Title: The Echelon Analysis and the Detection of Spatial Clusters using
Echelon Scan Method
Description: Functions for the echelon analysis proposed by Myers et al. (1997) <doi:10.1023/A:1018518327329>, and the detection of spatial clusters using echelon scan method proposed by Kurihara (2003) <doi:10.20551/jscswabun.15.2_171>.
Author: Fumio Ishioka [aut, cre]
Maintainer: Fumio Ishioka <fishioka@okayama-u.ac.jp>
Diff between echelon versions 0.3.0 dated 2025-03-03 and 0.3.1 dated 2025-03-20
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/e.echebin.r | 7 ++++--- R/e.echepoi.r | 7 ++++--- R/e_main.monte.r | 8 ++++---- src/e_monteCPP.cpp | 6 ++++++ 7 files changed, 31 insertions(+), 19 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph]
Maintainer: Xingchi Li <anthony.li.stat.tamu.edu@lixingchi.com>
Diff between fastcpd versions 0.16.0 dated 2025-03-13 and 0.16.1 dated 2025-03-20
fastcpd-0.16.0/fastcpd/inst/doc/examples-advanced.R |only fastcpd-0.16.0/fastcpd/inst/doc/examples-custom-model.R |only fastcpd-0.16.0/fastcpd/inst/doc/exploration-during-development.R |only fastcpd-0.16.0/fastcpd/man/figures/README-time-comparison-1.png |only fastcpd-0.16.0/fastcpd/tests/testthat/examples/fastcpd_mean.R |only fastcpd-0.16.0/fastcpd/tests/testthat/examples/fastcpd_meanvariance.R |only fastcpd-0.16.0/fastcpd/tests/testthat/examples/fastcpd_variance.R |only fastcpd-0.16.0/fastcpd/tests/testthat/test-examples-fastcpd_mean.R |only fastcpd-0.16.0/fastcpd/tests/testthat/test-examples-fastcpd_meanvariance.R |only fastcpd-0.16.0/fastcpd/tests/testthat/test-examples-fastcpd_variance.R |only fastcpd-0.16.1/fastcpd/DESCRIPTION | 6 fastcpd-0.16.1/fastcpd/MD5 | 98 fastcpd-0.16.1/fastcpd/NEWS.md | 4 fastcpd-0.16.1/fastcpd/R/RcppExports.R | 4 fastcpd-0.16.1/fastcpd/R/fastcpd.R | 152 + fastcpd-0.16.1/fastcpd/R/utilities.R | 119 - fastcpd-0.16.1/fastcpd/README.md | 289 +- fastcpd-0.16.1/fastcpd/build/vignette.rds |binary fastcpd-0.16.1/fastcpd/inst/doc/examples-advanced.Rmd | 533 ++--- fastcpd-0.16.1/fastcpd/inst/doc/examples-advanced.html | 785 ++----- fastcpd-0.16.1/fastcpd/inst/doc/examples-custom-model.Rmd | 120 - fastcpd-0.16.1/fastcpd/inst/doc/examples-custom-model.html | 192 - fastcpd-0.16.1/fastcpd/inst/doc/exploration-during-development.Rmd | 493 ++++ fastcpd-0.16.1/fastcpd/inst/doc/exploration-during-development.html | 1003 +++++----- fastcpd-0.16.1/fastcpd/inst/doc/time-complexity.Rmd | 80 fastcpd-0.16.1/fastcpd/inst/doc/time-complexity.html | 270 +- fastcpd-0.16.1/fastcpd/inst/include/fastcpd.h | 41 fastcpd-0.16.1/fastcpd/inst/include/fastcpd_impl.h | 3 fastcpd-0.16.1/fastcpd/man/fastcpd_mean.Rd | 32 fastcpd-0.16.1/fastcpd/man/fastcpd_meanvariance.Rd | 12 fastcpd-0.16.1/fastcpd/man/fastcpd_variance.Rd | 5 fastcpd-0.16.1/fastcpd/man/figures/README-time-comparison-large-1.png |only fastcpd-0.16.1/fastcpd/man/figures/README-time-comparison-small-1.png |only fastcpd-0.16.1/fastcpd/src/RcppExports.cpp | 11 fastcpd-0.16.1/fastcpd/src/fastcpd_classes.cc | 135 - fastcpd-0.16.1/fastcpd/src/fastcpd_impl.cc | 65 fastcpd-0.16.1/fastcpd/src/fastcpd_test.cc | 50 fastcpd-0.16.1/fastcpd/src/test-fastcpd.cc | 86 fastcpd-0.16.1/fastcpd/tests/testthat.R | 4 fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_mean_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_mean_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_meanvariance_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_meanvariance_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_variance_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/examples/fastcpd_variance_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-check.R | 9 fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_3.R | 2 fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_arma.R | 2 fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_mean_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_mean_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_meanvariance_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_meanvariance_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_variance_1.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-examples-fastcpd_variance_2.R |only fastcpd-0.16.1/fastcpd/tests/testthat/test-vignettes-comparison-pelt-lasso.R | 1 fastcpd-0.16.1/fastcpd/tests/testthat/test-vignettes-comparison-pelt-logistic-regression.R | 3 fastcpd-0.16.1/fastcpd/tests/testthat/test-vignettes-comparison-pelt-poisson-regression.R | 3 fastcpd-0.16.1/fastcpd/vignettes/examples-advanced.Rmd | 533 ++--- fastcpd-0.16.1/fastcpd/vignettes/examples-custom-model.Rmd | 120 - fastcpd-0.16.1/fastcpd/vignettes/exploration-during-development.Rmd | 493 ++++ fastcpd-0.16.1/fastcpd/vignettes/time-complexity.Rmd | 80 fastcpd-0.16.1/fastcpd/vignettes/time-complexity/time-complexity-1.png |binary 62 files changed, 3301 insertions(+), 2537 deletions(-)
Title: Create a Data Dictionary
Description: Creates a data dictionary from any dataframe or tibble in your R environment.
You can opt to add variable labels. You can write the object directly to Excel.
Author: Bethany Jones [aut, cre]
Maintainer: Bethany Jones <r.data.nerd@gmail.com>
Diff between datadictionary versions 1.0.0 dated 2023-03-12 and 1.0.1 dated 2025-03-20
DESCRIPTION | 16 ++--- LICENSE | 4 - MD5 | 30 ++++----- NAMESPACE | 31 ++++------ NEWS.md | 6 + R/create_dictionary.R | 6 - R/summarise_variable.R | 2 R/utils.R | 86 +++++++++++++++------------- README.md | 3 man/create_dictionary.Rd | 82 +++++++++++++------------- man/mode_stat.Rd | 34 +++++------ man/summarise_variable.Rd | 48 +++++++-------- tests/testthat/test-create_dictionary.R | 7 +- tests/testthat/test-summarise_variable.R | 22 ++++++- tests/testthat/testdata/tester.rds |binary tests/testthat/testdata/tester_no_error.rds |binary 16 files changed, 207 insertions(+), 170 deletions(-)
More information about datadictionary at CRAN
Permanent link
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.11 dated 2025-02-05 and 1.1.12 dated 2025-03-20
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ cleanup | 1 + configure | 10 +++++++++- src/Makevars.in | 8 +++++++- src/cpp11/include/cpp11/R.hpp | 2 +- src/cpp11/include/cpp11/named_arg.hpp | 2 +- 8 files changed, 33 insertions(+), 14 deletions(-)
Title: Lightweight Variable Labels
Description: Assign, extract, or remove variable labels from R vectors.
Lightweight and dependency-free.
Author: Marius Barth [aut, cre]
Maintainer: Marius Barth <marius.barth.uni.koeln@gmail.com>
Diff between tinylabels versions 0.2.4 dated 2023-09-02 and 0.2.5 dated 2025-03-20
tinylabels-0.2.4/tinylabels/R/methods-ggplot2.R |only tinylabels-0.2.5/tinylabels/DESCRIPTION | 11 ++-- tinylabels-0.2.5/tinylabels/MD5 | 23 ++++------ tinylabels-0.2.5/tinylabels/NEWS.md | 7 +++ tinylabels-0.2.5/tinylabels/R/onload.R | 4 - tinylabels-0.2.5/tinylabels/build/vignette.rds |binary tinylabels-0.2.5/tinylabels/inst/CITATION | 13 ++++- tinylabels-0.2.5/tinylabels/inst/doc/specification.R | 2 tinylabels-0.2.5/tinylabels/inst/doc/specification.html | 4 - tinylabels-0.2.5/tinylabels/inst/doc/tinylabels_vignette.R | 5 -- tinylabels-0.2.5/tinylabels/inst/doc/tinylabels_vignette.Rmd | 2 tinylabels-0.2.5/tinylabels/inst/doc/tinylabels_vignette.html | 6 +- tinylabels-0.2.5/tinylabels/vignettes/tinylabels_vignette.Rmd | 2 13 files changed, 42 insertions(+), 37 deletions(-)
Title: High Dimensional Supervised Classification and Clustering
Description: Discriminant analysis and data clustering methods for high
dimensional data, based on the assumption that high-dimensional data live in
different subspaces with low dimensionality proposing a new parametrization of
the Gaussian mixture model which combines the ideas of dimension reduction and
constraints on the model.
Author: Laurent Berge [aut, cre],
Charles Bouveyron [aut],
Stephane Girard [aut]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between HDclassif versions 2.2.1 dated 2023-08-23 and 2.2.2 dated 2025-03-20
DESCRIPTION | 20 ++++++++++++++++---- MD5 | 14 +++++++------- R/hdc.R | 4 ++-- R/mdaHD.R | 17 +++++++++++------ build/partial.rdb |binary inst/NEWS.Rd | 6 ++++++ man/hdda.Rd | 22 +++++++++++----------- man/hddc.Rd | 24 ++++++++++++------------ 8 files changed, 65 insertions(+), 42 deletions(-)
Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage
using specified enrollment and time-to-event models through
simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.2.7 dated 2025-03-13 and 0.2.8 dated 2025-03-20
DESCRIPTION | 9 +++++---- MD5 | 32 ++++++++++++++++++++------------ NEWS.md | 9 +++++++-- R/eventPred-package.R | 9 ++++++++- R/fitDropout.R | 37 ++++++++++++++++++++----------------- R/fitEvent.R | 38 ++++++++++++++++++++------------------ R/getPrediction.R | 12 +++++------- R/predictEvent.R | 28 ++++++++++++++-------------- inst/shinyApp/app.R | 20 ++++++++++---------- man/eventPred-package.Rd | 9 ++++++++- man/fitDropout.Rd | 20 +++++++++++--------- man/fitEvent.Rd | 21 +++++++++++---------- man/getPrediction.Rd | 8 +++----- tests |only 14 files changed, 142 insertions(+), 110 deletions(-)
Title: High Dimensional Categorical Data Visualization
Description: Easy visualization for datasets with more than two categorical variables and additional continuous variables. 'diceplot' is particularly useful for exploring complex categorical data in the context of pathway analysis across multiple conditions. For a detailed documentation please visit <https://dice-and-domino-plot.readthedocs.io/en/latest/>.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between diceplot versions 0.1.5 dated 2025-03-12 and 0.1.6 dated 2025-03-20
diceplot-0.1.5/diceplot/tests/test_domino_base.R |only diceplot-0.1.6/diceplot/DESCRIPTION | 8 diceplot-0.1.6/diceplot/MD5 | 15 diceplot-0.1.6/diceplot/NAMESPACE | 7 diceplot-0.1.6/diceplot/R/dominoplot.R | 451 ++++++++---- diceplot-0.1.6/diceplot/R/utils.R | 431 +++++++++++ diceplot-0.1.6/diceplot/man/create_custom_domino_legends.Rd |only diceplot-0.1.6/diceplot/man/domino_plot.Rd | 85 +- diceplot-0.1.6/diceplot/man/geom_dice_sf.Rd |only diceplot-0.1.6/diceplot/tests/test_diceplots.R | 2 10 files changed, 842 insertions(+), 157 deletions(-)
Title: Behavior-Driven Development for R
Description: Write executable specifications in a natural language that describes how your code should behave.
Write specifications in feature files using 'Gherkin' language and execute them using functions implemented in R.
Use them as an extension to your 'testthat' tests to provide a high level description of how your code works.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between cucumber versions 1.2.0 dated 2025-02-24 and 1.2.1 dated 2025-03-20
cucumber-1.2.0/cucumber/inst/examples/hooks_after_error/tests/testthat/steps |only cucumber-1.2.1/cucumber/DESCRIPTION | 6 cucumber-1.2.1/cucumber/MD5 | 24 +-- cucumber-1.2.1/cucumber/NAMESPACE | 1 cucumber-1.2.1/cucumber/NEWS.md | 4 cucumber-1.2.1/cucumber/R/hooks.R | 3 cucumber-1.2.1/cucumber/R/parse_token.R | 1 cucumber-1.2.1/cucumber/inst/doc/bdd.html | 2 cucumber-1.2.1/cucumber/inst/examples/hooks/tests/testthat/steps/steps.R | 8 - cucumber-1.2.1/cucumber/inst/examples/hooks_after_error/tests/testthat/setup-steps.R |only cucumber-1.2.1/cucumber/inst/examples/hooks_after_error/tests/testthat/test-cucumber.R | 2 cucumber-1.2.1/cucumber/tests/testthat/_snaps/examples.md | 68 ++++++++-- cucumber-1.2.1/cucumber/tests/testthat/test-examples.R | 31 +++- cucumber-1.2.1/cucumber/tests/testthat/test-hooks.R | 23 +++ 14 files changed, 133 insertions(+), 40 deletions(-)
Title: Computation and Visualisation of Atmospheric Convective
Parameters
Description: Allow to compute and visualise convective parameters commonly
used in the operational prediction of severe convective storms. Core algorithm
is based on a highly optimized 'C++' code linked into 'R' via 'Rcpp'. Highly
efficient engine allows to derive thermodynamic and kinematic parameters from
large numerical datasets such as reanalyses or operational Numerical Weather
Prediction models in a reasonable amount of time. Package has been developed
since 2017 by research meteorologists specializing in severe thunderstorms.
The most relevant methods used in the package based on the following publications
Stipanuk (1973) <https://apps.dtic.mil/sti/pdfs/AD0769739.pdf>,
McCann et al. (1994) <doi:10.1175/1520-0434(1994)009%3C0532:WNIFFM%3E2.0.CO;2>,
Bunkers et al. (2000) <doi:10.1175/1520-0434(2000)015%3C0061:PSMUAN%3E2.0.CO;2>,
Corfidi et al. (2003) <doi:10.1175/1520-0434(2003)018%3C0997:CPAMPF%3E2.0.CO;2>,
Showalter (1953) <doi:10.1175/1520-0477-34.6.250>,
Coffe [...truncated...]
Author: Bartosz Czernecki [aut, cre] ,
Mateusz Taszarek [aut] ,
Piotr Szuster [aut]
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between thunder versions 1.1.3 dated 2023-11-10 and 1.1.4 dated 2025-03-20
thunder-1.1.3/thunder/R/wobf.R |only thunder-1.1.4/thunder/DESCRIPTION | 24 thunder-1.1.4/thunder/MD5 | 32 thunder-1.1.4/thunder/NAMESPACE | 1 thunder-1.1.4/thunder/NEWS.md | 6 thunder-1.1.4/thunder/R/get_sounding.R | 14 thunder-1.1.4/thunder/R/radiosonde_utils.R | 1 thunder-1.1.4/thunder/README.md | 3 thunder-1.1.4/thunder/build/vignette.rds |binary thunder-1.1.4/thunder/inst/doc/convective-parameters-and-technical-details.R | 2 thunder-1.1.4/thunder/inst/doc/convective-parameters-and-technical-details.html | 849 +++++++--- thunder-1.1.4/thunder/inst/doc/getstarted.R | 2 thunder-1.1.4/thunder/inst/doc/getstarted.html | 492 +++-- thunder-1.1.4/thunder/inst/doc/miscellaneous.R | 2 thunder-1.1.4/thunder/inst/doc/miscellaneous.html | 77 thunder-1.1.4/thunder/man/get_sounding.Rd | 8 thunder-1.1.4/thunder/src/main.cpp | 8 thunder-1.1.4/thunder/tests/testthat/Rplots.pdf |only 18 files changed, 982 insertions(+), 539 deletions(-)
Title: Network Structural Equation Modeling
Description: Several methods have been developed to integrate structural equation modeling techniques with network data analysis to examine the relationship between network and non-network data. Both node-based and edge-based information can be extracted from the network data to be used as observed variables in structural equation modeling. To facilitate the application of these methods, model specification can be performed in the familiar syntax of the 'lavaan' package, ensuring ease of use for researchers. Technical details and examples can be found at <https://bigsem.psychstat.org>.
Author: Zhiyong Zhang [aut, cre] ,
Ziqian Xu [aut]
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>
Diff between networksem versions 0.2 dated 2025-01-31 and 0.3 dated 2025-03-20
DESCRIPTION | 9 +++++---- MD5 | 9 ++++++--- R/friend_data.R |only R/networkFun_edge.R | 2 +- R/networkFun_edge_LSM.R | 2 +- data |only man/friend_data.Rd |only 7 files changed, 13 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-08 0.3.1
2023-02-06 0.3.0
2023-01-23 0.2.2
2023-01-16 0.2.1
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.3 dated 2025-03-18 and 1.1.4 dated 2025-03-20
renv-1.1.3/renv/inst/repos/src/contrib/renv_1.1.3.tar.gz |only renv-1.1.4/renv/DESCRIPTION | 6 - renv-1.1.4/renv/MD5 | 39 +++++----- renv-1.1.4/renv/NEWS.md | 15 +++ renv-1.1.4/renv/R/abi.R | 9 +- renv-1.1.4/renv/R/available-packages.R | 3 renv-1.1.4/renv/R/cran.R | 28 +++++++ renv-1.1.4/renv/R/dependencies.R | 10 ++ renv-1.1.4/renv/R/package.R | 6 + renv-1.1.4/renv/R/ppm.R | 8 -- renv-1.1.4/renv/R/repos.R | 33 +++++--- renv-1.1.4/renv/R/snapshot.R | 19 +++- renv-1.1.4/renv/inst/repos/src/contrib/PACKAGES | 4 - renv-1.1.4/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.1.4/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.1.4/renv/inst/repos/src/contrib/renv_1.1.4.tar.gz |only renv-1.1.4/renv/man/sysreqs.Rd | 5 - renv-1.1.4/renv/tests/testthat/resources/empty-yaml-header.Rmd |only renv-1.1.4/renv/tests/testthat/test-dependencies.R | 6 + renv-1.1.4/renv/tests/testthat/test-init.R | 4 - renv-1.1.4/renv/tests/testthat/test-lock.R | 18 ++++ renv-1.1.4/renv/tests/testthat/test-snapshot.R | 25 ++++++ 22 files changed, 184 insertions(+), 54 deletions(-)
Title: Client for Delphi's 'Epidata' API
Description: The Delphi 'Epidata' API provides real-time access to
epidemiological surveillance data for influenza, 'COVID-19', and other
diseases for the USA at various geographical resolutions, both from
official government sources such as the Center for Disease Control
(CDC) and Google Trends and private partners such as Facebook and
Change 'Healthcare'. It is built and maintained by the Carnegie Mellon
University Delphi research group. To cite this API: David C. Farrow,
Logan C. Brooks, Aaron 'Rumack', Ryan J. 'Tibshirani', 'Roni'
'Rosenfeld' (2015). Delphi 'Epidata' API.
<https://github.com/cmu-delphi/delphi-epidata>.
Author: Logan Brooks [aut],
Dmitry Shemetov [aut],
Samuel Gratzl [aut],
David Weber [ctb, cre],
Nat DeFries [ctb],
Alex Reinhart [ctb],
Daniel J. McDonald [ctb],
Kean Ming Tan [ctb],
Will Townes [ctb],
George Haff [ctb],
Kathryn Mazaitis [ctb]
Maintainer: David Weber <davidweb@andrew.cmu.edu>
Diff between epidatr versions 1.2.0 dated 2024-06-20 and 1.2.1 dated 2025-03-20
epidatr-1.2.0/epidatr/man/cache_epidata_call.Rd |only epidatr-1.2.0/epidatr/man/fetch_tbl.Rd |only epidatr-1.2.1/epidatr/DESCRIPTION | 65 - epidatr-1.2.1/epidatr/MD5 | 60 - epidatr-1.2.1/epidatr/NAMESPACE | 4 epidatr-1.2.1/epidatr/NEWS.md | 5 epidatr-1.2.1/epidatr/R/cache.R | 144 +- epidatr-1.2.1/epidatr/R/covidcast.R | 33 epidatr-1.2.1/epidatr/R/endpoints.R | 6 epidatr-1.2.1/epidatr/R/epidatacall.R | 75 - epidatr-1.2.1/epidatr/R/utils.R | 20 epidatr-1.2.1/epidatr/README.md | 3 epidatr-1.2.1/epidatr/build/vignette.rds |binary epidatr-1.2.1/epidatr/inst/doc/epidatr.R | 77 - epidatr-1.2.1/epidatr/inst/doc/epidatr.Rmd | 24 epidatr-1.2.1/epidatr/inst/doc/epidatr.html | 833 ++++++++-------- epidatr-1.2.1/epidatr/inst/doc/signal-discovery.R | 116 +- epidatr-1.2.1/epidatr/inst/doc/signal-discovery.html | 659 ++++++++---- epidatr-1.2.1/epidatr/inst/doc/versioned-data.R | 18 epidatr-1.2.1/epidatr/inst/doc/versioned-data.html | 497 ++++++--- epidatr-1.2.1/epidatr/man/check_for_cache_warnings.Rd |only epidatr-1.2.1/epidatr/man/check_is_cachable.Rd | 17 epidatr-1.2.1/epidatr/man/clear_cache.Rd | 6 epidatr-1.2.1/epidatr/man/covidcast_epidata.Rd | 12 epidatr-1.2.1/epidatr/man/epidatr-package.Rd | 2 epidatr-1.2.1/epidatr/man/fetch_args_list.Rd | 6 epidatr-1.2.1/epidatr/man/is_cache_enabled.Rd |only epidatr-1.2.1/epidatr/man/pub_covid_hosp_facility.Rd | 4 epidatr-1.2.1/epidatr/man/pvt_norostat.Rd | 2 epidatr-1.2.1/epidatr/tests/testthat/test-cache.R | 62 - epidatr-1.2.1/epidatr/tests/testthat/test-epidatacall.R | 39 epidatr-1.2.1/epidatr/tests/testthat/test-request.R | 1 epidatr-1.2.1/epidatr/vignettes/epidatr.Rmd | 24 33 files changed, 1703 insertions(+), 1111 deletions(-)
Title: Handle Air Quality Data from the European Environment Agency
Data Portal
Description: This software downloads and manages air quality data from the European Environmental Agency (EEA) dataflow (<https://www.eea.europa.eu/data-and-maps/data/aqereporting-9>).
See the web page <https://eeadmz1-downloads-webapp.azurewebsites.net/> for details on the EEA's Air Quality Download Service.
The package allows dynamically mapping the stations, summarising and time aggregating the measurements and building spatial interpolation maps.
See the web page <https://www.eea.europa.eu/en> for further information on EEA activities and history.
Further details, as well as, an extended vignette of the main functions included in the package, are available at the GitHub web page dedicated to the project.
Author: Paolo Maranzano [aut, cre, cph]
,
Riccardo Borgoni [aut, cph] ,
Samir Doghmi [aut, cph],
Agostino Tassan Mazzocco [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between EEAaq versions 1.0.0 dated 2025-02-06 and 1.0.1 dated 2025-03-20
DESCRIPTION | 16 MD5 | 54 +- R/EEAaq_export.R | 66 --- R/EEAaq_get_data.R | 722 ++++++++++++--------------------- R/EEAaq_get_dataframe.R | 15 R/EEAaq_get_stations.R | 26 - R/EEAaq_idw_map.R | 951 ++++++++++++++++++-------------------------- R/EEAaq_import.R | 44 +- R/EEAaq_map_stations.R | 724 +++++++++++++-------------------- R/EEAaq_summary.R | 27 - R/EEAaq_time_aggregate.R | 26 + R/code_extr.R | 4 R/get_LAU.R | 2 R/get_NUTS.R | 1 R/get_pollutant.R | 6 R/get_stations.R | 11 R/handle_dates.R | 1 R/is_EEAaq_df.R | 19 man/EEAaq_export.Rd | 28 - man/EEAaq_get_data.Rd | 82 +-- man/EEAaq_get_dataframe.Rd | 15 man/EEAaq_get_stations.Rd | 4 man/EEAaq_idw_map.Rd | 111 +++-- man/EEAaq_import.Rd | 38 + man/EEAaq_map_stations.Rd | 82 ++- man/EEAaq_summary.Rd | 27 - man/EEAaq_time_aggregate.Rd | 26 + man/is_EEAaq_df.Rd | 19 28 files changed, 1360 insertions(+), 1787 deletions(-)
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
Francois Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between questionr versions 0.7.8 dated 2023-01-31 and 0.8.0 dated 2025-03-20
DESCRIPTION | 18 +- MD5 | 39 +++-- NAMESPACE | 3 NEWS.md | 6 R/iorder.R | 10 - R/irec.R | 16 +- R/odds.ratio.R | 101 +++++++-------- R/recode.R | 77 ++++++----- R/table.multi.R | 74 ++++++----- R/tables.R | 280 +++++++++++++++++++++++++++++++++--------- R/tools.R | 8 - R/weighting.R | 209 +++++++++++++++---------------- build/vignette.rds |binary inst/doc/recoding_addins.html | 184 ++++++++++++++++----------- man/cprop.Rd | 8 - man/freq.Rd | 2 man/freqtable.Rd |only man/ltabs.Rd | 2 man/prop.Rd | 8 - man/rprop.Rd | 8 - tests/testthat/test_tables.R | 101 +++++++++++++++ 21 files changed, 734 insertions(+), 420 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.13 dated 2025-02-15 and 1.14 dated 2025-03-20
DESCRIPTION | 6 MD5 | 60 ++++---- NEWS.md | 23 +++ R/RcppExports.R | 4 R/class-workbook-wrappers.R | 48 ++++--- R/class-workbook.R | 92 ++++++++----- R/class-worksheet.R | 2 R/helper-functions.R | 6 R/read.R | 1 R/utils.R | 147 +++++++++++++++------ R/wb_functions.R | 10 + R/wb_load.R | 6 R/write.R | 25 +++ R/write_xlsx.R | 11 + README.md | 9 - build/vignette.rds |binary inst/WORDLIST | 1 man/fmt_txt.Rd | 26 ++- man/wbWorkbook.Rd | 4 man/wb_add_font.Rd | 30 ++-- man/wb_save.Rd | 18 ++ src/RcppExports.cpp | 14 ++ src/strings_xml.cpp | 2 src/write_file.cpp | 195 +++++++++++++++++++++++++++++ tests/testthat/test-formulas.R | 13 + tests/testthat/test-loading_workbook.R | 28 ++++ tests/testthat/test-read_from_created_wb.R | 23 +++ tests/testthat/test-read_sources.R | 12 + tests/testthat/test-strings_xml.R | 2 tests/testthat/test-utils.R | 56 ++++++++ tests/testthat/test-write.R | 16 ++ 31 files changed, 721 insertions(+), 169 deletions(-)
Title: Creates Safety Results Summary in XML to Upload to EudraCT, or
ClinicalTrials.gov
Description: The remit of the European Clinical Trials Data Base (EudraCT <https://eudract.ema.europa.eu/> ), or ClinicalTrials.gov <https://clinicaltrials.gov/>, is to provide open access to summaries of all registered clinical trial results; thus aiming to prevent non-reporting of negative results and provide open-access to results to inform future research. The amount of information required and the format of the results, however, imposes a large extra workload at the end of studies on clinical trial units. In particular, the adverse-event-reporting component requires entering: each unique combination of treatment group and safety event; for every such event above, a further 4 pieces of information (body system, number of occurrences, number of subjects, number exposed) for non-serious events, plus an extra three pieces of data for serious adverse events (numbers of causally related events, deaths, causally related deaths). This package prepares the required statistics needed by Eudr [...truncated...]
Author: Simon Bond [cre],
Beatrice Pantaleo [aut]
Maintainer: Simon Bond <simon.bond7@nhs.net>
Diff between eudract versions 1.0.3 dated 2025-01-13 and 1.0.4 dated 2025-03-20
DESCRIPTION | 8 MD5 | 168 NEWS.md | 102 R/clintrials_gov_convert.R | 140 R/clintrials_gov_upload.R | 186 R/eudract_convert.R | 72 R/incidence_table.R | 100 R/safety.R | 54 R/safety_summary.R | 572 R/simple_safety_xml.R | 120 R/soc_code.R | 28 README.md | 9 build/vignette.rds |binary inst/doc/eudract.R | 18 inst/doc/eudract.Rmd | 286 inst/doc/eudract.html | 10 inst/doc/standard_reporting.R | 8 inst/doc/standard_reporting.Rmd | 182 inst/doc/standard_reporting.html | 6 inst/extdata/1234.xml | 454 inst/extdata/ProtocolRecordSchema.xsd | 1452 +- inst/extdata/RRSUploadSchema.xsd | 1368 +- inst/extdata/adverseEvents.xsd | 570 inst/extdata/ct_safety_upload.xml | 2904 ++-- inst/extdata/find_replace.xslt | 48 inst/extdata/safety__upload.xml | 3676 ++--- inst/extdata/simple.xsd | 386 inst/extdata/simpleToCtGov.xslt | 248 inst/extdata/simpleToEudraCT.xslt | 288 inst/extdata/soc.xml | 276 man/append_xml.Rd | 24 man/clintrials_gov_convert.Rd | 134 man/clintrials_gov_upload.Rd | 170 man/create.safety_summary.Rd | 42 man/df_to_char.Rd | 30 man/dot_plot.Rd | 124 man/eudract_convert.Rd | 116 man/figures/README-report_example-1.png |binary man/incidence_table.Rd | 66 man/plot.dot_plot.Rd | 32 man/print.dot_plot.Rd | 32 man/print.safety_summary.Rd | 34 man/relative_risk.Rd | 156 man/safety.Rd | 66 man/safety_summary.Rd | 134 man/simple_safety_xml.Rd | 104 man/soc_code.Rd | 48 tests/testthat.R | 10 tests/testthat/1234.xml | 454 tests/testthat/GROUP.csv | 8 tests/testthat/NONSERIOUS.csv | 164 tests/testthat/Rplots.pdf |binary tests/testthat/SERIOUS.csv | 164 tests/testthat/_snaps/dotplot/dotplot-1group.svg | 208 tests/testthat/_snaps/dotplot/dotplot-3groups.svg | 772 - tests/testthat/_snaps/dotplot/dotplot-ref-rr.svg | 488 tests/testthat/_snaps/dotplot/dotplot-ref.svg | 472 tests/testthat/_snaps/dotplot/dotplot.svg | 472 tests/testthat/bak_study_file.xml | 4030 +++--- tests/testthat/ct.xml | 3316 ++--- tests/testthat/data/all_soc.csv | 54 tests/testthat/data/all_soc_v2.csv | 56 tests/testthat/data/events.csv | 3278 ++--- tests/testthat/data/fix_ucl.R | 52 tests/testthat/data/multiple_soc.csv | 6 tests/testthat/data/no_aes.csv | 4 tests/testthat/data/no_saes.csv | 4 tests/testthat/data/output_from_ucl.xml |14114 +++++++++++----------- tests/testthat/data/repeat_occurrences.csv | 8 tests/testthat/data/socless.xml | 9846 +++++++-------- tests/testthat/data/sparse.csv | 6 tests/testthat/events.csv | 3328 ++--- tests/testthat/reference/simple.xml | 2904 ++-- tests/testthat/reference/table_ct.xml | 4016 +++--- tests/testthat/reference/table_eudract.xml | 4972 +++---- tests/testthat/simple.xml | 2904 ++-- tests/testthat/study_file.xml | 4030 +++--- tests/testthat/table_ct.xml | 4016 +++--- tests/testthat/table_eudract.xml | 3894 +++--- tests/testthat/test_append_xml.R | 36 tests/testthat/test_basic.R | 808 - tests/testthat/test_bea.R | 74 tests/testthat/test_errors.R | 566 vignettes/eudract.Rmd | 286 vignettes/standard_reporting.Rmd | 182 85 files changed, 42520 insertions(+), 42533 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-18 0.2.2
2023-10-18 0.2.1
2020-12-05 0.2.0
2018-12-10 0.1.0
2015-11-16 0.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-25 1.1.0
2023-12-21 1.0.2
Title: Inhomogeneous K- And Pair Correlation Functions Using Global
Estimators
Description: Second-order summary statistics K- and pair-correlation functions describe
interactions in point pattern data. This package provides computations to estimate those
statistics on inhomogeneous point processes, using the methods of
in T Shaw, J Møller, R Waagepetersen, 2020 <doi:10.48550/arXiv.2004.00527>.
Author: Thomas Shaw [aut, cre],
Ege Rubak [ctb],
Adrian Baddeley [ctb],
Rolf Turner [ctb]
Maintainer: Thomas Shaw <tshaw20@utk.edu>
Diff between globalKinhom versions 0.1.9 dated 2024-10-07 and 0.1.10 dated 2025-03-20
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- R/isotropic_pcf.R | 4 ++++ build/partial.rdb |binary 4 files changed, 13 insertions(+), 7 deletions(-)
Title: REST API Client for the 'PGS' Catalog
Description: Programmatic access to the 'PGS' Catalog.
This package provides easy access to 'PGS' Catalog data by
accessing the REST API <https://www.pgscatalog.org/rest/>.
Author: Ramiro Magno [aut, cre] ,
Isabel Duarte [aut] ,
Ana-Teresa Maia [aut] ,
CINTESIS [cph, fnd],
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between quincunx versions 0.1.7 dated 2023-07-04 and 0.1.9 dated 2025-03-20
quincunx-0.1.7/quincunx/R/utils-pipe.R |only quincunx-0.1.7/quincunx/man/pipe.Rd |only quincunx-0.1.9/quincunx/DESCRIPTION | 31 +-- quincunx-0.1.9/quincunx/MD5 | 76 ++++----- quincunx-0.1.9/quincunx/NAMESPACE | 2 quincunx-0.1.9/quincunx/NEWS.md | 12 + quincunx-0.1.9/quincunx/R/count.R | 4 quincunx-0.1.9/quincunx/R/delay.R |only quincunx-0.1.9/quincunx/R/get.R | 6 quincunx-0.1.9/quincunx/R/get_ancestry_categories.R | 11 - quincunx-0.1.9/quincunx/R/get_cohorts.R | 24 +- quincunx-0.1.9/quincunx/R/get_performance_metrics.R | 18 +- quincunx-0.1.9/quincunx/R/get_publications.R | 36 ++-- quincunx-0.1.9/quincunx/R/get_releases.R | 13 - quincunx-0.1.9/quincunx/R/get_sample_sets.R | 18 +- quincunx-0.1.9/quincunx/R/get_scores.R | 27 ++- quincunx-0.1.9/quincunx/R/get_trait_categories.R | 13 - quincunx-0.1.9/quincunx/R/get_traits.R | 37 ++-- quincunx-0.1.9/quincunx/R/id_mapping.R | 82 ++++------ quincunx-0.1.9/quincunx/R/parse-ancestry_categories.R | 12 - quincunx-0.1.9/quincunx/R/parse-cohorts.R | 50 +++--- quincunx-0.1.9/quincunx/R/parse-performance_metrics.R | 96 +++++------ quincunx-0.1.9/quincunx/R/parse-publications.R | 60 +++---- quincunx-0.1.9/quincunx/R/parse-releases.R | 58 +++---- quincunx-0.1.9/quincunx/R/parse-sample_sets.R | 42 ++--- quincunx-0.1.9/quincunx/R/parse-scores.R | 146 +++++++++--------- quincunx-0.1.9/quincunx/R/parse-trait_categories.R | 24 +- quincunx-0.1.9/quincunx/R/parse-traits.R | 88 +++++----- quincunx-0.1.9/quincunx/R/parse_estimate.R |only quincunx-0.1.9/quincunx/R/remap_id.R | 22 +- quincunx-0.1.9/quincunx/R/request.R | 7 quincunx-0.1.9/quincunx/R/unwrap_cohort.R | 4 quincunx-0.1.9/quincunx/R/unwrap_demographics.R | 30 +-- quincunx-0.1.9/quincunx/R/unwrap_efotrait.R | 4 quincunx-0.1.9/quincunx/R/unwrap_interval.R | 4 quincunx-0.1.9/quincunx/R/unwrap_publication.R | 9 - quincunx-0.1.9/quincunx/R/unwrap_sample.R | 18 +- quincunx-0.1.9/quincunx/README.md | 17 -- quincunx-0.1.9/quincunx/build/partial.rdb |binary quincunx-0.1.9/quincunx/man/request.Rd | 2 quincunx-0.1.9/quincunx/man/request_all.Rd | 2 41 files changed, 589 insertions(+), 516 deletions(-)
Title: Render Barcode Distribution Plots
Description: The function \code{barcode()}
produces a histogram-like plot of a distribution that shows
granularity in the data.
Author: John W. Emerson [aut, cre],
Walton A. Green [aut],
John A. Hartigan [aut],
Liya Xiang [ctb]
Maintainer: John W. Emerson <john.emerson@yale.edu>
Diff between barcode versions 1.3.0 dated 2022-05-10 and 1.4.0 dated 2025-03-20
DESCRIPTION | 30 +++- MD5 | 8 - R/barcode.R | 78 ++++++----- R/barcode.panel.R | 354 +++++++++++++++++++++++++++++++++--------------------- man/barcode.Rd | 4 5 files changed, 289 insertions(+), 185 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network. The result is automatically available upon completion. Modern
networking and concurrency, built on 'nanonext' and 'NNG' (Nanomsg Next
Gen), ensures reliable and efficient scheduling over fast inter-process
communications or TCP/IP secured by TLS. Distributed computing can launch
remote resources via SSH or cluster managers. An inherently queued
architecture handles many more tasks than available processes, and requires
no storage on the file system. Innovative features include support for
otherwise non-exportable reference objects, event-driven promises, and
asynchronous parallel map.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Hibiki AI Limited [cph],
Posit Software, PBC [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 2.1.0 dated 2025-02-07 and 2.2.0 dated 2025-03-20
mirai-2.1.0/mirai/man/register_cluster.Rd |only mirai-2.1.0/mirai/vignettes/shiny.Rmd.orig |only mirai-2.2.0/mirai/DESCRIPTION | 10 mirai-2.2.0/mirai/MD5 | 120 ++++---- mirai-2.2.0/mirai/NAMESPACE | 4 mirai-2.2.0/mirai/NEWS.md | 29 ++ mirai-2.2.0/mirai/R/daemon.R | 81 ++--- mirai-2.2.0/mirai/R/daemons.R | 303 ++++++++++----------- mirai-2.2.0/mirai/R/dispatcher.R | 37 +- mirai-2.2.0/mirai/R/launchers.R | 252 ++++++++---------- mirai-2.2.0/mirai/R/map.R | 162 ++++++----- mirai-2.2.0/mirai/R/mirai-package.R | 29 +- mirai-2.2.0/mirai/R/mirai.R | 336 +++++++++--------------- mirai-2.2.0/mirai/R/next.R | 57 +--- mirai-2.2.0/mirai/R/parallel.R | 126 +++------ mirai-2.2.0/mirai/R/promises.R | 92 +++++- mirai-2.2.0/mirai/README.md | 8 mirai-2.2.0/mirai/build/vignette.rds |binary mirai-2.2.0/mirai/inst/doc/databases.html | 26 + mirai-2.2.0/mirai/inst/doc/mirai.Rmd | 326 ++++++++++++++--------- mirai-2.2.0/mirai/inst/doc/mirai.html | 364 +++++++++++++++----------- mirai-2.2.0/mirai/inst/doc/parallel.Rmd | 18 - mirai-2.2.0/mirai/inst/doc/parallel.html | 46 +-- mirai-2.2.0/mirai/inst/doc/plumber.html | 26 + mirai-2.2.0/mirai/inst/doc/promises.Rmd | 37 ++ mirai-2.2.0/mirai/inst/doc/promises.html | 56 ++-- mirai-2.2.0/mirai/inst/doc/shiny.Rmd | 137 ++++++++- mirai-2.2.0/mirai/inst/doc/shiny.html | 155 +++++++++-- mirai-2.2.0/mirai/inst/doc/torch.html | 26 + mirai-2.2.0/mirai/man/as.promise.mirai.Rd | 23 - mirai-2.2.0/mirai/man/as.promise.mirai_map.Rd |only mirai-2.2.0/mirai/man/call_mirai.Rd | 65 +--- mirai-2.2.0/mirai/man/call_mirai_.Rd |only mirai-2.2.0/mirai/man/collect_mirai.Rd | 56 +--- mirai-2.2.0/mirai/man/daemon.Rd | 57 ++-- mirai-2.2.0/mirai/man/daemons.Rd | 202 ++++++-------- mirai-2.2.0/mirai/man/dispatcher.Rd | 21 - mirai-2.2.0/mirai/man/dot-flat.Rd | 13 mirai-2.2.0/mirai/man/everywhere.Rd | 57 +--- mirai-2.2.0/mirai/man/host_url.Rd | 40 +- mirai-2.2.0/mirai/man/is_mirai.Rd | 14 - mirai-2.2.0/mirai/man/is_mirai_error.Rd | 33 +- mirai-2.2.0/mirai/man/launch_local.Rd | 59 +--- mirai-2.2.0/mirai/man/make_cluster.Rd | 95 +++--- mirai-2.2.0/mirai/man/mirai-package.Rd | 20 - mirai-2.2.0/mirai/man/mirai.Rd | 108 +++---- mirai-2.2.0/mirai/man/mirai_map.Rd | 72 ++--- mirai-2.2.0/mirai/man/nextstream.Rd | 32 -- mirai-2.2.0/mirai/man/remote_config.Rd | 107 +++---- mirai-2.2.0/mirai/man/serial_config.Rd | 14 - mirai-2.2.0/mirai/man/status.Rd | 40 +- mirai-2.2.0/mirai/man/stop_mirai.Rd | 32 -- mirai-2.2.0/mirai/man/unresolved.Rd | 27 - mirai-2.2.0/mirai/man/with.miraiDaemons.Rd | 14 - mirai-2.2.0/mirai/tests/tests.R | 39 +- mirai-2.2.0/mirai/vignettes/mirai.Rmd | 326 ++++++++++++++--------- mirai-2.2.0/mirai/vignettes/mirai.Rmd.orig | 225 ++++++++++------ mirai-2.2.0/mirai/vignettes/parallel.Rmd | 18 - mirai-2.2.0/mirai/vignettes/parallel.Rmd.orig | 4 mirai-2.2.0/mirai/vignettes/precompile.R | 1 mirai-2.2.0/mirai/vignettes/promises.Rmd | 37 ++ mirai-2.2.0/mirai/vignettes/promises.Rmd.orig | 25 + mirai-2.2.0/mirai/vignettes/shiny.Rmd | 137 ++++++++- 63 files changed, 2742 insertions(+), 2134 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 0.8.2 dated 2025-01-16 and 0.8.3 dated 2025-03-20
DESCRIPTION | 8 MD5 | 12 NEWS.md | 4 R/addDrugUtilisation.R | 2 R/summariseDrugUtilisation.R | 6 inst/doc/create_cohorts.html | 118 - inst/doc/drug_utilisation.html | 2492 ++++++++++++++++++++--------------------- 7 files changed, 1323 insertions(+), 1319 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Transfer of Hydrograph from Gauged to Ungauged Catchments
Description: A geomorphology-based hydrological modelling for transferring
streamflow measurements from gauged to ungauged catchments. Inverse
modelling enables to estimate net rainfall from streamflow measurements
following Boudhraâ et al. (2018) <doi:10.1080/02626667.2018.1425801>.
Resulting net rainfall is then estimated on the ungauged catchments
by spatial interpolation in order to finally simulate streamflow
following de Lavenne et al. (2016) <doi:10.1002/2016WR018716>.
Author: Alban de Lavenne [aut, cre] ,
Christophe Cudennec [ths] ,
Tom Loree [ctb],
Herve Squividant [ctb]
Maintainer: Alban de Lavenne <alban.delavenne@inrae.fr>
Diff between transfR versions 1.1.0 dated 2025-02-05 and 1.1.4 dated 2025-03-20
DESCRIPTION | 8 MD5 | 42 ++-- NAMESPACE | 2 R/convolution.R | 3 R/hdist.R | 9 R/mixr.R | 235 +++++++++++++++++++---- R/rsimilarity.R | 194 +++---------------- R/rsimilarity_model.R |only R/weightr.R | 41 ++-- build/partial.rdb |binary build/vignette.rds |binary data/Blavet.rda |binary data/Oudon.rda |binary inst/doc/V01_get_started.html | 11 - inst/doc/V02_inputs_preparation_stars.html | 32 +-- inst/doc/V03_inputs_preparation_whitebox.R | 262 +++++++++++++------------- inst/doc/V03_inputs_preparation_whitebox.html | 15 - man/mixr.Rd | 63 +++++- man/rsimilarity.Rd | 72 +------ man/rsimilarity_model.Rd |only src/convolution.f90 |only src/gdist.f90 | 185 ++++++++---------- src/similarity_module.f90 |only src/transfR.c | 49 +++- 24 files changed, 642 insertions(+), 581 deletions(-)
Title: Measure Memory and CPU Usage for Parallel R Code
Description: Measures memory and CPU usage of R code by regularly taking
snapshots of calls to the system command 'ps'. The package provides an entry
point (albeit coarse) to profile usage of system resources by R code run
in parallel.
Author: Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between syrup versions 0.1.2 dated 2025-03-17 and 0.1.3 dated 2025-03-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/syrup.R | 2 +- man/syrup.Rd | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Probabilistic Factor Analysis for Spatially-Aware Dimension
Reduction
Description: Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations.
More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
Author: Wei Liu [aut, cre],
Xiao Zhang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between ProFAST versions 1.4 dated 2024-03-18 and 1.5 dated 2025-03-20
DESCRIPTION | 21 - MD5 | 56 ++-- NAMESPACE | 8 R/CoFAST.R | 2 R/iSCMEB.R | 6 R/main.R | 120 ++++++--- README.md | 10 build/vignette.rds |binary inst/doc/CosMx.R | 2 inst/doc/CosMx.html | 337 ++++++++++++++----------- inst/doc/FASTdlpfc.R | 2 inst/doc/FASTdlpfc.html | 428 ++++++++++++++++++-------------- inst/doc/FASTdlpfc2.R | 2 inst/doc/FASTdlpfc2.html | 613 +++++++++++++++++++++++++++-------------------- inst/doc/FASTsimu.R | 2 inst/doc/FASTsimu.html | 545 ++++++++++++++++++++++++----------------- inst/doc/pbmc3k.R | 2 inst/doc/pbmc3k.html | 345 +++++++++++++++----------- man/AddAdj.Rd | 2 man/AddParSettingFAST.Rd | 2 man/FAST.Rd | 2 man/IntegrateSRTData.Rd | 2 man/RunHarmonyLouvain.Rd | 2 man/RuniSCMEB.Rd | 2 man/iscmeb_run.Rd | 2 man/transferGeneNames.Rd | 10 src/DR_removebatch.cpp | 2 src/alignExp.cpp | 2 src/alignExps.cpp | 2 29 files changed, 1482 insertions(+), 1049 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates to be annotated
to express unspecified date components,
approximate or uncertain date components,
date ranges, and sets of dates.
This is useful for describing and analysing temporal information,
whether historical or recent, where date precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.5.2 dated 2025-03-07 and 0.5.3 dated 2025-03-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 10 ++++++++++ R/component_extract.R | 19 ++++++++++++++----- man/component_extract.Rd | 12 ++++++++++++ tests/testthat/test-component_extract.R | 11 +++++++---- 7 files changed, 54 insertions(+), 19 deletions(-)
Title: Visualize Contingency Tables Using Kite-Square Plots
Description: Create a kite-square plot for contingency tables using 'ggplot2', to display their relevant quantities in a single figure (marginal, conditional, expected, observed, chi-squared). The plot resembles a flying kite inside a square if the variables are independent, and deviates from this the more dependence exists.
Author: John Wiedenhoeft [aut, cre, cph]
Maintainer: John Wiedenhoeft <john.wiedenhoeft@medizin.uni-leipzig.de>
Diff between kitesquare versions 0.0.1 dated 2025-03-17 and 0.0.2 dated 2025-03-20
DESCRIPTION | 6 MD5 | 33 +++- NEWS.md | 5 R/kitesquare.R | 7 - README.md | 88 ++++++------ inst/body.qmd |only inst/doc/kitesquare.R | 172 ------------------------ inst/doc/kitesquare.pdf |binary inst/doc/kitesquare.qmd | 321 ---------------------------------------------- man/figures |only vignettes/kitesquare.bib | 6 vignettes/kitesquare.html | 32 ++-- vignettes/kitesquare.md | 5 vignettes/kitesquare.qmd | 321 ---------------------------------------------- 14 files changed, 106 insertions(+), 890 deletions(-)
Title: Access and Harmonize Childfree Demographic Data
Description: Reads demographic data from a variety of public data sources, extracting and harmonizing variables useful for the study of childfree individuals. The identification of childfree individuals and those with other family statuses uses Neal & Neal's (2024) "A Framework for Studying Adults who Neither have Nor Want Children" <doi:10.1177/10664807231198869>; A pre-print is available at <doi:10.31234/osf.io/fa89m>.
Author: Zachary Neal [aut, cre] ,
Jennifer Watling Neal [aut]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between childfree versions 0.0.3 dated 2024-09-04 and 0.0.4 dated 2025-03-20
DESCRIPTION | 11 MD5 | 26 - NEWS.md | 4 R/dhs.R | 58 +-- R/nsfg.R | 735 ++++++++++++++++++++++++++---------------------- R/soss.R | 49 +-- inst/doc/childfree.html | 28 - inst/doc/codebooks.Rmd | 16 - inst/doc/codebooks.html | 36 +- man/childfree.Rd | 3 man/dhs.Rd | 42 +- man/nsfg.Rd | 49 +-- man/soss.Rd | 38 +- vignettes/codebooks.Rmd | 16 - 14 files changed, 604 insertions(+), 507 deletions(-)
Title: Comprehensive Groups of Experiments Analysis for Numerous
Environments
Description: In many cases, experiments must be repeated across multiple seasons or locations to ensure applicability of findings. A single experiment conducted in one location and season may yield limited conclusions, as results can vary under different environmental conditions. In agricultural research, treatment × location and treatment × season interactions play a crucial role. Analyzing a series of experiments across diverse conditions allows for more generalized and reliable recommendations. The 'CANE' package facilitates the pooled analysis of experiments conducted over multiple years, seasons, or locations. It is designed to assess treatment interactions with environmental factors (such as location and season) using various experimental designs. The package supports pooled analysis of variance (ANOVA) for the following designs: (1) 'PooledCRD()': completely randomized design; (2) 'PooledRBD()': randomized block design; (3) 'PooledLSD()': Latin square design; (4) 'PooledSPD()': split plot de [...truncated...]
Author: Vinayaka [aut, cre] ,
T. Lakshmi Pathy [aut, ctb] ,
K. Gopalareddy [aut, ctb] ,
Shweta Kumari [aut, ctb] ,
P. Murali [aut, ctb] ,
P. Govindaraj [aut, ctb],
P. Rama Chandra Prasad [aut, ctb]
,
L.N. Vinaykumar [aut, ctb]
Maintainer: Vinayaka <vinayaka.b3vs@gmail.com>
Diff between CANE versions 0.1.0 dated 2025-03-19 and 0.1.1 dated 2025-03-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/PooledCRD.R | 4 ++-- R/PooledStPD.R | 6 +++--- man/PooledCRD.Rd | 4 ++-- man/PooledStPD.Rd | 6 +++--- 6 files changed, 18 insertions(+), 18 deletions(-)
Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is
reproducible, can be saved and meets academic standards for attribution.
Forked from 'wallace'. Code is split into modules that are loaded and linked
together automatically and each call one function. Guidance pages explain
modules to users and flexible logging informs them of any errors. Options
enable asynchronous operations, viewing of source code, interactive maps and
data tables. Use to create complex analytical applications, following best
practices in open science and software development. Includes functions for
automating repetitive development tasks and an example application at
run_shinyscholar() that requires
install.packages("shinyscholar", dependencies = TRUE). A guide to developing
applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph],
Tim Lucas [aut] ,
Jamie M. Kass [ctb],
Gonzalo E. Pinilla-Buitrago [ctb],
Andrea Paz [ctb],
Bethany A. Johnson [ctb],
Valentina Grisales-Betancur [ctb],
Dean Attali [ctb],
Matthew E. Aiello-Lammens [ctb],
Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>
Diff between shinyscholar versions 0.2.5 dated 2025-02-05 and 0.3.0 dated 2025-03-20
shinyscholar-0.2.5/shinyscholar/inst/app_skeleton/helper_functions.R |only shinyscholar-0.2.5/shinyscholar/inst/module_skeleton/skeleton.R |only shinyscholar-0.2.5/shinyscholar/inst/module_skeleton/skeleton_async.R |only shinyscholar-0.3.0/shinyscholar/DESCRIPTION | 6 shinyscholar-0.3.0/shinyscholar/MD5 | 124 +++++--- shinyscholar-0.3.0/shinyscholar/NAMESPACE | 1 shinyscholar-0.3.0/shinyscholar/NEWS.md | 26 + shinyscholar-0.3.0/shinyscholar/R/create_template.R | 113 +++----- shinyscholar-0.3.0/shinyscholar/R/custom_modules.R | 93 +++--- shinyscholar-0.3.0/shinyscholar/R/helper_functions.R | 19 + shinyscholar-0.3.0/shinyscholar/R/metadata.R | 1 shinyscholar-0.3.0/shinyscholar/R/save_and_load.R | 1 shinyscholar-0.3.0/shinyscholar/README.md | 77 +++++ shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/global.Rmd | 6 shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/helper_functions.Rmd |only shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/load.Rmd | 25 + shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/mapping.Rmd | 12 shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/save.Rmd | 1 shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/server.Rmd | 22 + shinyscholar-0.3.0/shinyscholar/inst/app_skeleton/ui.Rmd | 19 - shinyscholar-0.3.0/shinyscholar/inst/extdata/test_test.R | 5 shinyscholar-0.3.0/shinyscholar/inst/module_skeleton/skeletonR.Rmd |only shinyscholar-0.3.0/shinyscholar/inst/module_skeleton/skeleton_asyncR.Rmd |only shinyscholar-0.3.0/shinyscholar/inst/shiny/Rmd/gtext_plot.Rmd | 6 shinyscholar-0.3.0/shinyscholar/inst/shiny/Rmd/references.bib |only shinyscholar-0.3.0/shinyscholar/inst/shiny/Rmd/text_about.Rmd | 2 shinyscholar-0.3.0/shinyscholar/inst/shiny/Rmd/text_intro_tab.Rmd | 4 shinyscholar-0.3.0/shinyscholar/inst/shiny/Rmd/userReport_intro.Rmd | 4 shinyscholar-0.3.0/shinyscholar/inst/shiny/common.R | 15 + shinyscholar-0.3.0/shinyscholar/inst/shiny/global.R | 3 shinyscholar-0.3.0/shinyscholar/inst/shiny/helpers.R | 4 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/core_code.R | 10 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/core_load.R | 23 + shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/core_mapping.R | 16 - shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/core_save.R | 3 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_auto.R |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_auto.Rmd |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_auto.md |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_auto.yml |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_hist.R | 28 +- shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_hist.Rmd | 3 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_scatter.R | 19 - shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_semi.R |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_semi.Rmd |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_semi.md |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/plot_semi.yml |only shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/rep_markdown.R | 32 ++ shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/rep_refPackages.R | 10 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/select_async.R | 4 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/select_query.R | 4 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/select_user.R | 13 shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/template_create.R | 36 +- shinyscholar-0.3.0/shinyscholar/inst/shiny/modules/template_create.md | 2 shinyscholar-0.3.0/shinyscholar/inst/shiny/server.R | 23 + shinyscholar-0.3.0/shinyscholar/inst/shiny/ui.R | 36 +- shinyscholar-0.3.0/shinyscholar/man/create_module.Rd | 6 shinyscholar-0.3.0/shinyscholar/man/create_template.Rd | 2 shinyscholar-0.3.0/shinyscholar/man/metadata.Rd | 1 shinyscholar-0.3.0/shinyscholar/man/register_module.Rd | 1 shinyscholar-0.3.0/shinyscholar/man/reset_data.Rd |only shinyscholar-0.3.0/shinyscholar/man/save_and_load.Rd | 1 shinyscholar-0.3.0/shinyscholar/tests/testthat/helper_plot_auto.R |only shinyscholar-0.3.0/shinyscholar/tests/testthat/helper_plot_semi.R |only shinyscholar-0.3.0/shinyscholar/tests/testthat/helper_save_and_load.R | 5 shinyscholar-0.3.0/shinyscholar/tests/testthat/helper_save_load.R | 1 shinyscholar-0.3.0/shinyscholar/tests/testthat/test-create_template.R | 45 +-- shinyscholar-0.3.0/shinyscholar/tests/testthat/test-downloads.R | 25 + shinyscholar-0.3.0/shinyscholar/tests/testthat/test-metadata.R | 3 shinyscholar-0.3.0/shinyscholar/tests/testthat/test-plot_auto.R |only shinyscholar-0.3.0/shinyscholar/tests/testthat/test-plot_semi.R |only shinyscholar-0.3.0/shinyscholar/tests/testthat/test-save_and_load.R | 138 +++++----- shinyscholar-0.3.0/shinyscholar/tests/testthat/test-save_load.R | 30 ++ shinyscholar-0.3.0/shinyscholar/tests/testthat/test-select_user.R | 12 73 files changed, 737 insertions(+), 384 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.6-2 dated 2025-01-29 and 1.6-3 dated 2025-03-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + R/R.R | 2 ++ R/mmlt.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 9 +++++++++ 7 files changed, 23 insertions(+), 11 deletions(-)
Title: Power and Sample Size Calculation for Non-Proportional Hazards
and Beyond
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168). The package can also be used for continuous, binary, and count data. For continuous data, it can handle missing data through mixed-model for repeated measures (MMRM). In crossover designs, it can estimate direct treatment effects while accounting for carryover effects. For binary data, it can design Simon's 2-stage, modified toxicity probability-2 (mTPI-2), a [...truncated...]
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between lrstat versions 0.2.12 dated 2025-01-17 and 0.2.13 dated 2025-03-20
lrstat-0.2.12/lrstat/R/runShinyApp.R |only lrstat-0.2.12/lrstat/man/runShinyApp.Rd |only lrstat-0.2.13/lrstat/DESCRIPTION | 8 lrstat-0.2.13/lrstat/MD5 | 71 lrstat-0.2.13/lrstat/NAMESPACE | 5 lrstat-0.2.13/lrstat/NEWS.md | 18 lrstat-0.2.13/lrstat/R/RcppExports.R | 108 + lrstat-0.2.13/lrstat/R/getDesignMeans.R | 813 +++++++++- lrstat-0.2.13/lrstat/R/parameter_descriptions.R | 4 lrstat-0.2.13/lrstat/R/prints.R | 378 +++- lrstat-0.2.13/lrstat/R/runShinyApp_lrstat.R |only lrstat-0.2.13/lrstat/build/vignette.rds |binary lrstat-0.2.13/lrstat/man/covrmst.Rd | 4 lrstat-0.2.13/lrstat/man/getDesignMeanDiffCarryover.Rd | 98 - lrstat-0.2.13/lrstat/man/getDesignMeanDiffCarryoverEquiv.Rd |only lrstat-0.2.13/lrstat/man/kmest.Rd | 7 lrstat-0.2.13/lrstat/man/kmpower1s.Rd | 14 lrstat-0.2.13/lrstat/man/kmpowerequiv.Rd | 4 lrstat-0.2.13/lrstat/man/lrstat1.Rd | 3 lrstat-0.2.13/lrstat/man/natrisk.Rd | 4 lrstat-0.2.13/lrstat/man/nevent.Rd | 4 lrstat-0.2.13/lrstat/man/nevent2.Rd | 4 lrstat-0.2.13/lrstat/man/param_maxFollowupTime.Rd | 4 lrstat-0.2.13/lrstat/man/print.designMeanDiffCarryover.Rd | 6 lrstat-0.2.13/lrstat/man/print.designMeanDiffCarryoverEquiv.Rd |only lrstat-0.2.13/lrstat/man/rmpower1s.Rd | 17 lrstat-0.2.13/lrstat/man/rmpowerequiv.Rd | 2 lrstat-0.2.13/lrstat/man/rmstat.Rd | 6 lrstat-0.2.13/lrstat/man/runShinyApp_lrstat.Rd |only lrstat-0.2.13/lrstat/man/survsplit.Rd |only lrstat-0.2.13/lrstat/src/RcppExports.cpp | 23 lrstat-0.2.13/lrstat/src/kmstat.cpp | 323 +-- lrstat-0.2.13/lrstat/src/logistic_regression.cpp | 63 lrstat-0.2.13/lrstat/src/lrstat.cpp | 81 lrstat-0.2.13/lrstat/src/rmstat.cpp | 306 +-- lrstat-0.2.13/lrstat/src/survival_analysis.cpp | 173 +- lrstat-0.2.13/lrstat/src/survival_analysis.h | 4 lrstat-0.2.13/lrstat/src/utilities.cpp | 47 lrstat-0.2.13/lrstat/tests/testthat/test-kmest.R | 8 lrstat-0.2.13/lrstat/tests/testthat/test-survfit_phregr.R | 61 40 files changed, 1862 insertions(+), 809 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Jose Carlos [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.30 dated 2025-02-21 and 3.33 dated 2025-03-20
modEvA-3.30/modEvA/NEWS |only modEvA-3.33/modEvA/DESCRIPTION | 8 modEvA-3.33/modEvA/MD5 | 32 +-- modEvA-3.33/modEvA/NEWS.md |only modEvA-3.33/modEvA/R/AUC.R | 69 +++++- modEvA-3.33/modEvA/R/MillerCalib.R | 2 modEvA-3.33/modEvA/R/lollipop.R | 2 modEvA-3.33/modEvA/R/mod2obspred.R | 20 + modEvA-3.33/modEvA/R/plotCoeffs.R | 40 ++- modEvA-3.33/modEvA/R/varImp.R | 317 +++++++++++++++++++------------ modEvA-3.33/modEvA/man/AUC.Rd | 9 modEvA-3.33/modEvA/man/MillerCalib.Rd | 2 modEvA-3.33/modEvA/man/lollipop.Rd | 2 modEvA-3.33/modEvA/man/mod2obspred.Rd | 20 + modEvA-3.33/modEvA/man/modEvA-package.Rd | 4 modEvA-3.33/modEvA/man/plotCoeffs.Rd | 23 +- modEvA-3.33/modEvA/man/threshMeasures.Rd | 2 modEvA-3.33/modEvA/man/varImp.Rd | 54 +++-- 18 files changed, 397 insertions(+), 209 deletions(-)
Title: The Free Group
Description: The free group in R; juxtaposition is represented by a
plus. Includes inversion, multiplication by a scalar,
group-theoretic power operation, and Tietze forms. To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2212.05883>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.1-9 dated 2025-01-30 and 1.2-0 dated 2025-03-20
DESCRIPTION | 6 ++-- MD5 | 24 ++++++++--------- NEWS.md | 6 +++- R/freeops.R | 6 ++-- build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary inst/doc/freegroup.R | 61 ++++++++++++++++++++++++++++--------------- inst/doc/freegroup.Rnw | 64 +++++++++++++++++++++++++++++++++++----------- inst/doc/freegroup.pdf |binary man/Ops.free.Rd | 8 +++++ tests/testthat/test_aaa.R | 9 +++++- vignettes/freegroup.Rnw | 64 +++++++++++++++++++++++++++++++++++----------- 13 files changed, 175 insertions(+), 73 deletions(-)
Title: Automated Stacked Ensemble Classifier for Severe Class Imbalance
Description: A stacking solution for modeling imbalanced and severely skewed data. It automates the process of building homogeneous or heterogeneous stacked ensemble models by selecting "best" models according to different criteria. In doing so, it strategically searches for and selects diverse, high-performing base-learners to construct ensemble models optimized for skewed data. This package is particularly useful for addressing class imbalance in datasets, ensuring robust and effective model outcomes through advanced ensemble strategies which aim to stabilize the model, reduce its overfitting, and further improve its generalizability.
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between autoEnsemble versions 0.2 dated 2023-05-09 and 0.3 dated 2025-03-20
DESCRIPTION | 20 +++++----------- MD5 | 14 +++++++---- NAMESPACE | 4 +++ R/autoEnsemble.R |only R/ensemble.R | 55 ++++++++++++++++++++++++++++---------------- README.md | 12 +++++---- man/autoEnsemble.Rd |only man/ensemble.Rd | 13 +++++----- man/figures/logo.psd |only man/figures/logo_noname.png |only 10 files changed, 69 insertions(+), 49 deletions(-)
Title: A Spotlight 'React' Widget for 'shiny' Apps
Description: Creates a contextual menu that can be triggered with keyboard shortcuts or programmatically.
This can replace traditional sidebars or navigation bars, thereby enhancing the
user experience with lighter user interfaces.
Author: David Granjon [aut, cre],
Adenekan Wonderful [cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between scoutbaR versions 0.1.0 dated 2025-03-04 and 0.2.0 dated 2025-03-20
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 8 +++++++- R/scoutbar.R | 4 +++- inst/examples/simple/app.R | 7 +++++++ inst/www/scoutbar/scoutbar.js | 2 +- inst/www/scoutbar/scoutbar.js.map | 2 +- man/scoutbar.Rd | 6 ++++-- tests/testthat/_snaps/scoutbar/simple-001.json | 1 + tests/testthat/_snaps/scoutbar/simple-002.json | 1 + tests/testthat/_snaps/scoutbar/simple-002_.png |binary tests/testthat/_snaps/scoutbar/simple-003.json | 1 + tests/testthat/test-scoutbar.R | 2 ++ 13 files changed, 43 insertions(+), 21 deletions(-)
Title: Mental Health Quality of Life Toolkit
Description: Transforms, calculates, and presents results from the Mental Health Quality of Life Questionnaire (MHQoL), a measure of health-related quality of life for individuals with mental health conditions. Provides scoring functions, summary statistics, and visualization tools to facilitate interpretation. For more details see van Krugten et al.(2022) <doi:10.1007/s11136-021-02935-w>.
Author: Stijn Peeters [aut, cre] ,
Frederick Thielen [aut]
Maintainer: Stijn Peeters <s.b.peeters@eshpm.eur.nl>
Diff between MHQoL versions 0.13.0 dated 2025-03-11 and 0.14.0 dated 2025-03-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++-- inst/shiny/app.R | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Interface to the 'OpenGWAS' Database API
Description: Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.
Author: Gibran Hemani [aut, cre, cph] ,
Ben Elsworth [aut] ,
Tom Palmer [aut] ,
Rita Rasteiro [aut]
Maintainer: Gibran Hemani <g.hemani@bristol.ac.uk>
Diff between ieugwasr versions 1.0.1 dated 2024-07-01 and 1.0.3 dated 2025-03-20
DESCRIPTION | 10 +++--- MD5 | 25 ++++++++-------- NAMESPACE | 1 NEWS.md | 9 +++++ R/query.R | 26 ++++++++++++++++ build/vignette.rds |binary man/gwasinfo_files.Rd |only man/ieugwasr-package.Rd | 2 - tests/testthat/test_afl2.r | 13 +++++--- tests/testthat/test_api.r | 4 +- tests/testthat/test_check429.r | 3 + tests/testthat/test_ld.r | 29 +++++++++++------- tests/testthat/test_query.r | 64 +++++++++++++++++++++++++++++++++-------- tests/testthat/test_variants.r | 39 +++++++++++++++++------- 14 files changed, 166 insertions(+), 59 deletions(-)
More information about LJmp3converter at CRAN
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Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.10.8 dated 2025-03-06 and 0.10.10 dated 2025-03-20
DESCRIPTION | 6 - MD5 | 18 ++--- NEWS.md | 10 ++ R/ModeC.R | 114 ++++++++++++++++++-------------- inst/tinytest/test-or3s.R | 4 + inst/tinytest/test-texParse-internals.R | 96 +++++++++++++------------- man/ModeC.Rd | 2 src/C_Mode.c | 50 ++++++++++++++ src/init.c | 2 tests/tinytest.R | 28 ++++--- 10 files changed, 207 insertions(+), 123 deletions(-)
Title: Visualizing the Elements Within Bio-Sequences
Description: Visualizing the types and distribution of elements within
bio-sequences. At the same time, We have developed a geom layer,
geom_rrect(), that can generate rounded rectangles. No external references
are used in the development of this package.
Author: Shiqi Zhao [aut, cre, cph]
Maintainer: Shiqi Zhao <zhaosq89@163.com>
Diff between BioVizSeq versions 1.0.1 dated 2025-01-11 and 1.0.2 dated 2025-03-20
BioVizSeq-1.0.1/BioVizSeq/man/figures |only BioVizSeq-1.0.2/BioVizSeq/DESCRIPTION | 6 - BioVizSeq-1.0.2/BioVizSeq/MD5 | 44 +------ BioVizSeq-1.0.2/BioVizSeq/NEWS.md | 3 BioVizSeq-1.0.2/BioVizSeq/R/combi_plot.R | 66 +++++++---- BioVizSeq-1.0.2/BioVizSeq/R/globalvariables.R | 2 BioVizSeq-1.0.2/BioVizSeq/README.md | 6 - BioVizSeq-1.0.2/BioVizSeq/inst/shinyapp/script/mod_advplot.R | 24 +++- BioVizSeq-1.0.2/BioVizSeq/inst/shinyapp/www/html/README.html | 36 +++--- BioVizSeq-1.0.2/BioVizSeq/man/combi_p.Rd | 5 10 files changed, 106 insertions(+), 86 deletions(-)
Title: Build and Tune Several Models
Description: Frequently one needs a convenient way to build and tune
several models in one go.The goal is to provide a number of machine learning convenience
functions. It provides the ability to build, tune and obtain predictions of
several models in one function. The models are built using functions from
'caret' with easier to read syntax.
Kuhn(2014) <doi:10.48550/arXiv.1405.6974>.
Author: Nelson Gonzabato [aut, cre]
Maintainer: Nelson Gonzabato <gonzabato@hotmail.com>
Diff between manymodelr versions 0.3.7 dated 2021-11-15 and 0.3.9 dated 2025-03-20
DESCRIPTION | 16 MD5 | 170 +-- NAMESPACE | 149 +- NEWS.md | 345 +++--- R/add_model_predictions.R | 158 +-- R/agg_by_group.R | 85 - R/data.R | 16 R/extract_model_info.R | 278 ++--- R/fit_model.R | 116 +- R/get_mode.R | 178 +-- R/get_stats.R | 104 +- R/get_var_corr.R | 154 +-- R/get_var_corr_.R | 132 +- R/globals.R |only R/helpers.R | 114 +- R/multi_model_1.R | 160 +-- R/multi_model_2.R | 66 - R/na_replace.R | 102 +- R/na_replace_grouped.R | 64 - R/plot_corr.R | 459 ++++----- R/report_model.R |only R/rowdiff.R | 114 +- R/select_percentile.R | 90 - R/zzz.R | 20 build/vignette.rds |binary inst/doc/correlations.R | 104 +- inst/doc/correlations.html | 814 ++++++++++------ inst/doc/correlations.rmd | 200 +-- inst/doc/manymodelr_vignette.R | 338 +++--- inst/doc/manymodelr_vignette.html | 1418 ++++++++++++++++------------ inst/doc/manymodelr_vignette.rmd | 708 ++++++------- inst/doc/misc.R | 74 - inst/doc/misc.html | 775 +++++++++------ inst/doc/misc.rmd | 152 +-- inst/doc/modeling.R | 195 +-- inst/doc/modeling.html | 1048 ++++++++++++-------- inst/doc/modeling.rmd | 369 +++---- man/add_model_predictions.Rd | 66 - man/add_model_residuals.Rd | 52 - man/agg_by_group.Rd | 54 - man/drop_non_numeric.Rd | 34 man/extract_model_info.Rd | 80 - man/fit_model.Rd | 76 - man/fit_models.Rd | 86 - man/get_data_Stats.Rd | 104 +- man/get_exponent.Rd | 54 - man/get_mode.Rd | 72 - man/get_this.Rd | 58 - man/get_var_corr.Rd | 86 - man/get_var_corr_.Rd | 84 - man/multi_model_1.Rd | 132 +- man/multi_model_2.Rd | 68 - man/na_replace.Rd | 60 - man/na_replace_grouped.Rd | 52 - man/plot_corr.Rd | 224 ++-- man/report_model.Rd |only man/rowdiff.Rd | 98 - man/select_col.Rd | 64 - man/select_percentile.Rd | 62 - man/yields.Rd | 32 tests/testthat.R | 8 tests/testthat/_snaps |only tests/testthat/test_add_model_predictions.R | 66 - tests/testthat/test_agg_by_group.R | 37 tests/testthat/test_extract_model_info.R | 72 - tests/testthat/test_fit_model.R | 67 - tests/testthat/test_get_exponent.R | 47 tests/testthat/test_get_mode.R | 45 tests/testthat/test_get_stats.R | 44 tests/testthat/test_get_this.R | 50 tests/testthat/test_get_var_corr.R | 56 - tests/testthat/test_get_var_corr_.R | 46 tests/testthat/test_multi_model_1.R | 72 - tests/testthat/test_multi_model_2.R | 50 tests/testthat/test_na_replace.R | 81 - tests/testthat/test_percentile.R | 24 tests/testthat/test_plot_corr.R | 105 +- tests/testthat/test_report_model.R |only tests/testthat/test_rowdiff.R | 52 - tests/testthat/test_select_col.R | 14 vignettes/correlations.rmd | 200 +-- vignettes/manymodelr_vignette.rmd | 708 ++++++------- vignettes/misc.rmd | 152 +-- vignettes/modeling.rmd | 369 +++---- 84 files changed, 7130 insertions(+), 6218 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Julia Piaskowski [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.10.7 dated 2025-01-31 and 1.11.0 dated 2025-03-20
DESCRIPTION | 8 ++-- MD5 | 72 ++++++++++++++++++------------------- NAMESPACE | 2 + NEWS.md | 13 ++++++ R/0nly-internal.R | 45 +++++++++++++++++++++++ R/emm-list.R | 45 ++++++++++++++++++----- R/emmGrid-methods.R | 29 ++++++++++---- R/emmeans.R | 28 ++++++++++++++ R/interfacing.R | 2 - R/summary.R | 2 - R/test.R | 20 ++++++---- inst/doc/AQuickStart.html | 4 +- inst/doc/FAQs.html | 10 ++--- inst/doc/basics.html | 6 +-- inst/doc/comparisons.html | 10 ++--- inst/doc/confidence-intervals.html | 10 ++--- inst/doc/interactions.html | 16 ++++---- inst/doc/messy-data.R | 4 +- inst/doc/messy-data.Rmd | 4 +- inst/doc/messy-data.html | 8 ++-- inst/doc/models.html | 4 +- inst/doc/predictions.html | 4 +- inst/doc/re-engineering-clds.html | 4 +- inst/doc/sophisticated.html | 4 +- inst/doc/transformations.html | 6 +-- inst/doc/utilities.html | 4 +- inst/doc/vignette-topics.html | 4 +- inst/doc/xplanations.html | 4 +- inst/doc/xtending.html | 8 ++-- man/emmGrid-methods.Rd | 16 ++++++-- man/emm_list-object.Rd | 13 ++++-- man/emmeans.Rd | 15 +++++++ man/extending-emmeans.Rd | 2 - man/joint_tests.Rd | 7 +++ man/rbind.emmGrid.Rd | 3 + man/summary.emmGrid.Rd | 4 +- vignettes/messy-data.Rmd | 4 +- 37 files changed, 304 insertions(+), 140 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-29 1.0.0
2022-06-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-02 4.2.1
2024-07-28 4.2
2023-02-14 4.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-13 0.8.11
2021-11-08 0.8.10
2021-08-25 0.8.9
2021-05-02 0.8.8
2020-11-26 0.8.7
2020-08-26 0.8.6
2020-07-06 0.8.5
2020-06-25 0.8.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-18 2.1.1
2022-10-17 2.1.0
2022-04-05 2.0.0
2021-05-25 1.0.0
Title: Treatment Switching
Description: Implements rank-preserving structural failure time model (RPSFTM), iterative parameter estimation (IPE), inverse probability of censoring weights (IPCW), and two-stage estimation (TSE) methods for treatment switching in randomized clinical trials.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between trtswitch versions 0.1.3 dated 2025-02-06 and 0.1.4 dated 2025-03-20
DESCRIPTION | 14 - MD5 | 92 ++++++------ NEWS.md | 9 + R/RcppExports.R | 26 ++- R/ipcw.R | 46 +++--- R/ipe.R | 39 +++-- R/logisregr.R | 6 R/rpsftm.R | 38 +++-- R/trtswitch-package.R | 3 R/tsegest.R | 48 ++++-- R/tsesimp.R | 46 +++--- build/vignette.rds |binary inst/doc/ipcw.html | 14 - inst/doc/ipe.html | 2 inst/doc/rpsftm.html | 2 inst/doc/tsegest.R | 3 inst/doc/tsegest.Rmd | 3 inst/doc/tsegest.html | 41 ++--- man/ipe.Rd | 8 - man/kmest.Rd | 7 man/logisregr.Rd | 6 man/rpsftm.Rd | 8 - man/survsplit.Rd | 2 man/trtswitch-package.Rd | 3 man/tsegest.Rd | 7 man/tsesimp.Rd | 6 src/RcppExports.cpp | 45 +++--- src/ipcw.cpp | 242 +++++++++++++++------------------ src/ipe.cpp | 203 ++++++++++++++++++--------- src/rpsftm.cpp | 158 +++++++++++++++------ src/survival_analysis.cpp | 165 ++++++++++++++-------- src/survival_analysis.h | 4 src/tsegest.cpp | 214 +++++++++++++++-------------- src/tsesimp.cpp | 156 ++++++++++++--------- src/utilities.cpp | 6 src/utilities.h | 2 tests/testthat/test-kmest.R | 24 +-- tests/testthat/test-liferegr.R | 58 +++---- tests/testthat/test-logisregr.R | 58 +++---- tests/testthat/test-lrtest.R | 35 ++-- tests/testthat/test-phregr.R | 60 ++++---- tests/testthat/test-residuals_phregr.R | 210 ++++++++++++++-------------- tests/testthat/test-rmdiff.R | 42 +++-- tests/testthat/test-rmest.R | 28 +-- tests/testthat/test-survfit_phregr.R | 134 +++++++++--------- tests/testthat/test-tsegest.R | 12 - vignettes/tsegest.Rmd | 3 47 files changed, 1355 insertions(+), 983 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.2.0 dated 2025-02-08 and 0.2.1 dated 2025-03-20
DESCRIPTION | 8 LICENSE.note | 532 +++++++++++++++++++-------------------- MD5 | 24 - NEWS.md | 6 R/main.R | 101 +++++-- inst/AUTHORS | 238 ++++++++--------- man/string2path.Rd | 8 src/Makevars.in | 8 src/Makevars.win.in | 8 src/rust/Cargo.lock | 60 ++-- src/rust/Cargo.toml | 11 src/rust/src/into_fill_stroke.rs | 2 src/rust/vendor.tar.xz |binary 13 files changed, 527 insertions(+), 479 deletions(-)