Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.3-4 dated 2025-01-19 and 3.3-5 dated 2025-03-21
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 15 +++++++++++++++ R/envelope.R | 2 +- R/simulatekppm.R | 16 +++++++++++----- R/sysdata.rda |binary inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/macros/defns.Rd | 4 +++- tests/testsK.R | 17 +++++++++++++---- 10 files changed, 59 insertions(+), 25 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb] ,
Wouter van der Bijl [ctb] ,
Giovanni M. Marchetti [ctr]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.5.0 dated 2025-02-12 and 1.6.0 dated 2025-03-21
DESCRIPTION | 23 ++- MD5 | 46 +++---- NAMESPACE | 7 - NEWS.md | 16 ++ R/compute_nll.R | 31 ++--- R/dsem.R | 72 ++++++++++- R/dsemRTMB.R | 9 - R/ggm_imports.R |only R/make_matrices.R | 39 ++++++ R/stepwise_selection.R | 22 ++- R/test_dsep.R | 154 ++++++++++++++++++++++--- R/utility.R | 41 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/dynamic_factor_analysis.html | 32 ++--- inst/doc/spatial_diffusion.html | 1 inst/doc/vignette.html | 27 ++-- man/dsem.Rd | 32 +++++ man/dsemRTMB.Rd | 5 man/make_matrices.Rd |only man/simulate.dsem.Rd | 4 man/stepwise_selection.Rd | 19 ++- man/test_dsep.Rd | 206 ++++++++++++++++++---------------- man/total_effect.Rd | 88 +++++++++----- src/dsem.cpp | 31 ++--- 25 files changed, 638 insertions(+), 267 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 2.4.0 dated 2024-12-02 and 2.5.1 dated 2025-03-21
rSPDE-2.4.0/rSPDE/man/group_predict.Rd |only rSPDE-2.5.1/rSPDE/DESCRIPTION | 8 rSPDE-2.5.1/rSPDE/MD5 | 92 rSPDE-2.5.1/rSPDE/NAMESPACE | 19 rSPDE-2.5.1/rSPDE/NEWS.md | 13 rSPDE-2.5.1/rSPDE/R/fractional.computations.R | 82 rSPDE-2.5.1/rSPDE/R/fractional.operators.R | 45 rSPDE-2.5.1/rSPDE/R/inla_rspde.R | 955 ++- rSPDE-2.5.1/rSPDE/R/inla_rspde_1d.R | 7 rSPDE-2.5.1/rSPDE/R/inla_rspde_anisotropic.R | 4 rSPDE-2.5.1/rSPDE/R/inla_rspde_intrinsic.R | 413 + rSPDE-2.5.1/rSPDE/R/inla_rspde_spacetime.R | 41 rSPDE-2.5.1/rSPDE/R/inlabru_rspde.R | 2016 ++------ rSPDE-2.5.1/rSPDE/R/intrinsic.R | 1265 ++++- rSPDE-2.5.1/rSPDE/R/print.summary.R | 137 rSPDE-2.5.1/rSPDE/R/rspde_lme.R | 1667 ++---- rSPDE-2.5.1/rSPDE/R/spacetime.R | 79 rSPDE-2.5.1/rSPDE/R/stationary1d.R | 2 rSPDE-2.5.1/rSPDE/R/util.R | 2508 +++++++++- rSPDE-2.5.1/rSPDE/inst/CITATION | 4 rSPDE-2.5.1/rSPDE/inst/doc/rSPDE_package.html | 4 rSPDE-2.5.1/rSPDE/man/bru_get_mapper.inla_rspde.Rd | 19 rSPDE-2.5.1/rSPDE/man/bru_get_mapper.inla_rspde_fintrinsic.Rd |only rSPDE-2.5.1/rSPDE/man/create_train_test_indices.Rd | 30 rSPDE-2.5.1/rSPDE/man/cross_validation.Rd | 20 rSPDE-2.5.1/rSPDE/man/intrinsic.matern.operators.Rd | 48 rSPDE-2.5.1/rSPDE/man/intrinsic.operators.Rd |only rSPDE-2.5.1/rSPDE/man/matern.operators.Rd | 4 rSPDE-2.5.1/rSPDE/man/matern2d.operators.Rd | 4 rSPDE-2.5.1/rSPDE/man/precision.intrinsicCBrSPDEobj.Rd |only rSPDE-2.5.1/rSPDE/man/predict.CBrSPDEobj.Rd | 6 rSPDE-2.5.1/rSPDE/man/predict.intrinsicCBrSPDEobj.Rd |only rSPDE-2.5.1/rSPDE/man/predict.rspde_lme.Rd | 2 rSPDE-2.5.1/rSPDE/man/rSPDE.Ast.Rd | 5 rSPDE-2.5.1/rSPDE/man/rspde.anistropic2d.Rd | 4 rSPDE-2.5.1/rSPDE/man/rspde.intrinsic.Rd |only rSPDE-2.5.1/rSPDE/man/rspde.matern.Rd | 4 rSPDE-2.5.1/rSPDE/man/rspde.matern.precision.Rd | 4 rSPDE-2.5.1/rSPDE/man/rspde.matern.precision.opt.Rd | 2 rSPDE-2.5.1/rSPDE/man/rspde.matern1d.Rd | 4 rSPDE-2.5.1/rSPDE/man/rspde.metric_graph.Rd | 4 rSPDE-2.5.1/rSPDE/man/rspde.spacetime.Rd | 3 rSPDE-2.5.1/rSPDE/man/rspde_lme.Rd | 81 rSPDE-2.5.1/rSPDE/man/simulate.intrinsicCBrSPDEobj.Rd | 23 rSPDE-2.5.1/rSPDE/man/spacetime.operators.Rd | 7 rSPDE-2.5.1/rSPDE/man/spde.matern.operators.Rd | 4 rSPDE-2.5.1/rSPDE/man/summary.intrinsicCBrSPDEobj.Rd |only rSPDE-2.5.1/rSPDE/man/update.intrinsicCBrSPDEobj.Rd |only rSPDE-2.5.1/rSPDE/man/update.spacetimeobj.Rd | 2 rSPDE-2.5.1/rSPDE/man/variogram.intrinsic.spde.Rd | 9 rSPDE-2.5.1/rSPDE/tests/testthat/test.CBrSPDE.R | 11 51 files changed, 6268 insertions(+), 3393 deletions(-)
Title: Parallel Factor Analysis Modelling of Longitudinal Microbiome
Data
Description: Creation and selection of PARAllel FACtor Analysis (PARAFAC)
models of longitudinal microbiome data. You can import your own data with
our import functions or use one of the example datasets to create your own
PARAFAC models. Selection of the optimal number of components can be done
using assessModelQuality() and assessModelStability(). The selected model can
then be plotted using plotPARAFACmodel(). The Parallel Factor
Analysis method was originally described by Caroll and Chang (1970)
<doi:10.1007/BF02310791> and Harshman (1970)
<https://www.psychology.uwo.ca/faculty/harshman/wpppfac0.pdf>.
Author: Geert Roelof van der Ploeg [aut, cre]
,
Johan Westerhuis [ctb] ,
Anna Heintz-Buschart [ctb] ,
Age Smilde [ctb] ,
University of Amsterdam [cph, fnd]
Maintainer: Geert Roelof van der Ploeg <g.r.ploeg@uva.nl>
Diff between parafac4microbiome versions 1.0.3 dated 2024-09-24 and 1.1.2 dated 2025-03-21
DESCRIPTION | 10 MD5 | 62 +-- NEWS.md | 18 + R/corcondia.R | 121 ++++--- R/data.R | 10 R/parafac_core_als.R | 2 R/utils.R | 554 ++++++++++++++++----------------- README.md | 9 data/Fujita2023.rda |binary data/Shao2019.rda |binary data/vanderPloeg2024.rda |binary inst/doc/Fujita2023_analysis.R | 5 inst/doc/Fujita2023_analysis.Rmd | 26 - inst/doc/Fujita2023_analysis.html | 85 ++--- inst/doc/PARAFAC_introduction.Rmd | 18 - inst/doc/PARAFAC_introduction.html | 85 ++--- inst/doc/Shao2019_analysis.R | 13 inst/doc/Shao2019_analysis.Rmd | 39 +- inst/doc/Shao2019_analysis.html | 111 +++--- inst/doc/vanderPloeg2024_analysis.R | 14 inst/doc/vanderPloeg2024_analysis.Rmd | 35 -- inst/doc/vanderPloeg2024_analysis.html | 97 ++--- man/figures/README-usage-1.png |binary man/parafac4microbiome-package.Rd | 4 man/vanderPloeg2024.Rd | 9 tests/testthat/test-parafac.R | 400 +++++++++++------------ tests/testthat/test-parafac_core_als.R | 156 ++++----- tests/testthat/test-utils.R | 16 vignettes/Fujita2023_analysis.Rmd | 26 - vignettes/PARAFAC_introduction.Rmd | 18 - vignettes/Shao2019_analysis.Rmd | 39 +- vignettes/vanderPloeg2024_analysis.Rmd | 35 -- 32 files changed, 1030 insertions(+), 987 deletions(-)
More information about parafac4microbiome at CRAN
Permanent link
Title: Graph of Daily and Cumulative Downloads of your Packages
Description: Plot the daily and cumulative number of downloads of your packages.
It is designed to be slightly more convenient than the several similar programs. If you want to run this each morning,
you do not need to keep typing in the names of your packages. Also, this combines the daily and cumulative counts in one
run, you do not need to run separate programs to get both types of information.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Diff between myCRAN versions 1.1 dated 2024-02-15 and 1.2 dated 2025-03-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/myCRAN.R | 17 ++++++++++++++++- build/vignette.rds |binary inst/doc/myCRAN.html | 10 +++++----- 5 files changed, 29 insertions(+), 14 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.3.20 dated 2025-03-09 and 9.3.21 dated 2025-03-21
rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/bench.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/bind.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/cbg.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/chat80.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/engines.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/examples |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/index.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/shell.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/test.html |only rswipl-9.3.20/rswipl/src/swipl-devel/src/wasm/test.pl |only rswipl-9.3.21/rswipl/DESCRIPTION | 8 rswipl-9.3.21/rswipl/MD5 | 198 - rswipl-9.3.21/rswipl/NEWS.md | 6 rswipl-9.3.21/rswipl/configure |only rswipl-9.3.21/rswipl/configure.win |only rswipl-9.3.21/rswipl/inst/patch |only rswipl-9.3.21/rswipl/src/install.libs.R | 2 rswipl-9.3.21/rswipl/src/swipl-devel/CMAKE.md | 70 rswipl-9.3.21/rswipl/src/swipl-devel/CMakeLists.txt | 8 rswipl-9.3.21/rswipl/src/swipl-devel/VERSION | 2 rswipl-9.3.21/rswipl/src/swipl-devel/app/app.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/app/pack.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/app/qlf.pl | 66 rswipl-9.3.21/rswipl/src/swipl-devel/app/splfr.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/boot/autoload.pl | 72 rswipl-9.3.21/rswipl/src/swipl-devel/boot/build_home.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/boot/init.pl | 117 - rswipl-9.3.21/rswipl/src/swipl-devel/boot/messages.pl | 67 rswipl-9.3.21/rswipl/src/swipl-devel/boot/qlf.pl | 10 rswipl-9.3.21/rswipl/src/swipl-devel/boot/rc.pl | 2 rswipl-9.3.21/rswipl/src/swipl-devel/boot/toplevel.pl | 149 - rswipl-9.3.21/rswipl/src/swipl-devel/cmake/BuildType.cmake | 10 rswipl-9.3.21/rswipl/src/swipl-devel/cmake/EmscriptenTargets.cmake | 53 rswipl-9.3.21/rswipl/src/swipl-devel/cmake/InstallSource.cmake | 130 + rswipl-9.3.21/rswipl/src/swipl-devel/cmake/PackageSelection.cmake | 4 rswipl-9.3.21/rswipl/src/swipl-devel/cmake/QLF.cmake | 7 rswipl-9.3.21/rswipl/src/swipl-devel/library/ansi_term.pl | 29 rswipl-9.3.21/rswipl/src/swipl-devel/library/assoc.pl | 2 rswipl-9.3.21/rswipl/src/swipl-devel/library/dialect/sicstus/block.pl | 2 rswipl-9.3.21/rswipl/src/swipl-devel/library/dialect/swi/syspred_options.pl | 10 rswipl-9.3.21/rswipl/src/swipl-devel/library/prolog_debug.pl | 18 rswipl-9.3.21/rswipl/src/swipl-devel/library/prolog_qlfmake.pl |only rswipl-9.3.21/rswipl/src/swipl-devel/library/prolog_source.pl | 14 rswipl-9.3.21/rswipl/src/swipl-devel/library/prolog_stack.pl | 30 rswipl-9.3.21/rswipl/src/swipl-devel/library/prolog_xref.pl | 124 - rswipl-9.3.21/rswipl/src/swipl-devel/library/quasi_quotations.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/library/readutil.pl | 4 rswipl-9.3.21/rswipl/src/swipl-devel/library/solution_sequences.pl | 11 rswipl-9.3.21/rswipl/src/swipl-devel/library/wasm.pl | 69 rswipl-9.3.21/rswipl/src/swipl-devel/packages/chr/chr_debug.pl | 3 rswipl-9.3.21/rswipl/src/swipl-devel/packages/cmake/PrologPackage.cmake | 9 rswipl-9.3.21/rswipl/src/swipl-devel/packages/cpp/test_cpp.cpp | 6 rswipl-9.3.21/rswipl/src/swipl-devel/packages/cql/cql_database.pl | 7 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/CMakeLists.txt | 6 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/examples/demo_body.pl | 32 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/http_openid.pl | 14 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/http_unix_daemon.pl | 1 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/jquery.pl.in | 33 rswipl-9.3.21/rswipl/src/swipl-devel/packages/http/term_html.pl | 12 rswipl-9.3.21/rswipl/src/swipl-devel/packages/ssl/saml.pl | 18 rswipl-9.3.21/rswipl/src/swipl-devel/packages/ssl/ssl4pl.c | 4 rswipl-9.3.21/rswipl/src/swipl-devel/scripts/clean-build |only rswipl-9.3.21/rswipl/src/swipl-devel/scripts/configure | 23 rswipl-9.3.21/rswipl/src/swipl-devel/src/ATOMS | 6 rswipl-9.3.21/rswipl/src/swipl-devel/src/CMakeLists.txt | 48 rswipl-9.3.21/rswipl/src/swipl-devel/src/SWI-Prolog.h | 19 rswipl-9.3.21/rswipl/src/swipl-devel/src/os/pl-file.c | 6 rswipl-9.3.21/rswipl/src/swipl-devel/src/os/pl-locale.c | 2 rswipl-9.3.21/rswipl/src/swipl-devel/src/os/pl-prologflag.c | 1 rswipl-9.3.21/rswipl/src/swipl-devel/src/os/pl-text.c | 6 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-alloc.c | 5 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-attvar.c | 18 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-attvar.h | 6 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-codelist.h | 2 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-comp.c | 46 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-comp.h | 2 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-debug.c | 8 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-debug.h | 10 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-error.c | 12 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-error.h | 3 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-event.h | 4 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-fli.c | 22 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-global.h | 18 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-incl.h | 53 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-init.c | 4 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-pro.c | 5 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-proc.c | 6 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-qlf.c | 348 ++- rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-srcfile.c | 3 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-supervisor.c | 10 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-trace.c | 774 ++++--- rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-trace.h | 19 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-vmi.c | 1032 +++++----- rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-wam.c | 331 ++- rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-wrap.c | 31 rswipl-9.3.21/rswipl/src/swipl-devel/src/pl-wrap.h | 4 rswipl-9.3.21/rswipl/src/swipl-devel/src/wasm/demos |only rswipl-9.3.21/rswipl/src/swipl-devel/src/wasm/exports.json | 4 rswipl-9.3.21/rswipl/src/swipl-devel/src/wasm/pl-wasm.c | 39 rswipl-9.3.21/rswipl/src/swipl-devel/src/wasm/prolog.js | 515 ++++ rswipl-9.3.21/rswipl/src/swipl-devel/src/wasm/server.pl | 57 rswipl-9.3.21/rswipl/src/swipl-devel/tests/core/test_det_decl.pl | 3 102 files changed, 3321 insertions(+), 1643 deletions(-)
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem. Attention is paid to ensure consistency, traceability, and Nonmem compatibility of Data. Rigorously checks final Nonmem datasets. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre],
Brian Reilly [ctb],
Eric Anderson [ctb],
Matthew Fidler [ctb]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.1.9 dated 2025-01-24 and 0.2.0 dated 2025-03-21
NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/check.time/NMdata_backup |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/min036_res.txt |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr008.ext |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr008.lst |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr008.mod |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr008.phi |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr008_res.txt |only NMdata-0.1.9/NMdata/tests/testthat/testData/simulations/NMsimData_xgxr014_testsim1.csv |only NMdata-0.1.9/NMdata/tests/testthat/testData/simulations/xgxr014_subprobs |only NMdata-0.1.9/NMdata/tests/testthat/testData/simulations/xgxr014_testsim1.lst |only NMdata-0.1.9/NMdata/tests/testthat/testData/simulations/xgxr014_testsim1.mod |only NMdata-0.1.9/NMdata/tests/testthat/testData/simulations/xgxr014_testsim1.tab |only NMdata-0.1.9/NMdata/tests/testthat/testOutput/NMdata_backup |only NMdata-0.1.9/NMdata/tests/testthat/testOutput/simulations/NMdata_backup |only NMdata-0.2.0/NMdata/DESCRIPTION | 6 NMdata-0.2.0/NMdata/MD5 | 165 +++++--- NMdata-0.2.0/NMdata/NAMESPACE | 7 NMdata-0.2.0/NMdata/NEWS.md | 130 ++++-- NMdata-0.2.0/NMdata/R/NMcheckData.R | 19 - NMdata-0.2.0/NMdata/R/NMdataConf.R | 3 NMdata-0.2.0/NMdata/R/NMextractText.R | 2 NMdata-0.2.0/NMdata/R/NMgenText.R | 3 NMdata-0.2.0/NMdata/R/NMorderColumns.R | 2 NMdata-0.2.0/NMdata/R/NMreadFilters.R |only NMdata-0.2.0/NMdata/R/NMreadInits.R | 11 NMdata-0.2.0/NMdata/R/NMreadParsText.R | 11 NMdata-0.2.0/NMdata/R/NMreadSection.R | 12 NMdata-0.2.0/NMdata/R/NMreadSizes.R |only NMdata-0.2.0/NMdata/R/NMreadTab.R | 60 ++- NMdata-0.2.0/NMdata/R/NMrelateOne.R | 20 - NMdata-0.2.0/NMdata/R/NMscanData.R | 4 NMdata-0.2.0/NMdata/R/NMscanInput.R | 32 - NMdata-0.2.0/NMdata/R/NMtransInp.R | 16 NMdata-0.2.0/NMdata/R/NMwriteData.R | 16 NMdata-0.2.0/NMdata/R/NMwriteFilters.R |only NMdata-0.2.0/NMdata/R/NMwriteInits.R |only NMdata-0.2.0/NMdata/R/NMwriteSectionOne.R | 6 NMdata-0.2.0/NMdata/R/NMwriteSizes.R |only NMdata-0.2.0/NMdata/R/addCor.R | 1 NMdata-0.2.0/NMdata/R/addTAPD.R | 11 NMdata-0.2.0/NMdata/R/compareCols.R | 27 + NMdata-0.2.0/NMdata/R/mergeCheck.R | 26 - NMdata-0.2.0/NMdata/R/message_dt.R |only NMdata-0.2.0/NMdata/R/reduceTables.R | 2 NMdata-0.2.0/NMdata/R/writeTextFile.R |only NMdata-0.2.0/NMdata/README.md | 188 ++++------ NMdata-0.2.0/NMdata/inst/examples/nonmem/xgxr133.mod | 2 NMdata-0.2.0/NMdata/man/NMextractText.Rd | 2 NMdata-0.2.0/NMdata/man/NMreadFilters.Rd |only NMdata-0.2.0/NMdata/man/NMreadSection.Rd | 10 NMdata-0.2.0/NMdata/man/NMreadSizes.Rd |only NMdata-0.2.0/NMdata/man/NMscanInput.Rd | 26 - NMdata-0.2.0/NMdata/man/NMwriteData.Rd | 11 NMdata-0.2.0/NMdata/man/NMwriteFilters.Rd |only NMdata-0.2.0/NMdata/man/NMwriteInits.Rd |only NMdata-0.2.0/NMdata/man/NMwriteSizes.Rd |only NMdata-0.2.0/NMdata/man/addOmegaCorr.Rd | 3 NMdata-0.2.0/NMdata/man/addTAPD.Rd | 9 NMdata-0.2.0/NMdata/man/compareCols.Rd | 4 NMdata-0.2.0/NMdata/man/figures/README-NMscanData-example1-plot-1.png |binary NMdata-0.2.0/NMdata/man/figures/README-NMscanMultiple-plot-1.png |binary NMdata-0.2.0/NMdata/man/mergeCheck.Rd | 26 - NMdata-0.2.0/NMdata/man/reduceTables.Rd | 2 NMdata-0.2.0/NMdata/man/triagSize.Rd | 13 NMdata-0.2.0/NMdata/man/writeTextFile.Rd |only NMdata-0.2.0/NMdata/tests/testthat/testData/nonmem/xgxr051.mod |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr014_testsim1 |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr014_testsim1_ResultsData.fst |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr032_simpletab |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr032_simpletab_ResultsData.fst |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr032_testsim1 |only NMdata-0.2.0/NMdata/tests/testthat/testData/simulations/xgxr032_testsim1_ResultsData.fst |only NMdata-0.2.0/NMdata/tests/testthat/testOutput/NMrelate_lowercase.mod |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMreadSizes_01.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMreadSizes_02.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMreadTab_01.rds |binary NMdata-0.2.0/NMdata/tests/testthat/testReference/NMreadTab_02.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMscanData_31.rds |binary NMdata-0.2.0/NMdata/tests/testthat/testReference/NMscanMultiple_01.rds |binary NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteFilters_01.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_01.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_02.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_03.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_04.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_05.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteInits_06.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteSizes_01.rds |only NMdata-0.2.0/NMdata/tests/testthat/testReference/NMwriteSizes_02.rds |only NMdata-0.2.0/NMdata/tests/testthat/test_NMcheckData.R | 4 NMdata-0.2.0/NMdata/tests/testthat/test_NMreadSizes.R |only NMdata-0.2.0/NMdata/tests/testthat/test_NMreadTab.R | 44 ++ NMdata-0.2.0/NMdata/tests/testthat/test_NMrelate.R | 24 + NMdata-0.2.0/NMdata/tests/testthat/test_NMscanData.R | 121 +++--- NMdata-0.2.0/NMdata/tests/testthat/test_NMscanInput.R | 18 NMdata-0.2.0/NMdata/tests/testthat/test_NMscanMultiple.R | 3 NMdata-0.2.0/NMdata/tests/testthat/test_NMwriteFilters.R |only NMdata-0.2.0/NMdata/tests/testthat/test_NMwriteInits.R |only NMdata-0.2.0/NMdata/tests/testthat/test_NMwriteSizes.R |only NMdata-0.2.0/NMdata/tests/testthat/test_addTAPD.R | 2 99 files changed, 660 insertions(+), 444 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.29 dated 2024-12-13 and 4.33 dated 2025-03-21
fuzzySim-4.29/fuzzySim/NEWS |only fuzzySim-4.33/fuzzySim/DESCRIPTION | 10 - fuzzySim-4.33/fuzzySim/MD5 | 32 +++--- fuzzySim-4.33/fuzzySim/NAMESPACE | 19 +-- fuzzySim-4.33/fuzzySim/NEWS.md |only fuzzySim-4.33/fuzzySim/R/FDR.R | 2 fuzzySim-4.33/fuzzySim/R/Fav.R | 53 ++++++---- fuzzySim-4.33/fuzzySim/R/biasLayer.R |only fuzzySim-4.33/fuzzySim/R/cleanCoords.R | 50 ++++----- fuzzySim-4.33/fuzzySim/R/distPres.R | 128 +++++++++++++------------ fuzzySim-4.33/fuzzySim/R/partialResp.R |only fuzzySim-4.33/fuzzySim/R/selectAbsences.R | 120 ++++++++++++----------- fuzzySim-4.33/fuzzySim/man/Fav.Rd | 24 ++-- fuzzySim-4.33/fuzzySim/man/biasLayer.Rd |only fuzzySim-4.33/fuzzySim/man/cleanCoords.Rd | 10 - fuzzySim-4.33/fuzzySim/man/distPres.Rd | 16 +-- fuzzySim-4.33/fuzzySim/man/fuzzyOverlay.Rd | 4 fuzzySim-4.33/fuzzySim/man/fuzzySim-package.Rd | 4 fuzzySim-4.33/fuzzySim/man/partialResp.Rd |only fuzzySim-4.33/fuzzySim/man/selectAbsences.Rd | 13 +- 20 files changed, 262 insertions(+), 223 deletions(-)
Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations
using a new family of orthogonal date-time classes (durations, time
points, zoned-times, and calendars) that partition responsibilities so
that the complexities of time zones are only considered when they are
really needed. Capabilities include: date-time parsing, formatting,
arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between clock versions 0.7.2 dated 2025-01-21 and 0.7.3 dated 2025-03-21
DESCRIPTION | 16 MD5 | 16 NEWS.md | 18 R/cpp11.R | 507 +++---------------------- src/ordinal.h | 8 src/parse.h | 39 + src/week.h | 2 tests/testthat/test-gregorian-year-month-day.R | 32 + tests/testthat/test-time-point.R | 16 9 files changed, 167 insertions(+), 487 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-23 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-12 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-25 0.9-2.1
2023-05-15 0.9-2
2021-09-24 0.9-1
2017-06-27 0.9-0
2015-12-16 0.8-6
2015-07-29 0.8-5
2015-05-31 0.8-4
2013-08-19 0.8-3
2013-08-18 0.8-2
2013-05-26 0.8-1
2012-07-24 0.8-0
2012-01-06 0.7-5
2012-01-04 0.7-4
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the fu [...truncated...]
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 2.4.12 dated 2024-12-23 and 2.5.3 dated 2025-03-21
psych-2.4.12/psych/inst/scoring.pdf |only psych-2.5.3/psych/DESCRIPTION | 8 +- psych-2.5.3/psych/MD5 | 81 ++++++++++++++---------------- psych-2.5.3/psych/R/ICLUST.sort.R | 2 psych-2.5.3/psych/R/correct.cor.R | 7 +- psych-2.5.3/psych/R/cortest.R | 32 +++++++---- psych-2.5.3/psych/R/cortest.mat.R | 12 +++- psych-2.5.3/psych/R/cortest.normal.R | 17 ++++-- psych-2.5.3/psych/R/describe.R | 20 ++++++- psych-2.5.3/psych/R/esem.R | 6 +- psych-2.5.3/psych/R/fa.extension.R | 2 psych-2.5.3/psych/R/factor.stats.R | 2 psych-2.5.3/psych/R/lmCor.R | 6 +- psych-2.5.3/psych/R/misc.R | 5 + psych-2.5.3/psych/R/mixed.cor.R | 2 psych-2.5.3/psych/R/pairs.panels.R | 12 ++-- psych-2.5.3/psych/R/polychoric.R | 19 +++++++ psych-2.5.3/psych/R/print.psych.R | 2 psych-2.5.3/psych/R/print.psych.omega.R | 4 - psych-2.5.3/psych/R/scatter.hist.R | 39 ++++++++++---- psych-2.5.3/psych/R/summary.psych.R | 2 psych-2.5.3/psych/R/tetrachor.R | 20 +++++-- psych-2.5.3/psych/R/unidim.r | 2 psych-2.5.3/psych/build/partial.rdb |binary psych-2.5.3/psych/build/vignette.rds |binary psych-2.5.3/psych/inst/CITATION | 4 - psych-2.5.3/psych/inst/NEWS.Rd | 37 ++++++++++++- psych-2.5.3/psych/inst/doc/scoring.Rnw | 18 +++--- psych-2.5.3/psych/inst/doc/scoring.pdf |binary psych-2.5.3/psych/man/00.psych-package.Rd | 7 +- psych-2.5.3/psych/man/ICLUST.sort.Rd | 2 psych-2.5.3/psych/man/KMO.Rd | 20 ++++--- psych-2.5.3/psych/man/alpha.Rd | 2 psych-2.5.3/psych/man/cortest.mat.Rd | 23 +++++++- psych-2.5.3/psych/man/esem.Rd | 3 - psych-2.5.3/psych/man/fa.sort.Rd | 4 - psych-2.5.3/psych/man/fparse.Rd | 4 - psych-2.5.3/psych/man/pairs.panels.Rd | 14 ++++- psych-2.5.3/psych/man/scatter.hist.Rd | 22 ++++++-- psych-2.5.3/psych/man/tetrachor.Rd | 2 psych-2.5.3/psych/man/unidim.Rd | 2 psych-2.5.3/psych/vignettes/scoring.Rnw | 18 +++--- 42 files changed, 327 insertions(+), 157 deletions(-)
Title: Fast and Flexible Implementations of Exploratory Factor Analysis
Tools
Description: Provides functions to perform exploratory factor analysis (EFA) procedures and compare their solutions. The goal is to provide state-of-the-art factor retention methods and a high degree of flexibility in the EFA procedures. This way, for example, implementations from R 'psych' and 'SPSS' can be compared. Moreover, functions for Schmid-Leiman transformation and the computation of omegas are provided. To speed up the analyses, some of the iterative procedures, like principal axis factoring (PAF), are implemented in C++.
Author: Markus Steiner [aut, cre],
Silvia Grieder [aut],
William Revelle [ctb],
Max Auerswald [ctb],
Morten Moshagen [ctb],
John Ruscio [ctb],
Brendan Roche [ctb],
Urbano Lorenzo-Seva [ctb],
David Navarro-Gonzalez [ctb]
Maintainer: Markus Steiner <markus.d.steiner@gmail.com>
Diff between EFAtools versions 0.4.5 dated 2024-12-22 and 0.4.6 dated 2025-03-21
DESCRIPTION | 6 - MD5 | 14 ++-- NEWS.md | 12 +++ inst/doc/EFAtools.Rmd | 2 inst/doc/EFAtools.html | 126 ++++++++++++++++++------------------- inst/doc/Replicate_SPSS_psych.html | 18 ++--- tests/testthat/test-helper.R | 32 ++++++++- vignettes/EFAtools.Rmd | 2 8 files changed, 125 insertions(+), 87 deletions(-)
Title: Water and Measurements Quality
Description: The functions proposed in this package allows to evaluate the process of measurement of the chemical components of water numerically or graphically. TSSS() and ICHS functions are useful to control the quality of measurements of chemical components of a sample of water. If one or more measurements include an error, the generated graph will indicate it with a position of the point that represents the sample outside the confidence interval. The function CI allows to evaluate the possibility of contamination of a water sample after being obtained.
Author: Maela Lupo [aut, cre],
Andrea Porpatto [aut],
Rosa Marzullo [aut],
Alfredo Rigalli [aut]
Maintainer: Maela Lupo <maela.lupo@gmail.com>
Diff between AQuality versions 1.1 dated 2024-07-25 and 1.2 dated 2025-03-21
DESCRIPTION | 12 +++++++----- MD5 | 12 ++++++++---- NAMESPACE | 4 ++-- R/CI.R |only build/partial.rdb |binary data/dataCI.rda |only man/AQuality-package.Rd | 2 +- man/CI.Rd |only man/dataCI.Rd |only 9 files changed, 18 insertions(+), 12 deletions(-)
Title: A Portal for Global Governance Data
Description: This is the core package for the many packages universe.
It includes functions to help researchers work with and contribute to
event datasets on global governance.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Bernhard Bieri [ctb] ,
Esther Peev [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manydata versions 0.9.3 dated 2024-05-06 and 1.0.1 dated 2025-03-21
manydata-0.9.3/manydata/R/call.R |only manydata-0.9.3/manydata/R/emperors.R |only manydata-0.9.3/manydata/man/coalesce_rows.Rd |only manydata-0.9.3/manydata/man/compare_ranges.Rd |only manydata-0.9.3/manydata/man/favour.Rd |only manydata-0.9.3/manydata/tests/testthat/test_UNRV.R |only manydata-0.9.3/manydata/tests/testthat/test_britannica.R |only manydata-0.9.3/manydata/tests/testthat/test_call.R |only manydata-0.9.3/manydata/tests/testthat/test_wikipedia.R |only manydata-1.0.1/manydata/DESCRIPTION | 25 manydata-1.0.1/manydata/MD5 | 81 - manydata-1.0.1/manydata/NAMESPACE | 29 manydata-1.0.1/manydata/NEWS.md | 63 + manydata-1.0.1/manydata/R/call_packages.R |only manydata-1.0.1/manydata/R/call_sources.R |only manydata-1.0.1/manydata/R/call_treaties.R |only manydata-1.0.1/manydata/R/compare.R | 184 +-- manydata-1.0.1/manydata/R/consolidate.R | 486 +++------- manydata-1.0.1/manydata/R/data_emperors.R |only manydata-1.0.1/manydata/R/describe_data.R |only manydata-1.0.1/manydata/R/resolve.R |only manydata-1.0.1/manydata/R/wrangling_data.R | 40 manydata-1.0.1/manydata/R/zzz.R | 21 manydata-1.0.1/manydata/README.md | 396 ++------ manydata-1.0.1/manydata/data/emperors.rda |binary manydata-1.0.1/manydata/man/call_packages.Rd | 8 manydata-1.0.1/manydata/man/call_releases.Rd | 3 manydata-1.0.1/manydata/man/call_sources.Rd | 63 - manydata-1.0.1/manydata/man/call_treaties.Rd | 5 manydata-1.0.1/manydata/man/compare_categories.Rd | 3 manydata-1.0.1/manydata/man/compare_dimensions.Rd | 3 manydata-1.0.1/manydata/man/compare_missing.Rd | 3 manydata-1.0.1/manydata/man/compare_overlap.Rd | 3 manydata-1.0.1/manydata/man/consolidate.Rd | 83 - manydata-1.0.1/manydata/man/describe.Rd |only manydata-1.0.1/manydata/man/emperors.Rd | 109 -- manydata-1.0.1/manydata/man/figures/README-categories-1.png |binary manydata-1.0.1/manydata/man/figures/README-missing-1.png |binary manydata-1.0.1/manydata/man/figures/README-overlap-1.png |binary manydata-1.0.1/manydata/man/pluck.Rd |only manydata-1.0.1/manydata/man/reexports.Rd | 21 manydata-1.0.1/manydata/man/resolving.Rd |only manydata-1.0.1/manydata/man/transmutate.Rd | 4 manydata-1.0.1/manydata/tests/testthat.R | 1 manydata-1.0.1/manydata/tests/testthat/test-call_sources.R |only manydata-1.0.1/manydata/tests/testthat/test-call_treaties.R |only manydata-1.0.1/manydata/tests/testthat/test-report.R |only manydata-1.0.1/manydata/tests/testthat/test_compare.R | 23 manydata-1.0.1/manydata/tests/testthat/test_compare_ranges.R |only manydata-1.0.1/manydata/tests/testthat/test_consolidate.R | 149 +-- manydata-1.0.1/manydata/tests/testthat/test_data_UNRV.R |only manydata-1.0.1/manydata/tests/testthat/test_data_britannica.R |only manydata-1.0.1/manydata/tests/testthat/test_data_wikipedia.R |only manydata-1.0.1/manydata/tests/testthat/test_wrangling.R | 18 54 files changed, 746 insertions(+), 1078 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the
only such package with read and write support for TIFF files with
floating point (real-numbered) pixels, and the only package that can
correctly import TIFF files that were saved from 'ImageJ' and write
TIFF files than can be correctly read by 'ImageJ'
<https://imagej.net/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] ,
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] ,
Jeroen Ooms [rev, ctb] ,
Jon Clayden [rev]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 3.1.0 dated 2025-03-10 and 3.1.1 dated 2025-03-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ inst/doc/reading-and-writing-images.html | 28 ++++++++++++++-------------- inst/doc/text-images.html | 4 ++-- inst/doc/the-imagej-problem.html | 8 ++++---- inst/doc/tiff-tags.html | 4 ++-- 7 files changed, 37 insertions(+), 31 deletions(-)
Title: A simple interface to the PROJ.4 cartographic projections
library
Description: A simple interface to lat/long projection and datum
transformation of the PROJ.4 cartographic projections library. It
allows transformation of geographic coordinates from one projection
and/or datum to another.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between proj4 versions 1.0-14 dated 2024-01-14 and 1.0-15 dated 2025-03-21
DESCRIPTION | 10 MD5 | 10 NEWS | 3 configure | 545 ++++++++++++++++++++++++++++-------------------------- configure.ac | 4 src/Makevars.ucrt | 8 6 files changed, 312 insertions(+), 268 deletions(-)
Title: Read and write JPEG images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between jpeg versions 0.1-10 dated 2022-11-29 and 0.1-11 dated 2025-03-21
DESCRIPTION | 10 ++++++---- MD5 | 10 +++++----- NEWS | 10 ++++++++++ man/readJPEG.Rd | 5 +++++ src/Makevars-ls.win | 6 +++++- src/rjcommon.h | 12 +++++++++++- 6 files changed, 42 insertions(+), 11 deletions(-)
Title: Functions for Set-Theoretic Multi-Method Research and Advanced
QCA
Description: Functions for performing set-theoretic multi-method research, QCA for clustered data, theory evaluation, Enhanced Standard Analysis, indirect calibration, radar visualisations. Additionally it includes data to replicate the examples in the books by Oana, I.E, C. Q. Schneider, and E. Thomann. Qualitative Comparative Analysis (QCA) using R: A Beginner's Guide. Cambridge University Press and C. Q. Schneider and C. Wagemann "Set Theoretic Methods for the Social Sciences", Cambridge University Press.
Author: Ioana-Elena Oana [aut, cre],
Juraj Medzihorsky [aut],
Mario Quaranta [aut],
Carsten Q. Schneider [aut]
Maintainer: Ioana-Elena Oana <ioana.oana@eui.eu>
Diff between SetMethods versions 4.0 dated 2023-03-31 and 4.1 dated 2025-03-21
DESCRIPTION | 29 +++++++++++++++++++++-------- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/helper_rob.R | 20 ++++++++++---------- R/helper_theory_eval.R | 31 +++++++++++++++++++------------ R/pimdata.R | 2 +- man/SetMethods-package.Rd | 4 ++-- man/rob.calibrange.Rd | 3 +++ man/rob.inclrange.Rd | 3 +++ 9 files changed, 71 insertions(+), 41 deletions(-)
Title: Dynamic Panel Multiple Threshold Model with Fixed Effects
Description: Compute the fixed effects dynamic panel threshold model suggested by Ramírez-Rondán (2020) <doi:10.1080/07474938.2019.1624401>, and dynamic panel linear model suggested by Hsiao et al. (2002) <doi:10.1016/S0304-4076(01)00143-9>, where maximum likelihood type estimators are used. Multiple thresholds estimation based on Markov Chain Monte Carlo (MCMC) is allowed, and model selection of linear model, threshold model and multiple threshold model is also allowed.
Author: Bai Hujie [aut, cre, cph]
Maintainer: Bai Hujie <hujiebai@163.com>
Diff between DPTM versions 1.6.0 dated 2024-11-28 and 3.0.2 dated 2025-03-21
DPTM-1.6.0/DPTM/R/DPM.R |only DPTM-1.6.0/DPTM/R/tests.R |only DPTM-1.6.0/DPTM/R/thresholdS.R |only DPTM-1.6.0/DPTM/data/data.rda |only DPTM-1.6.0/DPTM/man/data.Rd |only DPTM-3.0.2/DPTM/DESCRIPTION | 13 - DPTM-3.0.2/DPTM/MD5 | 32 ++-- DPTM-3.0.2/DPTM/NAMESPACE | 3 DPTM-3.0.2/DPTM/NEWS.md | 31 ---- DPTM-3.0.2/DPTM/R/DPTM_r6_class.R |only DPTM-3.0.2/DPTM/R/DPTS.R |only DPTM-3.0.2/DPTM/R/Linear.R |only DPTM-3.0.2/DPTM/R/Tests.R |only DPTM-3.0.2/DPTM/R/configuration.R |only DPTM-3.0.2/DPTM/R/data.R | 31 ++-- DPTM-3.0.2/DPTM/R/data_Growth_Inflation.R |only DPTM-3.0.2/DPTM/README.md | 41 ++--- DPTM-3.0.2/DPTM/data/Growth_Inflation.rda |only DPTM-3.0.2/DPTM/data/d1.rda |only DPTM-3.0.2/DPTM/man/DPML.Rd | 131 +++++++----------- DPTM-3.0.2/DPTM/man/DPTM.Rd |only DPTM-3.0.2/DPTM/man/DPTS.Rd | 215 +++++++++++++++--------------- DPTM-3.0.2/DPTM/man/Growth_Inflation.Rd |only DPTM-3.0.2/DPTM/man/Threshold_Test.Rd | 180 ++++++++++--------------- DPTM-3.0.2/DPTM/man/d1.Rd |only 25 files changed, 314 insertions(+), 363 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.3-4 dated 2025-01-08 and 3.4-2 dated 2025-03-21
DESCRIPTION | 23 + MD5 | 52 ++- NAMESPACE | 9 NEWS | 64 ++++ R/bw.bdh.R |only R/bw.pcf.R | 438 ++++++++++++++++++++++++++------ R/bw.stoyan.R |only R/envelope.R | 69 +++-- R/fv.R | 9 R/pcf.R | 527 +++++++++++++++++++++++++++++++++++---- R/pcfinhom.R | 480 +++++++++++++++++++++++++++++------ R/plot.fv.R | 18 - R/ptwise.R |only R/relrisk.R | 13 inst/doc/packagesizes.txt | 3 inst/info/packagesizes.txt | 3 man/ISE.envelope.Rd |only man/MISE.envelope.Rd |only man/bw.bdh.Rd |only man/bw.pcf.Rd | 102 ++++--- man/bw.pcfinhom.Rd |only man/bw.stoyan.Rd | 32 +- man/density.ppp.Rd | 4 man/macros/defns.Rd | 4 man/pcf.ppp.Rd | 251 ++++++++++++++---- man/pcfinhom.Rd | 200 +++++++++----- man/plot.fv.Rd | 14 - man/ptwise.envelope.Rd |only man/spatstat.explore-internal.Rd | 8 man/spatstat.explore-package.Rd | 34 ++ tests/testsK.R | 14 - 31 files changed, 1887 insertions(+), 484 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: The Generalized Pairs Plot
Description: Offers a generalization of the scatterplot matrix based on the recognition that most datasets include both categorical and quantitative information. Traditional grids of scatterplots often obscure important features of the data when one or more variables are categorical but coded as numerical. The generalized pairs plot offers a range of displays of paired combinations of categorical and quantitative variables. Emerson et al. (2013) <DOI:10.1080/10618600.2012.694762>.
Author: John W. Emerson [aut, cre],
Walton A. Green [aut],
Liya Xiang [ctb]
Maintainer: John W. Emerson <john.emerson@yale.edu>
Diff between gpairs versions 1.3.3 dated 2020-04-11 and 1.4.0 dated 2025-03-21
gpairs-1.3.3/gpairs/README.md |only gpairs-1.4.0/gpairs/DESCRIPTION | 28 gpairs-1.4.0/gpairs/MD5 | 9 gpairs-1.4.0/gpairs/NAMESPACE | 1 gpairs-1.4.0/gpairs/R/gpairs.R | 1134 +++++++++++++++++++------------------- gpairs-1.4.0/gpairs/man/gpairs.Rd | 4 6 files changed, 595 insertions(+), 581 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray [aut] ,
David Bauman [ctb],
Guillaume Blanchet [ctb],
Daniel Borcard [ctb],
Sylvie Clappe [ctb],
Guillaume Guenard [ctb] ,
Thibaut Jombart [ctb],
Guillaume Larocque [ctb],
Pierre Legendre [ctb] ,
Naima Madi [ctb],
Helene H Wagner [ctb], [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adespatial versions 0.3-24 dated 2024-09-06 and 0.3-26 dated 2025-03-21
DESCRIPTION | 14 - MD5 | 29 +- NAMESPACE | 2 R/Tiahura.R | 3 R/dist.ldc.R | 537 +++++++++++++++++++++++++++---------------------- R/geoDist.R |only R/geoXY.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.R | 2 inst/doc/tutorial.html | 268 ++++++++++++------------ inst/extdata |only man/Tiahura.Rd | 3 man/dist.ldc.Rd | 125 ++++++++--- man/geoDist.Rd |only man/geoXY.Rd |only src/geoddist.f |only src/geodistv.f |only src/init.c | 11 - 19 files changed, 571 insertions(+), 423 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-22 2.5.0
2022-10-30 2.4.0
2022-09-07 2.3.0
2022-03-30 2.1.0
2021-11-11 2.0.0
2020-11-02 1.1.0
Title: R Templates from the University of Miami
Description: This holds some r markdown and quarto templates and a template to
create a research project in "R Studio".
Author: Raymond Balise [aut, cre] ,
Gabriel Odom [aut] ,
Kyle Grealis [aut] ,
Francisco Cardozo [aut] ,
Frank Gutierrez [ctb]
Maintainer: Raymond Balise <balise@miami.edu>
Diff between rUM versions 2.0.0 dated 2024-06-02 and 2.1.0 dated 2025-03-21
rUM-2.0.0/rUM/inst/doc/O1_make_research_project.R |only rUM-2.0.0/rUM/inst/doc/O1_make_research_project.Rmd |only rUM-2.0.0/rUM/inst/doc/O1_make_research_project.html |only rUM-2.0.0/rUM/inst/doc/O2_make_research_project_markdown.R |only rUM-2.0.0/rUM/inst/doc/O2_make_research_project_markdown.Rmd |only rUM-2.0.0/rUM/inst/doc/O2_make_research_project_markdown.html |only rUM-2.0.0/rUM/inst/doc/O3_R_Markdown_Templates.R |only rUM-2.0.0/rUM/inst/doc/O3_R_Markdown_Templates.Rmd |only rUM-2.0.0/rUM/inst/doc/O3_R_Markdown_Templates.html |only rUM-2.0.0/rUM/inst/doc/O4_make_a_package.R |only rUM-2.0.0/rUM/inst/doc/O4_make_a_package.Rmd |only rUM-2.0.0/rUM/inst/doc/O4_make_a_package.html |only rUM-2.0.0/rUM/inst/doc/O5_show_example.R |only rUM-2.0.0/rUM/inst/doc/O5_show_example.Rmd |only rUM-2.0.0/rUM/inst/doc/O5_show_example.html |only rUM-2.0.0/rUM/inst/gists/analysis_1_0_2_9001.Rmd |only rUM-2.0.0/rUM/inst/gists/analysis_1_0_2_9001.qmd |only rUM-2.0.0/rUM/inst/gists/analysis_wo_example_1_0_2_9001.Rmd |only rUM-2.0.0/rUM/inst/gists/analysis_wo_example_1_0_2_9001.qmd |only rUM-2.0.0/rUM/inst/gists/quarto_gist.qmd |only rUM-2.0.0/rUM/inst/gists/rmarkdown_gist.Rmd |only rUM-2.0.0/rUM/vignettes/O1_make_research_project.Rmd |only rUM-2.0.0/rUM/vignettes/O2_make_research_project_markdown.Rmd |only rUM-2.0.0/rUM/vignettes/O3_R_Markdown_Templates.Rmd |only rUM-2.0.0/rUM/vignettes/O4_make_a_package.Rmd |only rUM-2.0.0/rUM/vignettes/O5_show_example.Rmd |only rUM-2.1.0/rUM/DESCRIPTION | 20 rUM-2.1.0/rUM/MD5 | 93 +- rUM-2.1.0/rUM/NAMESPACE | 14 rUM-2.1.0/rUM/NEWS.md | 27 rUM-2.1.0/rUM/R/make_project.R | 393 ++++++---- rUM-2.1.0/rUM/R/rUM-package.R | 14 rUM-2.1.0/rUM/R/write_notes.R |only rUM-2.1.0/rUM/R/write_quarto.R |only rUM-2.1.0/rUM/R/write_readme.R |only rUM-2.1.0/rUM/R/write_scss.R |only rUM-2.1.0/rUM/README.md | 17 rUM-2.1.0/rUM/build/vignette.rds |binary rUM-2.1.0/rUM/inst/doc/OO1_using_posit_cloud.R |only rUM-2.1.0/rUM/inst/doc/OO1_using_posit_cloud.Rmd |only rUM-2.1.0/rUM/inst/doc/OO1_using_posit_cloud.html |only rUM-2.1.0/rUM/inst/doc/OO2_make_research_project.R |only rUM-2.1.0/rUM/inst/doc/OO2_make_research_project.Rmd |only rUM-2.1.0/rUM/inst/doc/OO2_make_research_project.html |only rUM-2.1.0/rUM/inst/doc/OO3_make_research_project_markdown.R |only rUM-2.1.0/rUM/inst/doc/OO3_make_research_project_markdown.Rmd |only rUM-2.1.0/rUM/inst/doc/OO3_make_research_project_markdown.html |only rUM-2.1.0/rUM/inst/doc/OO4_R_Markdown_Templates.R |only rUM-2.1.0/rUM/inst/doc/OO4_R_Markdown_Templates.Rmd |only rUM-2.1.0/rUM/inst/doc/OO4_R_Markdown_Templates.html |only rUM-2.1.0/rUM/inst/doc/OO5_make_a_package.R |only rUM-2.1.0/rUM/inst/doc/OO5_make_a_package.Rmd |only rUM-2.1.0/rUM/inst/doc/OO5_make_a_package.html |only rUM-2.1.0/rUM/inst/doc/OO6_show_example.R |only rUM-2.1.0/rUM/inst/doc/OO6_show_example.Rmd |only rUM-2.1.0/rUM/inst/doc/OO6_show_example.html |only rUM-2.1.0/rUM/inst/doc/OO7_write_scss.R |only rUM-2.1.0/rUM/inst/doc/OO7_write_scss.Rmd |only rUM-2.1.0/rUM/inst/doc/OO7_write_scss.html |only rUM-2.1.0/rUM/inst/doc/OO8_write_readme.R |only rUM-2.1.0/rUM/inst/doc/OO8_write_readme.Rmd |only rUM-2.1.0/rUM/inst/doc/OO8_write_readme.html |only rUM-2.1.0/rUM/inst/gists/README.md |only rUM-2.1.0/rUM/inst/gists/aggressive_gitignore.md |only rUM-2.1.0/rUM/inst/gists/analysis_qmd_with_example.qmd |only rUM-2.1.0/rUM/inst/gists/analysis_qmd_wo_example.qmd |only rUM-2.1.0/rUM/inst/gists/analysis_rmd_with_example.Rmd |only rUM-2.1.0/rUM/inst/gists/analysis_rmd_wo_example.Rmd |only rUM-2.1.0/rUM/inst/gists/default_quarto.qmd |only rUM-2.1.0/rUM/inst/gists/packages.bib | 97 -- rUM-2.1.0/rUM/man/make_project.Rd | 8 rUM-2.1.0/rUM/man/rUM-package.Rd | 2 rUM-2.1.0/rUM/man/write_notes.Rd |only rUM-2.1.0/rUM/man/write_quarto.Rd |only rUM-2.1.0/rUM/man/write_readme.Rd |only rUM-2.1.0/rUM/man/write_scss.Rd |only rUM-2.1.0/rUM/vignettes/OO1_using_posit_cloud.Rmd |only rUM-2.1.0/rUM/vignettes/OO2_make_research_project.Rmd |only rUM-2.1.0/rUM/vignettes/OO3_make_research_project_markdown.Rmd |only rUM-2.1.0/rUM/vignettes/OO4_R_Markdown_Templates.Rmd |only rUM-2.1.0/rUM/vignettes/OO5_make_a_package.Rmd |only rUM-2.1.0/rUM/vignettes/OO6_show_example.Rmd |only rUM-2.1.0/rUM/vignettes/OO7_write_scss.Rmd |only rUM-2.1.0/rUM/vignettes/OO8_write_readme.Rmd |only 84 files changed, 442 insertions(+), 243 deletions(-)
Title: Linear Quantile Mixture Models
Description: Estimate linear quantile mixtures based on Time-Constant (TC) and/or Time-Varying (TV), discrete, random coefficients.
Author: Maria Francesca Marino [aut, cre],
Marco Alfo' [aut],
Nicola Salvati [aut],
Maria Giovanna Ranalli [aut]
Maintainer: Maria Francesca Marino <mariafrancesca.marino@unifi.it>
Diff between lqmix versions 1.0 dated 2023-12-07 and 1.1 dated 2025-03-21
DESCRIPTION | 16 MD5 | 70 ++- NAMESPACE | 12 NEWS | 11 R/coef.seach_lqmix.R | 2 R/lqmix.R | 337 +++++++++--------- R/lqmixTC.R | 71 ++- R/lqmixTC.fit.R | 40 +- R/lqmixTCTV.fit_intermittent.R | 43 +- R/lqmixTCTV_intermittent.R | 117 +++--- R/lqmixTV.fit_intermittent.R | 34 + R/lqmixTV_intermittent.R | 125 ++++-- R/lqr.R | 85 ++-- R/lqr.fit.R | 11 R/pain.R | 62 +-- R/plot.lqmix.R | 139 +++---- R/plot.search_lqmix.R | 284 +++++++-------- R/postComputeTCTV_intermittent.R | 4 R/print.lqmix.R | 4 R/print.search_lqmix.R | 7 R/print.summary.lqmix.R | 5 R/print.summary.lqr.R | 3 R/print.summary.search_lqmix.R |only R/search_lqmix.R | 692 +++++++++++++++++++------------------- R/summary.lqmix.R | 388 ++++++++++----------- R/summary.search_lqmix.R |only build/partial.rdb |binary man/coef.search_lqmix.Rd | 2 man/dal.Rd | 3 man/lqmix.Rd | 18 man/lqr.Rd | 5 man/pain.Rd | 2 man/print.summary.lqmix.Rd | 2 man/print.summary.lqr.Rd | 2 man/print.summary.search_lqmix.Rd |only man/search_lqmix.Rd | 5 man/summary.lqmix.Rd | 2 man/summary.search_lqmix.Rd |only 38 files changed, 1371 insertions(+), 1232 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-30 1.1.0
2023-03-11 1.0.4
2023-01-05 1.0.3
2022-11-03 1.0.2
2022-10-10 1.0.1
Title: Worldwide or Coordinates-Based Heat Maps
Description: Easily plot heat maps of the world, based on continuous or categorical data. Country labels can also be added to the map.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between WorldMapR versions 1.1.0 dated 2025-01-28 and 1.2.0 dated 2025-03-21
WorldMapR-1.1.0/WorldMapR/tests/testthat/test2.R |only WorldMapR-1.1.0/WorldMapR/tests/testthat/test3.R |only WorldMapR-1.1.0/WorldMapR/tests/testthat/test4.R |only WorldMapR-1.1.0/WorldMapR/tests/testthat/test5.R |only WorldMapR-1.1.0/WorldMapR/tests/testthat/test6.R |only WorldMapR-1.1.0/WorldMapR/tests/testthat/testCat1.R |only WorldMapR-1.2.0/WorldMapR/DESCRIPTION | 16 - WorldMapR-1.2.0/WorldMapR/MD5 | 59 ++-- WorldMapR-1.2.0/WorldMapR/NAMESPACE | 83 ++---- WorldMapR-1.2.0/WorldMapR/NEWS.md | 10 WorldMapR-1.2.0/WorldMapR/R/WorldMapR-package.R | 1 WorldMapR-1.2.0/WorldMapR/R/countrycoord_data.R | 72 +++-- WorldMapR-1.2.0/WorldMapR/R/geometries_data.R | 10 WorldMapR-1.2.0/WorldMapR/R/globals.R | 3 WorldMapR-1.2.0/WorldMapR/R/map_df0.R |only WorldMapR-1.2.0/WorldMapR/R/worldplot.R | 41 +- WorldMapR-1.2.0/WorldMapR/R/worldplotCat.R | 30 -- WorldMapR-1.2.0/WorldMapR/build/vignette.rds |binary WorldMapR-1.2.0/WorldMapR/data/map_df0.RData |only WorldMapR-1.2.0/WorldMapR/inst/doc/WorldMapR_Vignette.R | 53 +-- WorldMapR-1.2.0/WorldMapR/inst/doc/WorldMapR_Vignette.Rmd | 11 WorldMapR-1.2.0/WorldMapR/inst/doc/WorldMapR_Vignette.html | 49 +-- WorldMapR-1.2.0/WorldMapR/man/WorldMapR-package.Rd | 46 +-- WorldMapR-1.2.0/WorldMapR/man/countrycoord_data.Rd | 76 ++--- WorldMapR-1.2.0/WorldMapR/man/geometries_data.Rd | 48 +-- WorldMapR-1.2.0/WorldMapR/man/map_df0.Rd |only WorldMapR-1.2.0/WorldMapR/man/testdata1.Rd | 40 +- WorldMapR-1.2.0/WorldMapR/man/testdata1b.Rd | 40 +- WorldMapR-1.2.0/WorldMapR/man/testdata1c.Rd | 42 +-- WorldMapR-1.2.0/WorldMapR/man/worldplot.Rd | 174 ++++++------ WorldMapR-1.2.0/WorldMapR/man/worldplotCat.Rd | 178 ++++++------- WorldMapR-1.2.0/WorldMapR/tests/testthat.R | 24 - WorldMapR-1.2.0/WorldMapR/tests/testthat/test1.R | 15 - WorldMapR-1.2.0/WorldMapR/tests/testthat/testCat2.R | 8 WorldMapR-1.2.0/WorldMapR/vignettes/WorldMapR_Vignette.Rmd | 11 35 files changed, 579 insertions(+), 561 deletions(-)
Title: Sparse Vectors for Use in Data Frames
Description: Provides sparse vectors powered by ALTREP (Alternative
Representations for R Objects) that behave like regular vectors, and
can thus be used in data frames. Also provides tools to convert
between sparse matrices and data frames with sparse columns and
functions to interact with sparse vectors.
Author: Emil Hvitfeldt [aut, cre] ,
Davis Vaughan [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between sparsevctrs versions 0.3.1 dated 2025-03-17 and 0.3.2 dated 2025-03-21
DESCRIPTION | 6 +-- MD5 | 12 +++--- NEWS.md | 6 +++ R/sparsity.R | 2 - src/sparse-arithmatic.c | 81 ++++++++++++++++++++++------------------- src/sparse-utils.c | 9 ++-- tests/testthat/test-sparsity.R | 73 ++++++++++++++++++++++++++++++++++++ 7 files changed, 139 insertions(+), 50 deletions(-)
Title: Extract 'REDCap' Databases into Tidy 'Tibble's
Description: Convert 'REDCap' exports into tidy tables for easy handling of 'REDCap' repeat instruments and event arms.
Author: Richard Hanna [aut, cre] ,
Stephan Kadauke [aut] ,
Ezra Porter [aut]
Maintainer: Richard Hanna <hannar1@chop.edu>
Diff between REDCapTidieR versions 1.2.1 dated 2024-12-09 and 1.2.2 dated 2025-03-21
DESCRIPTION | 10 ++--- MD5 | 41 ++++++++++++----------- NAMESPACE | 1 NEWS.md | 5 ++ R/REDCapTidieR-package.R | 1 R/combine_checkboxes.R | 9 ++--- R/labelled.R | 7 ++-- R/read_redcap.R | 64 ++++++++++++++++++++++++++++++++++++ R/write.R | 24 ++++++------- build/vignette.rds |binary man/REDCapTidieR-package.Rd | 2 - man/add_labelled_xlsx_features.Rd | 4 +- man/add_metadata_sheet.Rd | 4 +- man/add_supertbl_toc.Rd | 4 +- man/bind_supertbl_metadata.Rd | 2 - man/check_labelled.Rd | 2 - man/combine_checkboxes.Rd | 5 +- man/supertbl_recode.Rd | 2 - man/update_dag_cols.Rd |only man/write_redcap_xlsx.Rd | 2 - tests/testthat/_snaps/write.md | 26 +++++++------- tests/testthat/test-read_redcap.R | 66 ++++++++++++++++++++++++++++++++++++-- 22 files changed, 209 insertions(+), 72 deletions(-)
Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database <doi:10.1016/j.chemosphere.2024.143078>.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ECOTOXr versions 1.1.1 dated 2024-09-20 and 1.2.0 dated 2025-03-21
ECOTOXr-1.1.1/ECOTOXr/tests/testthat/test_that.r |only ECOTOXr-1.2.0/ECOTOXr/DESCRIPTION | 15 ECOTOXr-1.2.0/ECOTOXr/MD5 | 99 + ECOTOXr-1.2.0/ECOTOXr/NAMESPACE | 7 ECOTOXr-1.2.0/ECOTOXr/NEWS.md | 203 +-- ECOTOXr-1.2.0/ECOTOXr/R/ECOTOXr-package.r | 6 ECOTOXr-1.2.0/ECOTOXr/R/cas_handlers.r | 576 ++++---- ECOTOXr-1.2.0/ECOTOXr/R/database_access.r | 641 +++++---- ECOTOXr-1.2.0/ECOTOXr/R/helpers.r | 783 ++++++------ ECOTOXr-1.2.0/ECOTOXr/R/imports.r | 30 ECOTOXr-1.2.0/ECOTOXr/R/init.r | 978 +++++++-------- ECOTOXr-1.2.0/ECOTOXr/R/online.r | 546 ++++---- ECOTOXr-1.2.0/ECOTOXr/R/process_date.r |only ECOTOXr-1.2.0/ECOTOXr/R/process_numeric.r |only ECOTOXr-1.2.0/ECOTOXr/R/process_unit.r |only ECOTOXr-1.2.0/ECOTOXr/R/sysdata.rda |binary ECOTOXr-1.2.0/ECOTOXr/R/wrappers.r | 325 ++-- ECOTOXr-1.2.0/ECOTOXr/README.md | 140 -- ECOTOXr-1.2.0/ECOTOXr/build/vignette.rds |only ECOTOXr-1.2.0/ECOTOXr/inst/doc |only ECOTOXr-1.2.0/ECOTOXr/inst/ecotox-test.zip |only ECOTOXr-1.2.0/ECOTOXr/inst/openssl.cnf |only ECOTOXr-1.2.0/ECOTOXr/man/ECOTOXr-package.Rd | 6 ECOTOXr-1.2.0/ECOTOXr/man/as_date_ecotox.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/as_numeric_ecotox.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/as_unit_ecotox.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/build_ecotox_sqlite.Rd | 32 ECOTOXr-1.2.0/ECOTOXr/man/cas.Rd | 1 ECOTOXr-1.2.0/ECOTOXr/man/check_ecotox_availability.Rd | 11 ECOTOXr-1.2.0/ECOTOXr/man/check_ecotox_build.Rd | 22 ECOTOXr-1.2.0/ECOTOXr/man/check_ecotox_version.Rd | 28 ECOTOXr-1.2.0/ECOTOXr/man/cite_ecotox.Rd | 17 ECOTOXr-1.2.0/ECOTOXr/man/dbConnectEcotox.Rd | 23 ECOTOXr-1.2.0/ECOTOXr/man/download_ecotox_data.Rd | 17 ECOTOXr-1.2.0/ECOTOXr/man/figures/ecotox-schema.svg |only ECOTOXr-1.2.0/ECOTOXr/man/figures/ecotox-workflow.svg |only ECOTOXr-1.2.0/ECOTOXr/man/figures/graphical-abstract.png |only ECOTOXr-1.2.0/ECOTOXr/man/get_ecotox_info.Rd | 17 ECOTOXr-1.2.0/ECOTOXr/man/get_ecotox_url.Rd | 17 ECOTOXr-1.2.0/ECOTOXr/man/get_path.Rd | 17 ECOTOXr-1.2.0/ECOTOXr/man/list_ecotox_fields.Rd | 11 ECOTOXr-1.2.0/ECOTOXr/man/mixed_to_single_unit.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/process_ecotox_dates.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/process_ecotox_numerics.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/process_ecotox_units.Rd |only ECOTOXr-1.2.0/ECOTOXr/man/search_ecotox.Rd | 5 ECOTOXr-1.2.0/ECOTOXr/man/websearch.Rd | 35 ECOTOXr-1.2.0/ECOTOXr/man/websearch_comptox.Rd | 25 ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_build.r |only ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_cas.r | 130 + ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_exceptions.r |only ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_local.r |only ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_online.r | 256 ++- ECOTOXr-1.2.0/ECOTOXr/tests/testthat/test_sanitation.r |only ECOTOXr-1.2.0/ECOTOXr/vignettes |only 55 files changed, 2609 insertions(+), 2410 deletions(-)
Title: Headless Chrome Web Browser Interface
Description: An implementation of the 'Chrome DevTools Protocol', for
controlling a headless Chrome web browser.
Author: Garrick Aden-Buie [aut, cre] ,
Winston Chang [aut],
Barret Schloerke [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between chromote versions 0.4.0 dated 2025-01-24 and 0.5.0 dated 2025-03-21
DESCRIPTION | 28 MD5 | 111 +- NAMESPACE | 9 NEWS.md | 29 R/browser.R | 30 R/chrome.R | 69 - R/chromote-package.R | 24 R/chromote.R | 78 + R/chromote_session.R | 237 ++++- R/event_manager.R | 56 + R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/manage.R |only R/protocol.R | 19 R/screenshot.R | 20 R/utils.R | 21 README.md | 1525 +-------------------------------- build |only inst |only man/Browser.Rd | 11 man/ChromeRemote.Rd | 28 man/Chromote.Rd | 37 man/ChromoteSession.Rd | 159 +++ man/chrome_versions.Rd |only man/chrome_versions_list.Rd |only man/chromote-package.Rd | 6 man/figures/lifecycle-experimental.svg |only man/figures/logo.png |only man/fragments |only man/with_chrome_version.Rd |only tests/testthat/_snaps |only tests/testthat/helper.R | 26 tests/testthat/setup.R |only tests/testthat/test-chrome.R |only tests/testthat/test-chromote_session.R | 196 ++++ tests/testthat/test-manage.R |only vignettes |only 37 files changed, 1123 insertions(+), 1596 deletions(-)
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2024)
<doi:10.48550/arXiv.2401.10193> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.0.0 dated 2025-03-13 and 1.0.1 dated 2025-03-21
tinyVAST-1.0.0/tinyVAST/inst/doc/simultaneous_autoregressive_process.R |only tinyVAST-1.0.0/tinyVAST/inst/doc/simultaneous_autoregressive_process.Rmd |only tinyVAST-1.0.0/tinyVAST/inst/doc/simultaneous_autoregressive_process.html |only tinyVAST-1.0.0/tinyVAST/vignettes/simultaneous_autoregressive_process.Rmd |only tinyVAST-1.0.1/tinyVAST/DESCRIPTION | 8 tinyVAST-1.0.1/tinyVAST/MD5 | 63 ++--- tinyVAST-1.0.1/tinyVAST/NEWS.md | 9 tinyVAST-1.0.1/tinyVAST/R/family.R | 4 tinyVAST-1.0.1/tinyVAST/R/fit.R | 22 + tinyVAST-1.0.1/tinyVAST/R/internal.R | 8 tinyVAST-1.0.1/tinyVAST/R/methods.R | 2 tinyVAST-1.0.1/tinyVAST/R/predict.R | 6 tinyVAST-1.0.1/tinyVAST/R/utility.R | 60 +++-- tinyVAST-1.0.1/tinyVAST/build/partial.rdb |binary tinyVAST-1.0.1/tinyVAST/build/vignette.rds |binary tinyVAST-1.0.1/tinyVAST/inst/doc/dsem.html | 2 tinyVAST-1.0.1/tinyVAST/inst/doc/mgcv.Rmd | 2 tinyVAST-1.0.1/tinyVAST/inst/doc/mgcv.html | 4 tinyVAST-1.0.1/tinyVAST/inst/doc/spatial.R | 24 +- tinyVAST-1.0.1/tinyVAST/inst/doc/spatial.Rmd | 26 +- tinyVAST-1.0.1/tinyVAST/inst/doc/spatial.html | 9 tinyVAST-1.0.1/tinyVAST/inst/doc/spatial_factor_analysis.html | 2 tinyVAST-1.0.1/tinyVAST/man/families.Rd | 4 tinyVAST-1.0.1/tinyVAST/man/logLik.tinyVAST.Rd | 42 +-- tinyVAST-1.0.1/tinyVAST/man/print.tinyVAST.Rd | 40 +-- tinyVAST-1.0.1/tinyVAST/man/sample_variable.Rd | 13 - tinyVAST-1.0.1/tinyVAST/man/simulate.tinyVAST.Rd | 116 +++++----- tinyVAST-1.0.1/tinyVAST/man/tinyVASTcontrol.Rd | 7 tinyVAST-1.0.1/tinyVAST/src/tinyVAST.cpp | 18 + tinyVAST-1.0.1/tinyVAST/tests/testthat.R | 1 tinyVAST-1.0.1/tinyVAST/tests/testthat/Rplots.pdf |only tinyVAST-1.0.1/tinyVAST/tests/testthat/test-basic-fits.R | 4 tinyVAST-1.0.1/tinyVAST/tests/testthat/test-index-standardization.R | 4 tinyVAST-1.0.1/tinyVAST/vignettes/mgcv.Rmd | 2 tinyVAST-1.0.1/tinyVAST/vignettes/spatial.Rmd | 26 +- 35 files changed, 289 insertions(+), 239 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is detailed
in Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.1016/j.softx.2025.102087>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between cpp11armadillo versions 0.4.4 dated 2025-02-20 and 0.4.6 dated 2025-03-21
DESCRIPTION | 8 +++---- MD5 | 16 +++++++-------- NEWS.md | 8 +++++++ README.md | 11 +++++----- build/partial.rdb |binary build/vignette.rds |binary configure | 2 - inst/include/wrappers/matrices.hpp | 39 ++++++++++++++++++++++++++++++++----- inst/include/wrappers/vectors.hpp | 2 - 9 files changed, 61 insertions(+), 25 deletions(-)
More information about cpp11armadillo at CRAN
Permanent link
Title: Invariance Partial Pruning Test
Description: An implementation of the Invariance Partial Pruning (IVPP) approach
described in Du, X., Johnson, S. U., Epskamp, S. (2025) The Invariance Partial
Pruning Approach to The Network Comparison in Longitudinal Data. IVPP is a
two-step method that first test for global network structural difference with
invariance test and then inspect specific edge difference with partial pruning.
Author: Xinkai Du [aut, cre, cph]
Maintainer: Xinkai Du <xinkai.du.xd@gmail.com>
Diff between IVPP versions 1.0.0 dated 2025-02-11 and 1.1.0 dated 2025-03-21
IVPP-1.0.0/IVPP/LICENSE |only IVPP-1.1.0/IVPP/DESCRIPTION | 17 IVPP-1.1.0/IVPP/MD5 | 27 - IVPP-1.1.0/IVPP/NEWS.md | 13 IVPP-1.1.0/IVPP/R/IVPP.R | 819 +++++++++++++++++++--------------- IVPP-1.1.0/IVPP/R/dt_gen.R | 6 IVPP-1.1.0/IVPP/R/mod_gen.R | 43 - IVPP-1.1.0/IVPP/README.md | 122 +++-- IVPP-1.1.0/IVPP/man/IVPP-package.Rd | 2 IVPP-1.1.0/IVPP/man/IVPP_panelgvar.Rd | 73 ++- IVPP-1.1.0/IVPP/man/IVPP_tsgvar.Rd | 48 + IVPP-1.1.0/IVPP/man/gen_panelGVAR.Rd | 16 IVPP-1.1.0/IVPP/man/gen_tsGVAR.Rd | 11 IVPP-1.1.0/IVPP/man/sim_panelGVAR.Rd | 3 IVPP-1.1.0/IVPP/man/sim_tsGVAR.Rd | 3 15 files changed, 750 insertions(+), 453 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-29 0.1.2
2024-08-27 0.1.1
2024-08-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-02 0.4.4
2021-01-21 0.4.2
2019-12-12 0.2.0
2019-07-31 0.1.0
2018-12-23 0.0.9