.0/kgraph/man/df_cuis_pairs.Rd | 2 kgraph-1.2.0/kgraph/man/df_embeds_dict.Rd | 2 kgraph-1.2.0/kgraph/man/df_phecode_pairs.Rd |only kgraph-1.2.0/kgraph/man/df_pval.Rd | 2 kgraph-1.2.0/kgraph/man/df_pval_dict.Rd | 2 kgraph-1.2.0/kgraph/man/m_embeds.Rd | 2 kgraph-1.2.0/kgraph/vignettes/kgraph.Rmd | 3 kgraph-1.2.0/kgraph/vignettes/kgraph.bib |only 31 files changed, 91 insertions(+), 173 deletions(-)
Title: Stepwise Selection for Large Data Sets
Description: Selecting linear and generalized linear models for large data sets
using modified stepwise procedure and modern selection criteria (like
modifications of Bayesian Information Criterion). Selection can be
performed on data which exceed RAM capacity. Bogdan et al., (2004)
<doi:10.1534/genetics.103.021683>.
Author: Piotr Szulc [aut, cre]
Maintainer: Piotr Szulc <piotr.michal.szulc@gmail.com>
Diff between bigstep versions 1.1.1 dated 2023-05-13 and 1.1.2 dated 2025-03-10
DESCRIPTION | 8 - MD5 | 15 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/bigstep.R | 228 +++++++++++++++++------------------ inst/doc/bigstep.html | 196 +++++++++++++++--------------- tests/testthat/test_backward.R | 5 tests/testthat/test_forward.R | 5 tests/testthat/testthat-problems.rds |only 9 files changed, 232 insertions(+), 229 deletions(-)
Title: Interpretable Machine Learning and Statistical Inference with
Accumulated Local Effects (ALE)
Description: Accumulated Local Effects (ALE) were initially developed as a model-agnostic approach for global explanations of the results of black-box machine learning algorithms. ALE has a key advantage over other approaches like partial dependency plots (PDP) and SHapley Additive exPlanations (SHAP): its values represent a clean functional decomposition of the model. As such, ALE values are not affected by the presence or absence of interactions among variables in a mode. Moreover, its computation is relatively rapid. This package rewrites the original code from the 'ALEPlot' package for calculating ALE data and it completely reimplements the plotting of ALE values. It also extends the original ALE concept to add bootstrap-based confidence intervals and ALE-based statistics that can be used for statistical inference. For more details, see Okoli, Chitu. 2023. “Statistical Inference Using Machine Learning and Classical Techniques Based on Accumulated Local Effects (ALE).” arXiv. <doi:10.48550/ar [...truncated...]
Author: Chitu Okoli [aut, cre] ,
Dan Apley [cph]
Maintainer: Chitu Okoli <Chitu.Okoli@skema.edu>
Diff between ale versions 0.3.0 dated 2024-02-13 and 0.3.1 dated 2025-03-10
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 4 ++++ README.md | 8 ++------ inst/doc/ale-intro.R | 2 +- inst/doc/ale-intro.Rmd | 2 +- inst/doc/ale-intro.html | 2 +- inst/doc/ale-small-datasets.R | 2 +- inst/doc/ale-small-datasets.Rmd | 2 +- inst/doc/ale-small-datasets.html | 2 +- inst/doc/ale-statistics.R | 2 +- inst/doc/ale-statistics.Rmd | 2 +- inst/doc/ale-statistics.html | 4 ++-- inst/doc/ale-x-datatypes.R | 2 +- inst/doc/ale-x-datatypes.Rmd | 2 +- inst/doc/ale-x-datatypes.html | 2 +- man/ale.Rd | 2 +- vignettes/ale-intro.Rmd | 2 +- vignettes/ale-statistics.Rmd | 2 +- 19 files changed, 45 insertions(+), 45 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.16 dated 2025-01-08 and 1.9.17 dated 2025-03-10
DESCRIPTION | 8 - MD5 | 18 +- NEWS | 15 + inst/include/TMB.hpp | 6 inst/include/convert.hpp | 32 ---- inst/include/dynamic_data.hpp | 2 inst/include/tmb_core.hpp | 28 ++- inst/include/tmbutils/splines.hpp | 268 +++++++++++++++++++++++++++++++--- inst/include/tmbutils/tmbutils.hpp | 13 - inst/include/toggle_thread_safe_R.hpp | 9 - 10 files changed, 309 insertions(+), 90 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Andrew Johnson [aut],
Sebastian Weber [aut],
Hamada S. Badr [aut] ,
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Modrak Martin [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cp [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.32.6 dated 2024-03-05 and 2.32.7 dated 2025-03-10
DESCRIPTION | 6 - MD5 | 18 +-- R/pairs.R | 2 R/stanc.R | 2 inst/doc/SBC.html | 6 - inst/doc/external.html | 58 +++++------ inst/doc/rstan.html | 208 +++++++++++++++++++++--------------------- inst/doc/stanfit-objects.html | 162 ++++++++++++++++---------------- man/stan_plot_diagnostics.Rd | 2 src/misc.cpp | 3 10 files changed, 235 insertions(+), 232 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models for conditional quantile functions:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press,
<doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,
CRC Press, <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] ,
Pin Tian Ng [ctb] ,
Blaise Melly [ctb] ,
Achim Zeileis [ctb] ,
Philip Grosjean [ctb] ,
Cleve Moler [ctb] ,
Yousef Saad [ctb] ,
Victor Chernozhukov [ctb] ,
Ivan Fernandez-Val [ctb] ,
Martin Maechler [c [...truncated...]
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 6.00 dated 2025-01-29 and 6.1 dated 2025-03-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/sfn.R | 2 +- inst/ChangeLog | 14 +++++++++++++- 4 files changed, 20 insertions(+), 8 deletions(-)
Title: 3D Rendering Using Obliquely Projected Cubes and Cuboids
Description: Three-dimensional rendering for 'grid' and 'ggplot2' graphics using cubes and cuboids drawn with an oblique projection. As a special case also supports primary view orthographic projections. Can be viewed as an extension to the 'isocubes' package <https://github.com/coolbutuseless/isocubes>.
Author: Trevor L. Davis [aut, cre] ,
Mike FC [aut]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between oblicubes versions 0.1.2 dated 2022-08-27 and 1.0.0 dated 2025-03-10
oblicubes-0.1.2/oblicubes/man/figures/README-sdf-1.png |only oblicubes-1.0.0/oblicubes/DESCRIPTION | 14 oblicubes-1.0.0/oblicubes/LICENSE | 2 oblicubes-1.0.0/oblicubes/MD5 | 33 - oblicubes-1.0.0/oblicubes/NEWS.md | 8 oblicubes-1.0.0/oblicubes/R/geom_oblicubes.R | 6 oblicubes-1.0.0/oblicubes/R/geom_oblicuboids.R | 6 oblicubes-1.0.0/oblicubes/README.md | 71 -- oblicubes-1.0.0/oblicubes/build/vignette.rds |binary oblicubes-1.0.0/oblicubes/inst/doc/oblicubes.Rmd | 52 - oblicubes-1.0.0/oblicubes/inst/doc/oblicubes.html | 328 ++++------ oblicubes-1.0.0/oblicubes/inst/images |only oblicubes-1.0.0/oblicubes/man/geom_oblicubes.Rd | 44 - oblicubes-1.0.0/oblicubes/man/geom_oblicuboids.Rd | 44 - oblicubes-1.0.0/oblicubes/man/oblicubes-package.Rd | 2 oblicubes-1.0.0/oblicubes/tests/testthat/_snaps/geom_oblicubes/geom-oblicubes.svg | 22 oblicubes-1.0.0/oblicubes/tests/testthat/_snaps/geom_oblicuboids/geom-oblicuboids.svg | 22 oblicubes-1.0.0/oblicubes/vignettes/oblicubes.Rmd | 52 - 18 files changed, 326 insertions(+), 380 deletions(-)
Title: Bayesian Hierarchical Analysis of Cognitive Models of Choice
Description: Fit Bayesian (hierarchical) cognitive models
using a linear modeling language interface using particle Metropolis Markov
chain Monte Carlo sampling with Gibbs steps. The diffusion decision model (DDM),
linear ballistic accumulator model (LBA), racing diffusion model (RDM), and the lognormal
race model (LNR) are supported. Additionally, users can specify their own likelihood
function and/or choose for non-hierarchical
estimation, as well as for a diagonal, blocked or full multivariate normal
group-level distribution to test individual differences. Prior specification
is facilitated through methods that visualize the (implied) prior.
A wide range of plotting functions assist in assessing model convergence and
posterior inference. Models can be easily evaluated using functions
that plot posterior predictions or using relative model comparison metrics
such as information criteria or Bayes factors.
References: Stevenson et al. (2024) <doi:10.31234/osf.io/2e4dq>.
Author: Niek Stevenson [aut, cre] ,
Michelle Donzallaz [aut],
Andrew Heathcote [aut],
Steven Miletic [ctb],
Raphael Hartmann [ctb],
Karl C. Klauer [ctb],
Steven G. Johnson [ctb],
Jean M. Linhart [ctb],
Brian Gough [ctb],
Gerard Jungman [ctb],
Rudolf Schuerer [...truncated...]
Maintainer: Niek Stevenson <niek.stevenson@gmail.com>
Diff between EMC2 versions 3.0.0 dated 2025-03-06 and 3.1.0 dated 2025-03-10
DESCRIPTION | 6 +- MD5 | 23 ++++---- NAMESPACE | 1 NEWS.md | 15 +++++ R/design.R | 2 R/fitting.R | 6 +- R/make_data.R | 7 +- R/objects.R | 2 R/priors.R | 14 ++++- R/s3_funcs.R | 12 +++- R/statistics.R | 80 +++++++++++++++++++++++++++-- inst/doc/Simulation-based-Calibration.html | 4 - man/model_averaging.Rd |only 13 files changed, 143 insertions(+), 29 deletions(-)
Title: 'ade4' Tcl/Tk Graphical User Interface
Description: A Tcl/Tk GUI for some basic functions in the 'ade4' package.
Author: Jean Thioulouse [aut] ,
Stephane Dray [aut] ,
Aurelie Siberchicot [aut, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4TkGUI versions 0.3.3 dated 2025-03-03 and 0.3.4 dated 2025-03-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NAMESPACE | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 0.6
2016-03-08 0.5
2015-10-19 0.4
2015-04-20 0.3
2014-06-05 0.1
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Hyunki Lee [aut],
Changwoo Lim [aut],
Jinhwan Kim [aut] ,
Yoonkyoung Jeon [aut],
Jaewoong Heo [aut],
Youngsun Park [aut] ,
Hyungwoo Jo [aut],
Jeongmin Seo [aut],
Sungho Choi [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.6.3 dated 2025-02-19 and 1.6.4 dated 2025-03-10
DESCRIPTION | 14 ++++++++------ MD5 | 10 +++++----- NEWS.md | 5 +++++ R/kaplan.R | 14 ++++++++------ inst/doc/jsmodule.html | 4 ++-- inst/doc/jsmodule_subgroup_cmprsk.html | 4 ++-- 6 files changed, 30 insertions(+), 21 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.app/>).
Author: Fernando Miguez [aut, cre]
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 2.8.0 dated 2024-08-19 and 2.8.235 dated 2025-03-10
apsimx-2.8.0/apsimx/inst/extdata/MaizeSoybean.db |only apsimx-2.8.0/apsimx/inst/extdata/Wheat-opt-ex.db |only apsimx-2.8.235/apsimx/DESCRIPTION | 11 apsimx-2.8.235/apsimx/MD5 | 102 apsimx-2.8.235/apsimx/NAMESPACE | 3 apsimx-2.8.235/apsimx/R/apsim_classic.R | 16 apsimx-2.8.235/apsimx/R/apsim_internal.R | 222 apsimx-2.8.235/apsimx/R/apsim_version.R | 12 apsimx-2.8.235/apsimx/R/apsimx.R | 408 apsimx-2.8.235/apsimx/R/apsimx_soil_profile.R | 853 apsimx-2.8.235/apsimx/R/edit_apsimx_batch.R | 2 apsimx-2.8.235/apsimx/R/edit_apsimx_json.R | 10 apsimx-2.8.235/apsimx/R/edit_apsimx_replace_soil_profile.R | 649 apsimx-2.8.235/apsimx/R/edit_apsimx_replacement.R | 5 apsimx-2.8.235/apsimx/R/extract_data_apsimx.R | 407 apsimx-2.8.235/apsimx/R/get_isric_soil_profile.R | 215 apsimx-2.8.235/apsimx/R/get_slga_soil_profile.R |only apsimx-2.8.235/apsimx/R/get_ssurgo_tables.R | 295 apsimx-2.8.235/apsimx/R/inspect_apsimx_json.R | 3419 apsimx-2.8.235/apsimx/R/inspect_apsimx_replacement.R | 8 apsimx-2.8.235/apsimx/R/optim_apsim.R | 1 apsimx-2.8.235/apsimx/R/optim_apsimx.R | 6 apsimx-2.8.235/apsimx/R/sens_apsimx.R | 149 apsimx-2.8.235/apsimx/R/ssurgo2sp.R | 680 apsimx-2.8.235/apsimx/R/view_apsimx.R | 5 apsimx-2.8.235/apsimx/inst/doc/apsimx-scripts.R | 28 apsimx-2.8.235/apsimx/inst/doc/apsimx-scripts.html | 8 apsimx-2.8.235/apsimx/inst/doc/apsimx.R | 60 apsimx-2.8.235/apsimx/inst/doc/apsimx.Rmd | 8 apsimx-2.8.235/apsimx/inst/doc/apsimx.html | 32 apsimx-2.8.235/apsimx/inst/doc/optim-apsim.R | 46 apsimx-2.8.235/apsimx/inst/doc/optim-apsim.html | 40 apsimx-2.8.235/apsimx/inst/doc/sensitivity-apsim.R | 118 apsimx-2.8.235/apsimx/inst/doc/sensitivity-apsim.html | 22 apsimx-2.8.235/apsimx/inst/extdata/Wheat-opt-ex.apsimx |36847 ++-------- apsimx-2.8.235/apsimx/inst/extdata/Wheat-opt-ex_backup.apsimx |only apsimx-2.8.235/apsimx/inst/extdata/WheatRye.apsimx |36157 ++------- apsimx-2.8.235/apsimx/inst/extdata/Wheat_Rye.apsimx |only apsimx-2.8.235/apsimx/man/apsimx.Rd | 8 apsimx-2.8.235/apsimx/man/apsimx.options.Rd | 2 apsimx-2.8.235/apsimx/man/apsimx_options.Rd | 5 apsimx-2.8.235/apsimx/man/compare_apsim_soil_profile.Rd | 16 apsimx-2.8.235/apsimx/man/edit_apsimx_replace_soil_profile.Rd | 2 apsimx-2.8.235/apsimx/man/extract_data_apsimx.Rd | 30 apsimx-2.8.235/apsimx/man/get_isric_soil_profile.Rd | 2 apsimx-2.8.235/apsimx/man/get_slga_soil.Rd |only apsimx-2.8.235/apsimx/man/get_slga_soil_profile.Rd |only apsimx-2.8.235/apsimx/man/sens_apsimx.Rd | 20 apsimx-2.8.235/apsimx/tests/test_check_apsimx.R | 49 apsimx-2.8.235/apsimx/tests/test_compare_apsim_soil_profiles.R |only apsimx-2.8.235/apsimx/tests/test_cores_sens_apsimx.R | 474 apsimx-2.8.235/apsimx/tests/test_get_isric_soil_profile.R | 39 apsimx-2.8.235/apsimx/tests/test_get_slga_soil_profile.R |only apsimx-2.8.235/apsimx/tests/test_optim_apsimx.R | 1156 apsimx-2.8.235/apsimx/tests/test_sens_apsimx.R | 201 apsimx-2.8.235/apsimx/tests/test_sr_ks.R |only apsimx-2.8.235/apsimx/vignettes/apsimx.Rmd | 8 57 files changed, 27278 insertions(+), 55578 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-26 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-02 2.1.17
2023-10-04 2.1.14
2022-10-22 2.1.11
2022-09-16 2.1.9
2022-09-15 2.1.8
2022-09-05 2.1.7
2022-08-26 2.1.5