Title: National Emergency Medical Service Quality Alliance Measure
Calculations
Description: Designed to automate the calculation of Emergency Medical Service (EMS) quality metrics,
'nemsqar' implements measures defined by the National EMS Quality Alliance (NEMSQA). By providing
reliable, evidence-based quality assessments, the package supports EMS agencies,
healthcare providers, and researchers in evaluating and improving patient outcomes.
Users can find details on all approved NEMSQA measures at <https://www.nemsqa.org/measures>.
Full technical specifications, including documentation and pseudocode used to develop
'nemsqar', are available on the NEMSQA website after creating a user profile at
<https://www.nemsqa.org>.
Author: Nicolas Foss [aut, cre],
Samuel Kordik [aut] ,
Alyssa Green [ctb],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between nemsqar versions 1.0.0 dated 2025-03-05 and 1.1.0 dated 2025-03-13
DESCRIPTION | 11 - MD5 | 151 ++++++++++++------------ NAMESPACE | 4 NEWS.md | 110 ++++++++--------- R/airway_01.R | 120 ++++++++++++------- R/airway_05.R | 124 ++++++++++++-------- R/airway_18.R | 129 ++++++++++++--------- R/asthma_01.R | 72 +++++++++-- R/hypoglycemia_01.R | 78 ++++++++++-- R/nemsqa_binomial_confint.R |only R/nemsqar-package.R | 3 R/pediatrics_03b.R | 90 +++++++++++--- R/respiratory_01.R | 78 ++++++++++-- R/respiratory_02.R | 88 +++++++++++--- R/results_summarize.R | 159 +++++++++++++++++++------- R/safety_01.R | 80 ++++++++++--- R/safety_02.R | 77 ++++++++++-- R/safety_04.R | 105 ++++++++++++----- R/seizure_02.R | 76 ++++++++++-- R/stroke_01.R | 107 ++++++++++++----- R/summarize_measure.R | 105 +++++++++++++---- R/syncope_01.R | 128 ++++++++++++-------- R/tbi_01.R | 129 ++++++++++++--------- R/trauma_01.R | 77 ++++++++++-- R/trauma_03.R | 92 +++++++++++---- R/trauma_04.R | 94 ++++++++++++--- R/trauma_08.R | 126 ++++++++++++-------- R/trauma_14.R | 101 +++++++++++++--- R/ttr_01.R | 121 ++++++++++++------- README.md | 2 man/airway_01.Rd | 47 ++++++- man/airway_05.Rd | 49 ++++++-- man/airway_18.Rd | 52 ++++++-- man/asthma_01.Rd | 47 +++++-- man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/hypoglycemia_01.Rd | 54 ++++++-- man/nemsqa_binomial_confint.Rd |only man/pediatrics_03b.Rd | 56 ++++++--- man/respiratory_01.Rd | 52 ++++++-- man/respiratory_02.Rd | 54 ++++++-- man/results_summarize.Rd | 81 ++++++++++--- man/safety_01.Rd | 54 ++++++-- man/safety_02.Rd | 54 ++++++-- man/safety_04.Rd | 51 ++++++-- man/seizure_02.Rd | 50 ++++++-- man/stroke_01.Rd | 53 ++++++-- man/summarize_measure.Rd | 69 +++++++++-- man/syncope_01.Rd | 52 ++++++-- man/tbi_01.Rd | 53 ++++++-- man/trauma_01.Rd | 51 ++++++-- man/trauma_03.Rd | 51 ++++++-- man/trauma_04.Rd | 51 ++++++-- man/trauma_08.Rd | 50 ++++++-- man/trauma_14.Rd | 51 ++++++-- man/ttr_01.Rd | 45 +++++-- tests/testthat/test-airway_01.R | 59 +++++++++ tests/testthat/test-airway_05.R | 38 ++++++ tests/testthat/test-airway_18.R | 41 ++++++ tests/testthat/test-asthma_01.R | 30 ++++ tests/testthat/test-hypoglycemia_01.R | 38 ++++++ tests/testthat/test-nemsqa_binomial_confint.R |only tests/testthat/test-pediatrics_03b.R | 35 +++++ tests/testthat/test-respiratory_01.R | 31 +++++ tests/testthat/test-respiratory_02.R | 29 ++++ tests/testthat/test-safety_01.R | 25 ++++ tests/testthat/test-safety_02.R | 29 ++++ tests/testthat/test-safety_04.R | 33 +++++ tests/testthat/test-seizure_02.R | 32 +++++ tests/testthat/test-stroke_01.R | 32 +++++ tests/testthat/test-syncope_01.R | 34 +++++ tests/testthat/test-tbi_01.R | 40 ++++++ tests/testthat/test-trauma_01.R | 36 +++++ tests/testthat/test-trauma_03.R | 38 ++++++ tests/testthat/test-trauma_04.R | 91 ++++++++++++++ tests/testthat/test-trauma_08.R | 34 +++++ tests/testthat/test-trauma_14.R | 62 ++++++++++ tests/testthat/test-ttr_01.R | 42 ++++++ 80 files changed, 3585 insertions(+), 1108 deletions(-)
Title: Fast Functional Mixed Models using Fast Univariate Inference
Description: Implementation of the fast univariate inference approach (Cui et al. (2022) <doi:10.1080/10618600.2021.1950006>, Loewinger et al. (2024) <doi:10.7554/eLife.95802.2>) for fitting functional mixed models. User guides and Python package information can be found at <https://github.com/gloewing/photometry_FLMM>.
Author: Erjia Cui [aut, cre],
Gabriel Loewinger [aut],
Al Xin [ctb]
Maintainer: Erjia Cui <ecui@umn.edu>
Diff between fastFMM versions 0.3.0 dated 2024-09-29 and 0.4.0 dated 2025-03-13
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/fui.R | 10 ++++++++-- R/plot_fui.R | 4 ++++ README.md | 3 ++- inst/doc/fastFMM-vignette.pdf |binary man/fui.Rd | 9 +++++++-- man/plot_fui.Rd | 4 ++++ 9 files changed, 44 insertions(+), 18 deletions(-)
Title: 'VigiBase' Pharmacovigilance Database Toolbox
Description: Perform the analysis of the World Health Organization
(WHO) Pharmacovigilance database 'VigiBase' (Extract Case Level version),
<https://who-umc.org/>
e.g., load data, perform data management,
disproportionality analysis, and descriptive statistics. Intended for
pharmacovigilance routine use or studies.
This package is NOT supported nor reflect the opinion of the WHO, or the
Uppsala Monitoring Centre.
Disproportionality methods are described by Norén et
al (2013) <doi:10.1177/0962280211403604>.
Author: Charles Dolladille [aut, cre] ,
Basile Chretien [aut] ,
Universite de Caen Normandie [cph] ,
Unite de pharmaco-epidemiologie [cph]
Maintainer: Charles Dolladille <cdolladille@hotmail.com>
Diff between vigicaen versions 0.15.5 dated 2025-02-21 and 0.15.6 dated 2025-03-13
vigicaen-0.15.5/vigicaen/man/figures/README-pressure-1.png |only vigicaen-0.15.5/vigicaen/man/figures/README-pv_advanced-1.png |only vigicaen-0.15.5/vigicaen/man/figures/README-pv_routine-1.png |only vigicaen-0.15.5/vigicaen/man/figures/vg.svg |only vigicaen-0.15.6/vigicaen/DESCRIPTION | 8 vigicaen-0.15.6/vigicaen/MD5 | 232 - vigicaen-0.15.6/vigicaen/NAMESPACE | 1 vigicaen-0.15.6/vigicaen/NEWS.md | 29 vigicaen-0.15.6/vigicaen/R/check_data_type.R | 41 vigicaen-0.15.6/vigicaen/R/check_dm.R | 97 vigicaen-0.15.6/vigicaen/R/check_id_list.R | 34 vigicaen-0.15.6/vigicaen/R/compute_dispro.R | 624 ++-- vigicaen-0.15.6/vigicaen/R/compute_or_mod.R | 217 - vigicaen-0.15.6/vigicaen/R/create_example_tables.R | 620 ++-- vigicaen-0.15.6/vigicaen/R/data_doc.R | 688 ++-- vigicaen-0.15.6/vigicaen/R/desc_cont.R | 548 ++- vigicaen-0.15.6/vigicaen/R/desc_dch.R | 310 +- vigicaen-0.15.6/vigicaen/R/desc_facvar.R | 437 +- vigicaen-0.15.6/vigicaen/R/desc_outcome.R | 344 +- vigicaen-0.15.6/vigicaen/R/desc_rch.R | 269 - vigicaen-0.15.6/vigicaen/R/desc_tto.R | 214 - vigicaen-0.15.6/vigicaen/R/dt_fst.R | 118 vigicaen-0.15.6/vigicaen/R/dt_parquet.R | 164 - vigicaen-0.15.6/vigicaen/R/extract_tto.R | 195 - vigicaen-0.15.6/vigicaen/R/fix_path_endslash.R | 50 vigicaen-0.15.6/vigicaen/R/get_atc_code.R | 276 - vigicaen-0.15.6/vigicaen/R/get_drecno.R | 31 vigicaen-0.15.6/vigicaen/R/get_llt_smq.R | 16 vigicaen-0.15.6/vigicaen/R/get_llt_soc.R | 572 +-- vigicaen-0.15.6/vigicaen/R/ic_tail.R | 11 vigicaen-0.15.6/vigicaen/R/query_data_type.R | 4 vigicaen-0.15.6/vigicaen/R/reader.R | 62 vigicaen-0.15.6/vigicaen/R/screen_adr.R | 15 vigicaen-0.15.6/vigicaen/R/screen_drug.R | 272 - vigicaen-0.15.6/vigicaen/R/tb_meddra.R | 408 +- vigicaen-0.15.6/vigicaen/R/tb_subset.R | 28 vigicaen-0.15.6/vigicaen/R/tb_vigibase.R | 1431 ++++----- vigicaen-0.15.6/vigicaen/R/tb_who.R | 1388 ++++----- vigicaen-0.15.6/vigicaen/R/texter.R | 60 vigicaen-0.15.6/vigicaen/R/vigi_routine.R | 1359 +++++---- vigicaen-0.15.6/vigicaen/README.md | 14 vigicaen-0.15.6/vigicaen/data/mp_.rda |binary vigicaen-0.15.6/vigicaen/inst/doc/basic_workflow.Rmd | 1510 +++++----- vigicaen-0.15.6/vigicaen/inst/doc/basic_workflow.html | 2 vigicaen-0.15.6/vigicaen/inst/doc/descriptive.R | 2 vigicaen-0.15.6/vigicaen/inst/doc/descriptive.Rmd | 5 vigicaen-0.15.6/vigicaen/inst/doc/descriptive.html | 56 vigicaen-0.15.6/vigicaen/inst/doc/getting_started.Rmd | 418 +- vigicaen-0.15.6/vigicaen/inst/doc/interactions.Rmd | 402 +- vigicaen-0.15.6/vigicaen/inst/doc/routine_pharmacovigilance.R | 8 vigicaen-0.15.6/vigicaen/inst/doc/routine_pharmacovigilance.Rmd | 40 vigicaen-0.15.6/vigicaen/inst/doc/routine_pharmacovigilance.html | 58 vigicaen-0.15.6/vigicaen/inst/doc/template_dictionary.Rmd | 292 - vigicaen-0.15.6/vigicaen/inst/doc/template_main.R | 1 vigicaen-0.15.6/vigicaen/inst/doc/template_main.Rmd | 687 ++-- vigicaen-0.15.6/vigicaen/inst/doc/template_main.html | 7 vigicaen-0.15.6/vigicaen/man/create_example_tables.Rd | 188 - vigicaen-0.15.6/vigicaen/man/desc_facvar.Rd | 2 vigicaen-0.15.6/vigicaen/man/desc_rch.Rd | 6 vigicaen-0.15.6/vigicaen/man/figures/README-render_graph-1.png |binary vigicaen-0.15.6/vigicaen/man/figures/vg.png |only vigicaen-0.15.6/vigicaen/man/ic_tail.Rd | 2 vigicaen-0.15.6/vigicaen/tests/testthat.R | 24 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/add_adr.md | 2 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/add_drug.md | 2 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/check_data_type.md | 290 + vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/check_dm.md | 8 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/check_id_list.md | 51 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/compute_dispro.md | 14 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/desc_cont.md |only vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/desc_outcome.md | 2 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/desc_rch.md | 10 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/extract_tto.md | 2 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/get_drecno.md | 52 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/query_data_type.md | 4 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/screen_drug.md | 12 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/tb_subset.md | 45 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/tb_vigibase.md | 9 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/tb_who.md | 9 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine.md | 114 vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/arrow-table.svg |only vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/base-graphic.svg | 590 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/case-time-to-onset.svg | 602 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/case-tto-below-median.svg | 602 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/custom-drug-and-adr-labels.svg | 602 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/exporting.svg | 602 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/ic025-below-0.svg | 590 ++- vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/no-cases.svg | 254 + vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/no-rechallenge.svg |only vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-export.svg | 254 + vigicaen-0.15.6/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset.svg | 254 + vigicaen-0.15.6/vigicaen/tests/testthat/test-add_drug.R | 1430 ++++----- vigicaen-0.15.6/vigicaen/tests/testthat/test-check_data_type.R | 374 +- vigicaen-0.15.6/vigicaen/tests/testthat/test-check_dm.R | 98 vigicaen-0.15.6/vigicaen/tests/testthat/test-check_id_list.R | 159 - vigicaen-0.15.6/vigicaen/tests/testthat/test-compute_dispro.R | 908 +++--- vigicaen-0.15.6/vigicaen/tests/testthat/test-compute_or_mod.R | 199 - vigicaen-0.15.6/vigicaen/tests/testthat/test-create_example_tables.R | 178 - vigicaen-0.15.6/vigicaen/tests/testthat/test-desc_cont.R | 783 ++--- vigicaen-0.15.6/vigicaen/tests/testthat/test-desc_dch.R | 37 vigicaen-0.15.6/vigicaen/tests/testthat/test-desc_facvar.R | 827 ++--- vigicaen-0.15.6/vigicaen/tests/testthat/test-desc_outcome.R | 12 vigicaen-0.15.6/vigicaen/tests/testthat/test-desc_rch.R | 59 vigicaen-0.15.6/vigicaen/tests/testthat/test-dt_fst.R | 140 vigicaen-0.15.6/vigicaen/tests/testthat/test-dt_parquet.R | 158 - vigicaen-0.15.6/vigicaen/tests/testthat/test-extract_tto.R | 442 +- vigicaen-0.15.6/vigicaen/tests/testthat/test-get_atc_code.R | 100 vigicaen-0.15.6/vigicaen/tests/testthat/test-get_drecno.R | 1366 ++++----- vigicaen-0.15.6/vigicaen/tests/testthat/test-ic_tail.R | 10 vigicaen-0.15.6/vigicaen/tests/testthat/test-screen_adr.R | 622 ++-- vigicaen-0.15.6/vigicaen/tests/testthat/test-tb_subset.R | 1009 +++--- vigicaen-0.15.6/vigicaen/tests/testthat/test-tb_vigibase.R | 845 ++--- vigicaen-0.15.6/vigicaen/tests/testthat/test-tb_who.R | 193 - vigicaen-0.15.6/vigicaen/tests/testthat/test-vigi_routine.R | 293 + vigicaen-0.15.6/vigicaen/vignettes/basic_workflow.Rmd | 1510 +++++----- vigicaen-0.15.6/vigicaen/vignettes/descriptive.Rmd | 5 vigicaen-0.15.6/vigicaen/vignettes/getting_started.Rmd | 418 +- vigicaen-0.15.6/vigicaen/vignettes/interactions.Rmd | 402 +- vigicaen-0.15.6/vigicaen/vignettes/routine_pharmacovigilance.Rmd | 40 vigicaen-0.15.6/vigicaen/vignettes/template_dictionary.Rmd | 292 - vigicaen-0.15.6/vigicaen/vignettes/template_main.Rmd | 687 ++-- 121 files changed, 18495 insertions(+), 14974 deletions(-)
Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Author: Patrice Kiener [aut, cre]
Maintainer: Patrice Kiener <rpackages@inmodelia.com>
Diff between RWsearch versions 5.2.0 dated 2024-10-12 and 5.2.4 dated 2025-03-13
DESCRIPTION | 14 MD5 | 47 NAMESPACE | 2 NEWS | 23 R/p_inst.R | 112 - R/p_vers.R | 35 build/vignette.rds |binary inst/doc/RWsearch-1-Introduction.R |only inst/doc/RWsearch-1-Introduction.Rmd | 20 inst/doc/RWsearch-1-Introduction.html | 1412 +++++-------- inst/doc/RWsearch-2-Display-Download-Documentation.Rmd | 14 inst/doc/RWsearch-2-Display-Download-Documentation.html | 1250 +++-------- inst/doc/RWsearch-3-Package-versions-and-dependencies.Rmd | 16 inst/doc/RWsearch-3-Package-versions-and-dependencies.html | 778 +------ inst/doc/RWsearch-4-Tools-for-taskviews.Rmd | 14 inst/doc/RWsearch-4-Tools-for-taskviews.html | 1008 ++------- inst/doc/RWsearch-5-Web-search-engines.Rmd | 14 inst/doc/RWsearch-5-Web-search-engines.html | 1377 +++++------- man/p_inst.Rd | 45 man/p_vers.Rd | 10 vignettes/RWsearch-1-Introduction.Rmd | 20 vignettes/RWsearch-2-Display-Download-Documentation.Rmd | 14 vignettes/RWsearch-3-Package-versions-and-dependencies.Rmd | 16 vignettes/RWsearch-4-Tools-for-taskviews.Rmd | 14 vignettes/RWsearch-5-Web-search-engines.Rmd | 14 25 files changed, 2317 insertions(+), 3952 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <https://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey [aut],
Cory Nathe [cre]
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 3.4.1 dated 2024-11-11 and 3.4.2 dated 2025-03-13
DESCRIPTION | 8 +++---- MD5 | 12 +++++----- NEWS | 4 +++ R/labkey.webdav.R | 41 ++++++++++++++++++++---------------- man/Rlabkey-package.Rd | 4 +-- man/labkey.webdav.downloadFolder.Rd | 4 ++- man/labkey.webdav.get.Rd | 4 ++- 7 files changed, 45 insertions(+), 32 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.1 dated 2025-02-06 and 1.1.2 dated 2025-03-13
DrugExposureDiagnostics-1.1.1/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/ShinyApp.R |only DrugExposureDiagnostics-1.1.1/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/ShinyModule.R |only DrugExposureDiagnostics-1.1.1/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/data2 |only DrugExposureDiagnostics-1.1.1/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/global-new.R |only DrugExposureDiagnostics-1.1.1/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/mock.zip |only DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/DESCRIPTION | 12 - DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/MD5 | 68 ++++------ DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/NEWS.md | 7 + DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/dataPlotPanel.R | 5 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/executeChecks.R | 31 +++- DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/getDrugRecords.R | 10 + DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/metaDataPanel.R | 1 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/mockDrugExposure.R | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/shiny.R | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/R/utils.R | 23 +++ DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DaysSupply.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DiagnosticsSummary.html | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DrugDose.html | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DrugDuration.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DrugSig.html | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DrugSourceConcepts.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/DrugTypes.html | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.R | 1 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.Rmd | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.html | 51 ++++--- DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/Missingness.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/Quantity.html | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/Routes.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/doc/VerbatimEndDate.html | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/SaveRDS.R |only DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/utils.R | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/man/executeChecks.Rd | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/man/executeChecksSingleIngredient.Rd | 6 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/man/getAllCheckOptions.Rd |only DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/man/getDrugRecords.Rd | 4 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/man/validateChecks.Rd |only DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/tests/testthat/test-SyntheaSqlServer.R | 2 DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/tests/testthat/test-executeChecks.R | 47 ++++++ DrugExposureDiagnostics-1.1.2/DrugExposureDiagnostics/vignettes/IntroductionToDrugExposureDiagnostics.Rmd | 2 39 files changed, 216 insertions(+), 100 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Automatic Construction of Forced-Choice Tests
Description: Forced-choice (FC) response has gained increasing popularity
and interest for its resistance to faking when well-designed (Cao &
Drasgow, 2019 <doi:10.1037/apl0000414>). To established well-designed
FC scales, typically each item within a block should measure different
trait and have similar level of social desirability (Zhang et al.,
2020 <doi:10.1177/1094428119836486>). Recent study also suggests the
importance of high inter-item agreement of social desirability between
items within a block (Pavlov et al., 2021 <doi:10.31234/osf.io/hmnrc>).
In addition to this, FC developers may
also need to maximize factor loading differences (Brown &
Maydeu-Olivares, 2011 <doi:10.1177/0013164410375112>) or minimize item
location differences (Cao & Drasgow, 2019 <doi:10.1037/apl0000414>)
depending on scoring models. Decision of which items should be
assigned to the same block, termed item pairing, is thus critical to
the quality of an FC test. This pairing p [...truncated...]
Author: Mengtong Li [cre, aut] ,
Tianjun Sun [aut] ,
Bo Zhang [aut]
Maintainer: Mengtong Li <ml70@illinois.edu>
Diff between autoFC versions 0.2.0.1001 dated 2024-02-17 and 0.2.0.1002 dated 2025-03-13
DESCRIPTION | 6 - MD5 | 12 +- R/fit_TIRT_model.R | 4 R/sa_pairing_generalized.R | 6 - build/vignette.rds |binary inst/doc/autoFC.R | 2 inst/doc/autoFC.html | 266 ++++++++++++++++++++++----------------------- 7 files changed, 148 insertions(+), 148 deletions(-)
Title: Hybrid FA-CFA for Controlling Acquiescence in Restricted
Factorial Solutions
Description: Performs hybrid multi-stage factor analytic procedure for controlling acquiescence in restricted solutions (Ferrando & Lorenzo-Seva, 2000 <https://www.uv.es/revispsi/articulos3.00/ferran7.pdf>).
Author: David Navarro-Gonzalez [aut, cre],
Pere J. Ferrando [aut],
Fabia Morales-Vives [aut],
Ana Hernandez-Dorado [aut]
Maintainer: David Navarro-Gonzalez <david.navarro@udl.cat>
Diff between siren versions 1.0.5 dated 2024-11-07 and 1.0.6 dated 2025-03-13
DESCRIPTION | 8 +- MD5 | 14 ++--- inst/doc/vignette.R | 4 - inst/doc/vignette.Rmd | 37 ++++++------- inst/doc/vignette.html | 137 +++++++++++++++++++++++-------------------------- man/acquihybrid.Rd | 10 +-- man/siren-package.Rd | 2 vignettes/vignette.Rmd | 37 ++++++------- 8 files changed, 119 insertions(+), 130 deletions(-)
Title: 'REST' API Client for Accessing Data on 'WEkEO HDA V2'
Description: Provides seamless access to the WEkEO Harmonised Data Access (HDA) API, enabling
users to query, download, and process data efficiently from the HDA platform.
With 'hdar', researchers and data scientists can integrate the extensive HDA
datasets into their R workflows, enhancing their data analysis capabilities.
Comprehensive information on the API functionality and usage is available
at <https://gateway.prod.wekeo2.eu/hda-broker/docs>.
Author: Matteo Mattiuzzi [aut, cre]
Maintainer: Matteo Mattiuzzi <matteo.mattiuzzi@eea.europa.eu>
Diff between hdar versions 1.0.4 dated 2024-11-19 and 1.0.5 dated 2025-03-13
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 22 ++++++++++++++++++---- README.md | 3 +++ build/vignette.rds |binary inst/doc/hdar.html | 4 ++-- vignettes/dsvsd.html |only vignettes/dsvsd.qmd |only vignettes/dsvsd_files |only 9 files changed, 27 insertions(+), 10 deletions(-)
Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage
using specified enrollment and time-to-event models through
simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.2.6 dated 2024-09-17 and 0.2.7 dated 2025-03-13
eventPred-0.2.6/eventPred/R/runShinyApp.R |only eventPred-0.2.6/eventPred/man/llik_pwexp.Rd |only eventPred-0.2.6/eventPred/man/runShinyApp.Rd |only eventPred-0.2.7/eventPred/DESCRIPTION | 20 eventPred-0.2.7/eventPred/MD5 | 86 eventPred-0.2.7/eventPred/NAMESPACE | 34 eventPred-0.2.7/eventPred/NEWS.md | 15 eventPred-0.2.7/eventPred/R/eventPred-package.R | 84 eventPred-0.2.7/eventPred/R/fitDropout.R | 203 - eventPred-0.2.7/eventPred/R/fitEnrollment.R | 92 eventPred-0.2.7/eventPred/R/fitEvent.R | 200 - eventPred-0.2.7/eventPred/R/getPrediction.R | 1099 ++----- eventPred-0.2.7/eventPred/R/predictEnrollment.R | 371 +- eventPred-0.2.7/eventPred/R/predictEvent.R | 1494 +++++----- eventPred-0.2.7/eventPred/R/runShinyApp_eventPred.R |only eventPred-0.2.7/eventPred/R/summarizeObserved.R | 334 +- eventPred-0.2.7/eventPred/R/utilities.R | 191 - eventPred-0.2.7/eventPred/build/vignette.rds |binary eventPred-0.2.7/eventPred/inst/doc/event_prediction_after_enrollment_completion.Rmd | 4 eventPred-0.2.7/eventPred/inst/doc/event_prediction_after_enrollment_completion.html | 16 eventPred-0.2.7/eventPred/inst/doc/event_prediction_at_the_design_stage.html | 14 eventPred-0.2.7/eventPred/inst/doc/event_prediction_before_enrollment_completion.Rmd | 4 eventPred-0.2.7/eventPred/inst/doc/event_prediction_before_enrollment_completion.html | 22 eventPred-0.2.7/eventPred/inst/doc/event_prediction_incorporating_covariates.Rmd | 4 eventPred-0.2.7/eventPred/inst/doc/event_prediction_incorporating_covariates.html | 14 eventPred-0.2.7/eventPred/inst/doc/event_prediction_incorporating_prior_information.Rmd | 4 eventPred-0.2.7/eventPred/inst/doc/event_prediction_incorporating_prior_information.html | 22 eventPred-0.2.7/eventPred/inst/shinyApp/app.R | 504 ++- eventPred-0.2.7/eventPred/inst/shinyApp/www/manual.pdf |binary eventPred-0.2.7/eventPred/man/eventPred-package.Rd | 74 eventPred-0.2.7/eventPred/man/fitDropout.Rd | 32 eventPred-0.2.7/eventPred/man/fitEnrollment.Rd | 15 eventPred-0.2.7/eventPred/man/fitEvent.Rd | 35 eventPred-0.2.7/eventPred/man/getPrediction.Rd | 38 eventPred-0.2.7/eventPred/man/pllik_pwexp.Rd |only eventPred-0.2.7/eventPred/man/pmodavg.Rd | 7 eventPred-0.2.7/eventPred/man/ppwexp.Rd | 7 eventPred-0.2.7/eventPred/man/predictEnrollment.Rd | 14 eventPred-0.2.7/eventPred/man/predictEvent.Rd | 55 eventPred-0.2.7/eventPred/man/pwexpreg.Rd | 7 eventPred-0.2.7/eventPred/man/qpwexp.Rd | 7 eventPred-0.2.7/eventPred/man/runShinyApp_eventPred.Rd |only eventPred-0.2.7/eventPred/man/summarizeObserved.Rd | 10 eventPred-0.2.7/eventPred/vignettes/event_prediction_after_enrollment_completion.Rmd | 4 eventPred-0.2.7/eventPred/vignettes/event_prediction_before_enrollment_completion.Rmd | 4 eventPred-0.2.7/eventPred/vignettes/event_prediction_incorporating_covariates.Rmd | 4 eventPred-0.2.7/eventPred/vignettes/event_prediction_incorporating_prior_information.Rmd | 4 47 files changed, 2807 insertions(+), 2341 deletions(-)
More information about SeuratExplorer at CRAN
Permanent link
Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <ssm@msu.edu>
Diff between taxonomizr versions 0.10.8 dated 2025-02-27 and 0.11.1 dated 2025-03-13
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/taxa.R | 30 +++++++++++++++--------------- README.md | 5 ++++- inst/doc/usage.Rmd | 3 +++ inst/doc/usage.html | 8 ++++++++ man/getDescendants.Rd | 4 ++-- man/getRawTaxonomy.Rd | 4 ++-- man/getTaxonomy.Rd | 7 +++---- man/getTaxonomy2.Rd | 7 +++---- man/normalizeTaxa.Rd | 6 +++--- man/read.nodes.Rd | 2 +- man/read.nodes.sql.Rd | 2 +- tests/testthat/test_taxa.R | 44 ++++++++++++++++++++++---------------------- vignettes/usage.Rmd | 3 +++ 15 files changed, 88 insertions(+), 73 deletions(-)
Title: Text Analysis for All
Description: An R 'shiny' app designed for diverse text analysis tasks, offering a wide range of methodologies tailored to Natural Language Processing (NLP) needs.
It is a versatile, general-purpose tool for analyzing textual data.
'tall' features a comprehensive workflow, including data cleaning, preprocessing, statistical analysis, and visualization, all integrated for effective text analysis.
Author: Massimo Aria [aut, cre, cph] ,
Maria Spano [aut] ,
Luca D'Aniello [aut] ,
Corrado Cuccurullo [ctb] ,
Michelangelo Misuraca [ctb]
Maintainer: Massimo Aria <aria@unina.it>
Diff between tall versions 0.1.0 dated 2025-02-06 and 0.1.1 dated 2025-03-13
DESCRIPTION | 10 MD5 | 26 NAMESPACE | 2 NEWS.md | 4 R/reinert.R | 130 +-- R/tall.R | 7 R/zzz.R | 2 inst/tall/helpContent.R | 1784 +++++++++++++++++++++++++++------------------- inst/tall/libraries.R | 52 - inst/tall/server.R | 906 +++++++++++++---------- inst/tall/tallFunctions.R | 824 +++++++++++++++------ inst/tall/tallShot.R | 18 inst/tall/ui.R | 1319 +++++++++++++++++++--------------- man/reinert.Rd | 2 14 files changed, 3106 insertions(+), 1980 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', 'SQLite', and 'InterSystems IRIS'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.19.1 dated 2024-11-29 and 1.19.2 dated 2025-03-13
DESCRIPTION | 8 +- MD5 | 36 ++++++------ NEWS.md | 12 ++++ R/HelperFunctions.R | 2 R/RenderSql.R | 2 R/ShinyApps.R | 2 R/SparkSql.R | 2 R/SqlRender.R | 2 inst/csv/replacementPatterns.csv | 6 +- inst/doc/UsingSqlRender.R | 70 ++++++++++++------------- inst/doc/UsingSqlRender.pdf |binary java/org/ohdsi/sql/BigQuerySparkTranslate.java | 2 java/org/ohdsi/sql/JarChecksum.java | 2 java/org/ohdsi/sql/MainClass.java | 2 java/org/ohdsi/sql/SqlRender.java | 2 java/org/ohdsi/sql/SqlSplit.java | 2 java/org/ohdsi/sql/SqlTranslate.java | 2 java/org/ohdsi/sql/StringUtils.java | 2 tests/testthat/test-translate-spark.R | 21 ++++++- 19 files changed, 104 insertions(+), 73 deletions(-)
Title: Spatial Transfer of Statistics among Spanish Census Sections
Description: Transfers/imputes statistics among Spanish spatial polygons (census sections or postal code areas) from different moments in time (2001-2023) without need of spatial files, just linking statistics to the ID codes of the spatial units.
The data available in the census sections of a partition/division (cartography) into force in a moment of time is transferred to the census sections of another partition/division employing the geometric approach (also known as areal weighting or polygon overlay).
References:
Goerlich (2022) <doi:10.12842/WPIVIE_0322>.
Pavía and Cantarino (2017a, b) <doi:10.1111/gean.12112>, <doi:10.1016/j.apgeog.2017.06.021>.
Pérez and Pavía (2024a, b) <doi:10.4995/CARMA2024.2024.17796>, <doi:10.38191/iirr-jorr.24.057>.
Acknowledgements:
The authors wish to thank Consellería de Educación, Universidades y Empleo, Generalitat Valenciana (grant AICO/2021/257), Ministerio de Economía e Innovación (grant PID2021-128228NB-I00) and Fundación Mapfre [...truncated...]
Author: Virgilio Perez [aut] ,
Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between sc2sc versions 0.0.1-14 dated 2024-10-27 and 0.0.1-16 dated 2025-03-13
DESCRIPTION | 6 +- MD5 | 18 +++---- NEWS.md | 6 ++ R/auxiliary_functions.R | 123 ++++++++++++++++++++++++++++++++++++------------ R/cp2sc.R | 10 +++ R/sc2cp.R | 12 +++- R/sc2sc.R | 14 +++-- man/cp2sc.Rd | 5 + man/sc2cp.Rd | 7 +- man/sc2sc.Rd | 6 +- 10 files changed, 152 insertions(+), 55 deletions(-)
Title: Log-Concave Density Estimation in Arbitrary Dimensions
Description: Software for computing a log-concave (maximum likelihood) estimator for independent and identically distributed data in any number of dimensions. For a detailed description of the method see Cule, Samworth and Stewart (2010, Journal of Royal Statistical Society Series B, <doi:10.1111/j.1467-9868.2010.00753.x>).
Author: Madeleine Cule [aut],
Robert Gramacy [aut],
Richard Samworth [aut],
Yining Chen [aut, cre],
Lutz Duembgen [ctb] ,
Vikneswaran Gopal [ctb] ,
George Casella [ctb] ,
C. Bradford Barber [cph] ,
The Geometry Center [cph],
Kai Habel [cph] ,
Raoul Grasman [ [...truncated...]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between LogConcDEAD versions 1.6-11 dated 2025-03-11 and 1.6-12 dated 2025-03-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 1 + inst/doc/LogConcDEAD.pdf |binary src/qset.h | 6 +----- 5 files changed, 10 insertions(+), 13 deletions(-)
Title: Structured Messages and Options
Description: Provides a structured framework for consistent user
communication and configuration management for package developers.
Author: Aksel Thomsen [aut, cre],
Mathias Lerbech Jeppesen [aut],
Cervan Girard [aut],
Kristian Troejelsgaard [aut],
Lovemore Gakava [aut],
Steffen Falgreen Larsen [aut],
Vladimir Obucina [aut],
Novo Nordisk A/S [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between zephyr versions 0.1.1 dated 2025-01-28 and 0.1.2 dated 2025-03-13
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------ NEWS.md | 5 +++ R/msg.R | 2 - R/options.R | 8 ++++- R/utils.R | 10 ++++--- tests/testthat/_snaps/options.md | 54 +++++++++++++++++++------------------- tests/testthat/test-integration.R | 11 +++++++ tests/testthat/test-options.R | 46 +++++++++++--------------------- tests/testthat/test-utils.R | 2 - 10 files changed, 84 insertions(+), 78 deletions(-)
Title: Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Description: The Poverty Probability Index (PPI) is a poverty measurement tool
for organizations and businesses with a mission to serve the poor. The PPI
is statistically-sound, yet simple to use: the answers to 10 questions about
a household's characteristics and asset ownership are scored to compute the
likelihood that the household is living below the poverty line - or above by
only a narrow margin. This package contains country-specific lookup data
tables used as reference to determine the poverty likelihood of a household
based on their score from the country-specific PPI questionnaire. These
lookup tables have been extracted from documentation of the PPI found at
<https://www.povertyindex.org> and managed by Innovations for Poverty Action
<https://poverty-action.org/>.
Author: Ernest Guevarra [aut, cre]
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between ppitables versions 0.5.5 dated 2024-04-12 and 0.6.0 dated 2025-03-13
DESCRIPTION | 24 +- MD5 | 43 +++ NEWS.md | 36 ++- R/00_colombia.R |only R/00_dominican_republic.R |only R/00_kenya.R |only R/00_mexico.R |only R/00_mozambique.R |only R/00_peru.R |only R/04_data.R | 49 ---- R/sysdata.rda |binary README.md | 503 ++++++++++++++++++++-------------------------- build |only data/ppiCOL2024.rda |only data/ppiDOM2024.rda |only data/ppiKEN2024.rda |only data/ppiMEX2024.rda |only data/ppiMOZ2024.rda |only data/ppiPER2024.rda |only inst/CITATION | 13 + inst/WORDLIST | 21 + inst/doc |only man/ppiCOL2024.Rd |only man/ppiDOM2024.Rd |only man/ppiKEN2024.Rd |only man/ppiMEX2024.Rd |only man/ppiMOZ2019.Rd | 5 man/ppiMOZ2024.Rd |only man/ppiPER2024.Rd |only vignettes |only 30 files changed, 338 insertions(+), 356 deletions(-)
Title: Collection of Functions for Working with Age Intervals
Description: Provides a collection of efficient functions for working with
individual ages and corresponding intervals. These include functions for
conversion from an age to an interval, aggregation of ages with associated
counts in to intervals and the splitting of interval counts based on
specified age distributions.
Author: Tim Taylor [aut, cre, cph] ,
Edwin van Leeuwen [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ageutils versions 0.0.7 dated 2024-12-06 and 0.0.8 dated 2025-03-13
ageutils-0.0.7/ageutils/R/deprecated.R |only ageutils-0.0.7/ageutils/man/ageutils-deprecated.Rd |only ageutils-0.0.7/ageutils/man/aggregate_age_counts-deprecated.Rd |only ageutils-0.0.7/ageutils/man/reaggregate_interval_counts-deprecated.Rd |only ageutils-0.0.7/ageutils/man/reaggregate_interval_rates-deprecated.Rd |only ageutils-0.0.7/ageutils/man/split_interval_counts-deprecated.Rd |only ageutils-0.0.7/ageutils/src |only ageutils-0.0.7/ageutils/tests/testthat/_snaps/deprecated-functions.md |only ageutils-0.0.7/ageutils/tests/testthat/test-deprecated-functions.R |only ageutils-0.0.8/ageutils/DESCRIPTION | 10 ageutils-0.0.8/ageutils/MD5 | 43 +- ageutils-0.0.8/ageutils/NAMESPACE | 2 ageutils-0.0.8/ageutils/NEWS.md | 15 ageutils-0.0.8/ageutils/R/ageutils-package.R | 4 ageutils-0.0.8/ageutils/R/breaks_to_interval.R | 17 - ageutils-0.0.8/ageutils/R/cut_ages.R | 20 - ageutils-0.0.8/ageutils/R/defunct.R |only ageutils-0.0.8/ageutils/R/reaggregate_counts.R | 50 +- ageutils-0.0.8/ageutils/R/reaggregate_rates.R | 47 +- ageutils-0.0.8/ageutils/man/ageutils-defunct.Rd |only ageutils-0.0.8/ageutils/man/breaks_to_interval.Rd | 6 ageutils-0.0.8/ageutils/man/cut_ages.Rd | 4 ageutils-0.0.8/ageutils/man/reaggregate_counts.Rd | 2 ageutils-0.0.8/ageutils/tests/testthat/_snaps/defunct-functions.md |only ageutils-0.0.8/ageutils/tests/testthat/_snaps/reaggregate_counts.md |only ageutils-0.0.8/ageutils/tests/testthat/test-defunct-functions.R |only ageutils-0.0.8/ageutils/tests/testthat/test-reaggregate_counts.R | 167 ++++++---- 27 files changed, 214 insertions(+), 173 deletions(-)
Title: Formatted Survey Estimates
Description: Short and understandable commands that generate tabulated,
formatted, and rounded survey estimates. Mostly a wrapper for the
'survey' package (Lumley (2004) <doi:10.18637/jss.v009.i08>
<https://CRAN.R-project.org/package=survey>) that identifies
low-precision estimates using the National Center for Health
Statistics (NCHS) presentation standards (Parker et al. (2017)
<https://www.cdc.gov/nchs/data/series/sr_02/sr02_175.pdf>,
Parker et al. (2023) <doi:10.15620/cdc:124368>).
Author: Alex Strashny [aut, cre]
Maintainer: Alex Strashny <alex.strashny@gmail.com>
Diff between surveytable versions 0.9.5 dated 2024-10-09 and 0.9.6 dated 2025-03-13
DESCRIPTION | 14 MD5 | 104 NAMESPACE | 17 NEWS.md | 11 R/deprecated.R | 74 R/print.surveytable_table.R | 215 R/set_opts.R | 385 R/set_survey.R | 214 R/show_options.R | 34 R/surveytable.R | 208 R/svyciprop_adjusted.R | 166 R/tab.R | 6 R/tab_cross.R | 54 R/tab_rate.R | 2 R/tab_subset_rate.R | 2 R/total_rate.R | 2 R/var_cross.R | 102 R/var_cut.R | 76 R/z_data.R | 2 R/z_print_auto.R |only R/z_print_gt.R |only R/z_print_huxtable.R |only R/z_print_kableExtra.R |only R/z_utils.R | 78 R/zzz.R | 161 README.md | 233 build/vignette.rds |binary inst/CITATION | 16 inst/WORDLIST | 1 inst/doc/Advanced-topics.Rmd | 199 inst/doc/Advanced-topics.html | 327 inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.R | 2 inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.Rmd | 530 inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.html | 6182 ++++----- inst/doc/Example-Residential-Care-Community-Services-User-NSLTCP-RCC-SU-report.R | 2 inst/doc/Example-Residential-Care-Community-Services-User-NSLTCP-RCC-SU-report.Rmd | 454 inst/doc/Example-Residential-Care-Community-Services-User-NSLTCP-RCC-SU-report.html | 3452 ++--- inst/doc/Printing-HTML.R |only inst/doc/Printing-HTML.Rmd |only inst/doc/Printing-HTML.html |only inst/doc/Printing-PDF.R |only inst/doc/Printing-PDF.Rmd |only inst/doc/Printing-PDF.pdf |only inst/doc/surveytable.Rmd | 2 inst/doc/surveytable.html | 6792 +++++----- man/deprecated.Rd | 46 man/print.surveytable_table.Rd | 35 man/rccsu2018.Rd | 46 man/set_opts.Rd | 159 man/surveytable-options.Rd | 234 man/surveytable-package.Rd | 46 man/svyciprop_adjusted.Rd | 100 man/var_cut.Rd | 90 vignettes/Advanced-topics.Rmd | 199 vignettes/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.Rmd | 530 vignettes/Example-Residential-Care-Community-Services-User-NSLTCP-RCC-SU-report.Rmd | 454 vignettes/Printing-HTML.Rmd |only vignettes/Printing-PDF.Rmd |only vignettes/surveytable.Rmd | 2 59 files changed, 11230 insertions(+), 10830 deletions(-)
Title: Useful Tools for Structural Equation Modeling
Description: Provides miscellaneous tools for structural equation modeling,
many of which extend the 'lavaan' package. For example, latent
interactions can be estimated using product indicators (Lin et al.,
2010, <doi:10.1080/10705511.2010.488999>) and simple effects probed;
analytical power analyses can be conducted (Jak et al., 2021,
<doi:10.3758/s13428-020-01479-0>); and scale reliability
can be estimated based on estimated factor-model parameters.
Author: Terrence D. Jorgensen [aut, cre]
,
Sunthud Pornprasertmanit [aut],
Alexander M. Schoemann [aut] ,
Yves Rosseel [aut] ,
Patrick Miller [ctb],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb]
,
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Pr [...truncated...]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between semTools versions 0.5-6 dated 2022-05-10 and 0.5-7 dated 2025-03-13
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Title: Random Forests, Linear Trees, and Gradient Boosting for
Inference and Interpretability
Description: Provides fast implementations of Random Forests,
Gradient Boosting, and Linear Random Forests, with an emphasis on inference
and interpretability. Additionally contains methods for variable
importance, out-of-bag prediction, regression monotonicity, and
several methods for missing data imputation.
Author: Soeren Kuenzel [aut],
Theo Saarinen [aut, cre],
Simon Walter [aut],
Sam Antonyan [aut],
Edward Liu [aut],
Allen Tang [aut],
Jasjeet Sekhon [aut]
Maintainer: Theo Saarinen <theo_s@berkeley.edu>
Diff between Rforestry versions 0.10.0 dated 2023-03-24 and 0.11.0.0 dated 2025-03-13
Rforestry-0.10.0/Rforestry/man/predictInfo-forestry.Rd |only Rforestry-0.10.0/Rforestry/man/scale_center.Rd |only Rforestry-0.10.0/Rforestry/man/unscale_uncenter.Rd |only Rforestry-0.10.0/Rforestry/src/dataFrame.cpp |only Rforestry-0.10.0/Rforestry/src/dataFrame.h |only Rforestry-0.10.0/Rforestry/src/sampling.cpp |only Rforestry-0.10.0/Rforestry/src/sampling.h |only Rforestry-0.10.0/Rforestry/tests/testthat/test-ExactPredict.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-LeftRightNaSplitting.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-OOBhonesty.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-OOBhonestyVersions.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-PureNoiseExample.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-advancedCustomSampling.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-aggregationWeights.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-alternateVI.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-coefs.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-customSample.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-differentAggregations.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-doubleBootstrap.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-exactOOBpredict.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-getOOBpred_feature.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-groupSampling.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-groups.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-hold_out_idx.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-monotoneAvg.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-naDirection.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-nodesizeStrictAvg.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-plottree.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-predictInfo.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-scale.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-smallOutcomeMissingness.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-splitratioHonesty.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-trainingIdx.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-treeCounts.R |only Rforestry-0.10.0/Rforestry/tests/testthat/test-weightMatrixFlag.R |only Rforestry-0.11.0.0/Rforestry/DESCRIPTION | 15 Rforestry-0.11.0.0/Rforestry/LICENSE |only Rforestry-0.11.0.0/Rforestry/MD5 | 166 Rforestry-0.11.0.0/Rforestry/NAMESPACE | 11 Rforestry-0.11.0.0/Rforestry/R/R_preprocessing.R | 61 Rforestry-0.11.0.0/Rforestry/R/RcppExports.R | 48 Rforestry-0.11.0.0/Rforestry/R/backwards_compatible.R | 9 Rforestry-0.11.0.0/Rforestry/R/compute_rf_lp.R | 103 Rforestry-0.11.0.0/Rforestry/R/forestry.R | 2055 ++++------ Rforestry-0.11.0.0/Rforestry/R/neighborhood_imputation.R | 34 Rforestry-0.11.0.0/Rforestry/R/plottree.R | 116 Rforestry-0.11.0.0/Rforestry/README.md |only Rforestry-0.11.0.0/Rforestry/man/autoforestry-forestry.Rd |only Rforestry-0.11.0.0/Rforestry/man/autohonestRF.Rd |only Rforestry-0.11.0.0/Rforestry/man/compute_lp-forestry.Rd | 37 Rforestry-0.11.0.0/Rforestry/man/forest_checker.Rd | 3 Rforestry-0.11.0.0/Rforestry/man/forestry.Rd | 274 - 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Title: Handling Missing Data in Stochastic Block Models
Description: When a network is partially observed (here, NAs in the adjacency matrix rather than 1 or 0
due to missing information between node pairs), it is possible to account for the underlying process
that generates those NAs. 'missSBM', presented in 'Barbillon, Chiquet and Tabouy' (2022) <doi:10.18637/jss.v101.i12>,
adjusts the popular stochastic block model from network data sampled under various missing data conditions,
as described in 'Tabouy, Barbillon and Chiquet' (2019) <doi:10.1080/01621459.2018.1562934>.
Author: Julien Chiquet [aut, cre] ,
Pierre Barbillon [aut] ,
Timothee Tabouy [aut],
Jean-Benoist Leger [ctb] ,
Francois Gindraud [ctb] ,
grossBM team [ctb]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between missSBM versions 1.0.4 dated 2023-10-24 and 1.0.5 dated 2025-03-13
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ NEWS.md | 4 +++ build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/case_study_war_networks.html | 41 ++++++++++++++-------------------- src/nlopt_wrapper.cpp | 1 8 files changed, 34 insertions(+), 35 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: A unified interface to interact with various Large Language Model (LLM) APIs such as 'OpenAI' (see <https://platform.openai.com/docs/overview> for details), 'Anthropic' (see <https://docs.anthropic.com/en/api/getting-started> for details), 'Groq' (see <https://console.groq.com/docs/api-reference> for details), 'Together AI' (see <https://docs.together.ai/docs/quickstart> for details), 'DeepSeek' (see <https://api-docs.deepseek.com> for details), 'Gemini' (see <https://aistudio.google.com> for details), and 'Voyage AI' (see <https://docs.voyageai.com/docs/introduction> for details). Allows users to configure API parameters, send messages, and retrieve responses seamlessly within R.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.2.1 dated 2025-02-11 and 0.2.3 dated 2025-03-13
DESCRIPTION | 8 MD5 | 20 R/LLMR.R | 75 ++ R/Zagent.R | 1272 ++++++++++++++++++++++++++++++++++++++---------- README.md | 93 +++ man/Agent.Rd | 218 +++----- man/AgentAction.Rd | 11 man/LLMConversation.Rd | 89 ++- man/call_llm.Rd | 65 ++ man/llm_config.Rd | 52 + man/parse_embeddings.Rd | 25 11 files changed, 1469 insertions(+), 459 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre]
,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 6.3.2 dated 2025-01-07 and 6.4.0 dated 2025-03-13
DESCRIPTION | 10 MD5 | 57 - NAMESPACE | 1 NEWS.md | 30 R/RcppExports.R | 293 +++--- R/matrixcreation.R | 11 build/vignette.rds |binary inst/doc/Chapter1.Rmd | 13 inst/doc/Chapter1.html | 40 inst/include/basic_funcs/main_utils.h | 653 ++++++++++---- inst/include/basic_funcs/mat_stuff.h | 1357 ++++++++++++++++++++++++----- man/append_lP.Rd | 2 man/beverton3.Rd | 2 man/cycle_check.Rd |only man/lefko3-package.Rd | 2 man/logistic3.Rd | 2 man/ricker3.Rd | 2 man/summary.lefkoMat.Rd | 8 man/supplemental.Rd | 39 man/usher3.Rd | 2 src/DataManagement.cpp | 10 src/ErrorChecks.cpp | 15 src/ExtraFunctions.cpp | 18 src/Mats2.cpp | 423 +++++++++ src/MatsNProj.cpp | 1559 +++++++++------------------------- src/ModelSelection.cpp | 22 src/PopChar.cpp | 160 ++- src/PopDyn2.cpp | 44 src/RcppExports.cpp | 74 - vignettes/Chapter1.Rmd | 13 30 files changed, 3005 insertions(+), 1857 deletions(-)
Title: Fast Algorithms for Generalized Principal Component Analysis
Description: Implements fast, scalable optimization algorithms for
fitting generalized principal components analysis (GLM-PCA) models,
as described in "A Generalization of Principal Components
Analysis to the Exponential Family" Collins M, Dasgupta S, Schapire RE
(2002, ISBN:9780262271738), and subsequently "Feature Selection
and Dimension Reduction for Single-Cell RNA-Seq Based on a Multinomial
Model" Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019)
<doi:10.1186/s13059-019-1861-6>.
Author: Eric Weine [aut, cre],
Peter Carbonetto [aut],
Matthew Stephens [aut]
Maintainer: Eric Weine <ericweine15@gmail.com>
Diff between fastglmpca versions 0.1-107 dated 2025-03-10 and 0.1-108 dated 2025-03-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/intro_fastglmpca.html | 6 +++--- tests/testthat/test_fit_glmpca_pois.R | 2 +- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Designing Cluster-Randomized Trials with Two Continuous
Co-Primary Outcomes
Description: Provides methods for powering cluster-randomized trials with two continuous co-primary outcomes using five key design techniques. Includes functions for calculating required sample size and statistical power. For more details on methodology, see Owen et al. (2025) <doi:10.1002/sim.70015>, Yang et al. (2022) <doi:10.1111/biom.13692>, Pocock et al. (1987) <doi:10.2307/2531989>, Vickerstaff et al. (2019) <doi:10.1186/s12874-019-0754-4>, and Li et al. (2020) <doi:10.1111/biom.13212>.
Author: Melody Owen [aut, cre]
Maintainer: Melody Owen <melody.owen@yale.edu>
Diff between crt2power versions 1.1.0 dated 2024-09-23 and 1.2.0 dated 2025-03-13
DESCRIPTION | 13 MD5 | 45 +-- R/calc_pwr_comb_outcome.R | 186 ++++++++++--- R/calc_pwr_conj_test.R | 168 +++++++++--- R/calc_pwr_disj_2dftest.R | 2 R/calc_pwr_pval_adj.R | 275 +++++++++++++++---- R/calc_pwr_single_1dftest.R | 190 +++++++++++-- R/globals.R |only R/run_crt2_design.R | 405 +++++++++++++++++++---------- README.md | 13 man/calc_K_comb_outcome.Rd | 3 man/calc_K_conj_test.Rd | 7 man/calc_K_pval_adj.Rd | 3 man/calc_K_single_1dftest.Rd | 3 man/calc_m_comb_outcome.Rd | 3 man/calc_m_conj_test.Rd | 7 man/calc_m_pval_adj.Rd | 3 man/calc_m_single_1dftest.Rd | 3 man/calc_pwr_conj_test.Rd | 7 tests/testthat/test-comb_outcome.R | 243 ++++++++++++++++- tests/testthat/test-conj_test.R | 229 +++++++++++++++- tests/testthat/test-disj_2dftest.R | 225 ++++++++++++++-- tests/testthat/test-pval_adj.R | 483 +++++++++++++++++++++++++++-------- tests/testthat/test-single_1dftest.R | 226 ++++++++++++++-- 24 files changed, 2212 insertions(+), 530 deletions(-)
Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 1.0.1 dated 2025-02-12 and 1.1.0 dated 2025-03-13
DESCRIPTION | 6 MD5 | 58 - NAMESPACE | 6 NEWS.md | 12 R/cpp11.R | 48 + R/extras.R | 6 R/factors.R | 2 R/if_else.R | 2 R/lists.R | 2 R/overview.R | 16 R/sset.R | 193 ----- R/sset_df.R |only R/utils.R | 32 README.md | 134 +-- inst |only man/sset.Rd | 34 man/sset_df.Rd |only src/api.cpp |only src/attrs.cpp | 9 src/cheapr.h | 45 + src/cpp11.cpp | 99 ++ src/gcd.cpp | 6 src/int64.cpp | 4 src/lag.cpp | 5 src/lists.cpp | 55 - src/nas.cpp | 38 - src/scalars.cpp | 9 src/sequences.cpp | 33 src/sset.cpp | 1326 ++++++++++++++++++++++++++++---------- src/utils.cpp | 257 +------ src/which.cpp | 4 tests/testthat/_snaps/overview.md | 386 +++++------ 32 files changed, 1675 insertions(+), 1152 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-25 2.1.6
2024-07-26 2.1.3