Title: A Stochastic Weather Generator with Seasonality
Description: A weather generator to simulate precipitation and temperature for regions with seasonality. Users input training data containing precipitation, temperature, and seasonality (up to 26 seasons). Including weather season as a training variable allows users to explore the effects of potential changes in season duration as well as average start- and end-time dates due to phenomena like climate change. Data for training should be a single time series but can originate from station data, basin averages, grid cells, etc.
Bearup, L., Gangopadhyay, S., & Mikkelson, K. (2021). "Hydroclimate Analysis Lower Santa Cruz River Basin Study (Technical Memorandum No ENV-2020-056)." Bureau of Reclamation.
Gangopadhyay, S., Bearup, L. A., Verdin, A., Pruitt, T., Halper, E., & Shamir, E. (2019, December 1). "A collaborative stochastic weather generator for climate impacts assessment in the Lower Santa Cruz River Basin, Arizona." Fall Meeting 2019, American Geophysical Union. <https://ui.adsabs.ha [...truncated...]
Author: Subhrendu Gangopadhyay [aut],
Lindsay Bearup [aut],
David Woodson [aut, cre],
Marketa McGuire [aut],
Andrew Verdin [aut],
Eylon Shamir [aut],
Eve Halper [aut]
Maintainer: David Woodson <dwoodson@usbr.gov>
Diff between wxgenR versions 1.4.2 dated 2024-11-01 and 1.4.3 dated 2025-03-14
DESCRIPTION | 14 MD5 | 39 NAMESPACE | 1 R/simPamt.R | 10 R/wx.R | 12 R/wxgenR.R | 10 build/vignette.rds |binary data/BlacksburgVA.rda |binary data/LowerSantaCruzRiverBasinAZ.rda |binary data/stationData.rda |binary inst/doc/Vignette_BlacksburgVA.R | 162 - inst/doc/Vignette_BlacksburgVA.Rmd | 148 - inst/doc/Vignette_BlacksburgVA.html | 1722 ++++++++--------- inst/doc/Vignette_LowerSantaCruzRiverBasinAZ.R | 157 - inst/doc/Vignette_LowerSantaCruzRiverBasinAZ.Rmd | 141 - inst/doc/Vignette_LowerSantaCruzRiverBasinAZ.html | 2122 +++++++++++----------- man/wx.Rd | 9 man/wxgenR-package.Rd |only man/wxgenR.Rd | 6 vignettes/Vignette_BlacksburgVA.Rmd | 148 - vignettes/Vignette_LowerSantaCruzRiverBasinAZ.Rmd | 141 - 21 files changed, 2473 insertions(+), 2369 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 version 6
and up or NodeJS when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 6.0.1 dated 2025-02-02 and 6.0.2 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ build/partial.rdb |binary inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 6 +++--- tools/winlibs.R | 6 +++--- 7 files changed, 20 insertions(+), 17 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko [aut, cre] ,
Nick Bearman [rev]
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.12.3 dated 2024-11-26 and 1.12.6 dated 2025-03-14
DESCRIPTION | 10 ++++++---- LICENSE | 2 +- MD5 | 25 +++++++++++++------------ NAMESPACE | 2 ++ NEWS.md | 12 ++++++++++++ R/helpers.R | 2 ++ R/internals.R | 19 +++++++++++++++++-- R/katastry.R | 6 +++--- build/partial.rdb |binary build/vignette.rds |binary man/dot-rhome_state.Rd |only man/katastry.Rd | 6 +++--- tests/testthat/test-2-code-internal.R | 16 ++++++++++++++-- tests/testthat/test-2-code-public.R | 4 ++++ 14 files changed, 77 insertions(+), 27 deletions(-)
Title: Genetic Analysis of Pooled Samples
Description: Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010 [...truncated...]
Author: Kathleen Kuesters [aut, cre, cph]
,
Jeffrey Long [aut],
Jessica Blanton [aut],
Walter Blank [ctb],
Jeffrey Kovach [ctb],
Ronald Blanton [ctb]
Maintainer: Kathleen Kuesters <kathleen.kuesters@gmail.com>
Diff between pooledpeaks versions 1.1.0 dated 2025-02-01 and 1.1.1 dated 2025-03-14
DESCRIPTION | 6 - MD5 | 20 ++- NEWS.md | 2 README.md | 101 +++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CODE_OF_CONDUCT.md |only inst/CONTRIBUTING.md |only inst/doc/workflow.R | 46 ++++---- inst/doc/workflow.Rmd | 261 +++++++++++++++++++++++++----------------------- inst/doc/workflow.html | 197 ++++++++++++++++++------------------ vignettes/workflow.Rmd | 261 +++++++++++++++++++++++++----------------------- 12 files changed, 489 insertions(+), 405 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables on the open unit interval (0, 1),
e.g., rates and proportions, see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>.
Moreover, extended-support beta regression models can accommodate dependent variables with
boundary observations at 0 and/or 1. For the classical beta regression model, alternative specifications are
provided: Bias-corrected and bias-reduced estimation, finite mixture models, and recursive partitioning for
beta regression, see Grün, Kosmidis, and Zeileis (2012) <doi:10.18637/jss.v048.i11>.
Author: Achim Zeileis [aut, cre] ,
Francisco Cribari-Neto [aut] ,
Bettina Gruen [aut] ,
Ioannis Kosmidis [aut] ,
Alexandre B. Simas [ctb] ,
Andrea V. Rocha [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.2-1 dated 2024-09-12 and 3.2-2 dated 2025-03-14
DESCRIPTION | 12 +- MD5 | 26 +++--- NAMESPACE | 4 NEWS.md | 14 +++ R/bamlss.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/betareg-ext.R | 80 +++++++++++++------ inst/doc/betareg-ext.qmd | 80 +++++++++++++------ inst/doc/betareg.R | 86 +++++++++++++------- inst/doc/betareg.qmd | 86 +++++++++++++------- man/betar_family.Rd |only tests/Examples/betareg-Ex.Rout.save | 150 +++++++++++++++++++++++++++++++++++- vignettes/betareg-ext.qmd | 80 +++++++++++++------ vignettes/betareg.qmd | 86 +++++++++++++------- 15 files changed, 522 insertions(+), 182 deletions(-)
Title: Deal with Dependencies
Description: Manage dependencies during package development. This can
retrieve all dependencies that are used in ".R" files in the "R/"
directory, in ".Rmd" files in "vignettes/" directory and in 'roxygen2'
documentation of functions. There is a function to update the
"DESCRIPTION" file of your package with 'CRAN' packages or any other
remote package. All functions to retrieve dependencies of ".R"
scripts and ".Rmd" or ".qmd" files can be used independently of a
package development.
Author: Vincent Guyader [cre, aut] ,
Sebastien Rochette [aut] ,
Murielle Delmotte [aut] ,
Swann Floc'hlay [aut] ,
ThinkR [cph, fnd]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between attachment versions 0.4.4 dated 2025-02-08 and 0.4.5 dated 2025-03-14
DESCRIPTION | 6 MD5 | 41 - NEWS.md | 6 R/add_from_examples.R | 4 R/set_remotes.R | 8 README.md | 4 build/vignette.rds |binary inst/doc/a-fill-pkg-description.R | 192 ++--- inst/doc/a-fill-pkg-description.html | 1166 ++++++++++++++++---------------- inst/doc/b-bookdown-and-scripts.R | 102 +- inst/doc/b-bookdown-and-scripts.html | 954 +++++++++++++------------- inst/doc/create-dependencies-file.R | 68 - inst/doc/create-dependencies-file.html | 826 +++++++++++----------- inst/doc/use_renv.R | 40 - inst/doc/use_renv.html | 784 ++++++++++----------- man/find_remotes.Rd | 4 man/set_remotes_to_desc.Rd | 4 tests/testthat/f1Rmd | 174 ++-- tests/testthat/f2R | 96 +- tests/testthat/fake_function.R |only tests/testthat/fake_namespace | 12 tests/testthat/test-att_from_examples.R | 42 + 22 files changed, 2293 insertions(+), 2240 deletions(-)
Title: Parse XML
Description: Bindings to 'libxml2' for working with XML data using a simple,
consistent interface based on 'XPath' expressions. Also supports XML schema
validation; for 'XSLT' transformations see the 'xslt' package.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Jeroen Ooms [aut, cre],
Posit Software, PBC [cph, fnd],
R Foundation [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xml2 versions 1.3.7 dated 2025-02-28 and 1.3.8 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 8 ++++++++ R/xml_namespaces.R | 2 +- build/partial.rdb |binary inst/doc/modification.html | 12 ++++++------ src/Makevars.in | 3 ++- src/Makevars.win | 6 +++--- src/init.c | 4 ++-- src/xml2_utils.h | 2 +- tools/winlibs.R | 21 ++++++++++++++++----- 11 files changed, 52 insertions(+), 32 deletions(-)
Title: An R Interface to the Onigmo Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Onigmo library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden [cre, aut] ,
K Kosako [aut],
K Takata [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.7.4.1 dated 2023-12-04 and 1.7.5.1 dated 2025-03-14
DESCRIPTION | 20 ++++++++---- LICENCE | 2 - MD5 | 18 ++++++----- NEWS | 16 ++++++++++ R/zzz.R | 14 ++++++++ README.md | 86 ++++++++++++++++++++++++++++++++++++------------------ data |only man/glass.Rd |only man/ore_search.Rd | 3 + src/compile.c | 1 src/match.c | 37 ++++++++++++++++++----- 11 files changed, 144 insertions(+), 53 deletions(-)
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Infrastructure for working with censored or truncated normal, logistic,
and Student-t distributions, i.e., d/p/q/r functions and distributions3
objects.
Author: Achim Zeileis [aut, cre] ,
Jakob W. Messner [aut] ,
Reto Stauffer [aut] ,
Ioannis Kosmidis [ctb] ,
Georg J. Mayr [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between crch versions 1.2-1 dated 2024-09-16 and 1.2-2 dated 2025-03-14
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/crch.R | 8 +++++--- inst/doc/crch.qmd | 8 +++++--- man/crch.Rd | 6 ++++-- vignettes/crch.qmd | 8 +++++--- 9 files changed, 37 insertions(+), 23 deletions(-)
Title: Sweave Drivers with Extra Tricks Up their Sleeve
Description: Weave and tangle drivers for Sweave extending the
standard drivers. RweaveExtraLatex and RtangleExtra provide options
to completely ignore code chunks on weaving, tangling, or both.
Chunks ignored on weaving are not parsed, yet are written out
verbatim on tangling. Chunks ignored on tangling may be evaluated as
usual on weaving, but are completely left out of the tangled
scripts. The driver RtangleExtra also provides options to control
the separation between code chunks in the tangled script, and to
specify the extension of the file name (or remove it entirely) when
splitting is selected.
Author: Vincent Goulet [cre, aut],
R Core Team [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between RweaveExtra versions 1.1-0 dated 2024-02-20 and 1.2-0 dated 2025-03-14
DESCRIPTION | 15 ++++++++------- MD5 | 28 ++++++++++++++++++---------- NAMESPACE | 2 +- R/RweaveExtra.R | 33 +++++++++++++++++++++++++-------- R/SweaveGetSourceName.R |only build/partial.rdb |binary inst/NEWS.Rd | 23 ++++++++++++++++++++++- inst/examples/auto |only inst/examples/example-extra.Rnw | 8 +++++++- inst/examples/example-source.Rnw |only inst/po |only man/RtangleExtra.Rd | 35 ++++++++++++++++++++++++++++------- man/RweaveExtra-package.Rd | 12 +++++++----- man/RweaveExtraLatex.Rd | 11 +++-------- man/RweaveExtraUtils.Rd | 4 ++-- man/SweaveGetSourceName.Rd |only po |only 17 files changed, 121 insertions(+), 50 deletions(-)
Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Description: Operations on triangular meshes based on 'VCGLIB'. This package
integrates nicely with the R-package 'rgl' to render the meshes processed by
'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL license,
and it is the base of most of the software tools of the Visual Computing Lab of
the Italian National Research Council Institute ISTI <https://vcg.isti.cnr.it/>,
like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk
<https://github.com/cnr-isti-vclab/vcglib> and patched to work with options
determined by the configure script as well as to work with the header files
included by 'RcppEigen'.
Author: Stefan Schlager [aut, cre, cph],
Girinon Francois [ctb],
Tim Schaefer [ctb],
Zhengjia Wang [ctb]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Rvcg versions 0.24 dated 2024-09-20 and 0.25 dated 2025-03-14
DESCRIPTION | 8 +++--- MD5 | 15 ++++++------ NAMESPACE | 1 R/Rvcg-package.R | 4 +-- R/vcgRaySearch.r | 52 +++++++++++++++++++++++++++++++++++++++++++++ man/Rvcg-package.Rd | 4 +-- man/raysearchMulti.Rd |only src/Makevars | 4 +-- src/vcglib/wrap/callback.h | 34 ++++++++++++++--------------- 9 files changed, 88 insertions(+), 34 deletions(-)
Title: Batch Processing for Chat Models
Description: Batch processing framework for 'ellmer' chat model interactions.
Enables sequential and parallel processing of chat completions.
Core capabilities include error handling with backoff, state persistence,
progress tracking, and retry management.
Parallel processing is implemented via the 'future' framework.
Additional features include structured data extraction, tool integration,
timeout handling, verbosity control, and sound notifications.
Includes methods for returning chat texts, chat objects, progress status,
and structured data.
Author: Dylan Pieper [aut, cre]
Maintainer: Dylan Pieper <dylanpieper@gmail.com>
Diff between hellmer versions 0.1.0 dated 2025-03-07 and 0.1.1 dated 2025-03-14
hellmer-0.1.0/hellmer/man/figures/hellmer-tidyllm.png |only hellmer-0.1.0/hellmer/man/progress.batch.Rd |only hellmer-0.1.0/hellmer/man/structured_data.Rd |only hellmer-0.1.0/hellmer/man/structured_data.batch.Rd |only hellmer-0.1.0/hellmer/man/texts.batch.Rd |only hellmer-0.1.1/hellmer/DESCRIPTION | 9 hellmer-0.1.1/hellmer/MD5 | 50 +-- hellmer-0.1.1/hellmer/NAMESPACE | 2 hellmer-0.1.1/hellmer/NEWS.md | 8 hellmer-0.1.1/hellmer/R/classes.R | 82 +---- hellmer-0.1.1/hellmer/R/hellmer-core.R | 187 +++++++++--- hellmer-0.1.1/hellmer/R/hellmer.R | 44 +- hellmer-0.1.1/hellmer/R/import.R | 3 hellmer-0.1.1/hellmer/README.md | 163 +++++++--- hellmer-0.1.1/hellmer/man/batch.Rd | 6 hellmer-0.1.1/hellmer/man/capture.Rd | 4 hellmer-0.1.1/hellmer/man/capture_with_retry.Rd | 5 hellmer-0.1.1/hellmer/man/chat_future.Rd | 11 hellmer-0.1.1/hellmer/man/chat_sequential.Rd | 9 hellmer-0.1.1/hellmer/man/chats.Rd | 6 hellmer-0.1.1/hellmer/man/hellmer-package.Rd | 2 hellmer-0.1.1/hellmer/man/process.Rd | 17 - hellmer-0.1.1/hellmer/man/process_chunks.Rd | 29 + hellmer-0.1.1/hellmer/man/process_future.Rd | 25 - hellmer-0.1.1/hellmer/man/process_judgements.Rd |only hellmer-0.1.1/hellmer/man/texts.Rd | 6 hellmer-0.1.1/hellmer/tests/testthat/setup.R | 6 hellmer-0.1.1/hellmer/tests/testthat/test-chat-future.R | 61 ++- hellmer-0.1.1/hellmer/tests/testthat/test-chat-sequential.R | 65 ++-- 29 files changed, 516 insertions(+), 284 deletions(-)
Title: 'Amazon Web Services' Storage Services
Description: Interface to 'Amazon Web Services' storage services,
including 'Simple Storage Service' ('S3') and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.storage versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 12 MD5 | 146 ++- NAMESPACE | 1 R/fsx_interfaces.R | 2 R/fsx_operations.R | 20 R/s3_custom.R | 17 R/s3_interfaces.R | 4 R/s3_operations.R | 545 ++++++------- R/s3_service.R | 2 R/s3tables_interfaces.R |only R/s3tables_operations.R |only R/s3tables_service.R |only R/storagegateway_interfaces.R | 60 + R/storagegateway_operations.R | 194 ++++ R/storagegateway_service.R | 7 man/fsx_cancel_data_repository_task.Rd | 2 man/fsx_create_file_system_from_backup.Rd | 11 man/fsx_update_file_system.Rd | 7 man/s3_abort_multipart_upload.Rd | 14 man/s3_complete_multipart_upload.Rd | 32 man/s3_copy_object.Rd | 45 - man/s3_create_multipart_upload.Rd | 38 man/s3_create_session.Rd | 6 man/s3_delete_object.Rd | 16 man/s3_delete_object_tagging.Rd | 12 man/s3_delete_objects.Rd | 24 man/s3_get_object.Rd | 22 man/s3_get_object_attributes.Rd | 14 man/s3_get_object_tagging.Rd | 12 man/s3_head_bucket.Rd | 14 man/s3_head_object.Rd | 14 man/s3_list_multipart_uploads.Rd | 14 man/s3_list_objects.Rd | 14 man/s3_list_objects_v2.Rd | 14 man/s3_list_parts.Rd | 14 man/s3_put_bucket_accelerate_configuration.Rd | 2 man/s3_put_bucket_acl.Rd | 2 man/s3_put_bucket_cors.Rd | 2 man/s3_put_bucket_encryption.Rd | 2 man/s3_put_bucket_lifecycle.Rd | 2 man/s3_put_bucket_lifecycle_configuration.Rd | 2 man/s3_put_bucket_logging.Rd | 2 man/s3_put_bucket_notification.Rd | 2 man/s3_put_bucket_policy.Rd | 12 man/s3_put_bucket_replication.Rd | 2 man/s3_put_bucket_request_payment.Rd | 2 man/s3_put_bucket_tagging.Rd | 2 man/s3_put_bucket_versioning.Rd | 2 man/s3_put_bucket_website.Rd | 2 man/s3_put_object.Rd | 66 - man/s3_put_object_acl.Rd | 12 man/s3_put_object_tagging.Rd | 12 man/s3_restore_object.Rd | 12 man/s3_upload_part.Rd | 28 man/s3_upload_part_copy.Rd | 14 man/s3_write_get_object_response.Rd | 13 man/s3tables.Rd |only man/s3tables_create_namespace.Rd |only man/s3tables_create_table.Rd |only man/s3tables_create_table_bucket.Rd |only man/s3tables_delete_namespace.Rd |only man/s3tables_delete_table.Rd |only man/s3tables_delete_table_bucket.Rd |only man/s3tables_delete_table_bucket_policy.Rd |only man/s3tables_delete_table_policy.Rd |only man/s3tables_get_namespace.Rd |only man/s3tables_get_table.Rd |only man/s3tables_get_table_bucket.Rd |only man/s3tables_get_table_bucket_maintenance_configuration.Rd |only man/s3tables_get_table_bucket_policy.Rd |only man/s3tables_get_table_maintenance_configuration.Rd |only man/s3tables_get_table_maintenance_job_status.Rd |only man/s3tables_get_table_metadata_location.Rd |only man/s3tables_get_table_policy.Rd |only man/s3tables_list_namespaces.Rd |only man/s3tables_list_table_buckets.Rd |only man/s3tables_list_tables.Rd |only man/s3tables_put_table_bucket_maintenance_configuration.Rd |only man/s3tables_put_table_bucket_policy.Rd |only man/s3tables_put_table_maintenance_configuration.Rd |only man/s3tables_put_table_policy.Rd |only man/s3tables_rename_table.Rd |only man/s3tables_update_table_metadata_location.Rd |only man/storagegateway.Rd | 7 man/storagegateway_cancel_cache_report.Rd |only man/storagegateway_delete_cache_report.Rd |only man/storagegateway_describe_cache_report.Rd |only man/storagegateway_list_cache_reports.Rd |only man/storagegateway_notify_when_uploaded.Rd | 4 man/storagegateway_start_cache_report.Rd |only tests/testthat/test_s3tables.R |only tests/testthat/test_storagegateway.R | 4 92 files changed, 911 insertions(+), 648 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 0.5.1 dated 2025-02-19 and 0.5.2 dated 2025-03-14
DESCRIPTION | 6 MD5 | 44 ++-- NEWS.md | 18 + R/MaestroPipeline.R | 97 ++++++---- R/build_schedule_entry.R | 7 R/utils.R | 15 + build/vignette.rds |binary inst/doc/maestro-1-quick-start.html | 20 +- inst/doc/maestro-3-use-cases.R | 31 --- inst/doc/maestro-3-use-cases.html | 119 +++++------- inst/doc/maestro-3-use-cases.qmd | 31 --- inst/doc/maestro-4-advanced-scheduling.html | 12 - inst/doc/maestro-5-directed-acyclic-graphs.html | 22 +- inst/doc/maestro-6-logging.html | 60 +++--- inst/doc/maestro-7-deployment.R |only inst/doc/maestro-7-deployment.html |only inst/doc/maestro-7-deployment.qmd |only tests/testthat/_snaps/run_schedule.md | 41 +++- tests/testthat/test-MaestroSchedule.R | 14 - tests/testthat/test-build_schedule_entry.R | 23 ++ tests/testthat/test-run_schedule.R | 196 +++++++++++++++++++++ tests/testthat/test_pipelines_run_all_good/pipe1.R | 2 vignettes/images |only vignettes/maestro-3-use-cases.qmd | 31 --- vignettes/maestro-7-deployment.qmd |only 25 files changed, 496 insertions(+), 293 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.5.5 dated 2024-09-12 and 1.5.6 dated 2025-03-14
DESCRIPTION | 6 +- MD5 | 53 ++++++++++----------- NAMESPACE | 1 NEWS.md | 6 ++ R/ichimoku-package.R | 2 R/iplot.R | 6 +- R/methods.R | 47 ++++++++++--------- R/mltools.R | 4 - R/oanda.R | 10 ++-- R/utils.R | 22 ++++++++ README.md | 26 +++------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/reference.R | 58 +++++++++++------------ inst/doc/reference.html | 18 +++---- inst/doc/strategies.R | 10 ++-- inst/doc/strategies.html | 90 ++++++++++++++++++------------------ inst/doc/utilities.R | 5 ++ inst/doc/utilities.Rmd | 12 ++++ inst/doc/utilities.html | 17 ++++++ inst/doc/xoanda.R | 94 +++++++++++++++++++------------------- inst/doc/xoanda.Rmd | 2 inst/doc/xoanda.html | 6 +- man/figures/README-ichimoku-1.png |binary man/format_POSIXct.Rd |only src/shikokuchuo.c | 7 +- vignettes/utilities.Rmd | 12 ++++ vignettes/xoanda.Rmd | 2 28 files changed, 292 insertions(+), 226 deletions(-)
Title: Facilitate Citation of R Packages
Description: Facilitates the citation of R packages used in analysis
projects. Scans project for packages used, gets their citations, and
produces a document with citations in the preferred bibliography
format, ready to be pasted into reports or manuscripts. Alternatively,
'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
Author: Francisco Rodriguez-Sanchez [aut, cre, cph]
,
Connor P. Jackson [aut] ,
Shaurita D. Hutchins [ctb],
James M. Clawson [ctb]
Maintainer: Francisco Rodriguez-Sanchez <f.rodriguez.sanc@gmail.com>
Diff between grateful versions 0.2.10 dated 2024-09-04 and 0.2.11 dated 2025-03-14
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 4 + README.md | 97 +++++++++++++++++++++++++++------- inst/CITATION | 4 - man/figures/paragraph.png |only man/figures/paragraph_edited.png |only tests/testthat/test-cite_packages.R | 33 ++++------- tests/testthat/test-get_pkgs_info.R | 26 +++++---- tests/testthat/test-scan_packages.R | 20 ++++--- tests/testthat/test-utils_citations.R | 6 +- 11 files changed, 144 insertions(+), 70 deletions(-)
Title: Exploratory Analyses for the Phylogenetic Comparative Method
Description: Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.
Author: Stephane Dray [aut] ,
Thibaut Jombart [aut],
Anders Ellern Bilgrau [ctb],
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adephylo versions 1.1-16 dated 2023-10-06 and 1.1-17 dated 2025-03-14
DESCRIPTION | 10 ++- MD5 | 87 ++++++++++++++++----------------- NAMESPACE | 3 - R/abouheif.R | 4 - R/adephylo-package.R | 9 +-- R/bullseye.R | 6 +- R/distances.R | 4 - R/orthobasis.R | 2 R/orthogram.R | 2 R/partition.R | 6 +- R/ppca.R | 4 - R/proximities.R | 2 R/table.phylo4d.R | 8 +-- R/utils.R | 14 ++--- build/vignette.rds |binary inst/CITATION | 4 - inst/WORDLIST |only inst/doc/adephylo.pdf |binary man/abouheif.Rd | 4 - man/adephylo-package.Rd | 5 + man/bullseye.Rd | 6 +- man/distRoot.Rd | 2 man/distTips.Rd | 2 man/listDD.Rd | 4 - man/listTips.Rd | 4 - man/miscUtils.Rd | 4 - man/orthobasis.Rd | 2 man/orthogram.Rd | 2 man/ppca.Rd | 4 - man/proxTips.Rd | 2 man/sp.tips.Rd | 6 +- man/table.phylo4d.Rd | 8 +-- man/treePart.Rd | 2 vignettes/figs/adephylo-010.pdf |binary vignettes/figs/adephylo-014.pdf |binary vignettes/figs/adephylo-016.pdf |binary vignettes/figs/adephylo-aboutest.pdf |binary vignettes/figs/adephylo-figFourBas.pdf |binary vignettes/figs/adephylo-lm1.pdf |binary vignettes/figs/adephylo-loadings.pdf |binary vignettes/figs/adephylo-orthobas1.pdf |binary vignettes/figs/adephylo-pca1.pdf |binary vignettes/figs/adephylo-pca2.pdf |binary vignettes/figs/adephylo-phylo4d.pdf |binary vignettes/figs/adephylo-resid.pdf |binary 45 files changed, 111 insertions(+), 111 deletions(-)
Title: 'Amazon Web Services' Security, Identity, & Compliance Services
Description: Interface to 'Amazon Web Services' security, identity, and
compliance services, including the 'Identity & Access Management'
('IAM') service for managing access to services and resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.security.identity versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 153 ++--- R/accessanalyzer_interfaces.R | 12 R/accessanalyzer_operations.R | 34 + R/accessanalyzer_service.R | 1 R/account_service.R | 2 R/acmpca_interfaces.R | 8 R/directoryservice_operations.R | 2 R/guardduty_operations.R | 2 R/iam_interfaces.R | 6 R/iam_operations.R | 37 - R/iam_service.R | 4 R/shield_service.R | 2 R/ssooidc_operations.R | 43 - R/ssooidc_service.R | 7 R/sts_service.R | 2 R/verifiedpermissions_interfaces.R | 12 R/waf_service.R | 2 R/wafv2_interfaces.R | 8 R/wafv2_operations.R | 313 +++-------- R/wafv2_service.R | 31 - man/accessanalyzer.Rd | 1 man/accessanalyzer_get_findings_statistics.Rd |only man/directoryservice_create_directory.Rd | 2 man/guardduty_create_filter.Rd | 2 man/iam.Rd | 2 man/iam_create_open_id_connect_provider.Rd | 2 man/iam_create_saml_provider.Rd | 14 man/iam_disable_organizations_root_credentials_management.Rd | 2 man/iam_disable_organizations_root_sessions.Rd | 2 man/iam_enable_organizations_root_credentials_management.Rd | 2 man/iam_list_account_aliases.Rd | 2 man/iam_update_saml_provider.Rd | 26 man/ssooidc.Rd | 7 man/ssooidc_create_token.Rd | 23 man/ssooidc_create_token_with_iam.Rd | 8 man/ssooidc_register_client.Rd | 12 man/wafv2.Rd | 31 - man/wafv2_associate_web_acl.Rd | 5 man/wafv2_check_capacity.Rd | 7 man/wafv2_create_api_key.Rd | 7 man/wafv2_create_ip_set.Rd | 7 man/wafv2_create_regex_pattern_set.Rd | 7 man/wafv2_create_rule_group.Rd | 7 man/wafv2_create_web_acl.Rd | 18 man/wafv2_delete_api_key.Rd | 7 man/wafv2_delete_ip_set.Rd | 7 man/wafv2_delete_regex_pattern_set.Rd | 7 man/wafv2_delete_rule_group.Rd | 7 man/wafv2_delete_web_acl.Rd | 7 man/wafv2_describe_all_managed_products.Rd | 7 man/wafv2_describe_managed_products_by_vendor.Rd | 7 man/wafv2_describe_managed_rule_group.Rd | 7 man/wafv2_disassociate_web_acl.Rd | 6 man/wafv2_get_decrypted_api_key.Rd | 7 man/wafv2_get_ip_set.Rd | 7 man/wafv2_get_managed_rule_set.Rd | 7 man/wafv2_get_rate_based_statement_managed_keys.Rd | 7 man/wafv2_get_regex_pattern_set.Rd | 7 man/wafv2_get_rule_group.Rd | 7 man/wafv2_get_sampled_requests.Rd | 7 man/wafv2_get_web_acl.Rd | 7 man/wafv2_list_api_keys.Rd | 7 man/wafv2_list_available_managed_rule_group_versions.Rd | 7 man/wafv2_list_available_managed_rule_groups.Rd | 7 man/wafv2_list_ip_sets.Rd | 7 man/wafv2_list_logging_configurations.Rd | 7 man/wafv2_list_managed_rule_sets.Rd | 7 man/wafv2_list_regex_pattern_sets.Rd | 7 man/wafv2_list_resources_for_web_acl.Rd | 17 man/wafv2_list_rule_groups.Rd | 7 man/wafv2_list_web_ac_ls.Rd | 7 man/wafv2_put_managed_rule_set_versions.Rd | 7 man/wafv2_update_ip_set.Rd | 7 man/wafv2_update_managed_rule_set_version_expiry_date.Rd | 7 man/wafv2_update_regex_pattern_set.Rd | 7 man/wafv2_update_rule_group.Rd | 7 man/wafv2_update_web_acl.Rd | 18 78 files changed, 524 insertions(+), 610 deletions(-)
More information about paws.security.identity at CRAN
Permanent link
Title: 'Amazon Web Services' Networking & Content Delivery Services
Description: Interface to 'Amazon Web Services' networking and content
delivery services, including 'Route 53' Domain Name System service,
'CloudFront' content delivery, load balancing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.networking versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 36 +- R/apigatewayv2_operations.R | 10 R/cloudfront_operations.R | 4 R/cloudfront_service.R | 2 R/networkfirewall_interfaces.R | 56 +++- R/networkfirewall_operations.R | 202 ++++++++++++++- R/networkfirewall_service.R | 7 R/networkmanager_service.R | 2 R/route53_service.R | 2 R/route53recoverycontrolconfig_service.R | 2 man/apigatewayv2_create_integration.Rd | 4 man/apigatewayv2_update_integration.Rd | 4 man/cloudfront_delete_vpc_origin.Rd | 4 man/networkfirewall.Rd | 7 man/networkfirewall_create_firewall.Rd | 14 - man/networkfirewall_get_analysis_report_results.Rd |only man/networkfirewall_list_analysis_reports.Rd |only man/networkfirewall_start_analysis_report.Rd |only man/networkfirewall_update_firewall_analysis_settings.Rd |only tests/testthat/test_networkfirewall.R | 8 21 files changed, 328 insertions(+), 42 deletions(-)
More information about paws.networking at CRAN
Permanent link
Title: 'Amazon Web Services' Management & Governance Services
Description: Interface to 'Amazon Web Services' management and governance
services, including 'CloudWatch' application and infrastructure
monitoring, 'Auto Scaling' for automatically scaling resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.management versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 128 ++-- R/cloudformation_interfaces.R | 58 + R/cloudformation_operations.R | 291 ++++++++-- R/cloudformation_service.R | 5 R/cloudtrail_interfaces.R | 12 R/cloudtrail_operations.R | 37 + R/cloudtrail_service.R | 1 R/health_service.R | 2 R/licensemanagerusersubscriptions_operations.R | 12 R/opsworks_service.R | 2 R/organizations_service.R | 2 R/pi_interfaces.R | 2 R/pi_operations.R | 29 R/prometheusservice_interfaces.R | 8 R/prometheusservice_operations.R | 10 R/ssm_operations.R | 63 +- R/ssm_service.R | 20 R/support_service.R | 2 man/cloudformation.Rd | 5 man/cloudformation_create_change_set.Rd | 12 man/cloudformation_create_stack.Rd | 7 man/cloudformation_create_stack_instances.Rd | 2 man/cloudformation_create_stack_refactor.Rd |only man/cloudformation_create_stack_set.Rd | 16 man/cloudformation_delete_stack_instances.Rd | 2 man/cloudformation_describe_change_set_hooks.Rd | 2 man/cloudformation_describe_stack_refactor.Rd |only man/cloudformation_detect_stack_set_drift.Rd | 2 man/cloudformation_estimate_template_cost.Rd | 2 man/cloudformation_execute_stack_refactor.Rd |only man/cloudformation_get_template_summary.Rd | 6 man/cloudformation_list_stack_refactor_actions.Rd |only man/cloudformation_list_stack_refactors.Rd |only man/cloudformation_register_type.Rd | 2 man/cloudformation_update_stack.Rd | 3 man/cloudformation_update_stack_instances.Rd | 2 man/cloudformation_update_stack_set.Rd | 15 man/cloudformation_validate_template.Rd | 8 man/cloudtrail.Rd | 1 man/cloudtrail_search_sample_queries.Rd |only man/licensemanagerusersubscriptions_deregister_identity_provider.Rd | 2 man/licensemanagerusersubscriptions_list_product_subscriptions.Rd | 2 man/licensemanagerusersubscriptions_register_identity_provider.Rd | 2 man/licensemanagerusersubscriptions_start_product_subscription.Rd | 2 man/licensemanagerusersubscriptions_stop_product_subscription.Rd | 2 man/licensemanagerusersubscriptions_upd_ide_pro_set.Rd | 2 man/opsworks.Rd | 2 man/pi_describe_dimension_keys.Rd | 4 man/pi_get_dimension_key_details.Rd | 17 man/pi_get_resource_metrics.Rd | 4 man/prometheusservice_create_scraper.Rd | 3 man/prometheusservice_update_scraper.Rd | 3 man/ssm.Rd | 18 man/ssm_associate_ops_item_related_item.Rd | 2 man/ssm_create_activation.Rd | 2 man/ssm_create_association.Rd | 4 man/ssm_disassociate_ops_item_related_item.Rd | 2 man/ssm_get_parameters_by_path.Rd | 6 man/ssm_list_associations.Rd | 2 man/ssm_list_ops_item_related_items.Rd | 2 man/ssm_put_parameter.Rd | 6 man/ssm_send_command.Rd | 4 man/ssm_start_automation_execution.Rd | 8 man/ssm_start_change_request_execution.Rd | 9 man/ssm_start_session.Rd | 3 man/ssm_update_association.Rd | 13 tests/testthat/test_cloudformation.R | 8 68 files changed, 653 insertions(+), 258 deletions(-)
More information about paws.management at CRAN
Permanent link
Title: 'Amazon Web Services' End User Computing Services
Description: Interface to 'Amazon Web Services' end user computing
services, including collaborative document editing, mobile intranet,
and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.end.user.computing versions 0.8.0 dated 2025-02-10 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/appstream_interfaces.R | 10 +++++----- R/workspacesweb_interfaces.R | 10 +++++----- R/workspacesweb_operations.R | 18 ++++++++++++++---- man/workspacesweb_create_user_settings.Rd | 7 +++++++ man/workspacesweb_update_user_settings.Rd | 7 +++++++ 7 files changed, 47 insertions(+), 23 deletions(-)
More information about paws.end.user.computing at CRAN
Permanent link
Title: 'Amazon Web Services' Developer Tools Services
Description: Interface to 'Amazon Web Services' developer tools services,
including version control, continuous integration and deployment, and
more <https://aws.amazon.com/products/developer-tools/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.developer.tools versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/codebuild_interfaces.R | 12 ++++++------ R/codebuild_operations.R | 14 ++++++++++++++ R/codecatalyst_service.R | 2 +- R/codepipeline_interfaces.R | 10 +++++----- R/codepipeline_operations.R | 12 ++++++------ R/fis_operations.R | 12 ++++++------ man/codebuild_create_webhook.Rd | 7 ++++++- man/codebuild_update_webhook.Rd | 7 ++++++- man/codepipeline_list_rule_types.Rd | 2 +- man/codepipeline_override_stage_condition.Rd | 2 +- man/codepipeline_put_approval_result.Rd | 8 ++++---- 13 files changed, 71 insertions(+), 47 deletions(-)
More information about paws.developer.tools at CRAN
Permanent link
Title: 'Amazon Web Services' Database Services
Description: Interface to 'Amazon Web Services' database services,
including 'Relational Database Service' ('RDS'), 'DynamoDB' 'NoSQL'
database, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.database versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 - MD5 | 38 ++++++------ R/rds_custom.R | 9 -- R/rds_operations.R | 77 ++++++++++++++----------- R/rds_service.R | 2 man/rds.Rd | 2 man/rds_create_db_cluster.Rd | 6 - man/rds_create_db_instance.Rd | 9 +- man/rds_create_db_instance_read_replica.Rd | 2 man/rds_create_integration.Rd | 5 - man/rds_delete_db_cluster.Rd | 4 - man/rds_modify_db_cluster.Rd | 6 - man/rds_modify_db_instance.Rd | 6 - man/rds_modify_db_proxy_target_group.Rd | 4 - man/rds_modify_integration.Rd | 3 man/rds_restore_db_cluster_from_s3.Rd | 11 +++ man/rds_restore_db_cluster_from_snapshot.Rd | 5 - man/rds_restore_db_cluster_to_point_in_time.Rd | 5 - man/rds_restore_db_instance_from_s3.Rd | 6 - man/rds_stop_db_instance.Rd | 4 - 20 files changed, 115 insertions(+), 95 deletions(-)
Title: 'Amazon Web Services' Customer Engagement Services
Description: Interface to 'Amazon Web Services' customer engagement
services, including 'Simple Email Service', 'Connect' contact center
service, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.customer.engagement versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 91 +++-- R/connect_interfaces.R | 48 +-- R/connect_operations.R | 298 +++++++++++++++---- R/connect_service.R | 3 R/connectcases_interfaces.R | 66 ++++ R/connectcases_operations.R | 184 +++++++++++ R/connectcases_service.R | 13 R/pinpointsmsvoicev2_service.R | 48 --- R/sesv2_interfaces.R | 16 - R/sesv2_operations.R | 40 ++ R/sesv2_service.R | 1 man/connect.Rd | 3 man/connect_associate_approved_origin.Rd | 7 man/connect_associate_bot.Rd | 12 man/connect_associate_instance_storage_config.Rd | 8 man/connect_associate_lambda_function.Rd | 7 man/connect_associate_lex_bot.Rd | 7 man/connect_associate_security_key.Rd | 7 man/connect_create_contact.Rd | 17 - man/connect_create_security_profile.Rd | 5 man/connect_delete_instance.Rd | 7 man/connect_describe_authentication_profile.Rd | 2 man/connect_disassociate_approved_origin.Rd | 7 man/connect_disassociate_bot.Rd | 12 man/connect_disassociate_instance_storage_config.Rd | 8 man/connect_disassociate_lambda_function.Rd | 11 man/connect_disassociate_lex_bot.Rd | 12 man/connect_disassociate_security_key.Rd | 11 man/connect_get_metric_data_v2.Rd | 63 +++- man/connect_list_analytics_data_lake_data_sets.Rd |only man/connect_list_authentication_profiles.Rd | 2 man/connect_search_resource_tags.Rd | 20 - man/connect_search_users.Rd | 4 man/connect_update_authentication_profile.Rd | 2 man/connect_update_contact_attributes.Rd | 5 man/connect_update_instance_attribute.Rd | 14 man/connect_update_instance_storage_config.Rd | 8 man/connectcases.Rd | 12 man/connectcases_batch_get_case_rule.Rd |only man/connectcases_create_case_rule.Rd |only man/connectcases_create_template.Rd | 4 man/connectcases_delete_case_rule.Rd |only man/connectcases_get_template.Rd | 2 man/connectcases_list_case_rules.Rd |only man/connectcases_update_case_rule.Rd |only man/connectcases_update_template.Rd | 4 man/sesv2.Rd | 1 man/sesv2_create_configuration_set.Rd | 6 man/sesv2_put_configuration_set_archiving_options.Rd |only 50 files changed, 876 insertions(+), 228 deletions(-)
More information about paws.customer.engagement at CRAN
Permanent link
Title: 'Amazon Web Services' Cost Management Services
Description: Interface to 'Amazon Web Services' cost management services,
including cost and usage reports, budgets, pricing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.cost.management versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- R/billingconductor_service.R | 2 - R/budgets_service.R | 2 - R/costexplorer_service.R | 2 - R/marketplacemetering_service.R | 60 ++++++++-------------------------------- R/savingsplans_service.R | 2 - 7 files changed, 26 insertions(+), 60 deletions(-)
More information about paws.cost.management at CRAN
Permanent link
More information about cpp11tesseract at CRAN
Permanent link
Title: 'Amazon Web Services' Compute Services
Description: Interface to 'Amazon Web Services' compute services,
including 'Elastic Compute Cloud' ('EC2'), 'Lambda'
functions-as-a-service, containers, batch processing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.compute versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 152 +++++----- R/batch_operations.R | 49 +-- R/ec2_interfaces.R | 6 R/ec2_operations.R | 104 ++++--- R/ec2_service.R | 10 R/ecr_operations.R | 4 R/ecr_service.R | 2 R/ecs_operations.R | 29 +- R/eks_interfaces.R | 14 R/eks_operations.R | 63 ++-- R/emrcontainers_interfaces.R | 12 R/lambda_operations.R | 2 R/lightsail_operations.R | 64 ++-- R/lightsail_service.R | 4 R/serverlessapplicationrepository_operations.R | 297 ++++----------------- man/batch_create_compute_environment.Rd | 4 man/batch_create_job_queue.Rd | 18 - man/batch_create_scheduling_policy.Rd | 8 man/batch_register_job_definition.Rd | 2 man/batch_submit_job.Rd | 7 man/batch_update_compute_environment.Rd | 4 man/batch_update_job_queue.Rd | 4 man/batch_update_scheduling_policy.Rd | 2 man/ec2.Rd | 10 man/ec2_assign_ipv_6_addresses.Rd | 6 man/ec2_assign_private_ip_addresses.Rd | 8 man/ec2_authorize_security_group_ingress.Rd | 11 man/ec2_create_capacity_reservation.Rd | 2 man/ec2_create_fleet.Rd | 5 man/ec2_create_managed_prefix_list.Rd | 2 man/ec2_create_network_interface.Rd | 2 man/ec2_describe_availability_zones.Rd | 7 man/ec2_describe_instance_attribute.Rd | 4 man/ec2_describe_network_interfaces.Rd | 10 man/ec2_describe_vpc_endpoints.Rd | 2 man/ec2_modify_instance_attribute.Rd | 7 man/ec2_modify_ipam_resource_discovery.Rd | 16 - man/ec2_run_instances.Rd | 14 man/ec2_unassign_ipv_6_addresses.Rd | 4 man/ec2_unassign_private_ip_addresses.Rd | 4 man/ecr.Rd | 2 man/ecr_start_image_scan.Rd | 4 man/ecs_create_service.Rd | 2 man/ecs_register_task_definition.Rd | 7 man/ecs_stop_task.Rd | 2 man/ecs_tag_resource.Rd | 16 + man/ecs_update_service.Rd | 2 man/eks_create_access_entry.Rd | 19 - man/eks_create_addon.Rd | 6 man/eks_create_cluster.Rd | 18 - man/eks_describe_cluster_versions.Rd | 10 man/eks_update_addon.Rd | 2 man/eks_update_cluster_config.Rd | 4 man/eks_update_cluster_version.Rd | 2 man/eks_update_nodegroup_config.Rd | 2 man/lambda_create_function.Rd | 2 man/lightsail.Rd | 4 man/lightsail_copy_snapshot.Rd | 6 man/lightsail_create_bucket.Rd | 4 man/lightsail_create_contact_method.Rd | 2 man/lightsail_create_container_service.Rd | 4 man/lightsail_create_disk_from_snapshot.Rd | 6 man/lightsail_create_gui_session_access_details.Rd | 2 man/lightsail_create_instances.Rd | 2 man/lightsail_create_instances_from_snapshot.Rd | 8 man/lightsail_create_load_balancer.Rd | 4 man/lightsail_delete_auto_snapshot.Rd | 2 man/lightsail_disable_add_on.Rd | 2 man/lightsail_enable_add_on.Rd | 2 man/lightsail_get_auto_snapshots.Rd | 2 man/lightsail_get_instance_metric_data.Rd | 4 man/lightsail_put_alarm.Rd | 2 man/lightsail_stop_gui_session.Rd | 6 man/lightsail_tag_resource.Rd | 2 man/lightsail_update_container_service.Rd | 2 man/lightsail_update_instance_metadata_options.Rd | 2 77 files changed, 549 insertions(+), 600 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.2.0 dated 2025-02-20 and 1.2.1 dated 2025-03-14
DESCRIPTION | 6 MD5 | 94 +++++++-------- NEWS.md | 29 ++++ R/Result.R | 6 R/Viewer.R | 4 R/cpp11.R | 84 +++++++------ R/cpp12.R | 4 R/relational.R | 43 +++++-- R/rethrow-gen.R | 136 ++++++++++++---------- inst/include/cpp11.hpp | 4 inst/include/cpp11/R.hpp | 6 inst/include/cpp11/altrep.hpp | 4 inst/include/cpp11/as.hpp | 4 inst/include/cpp11/attribute_proxy.hpp | 4 inst/include/cpp11/data_frame.hpp | 4 inst/include/cpp11/declarations.hpp | 4 inst/include/cpp11/doubles.hpp | 4 inst/include/cpp11/environment.hpp | 4 inst/include/cpp11/external_pointer.hpp | 4 inst/include/cpp11/function.hpp | 4 inst/include/cpp11/integers.hpp | 4 inst/include/cpp11/list.hpp | 4 inst/include/cpp11/list_of.hpp | 4 inst/include/cpp11/logicals.hpp | 4 inst/include/cpp11/matrix.hpp | 4 inst/include/cpp11/named_arg.hpp | 6 inst/include/cpp11/protect.hpp | 4 inst/include/cpp11/r_bool.hpp | 4 inst/include/cpp11/r_string.hpp | 4 inst/include/cpp11/r_vector.hpp | 4 inst/include/cpp11/raws.hpp | 4 inst/include/cpp11/sexp.hpp | 4 inst/include/cpp11/strings.hpp | 4 src/Makevars | 2 src/Makevars.win | 2 src/altrepdataframe_relation.cpp |only src/cpp11.cpp | 152 +++++++++++++------------ src/duckdb.tar.xz |binary src/include/altrepdataframe_relation.hpp |only src/include/reltoaltrep.hpp | 12 + src/register.cpp | 6 src/relational.cpp | 188 ++++++++++++++----------------- src/reltoaltrep.cpp | 126 +++++++++++++------- src/scan.cpp | 2 src/transform.cpp | 2 src/utils.cpp | 4 tests/testthat/_snaps/relational.md | 2 tests/testthat/test-relational.R | 14 +- tests/testthat/test-viewer.R | 8 - 49 files changed, 573 insertions(+), 453 deletions(-)
Title: 'Amazon Web Services' Application Integration Services
Description: Interface to 'Amazon Web Services' application integration
services, including 'Simple Queue Service' ('SQS') message queue,
'Simple Notification Service' ('SNS') publish/subscribe messaging, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.application.integration versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 - MD5 | 28 ++++---- R/eventbridge_operations.R | 2 R/locationservice_interfaces.R | 40 ++++++------ R/locationservice_operations.R | 37 +++++++---- R/swf_service.R | 44 +------------- man/eventbridge_put_rule.Rd | 2 man/locationservice_calculate_route.Rd | 3 man/locationservice_calculate_route_matrix.Rd | 3 man/locationservice_create_key.Rd | 6 - man/locationservice_get_device_position_history.Rd | 4 - man/locationservice_search_place_index_for_suggestions.Rd | 5 - man/locationservice_search_place_index_for_text.Rd | 5 - man/locationservice_update_key.Rd | 4 - man/swf.Rd | 2 15 files changed, 86 insertions(+), 105 deletions(-)
More information about paws.application.integration at CRAN
Permanent link
Title: Spatial and Spatio-Temporal Models using 'INLA'
Description: Prepare objects to implement models over spatial and
spacetime domains with the 'INLA' package (<https://www.r-inla.org>).
These objects contain data to for the 'cgeneric' interface in
'INLA', enabling fast parallel computations.
We implemented the spatial barrier model, see Bakka et. al. (2019)
<doi:10.1016/j.spasta.2019.01.002>, and some of the spatio-temporal
models proposed in Lindgren et. al. (2023)
<https://www.idescat.cat/sort/sort481/48.1.1.Lindgren-etal.pdf>.
Details are provided in the available vignettes and from the URL bellow.
Author: Elias Teixeira Krainski [cre, aut, cph]
,
Finn Lindgren [aut] ,
Haavard Rue [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
Diff between INLAspacetime versions 0.1.11 dated 2025-02-25 and 0.1.12 dated 2025-03-14
INLAspacetime-0.1.11/INLAspacetime/inst/examples/Piemonte_borders.csv |only INLAspacetime-0.1.11/INLAspacetime/inst/examples/Piemonte_data_byday.csv |only INLAspacetime-0.1.11/INLAspacetime/inst/examples/coordinates.csv |only INLAspacetime-0.1.11/INLAspacetime/inst/examples/spatial.Rmd |only INLAspacetime-0.1.12/INLAspacetime/DESCRIPTION | 6 INLAspacetime-0.1.12/INLAspacetime/MD5 | 30 ++-- INLAspacetime-0.1.12/INLAspacetime/R/INLAspacetime.R | 8 - INLAspacetime-0.1.12/INLAspacetime/R/barrierModel.define.R | 61 ++++++--- INLAspacetime-0.1.12/INLAspacetime/R/cgeneric_sspde.R | 42 +++++- INLAspacetime-0.1.12/INLAspacetime/R/stModel.define.R | 66 ++++++++-- INLAspacetime-0.1.12/INLAspacetime/R/utils.R |only INLAspacetime-0.1.12/INLAspacetime/README.md | 57 ++++---- INLAspacetime-0.1.12/INLAspacetime/man/barrierModel.define.Rd | 3 INLAspacetime-0.1.12/INLAspacetime/man/cgeneric_sspde.Rd | 6 INLAspacetime-0.1.12/INLAspacetime/man/check_package_version_and_load.Rd |only INLAspacetime-0.1.12/INLAspacetime/man/stModel.define.Rd | 13 + INLAspacetime-0.1.12/INLAspacetime/src/INLAspacetime.h | 8 - INLAspacetime-0.1.12/INLAspacetime/src/Makevars | 3 INLAspacetime-0.1.12/INLAspacetime/src/cgeneric_barrier.c | 4 19 files changed, 209 insertions(+), 98 deletions(-)
Title: 'Amazon Web Services' Analytics Services
Description: Interface to 'Amazon Web Services' 'analytics' services,
including 'Elastic MapReduce' 'Hadoop' and 'Spark' big data service,
'Elasticsearch' search engine, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.analytics versions 0.8.0 dated 2025-02-08 and 0.9.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 76 +-- R/cloudsearchdomain_operations.R | 3 R/firehose_interfaces.R | 6 R/firehose_operations.R | 19 R/healthlake_operations.R | 8 R/opensearchserviceserverless_interfaces.R | 106 ++-- R/opensearchserviceserverless_operations.R | 282 ++++++------- man/cloudsearchdomain_search.Rd | 2 man/firehose_create_delivery_stream.Rd | 15 man/firehose_update_destination.Rd | 2 man/healthlake_start_fhir_export_job.Rd | 4 man/healthlake_start_fhir_import_job.Rd | 4 man/opensearchserviceserverless_create_access_policy.Rd | 14 man/opensearchserviceserverless_create_collection.Rd | 20 man/opensearchserviceserverless_create_lifecycle_policy.Rd | 16 man/opensearchserviceserverless_create_security_config.Rd | 22 - man/opensearchserviceserverless_create_security_policy.Rd | 14 man/opensearchserviceserverless_create_vpc_endpoint.Rd | 18 man/opensearchserviceserverless_delete_access_policy.Rd | 8 man/opensearchserviceserverless_delete_collection.Rd | 8 man/opensearchserviceserverless_delete_lifecycle_policy.Rd | 8 man/opensearchserviceserverless_delete_security_config.Rd | 6 man/opensearchserviceserverless_delete_security_policy.Rd | 8 man/opensearchserviceserverless_delete_vpc_endpoint.Rd | 6 man/opensearchserviceserverless_get_access_policy.Rd | 6 man/opensearchserviceserverless_get_security_policy.Rd | 6 man/opensearchserviceserverless_list_access_policies.Rd | 20 man/opensearchserviceserverless_list_collections.Rd | 10 man/opensearchserviceserverless_list_lifecycle_policies.Rd | 20 man/opensearchserviceserverless_list_security_configs.Rd | 12 man/opensearchserviceserverless_list_security_policies.Rd | 20 man/opensearchserviceserverless_list_vpc_endpoints.Rd | 16 man/opensearchserviceserverless_update_access_policy.Rd | 20 man/opensearchserviceserverless_update_collection.Rd | 8 man/opensearchserviceserverless_update_lifecycle_policy.Rd | 22 - man/opensearchserviceserverless_update_security_config.Rd | 18 man/opensearchserviceserverless_update_security_policy.Rd | 20 man/opensearchserviceserverless_update_vpc_endpoint.Rd | 20 39 files changed, 455 insertions(+), 444 deletions(-)
More information about paws.analytics at CRAN
Permanent link
Title: A Framework for Building HTTP API
Description: Allows to easily create high-performance full featured HTTP APIs from R
functions. Provides high-level classes such as 'Request', 'Response',
'Application', 'Middleware' in order to streamline server side
application development. Out of the box allows to serve requests using
'Rserve' package, but flexible enough to integrate with other HTTP servers
such as 'httpuv'.
Author: Dmitry Selivanov [aut, cre] ,
Artem Klevtsov [aut] ,
David Zimmermann [ctb],
rexy.ai [cph, fnd]
Maintainer: Dmitry Selivanov <selivanov.dmitriy@gmail.com>
Diff between RestRserve versions 1.2.3 dated 2024-05-21 and 1.2.4 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- README.md | 2 +- inst/doc/Authentication.html | 4 ++-- inst/doc/ContentHandlers.html | 10 +++++----- inst/doc/Logging.html | 10 +++++----- inst/doc/Middleware.html | 22 +++++++++++----------- inst/doc/RestRserve.Rmd | 2 +- inst/doc/RestRserve.html | 22 +++++++++++----------- man/RestRserve-package.Rd | 8 +++++--- src/nonstd/string_view.hpp | 16 ++++++++-------- vignettes/RestRserve.Rmd | 2 +- 12 files changed, 64 insertions(+), 62 deletions(-)
Title: Geometrically Designed Spline Regression
Description: Spline Regression, Generalized Additive Models, and Component-wise Gradient
Boosting, utilizing Geometrically Designed (GeD) Splines. GeDS regression is a
non-parametric method inspired by geometric principles, for fitting spline regression
models with variable knots in one or two independent variables. It efficiently estimates
the number of knots and their positions, as well as the spline order, assuming the
response variable follows a distribution from the exponential family. GeDS models
integrate the broader category of Generalized (Non-)Linear Models, offering a flexible
approach to modeling complex relationships. A description of the method can be found in
Kaishev et al. (2016) <doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
<doi:10.1016/j.amc.2022.127493>. Further extending its capabilities, GeDS's implementation
includes Generalized Additive Models (GAM) and Functional Gradient Boosting (FGB),
enabling versatile multivariate predictor modeling, as discuss [...truncated...]
Author: Dimitrina S. Dimitrova [aut],
Vladimir K. Kaishev [aut],
Andrea Lattuada [aut],
Emilio L. Saenz Guillen [aut, cre],
Richard J. Verrall [aut]
Maintainer: Emilio L. Saenz Guillen <Emilio.Saenz-Guillen@bayes.city.ac.uk>
Diff between GeDS versions 0.2.7 dated 2025-03-11 and 0.2.8 dated 2025-03-14
DESCRIPTION | 6 MD5 | 19 - NAMESPACE | 1 R/BivariateFitter.R | 4 R/RcppExports.R | 4 R/cpp_functions_R.R | 12 - R/plot_GeDSMethod.R | 565 +++++++++++++++++++++++++++++++++++++++++++++++++++- R/pprep.R | 59 +++++ man/PPolyInv.Rd |only src/GeDS1.cpp | 12 - src/RcppExports.cpp | 8 11 files changed, 654 insertions(+), 36 deletions(-)
Title: Algorithms and Tools for Tabular Statistics and Hierarchical
Computations
Description: Includes general data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.7.0 dated 2025-02-04 and 1.7.5 dated 2025-03-14
DESCRIPTION | 18 +++--- MD5 | 70 +++++++++++++-------------- NAMESPACE | 1 NEWS.md | 21 ++++++++ R/As_TsparseMatrix.R | 30 ----------- R/DummyApply.R | 2 R/DummyDuplicated.R | 10 +-- R/FormulaSelection.R | 2 R/GaussIndependent.R | 2 R/GaussSuppression.R | 14 +---- R/Hierarchies2ModelMatrix.R | 14 ++--- R/HierarchiesAndFormula2ModelMatrix.R | 4 - R/LSfitNonNeg.R | 4 - R/Mipf.R | 16 +++--- R/NumSingleton.R | 15 +++++ R/PatternMatching.R | 33 +++++++++--- R/RbindAllCbindIdMatch.r | 13 +++++ R/Reduce0exact.R | 10 +-- man/DummyApply.Rd | 2 man/DummyDuplicated.Rd | 10 +-- man/FormulaSelection.Rd | 2 man/GaussIndependent.Rd | 2 man/HierarchicalWildcardGlobbing.Rd | 5 + man/Hierarchies2ModelMatrix.Rd | 14 ++--- man/HierarchiesAndFormula2ModelMatrix.Rd | 4 - man/LSfitNonNeg.Rd | 4 - man/Mipf.Rd | 16 +++--- man/NumSingleton.Rd | 15 +++++ man/Reduce0exact.Rd | 10 +-- man/figures |only tests/testthat/test-DummyApply.R | 2 tests/testthat/test-GaussIndependent.R | 10 +-- tests/testthat/test-HierarchyCompute.R | 16 +++--- tests/testthat/test-ModelMatrix.R | 10 +-- tests/testthat/test-PatternMatching.R |only tests/testthat/test-Reduce0exact.R | 6 +- tests/testthat/test-aggregate_multiple_fun.R | 6 +- 37 files changed, 231 insertions(+), 182 deletions(-)
Title: Lightening One-Code Resolving Microbial Ecology Solution
Description: Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.
Author: Ningqi Wang [aut, cre, cph],
Yaozhong Zhang [aut],
Gaofei Jiang [aut]
Maintainer: Ningqi Wang <2434066068@qq.com>
Diff between LorMe versions 1.2.0 dated 2025-03-11 and 1.2.1 dated 2025-03-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/Alpha_diversity_calculator.R | 7 +++++++ R/compare_plot.R | 5 +++-- R/structure_plot.R | 8 +++++++- 5 files changed, 24 insertions(+), 10 deletions(-)
Title: Tandem Repeat Analysis by Capillary Electrophoresis
Description: A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).
Author: Zachariah McLean [aut, cre, cph]
,
Kevin Correia [aut],
Andrew Jiang [ctb]
Maintainer: Zachariah McLean <zachariah.louis.mclean@gmail.com>
Diff between trace versions 0.5.0 dated 2025-01-16 and 0.6.0 dated 2025-03-14
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 154 +++++------ R/calculate_instability_metrics.R | 69 ++-- README.md | 76 ++--- inst/doc/plotting_traces.Rmd | 428 +++++++++++++++---------------- inst/doc/plotting_traces.html | 2 man/extract_repeat_correction_summary.Rd | 98 +++---- man/figures/README-ggplot-1.png |binary man/figures/README-plot_traces-1.png |binary man/fragments_trace.Rd | 262 +++++++++--------- tests/testthat/test-call_repeats.R | 4 tests/testthat/test-shinytest2.R | 1 vignettes/plotting_traces.Rmd | 428 +++++++++++++++---------------- 14 files changed, 781 insertions(+), 773 deletions(-)
Title: Multivariate (Dynamic) Generalized Additive Models
Description: Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2023) <doi:10.1111/2041-210X.13974>.
Author: Nicholas J Clark [aut, cre] ,
Sarah Heaps [ctb] ,
Scott Pease [ctb] ,
Matthijs Hollanders [ctb]
Maintainer: Nicholas J Clark <nicholas.j.clark1214@gmail.com>
Diff between mvgam versions 1.1.4 dated 2025-02-18 and 1.1.51 dated 2025-03-14
mvgam-1.1.4/mvgam/man/figures/README-beta_fc-1.png |only mvgam-1.1.4/mvgam/man/figures/README-beta_sim-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-12-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-13-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-14-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-15-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-16-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-17-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-18-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-19-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-20-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-21-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-22-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-23-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-24-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-24-2.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-4-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-4-2.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-5-1.png |only mvgam-1.1.4/mvgam/man/figures/README-unnamed-chunk-8-1.png |only mvgam-1.1.51/mvgam/DESCRIPTION | 10 mvgam-1.1.51/mvgam/MD5 | 357 mvgam-1.1.51/mvgam/NAMESPACE | 4 mvgam-1.1.51/mvgam/NEWS.md | 16 mvgam-1.1.51/mvgam/R/add_MACor.R | 3650 +++++--- mvgam-1.1.51/mvgam/R/add_base_dgam_lines.R | 834 - mvgam-1.1.51/mvgam/R/add_binomial.R | 546 - mvgam-1.1.51/mvgam/R/add_corcar.R | 62 mvgam-1.1.51/mvgam/R/add_nmixture.R | 790 + mvgam-1.1.51/mvgam/R/add_poisson_lines.R | 26 mvgam-1.1.51/mvgam/R/add_residuals.R | 4 mvgam-1.1.51/mvgam/R/add_stan_data.R | 887 +- mvgam-1.1.51/mvgam/R/add_trend_lines.R | 1912 ++-- mvgam-1.1.51/mvgam/R/add_tweedie_lines.R | 74 mvgam-1.1.51/mvgam/R/as.data.frame.mvgam.R | 480 - mvgam-1.1.51/mvgam/R/backends.R | 1853 ++-- mvgam-1.1.51/mvgam/R/compute_edf.R | 95 mvgam-1.1.51/mvgam/R/conditional_effects.R | 242 mvgam-1.1.51/mvgam/R/data_grids.R | 196 mvgam-1.1.51/mvgam/R/dynamic.R | 290 mvgam-1.1.51/mvgam/R/ensemble.R | 413 mvgam-1.1.51/mvgam/R/evaluate_mvgams.R | 796 + mvgam-1.1.51/mvgam/R/families.R | 2075 ++-- mvgam-1.1.51/mvgam/R/fevd.mvgam.R | 327 mvgam-1.1.51/mvgam/R/forecast.mvgam.R | 2233 ++--- mvgam-1.1.51/mvgam/R/formula.mvgam.R | 16 mvgam-1.1.51/mvgam/R/get_linear_predictors.R | 190 mvgam-1.1.51/mvgam/R/get_monitor_pars.R | 41 mvgam-1.1.51/mvgam/R/get_mvgam_priors.R | 3257 ++++--- mvgam-1.1.51/mvgam/R/globals.R | 164 mvgam-1.1.51/mvgam/R/gp.R | 2868 +++--- mvgam-1.1.51/mvgam/R/gratia_methods.R | 564 - mvgam-1.1.51/mvgam/R/hindcast.mvgam.R | 225 mvgam-1.1.51/mvgam/R/how_to_cite.R | 162 mvgam-1.1.51/mvgam/R/index-mvgam.R | 275 mvgam-1.1.51/mvgam/R/interpret_mvgam.R | 180 mvgam-1.1.51/mvgam/R/irf.mvgam.R | 464 - mvgam-1.1.51/mvgam/R/jsdgam.R | 608 - mvgam-1.1.51/mvgam/R/lfo_cv.mvgam.R | 868 +- mvgam-1.1.51/mvgam/R/logLik.mvgam.R | 146 mvgam-1.1.51/mvgam/R/loo.mvgam.R | 78 mvgam-1.1.51/mvgam/R/lv_correlations.R | 57 mvgam-1.1.51/mvgam/R/marginaleffects.mvgam.R | 557 - mvgam-1.1.51/mvgam/R/mcmc_plot.mvgam.R | 94 mvgam-1.1.51/mvgam/R/model.frame.mvgam.R | 102 mvgam-1.1.51/mvgam/R/monotonic.R | 286 mvgam-1.1.51/mvgam/R/mvgam.R | 4775 ++++++----- mvgam-1.1.51/mvgam/R/mvgam_diagnostics.R | 32 mvgam-1.1.51/mvgam/R/mvgam_fevd-class.R | 124 mvgam-1.1.51/mvgam/R/mvgam_irf-class.R | 277 mvgam-1.1.51/mvgam/R/mvgam_setup.R | 1825 ++-- mvgam-1.1.51/mvgam/R/mvgam_trend_types.R | 311 mvgam-1.1.51/mvgam/R/noncent_trend.R | 790 + mvgam-1.1.51/mvgam/R/onAttach.R | 22 mvgam-1.1.51/mvgam/R/pairs.mvgam.R | 38 mvgam-1.1.51/mvgam/R/piecewise_trends.R | 552 - mvgam-1.1.51/mvgam/R/plot.mvgam.R | 535 - mvgam-1.1.51/mvgam/R/plot_mvgam_factors.R | 180 mvgam-1.1.51/mvgam/R/plot_mvgam_fc.R | 1082 +- mvgam-1.1.51/mvgam/R/plot_mvgam_pterms.R | 365 mvgam-1.1.51/mvgam/R/plot_mvgam_randomeffects.R | 293 mvgam-1.1.51/mvgam/R/plot_mvgam_resids.R | 271 mvgam-1.1.51/mvgam/R/plot_mvgam_series.R | 220 mvgam-1.1.51/mvgam/R/plot_mvgam_smooth.R | 1481 ++- mvgam-1.1.51/mvgam/R/plot_mvgam_trend.R | 508 - mvgam-1.1.51/mvgam/R/plot_mvgam_uncertainty.R | 240 mvgam-1.1.51/mvgam/R/portal_data.R | 35 mvgam-1.1.51/mvgam/R/posterior_epred.mvgam.R | 280 mvgam-1.1.51/mvgam/R/ppc.mvgam.R | 1459 ++- mvgam-1.1.51/mvgam/R/predict.mvgam.R | 584 - mvgam-1.1.51/mvgam/R/print.mvgam.R | 146 mvgam-1.1.51/mvgam/R/residual_cor.R | 147 mvgam-1.1.51/mvgam/R/residuals.mvgam.R | 43 mvgam-1.1.51/mvgam/R/sanitise_modelfile.R | 18 mvgam-1.1.51/mvgam/R/score.mvgam_forecast.R | 320 mvgam-1.1.51/mvgam/R/series_to_mvgam.R | 85 mvgam-1.1.51/mvgam/R/shared_obs_params.R | 341 mvgam-1.1.51/mvgam/R/sim_mvgam.R | 479 - mvgam-1.1.51/mvgam/R/stability.R | 573 - mvgam-1.1.51/mvgam/R/stan_utils.R | 5111 +++++++----- mvgam-1.1.51/mvgam/R/stationarise_VAR.R | 680 - mvgam-1.1.51/mvgam/R/summary.mvgam.R | 1271 +- mvgam-1.1.51/mvgam/R/sysdata.rda |binary mvgam-1.1.51/mvgam/R/tidier_methods.R | 38 mvgam-1.1.51/mvgam/R/trends.R | 1774 ++-- mvgam-1.1.51/mvgam/R/update.mvgam.R | 391 mvgam-1.1.51/mvgam/R/update_priors.R | 585 - mvgam-1.1.51/mvgam/R/validations.R | 1276 +- mvgam-1.1.51/mvgam/README.md | 1100 +- mvgam-1.1.51/mvgam/build/partial.rdb |binary mvgam-1.1.51/mvgam/data/portal_data.rda |binary mvgam-1.1.51/mvgam/inst/CITATION | 4 mvgam-1.1.51/mvgam/inst/doc/data_in_mvgam.R | 362 mvgam-1.1.51/mvgam/inst/doc/data_in_mvgam.Rmd | 293 mvgam-1.1.51/mvgam/inst/doc/data_in_mvgam.html | 755 - mvgam-1.1.51/mvgam/inst/doc/forecast_evaluation.R | 246 mvgam-1.1.51/mvgam/inst/doc/forecast_evaluation.Rmd | 648 - mvgam-1.1.51/mvgam/inst/doc/forecast_evaluation.html | 526 - mvgam-1.1.51/mvgam/inst/doc/mvgam_overview.R | 254 mvgam-1.1.51/mvgam/inst/doc/mvgam_overview.Rmd | 262 mvgam-1.1.51/mvgam/inst/doc/mvgam_overview.html | 842 - mvgam-1.1.51/mvgam/inst/doc/nmixtures.R | 488 - mvgam-1.1.51/mvgam/inst/doc/nmixtures.Rmd | 439 - mvgam-1.1.51/mvgam/inst/doc/nmixtures.html | 525 - mvgam-1.1.51/mvgam/inst/doc/shared_states.R | 399 mvgam-1.1.51/mvgam/inst/doc/shared_states.Rmd | 396 mvgam-1.1.51/mvgam/inst/doc/shared_states.html | 469 - mvgam-1.1.51/mvgam/inst/doc/time_varying_effects.R | 226 mvgam-1.1.51/mvgam/inst/doc/time_varying_effects.Rmd | 208 mvgam-1.1.51/mvgam/inst/doc/time_varying_effects.html | 333 mvgam-1.1.51/mvgam/inst/doc/trend_formulas.R | 463 - mvgam-1.1.51/mvgam/inst/doc/trend_formulas.Rmd | 375 mvgam-1.1.51/mvgam/inst/doc/trend_formulas.html | 646 - mvgam-1.1.51/mvgam/man/GP.Rd | 12 mvgam-1.1.51/mvgam/man/RW.Rd | 25 mvgam-1.1.51/mvgam/man/conditional_effects.mvgam.Rd | 2 mvgam-1.1.51/mvgam/man/dynamic.Rd | 3 mvgam-1.1.51/mvgam/man/ensemble.mvgam_forecast.Rd | 2 mvgam-1.1.51/mvgam/man/fevd.mvgam.Rd | 30 mvgam-1.1.51/mvgam/man/forecast.mvgam.Rd | 21 mvgam-1.1.51/mvgam/man/get_mvgam_priors.Rd | 205 mvgam-1.1.51/mvgam/man/hindcast.mvgam.Rd | 10 mvgam-1.1.51/mvgam/man/irf.mvgam.Rd | 31 mvgam-1.1.51/mvgam/man/jsdgam.Rd | 92 mvgam-1.1.51/mvgam/man/mvgam-package.Rd | 2 mvgam-1.1.51/mvgam/man/mvgam.Rd | 555 - mvgam-1.1.51/mvgam/man/mvgam_fevd-class.Rd | 4 mvgam-1.1.51/mvgam/man/mvgam_irf-class.Rd | 4 mvgam-1.1.51/mvgam/man/piecewise_trends.Rd | 12 mvgam-1.1.51/mvgam/man/plot.mvgam_irf.Rd | 3 mvgam-1.1.51/mvgam/man/plot.mvgam_lfo.Rd | 2 mvgam-1.1.51/mvgam/man/plot.mvgam_residcor.Rd |only mvgam-1.1.51/mvgam/man/plot_mvgam_factors.Rd | 7 mvgam-1.1.51/mvgam/man/plot_mvgam_forecasts.Rd | 46 mvgam-1.1.51/mvgam/man/plot_mvgam_trend.Rd | 13 mvgam-1.1.51/mvgam/man/portal_data.Rd | 18 mvgam-1.1.51/mvgam/man/pp_check.mvgam.Rd | 79 mvgam-1.1.51/mvgam/man/ppc.mvgam.Rd | 21 mvgam-1.1.51/mvgam/man/predict.mvgam.Rd | 12 mvgam-1.1.51/mvgam/man/residual_cor.jsdgam.Rd | 4 mvgam-1.1.51/mvgam/man/score.mvgam_forecast.Rd | 9 mvgam-1.1.51/mvgam/man/stability.mvgam.Rd | 5 mvgam-1.1.51/mvgam/man/summary.mvgam_fevd.Rd |only mvgam-1.1.51/mvgam/man/summary.mvgam_irf.Rd |only mvgam-1.1.51/mvgam/man/update.mvgam.Rd | 171 mvgam-1.1.51/mvgam/tests/testthat/setup.R | 92 mvgam-1.1.51/mvgam/tests/testthat/test-RW.R | 793 + mvgam-1.1.51/mvgam/tests/testthat/test-binomial.R | 453 - mvgam-1.1.51/mvgam/tests/testthat/test-dynamic.R | 228 mvgam-1.1.51/mvgam/tests/testthat/test-example_processing.R | 1118 +- mvgam-1.1.51/mvgam/tests/testthat/test-families.R | 1262 +- mvgam-1.1.51/mvgam/tests/testthat/test-gp.R | 575 - mvgam-1.1.51/mvgam/tests/testthat/test-jsdgam.R | 3821 +++++++- mvgam-1.1.51/mvgam/tests/testthat/test-marginaleffects.R | 255 mvgam-1.1.51/mvgam/tests/testthat/test-monotonic.R | 221 mvgam-1.1.51/mvgam/tests/testthat/test-mvgam-methods.R | 878 +- mvgam-1.1.51/mvgam/tests/testthat/test-mvgam.R | 1970 ++-- mvgam-1.1.51/mvgam/tests/testthat/test-mvgam_priors.R | 736 + mvgam-1.1.51/mvgam/tests/testthat/test-nmixture.R | 500 - mvgam-1.1.51/mvgam/tests/testthat/test-offset.R | 228 mvgam-1.1.51/mvgam/tests/testthat/test-piecewise.R | 279 mvgam-1.1.51/mvgam/tests/testthat/test-sim_mvgam.R | 109 mvgam-1.1.51/mvgam/tests/testthat/test-tidier_methods.R | 46 mvgam-1.1.51/mvgam/tests/testthat/test-update.R | 155 mvgam-1.1.51/mvgam/vignettes/data_in_mvgam.Rmd | 293 mvgam-1.1.51/mvgam/vignettes/forecast_evaluation.Rmd | 254 mvgam-1.1.51/mvgam/vignettes/mvgam_overview.Rmd | 1182 +- mvgam-1.1.51/mvgam/vignettes/nmixtures.Rmd | 1101 +- mvgam-1.1.51/mvgam/vignettes/shared_states.Rmd | 396 mvgam-1.1.51/mvgam/vignettes/time_varying_effects.Rmd | 694 - mvgam-1.1.51/mvgam/vignettes/trend_formulas.Rmd | 375 191 files changed, 51392 insertions(+), 37212 deletions(-)