Title: A Byte-Pair-Encoding (BPE) Tokenizer for OpenAI's Large Language
Models
Description: A thin wrapper around the tiktoken-rs crate, allowing to encode text into Byte-Pair-Encoding (BPE) tokens and decode tokens back to text. This is useful to understand how Large Language Models (LLMs) perceive text.
Author: David Zimmermann-Kollenda [aut, cre],
Roger Zurawicki [aut] ,
Authors of the dependent Rust crates [aut]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Diff between rtiktoken versions 0.0.6 dated 2024-11-06 and 0.0.7 dated 2025-04-14
rtiktoken-0.0.6/rtiktoken/src/Makevars |only rtiktoken-0.0.6/rtiktoken/src/Makevars.ucrt |only rtiktoken-0.0.6/rtiktoken/src/Makevars.win |only rtiktoken-0.0.7/rtiktoken/DESCRIPTION | 9 rtiktoken-0.0.7/rtiktoken/MD5 | 22 rtiktoken-0.0.7/rtiktoken/NEWS.md | 34 - rtiktoken-0.0.7/rtiktoken/configure | 2 rtiktoken-0.0.7/rtiktoken/configure.win | 4 rtiktoken-0.0.7/rtiktoken/src/Makevars.in |only rtiktoken-0.0.7/rtiktoken/src/Makevars.win.in |only rtiktoken-0.0.7/rtiktoken/src/rust/Cargo.lock | 745 +++++++++++------------ rtiktoken-0.0.7/rtiktoken/src/rust/Cargo.toml | 25 rtiktoken-0.0.7/rtiktoken/src/rust/vendor.tar.xz |binary rtiktoken-0.0.7/rtiktoken/tools/config.R |only rtiktoken-0.0.7/rtiktoken/tools/msrv.R | 232 +++---- 15 files changed, 544 insertions(+), 529 deletions(-)
Title: Parallel Low-Rank Approximation with Nonnegativity Constraints
Description: 'Rcpp' bindings for 'PLANC', a highly parallel
and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library.
Wraps algorithms described in
Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and
Eswar et. al (2021) <doi:10.1145/3432185>.
Implements algorithms described in
Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>,
Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and
Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Author: Andrew Robbins [aut, cre] ,
Yichen Wang [aut],
Joshua Welch [cph] ,
Ramakrishnan Kannan [cph] ,
UT-Batelle [cph]
Maintainer: Andrew Robbins <robbiand@umich.edu>
Diff between RcppPlanc versions 2.0.3 dated 2025-04-07 and 2.0.4 dated 2025-04-14
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ build/vignette.rds |binary inst/doc/RcppPlanc.html | 16 ++++++++-------- src/planc/CMakeLists.txt | 14 ++++++++++++-- src/planc/cmake/FindHWLOC.cmake | 2 -- src/planc/cmake/FindR.cmake | 15 ++++++++++++++- src/planc/common/data.cpp | 2 +- src/planc/nmf/CMakeLists.txt | 7 ------- src/planc/pyproject.toml | 28 ++++++++++++++++++---------- 11 files changed, 74 insertions(+), 45 deletions(-)
Title: A Light Wrapper Around the 'BM25' 'Rust' Crate for Okapi BM25
Text Search
Description: BM25 is a ranking function used by search engines to rank matching documents according to their relevance to a user's search query.
This package provides a light wrapper around the 'BM25' 'rust' crate for Okapi BM25 text search.
For more information, see Robertson et al. (1994) <https://trec.nist.gov/pubs/trec3/t3_proceedings.html>.
Author: David Zimmermann-Kollenda [aut, cre],
Michael Barlow [aut] ,
Authors of the dependency Rust crates [aut]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Diff between rbm25 versions 0.0.3 dated 2025-01-16 and 0.0.4 dated 2025-04-14
rbm25-0.0.3/rbm25/src/Makevars |only rbm25-0.0.3/rbm25/src/Makevars.win |only rbm25-0.0.4/rbm25/DESCRIPTION | 7 + rbm25-0.0.4/rbm25/MD5 | 21 ++--- rbm25-0.0.4/rbm25/NEWS.md | 9 ++ rbm25-0.0.4/rbm25/configure | 2 rbm25-0.0.4/rbm25/configure.win | 2 rbm25-0.0.4/rbm25/src/Makevars.in |only rbm25-0.0.4/rbm25/src/Makevars.win.in |only rbm25-0.0.4/rbm25/src/rust/Cargo.lock | 124 +++++++++++++++++-------------- rbm25-0.0.4/rbm25/src/rust/Cargo.toml | 3 rbm25-0.0.4/rbm25/src/rust/vendor.tar.xz |binary rbm25-0.0.4/rbm25/tools/config.R |only rbm25-0.0.4/rbm25/tools/msrv.R | 4 - 14 files changed, 98 insertions(+), 74 deletions(-)
Title: Interface to the 'open311' Standard
Description: Access and handle APIs that use the international 'open311'
'GeoReport v2' standard for civic issue tracking
<https://wiki.open311.org/GeoReport_v2/>. Retrieve civic service types
and request data. Select and add available 'open311' endpoints and
jurisdictions. Implicitly supports custom queries and 'open311'
extensions. Requires a minimal number of hard dependencies while
still allowing the integration in common R formats ('xml2', 'tibble',
'sf').
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jonas.lieth@gesis.org>
Diff between r311 versions 0.3.7 dated 2024-07-16 and 0.4.3 dated 2025-04-14
r311-0.3.7/r311/inst/doc/r311.R |only r311-0.4.3/r311/DESCRIPTION | 36 ++-- r311-0.4.3/r311/LICENSE | 2 r311-0.4.3/r311/MD5 | 42 ++-- r311-0.4.3/r311/NEWS.md | 23 ++ r311-0.4.3/r311/R/api.R | 80 ++++++--- r311-0.4.3/r311/R/assert.R | 12 - r311-0.4.3/r311/R/endpoints.R | 15 + r311-0.4.3/r311/R/ok.R | 8 r311-0.4.3/r311/R/query.R | 32 ++- r311-0.4.3/r311/R/requests.R | 19 +- r311-0.4.3/r311/R/utils.R | 59 ++++++ r311-0.4.3/r311/R/validate.R | 12 + r311-0.4.3/r311/README.md | 69 +++++--- r311-0.4.3/r311/build/vignette.rds |binary r311-0.4.3/r311/inst/CITATION |only r311-0.4.3/r311/inst/doc/r311.Rmd | 210 ++++++++++++++++++++---- r311-0.4.3/r311/inst/doc/r311.html | 222 ++++++++++++++------------ r311-0.4.3/r311/inst/endpoints.json | 48 ++++- r311-0.4.3/r311/man/figures/logo.png |only r311-0.4.3/r311/man/figures/map-1.png |only r311-0.4.3/r311/tests/testthat/test-queries.R | 35 ++-- r311-0.4.3/r311/vignettes/precompute.R |only r311-0.4.3/r311/vignettes/r311.Rmd | 210 ++++++++++++++++++++---- r311-0.4.3/r311/vignettes/r311.Rmd.orig |only 25 files changed, 817 insertions(+), 317 deletions(-)
Title: Execute R in a 'Docker' Context
Description: The goal of 'jetty' is to execute R functions and code
snippets in an isolated R subprocess within a 'Docker' container
and return the evaluated results to the local R session. 'jetty'
can install necessary packages at runtime and seamlessly propagates
errors and outputs from the 'Docker' subprocess back to the main
session. 'jetty' is primarily designed for sandboxed testing and
quick execution of example code.
Author: Daniel Molitor [aut, cph, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between jetty versions 0.2.0 dated 2025-01-24 and 0.2.1 dated 2025-04-14
DESCRIPTION | 6 +-- MD5 | 22 ++++++------- NEWS.md | 8 ++++ R/run.R | 50 ++++++++++++++++++++++-------- R/script.R | 33 ++++++++++++++------ R/utils.R | 44 ++++++++++++++++++++------- README.md | 70 +++++++++++++++++++++++++++++-------------- man/run.Rd | 25 +++++++++++---- man/run_script.Rd | 28 ++++++++++++----- tests/testthat/test-docker.R | 38 +++++++++++++++++++---- tests/testthat/test-script.R | 6 ++- tests/testthat/test-utils.R | 1 12 files changed, 239 insertions(+), 92 deletions(-)
Title: Generation of Multivariate Ordinal Variates
Description: A method for multivariate ordinal data generation given marginal distributions and correlation matrix based on the methodology proposed by Demirtas (2006) <DOI:10.1080/10629360600569246>.
Author: Anup Amatya [aut],
Hakan Demirtas [aut],
Ran Gao [aut, cre]
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between MultiOrd versions 2.4.3 dated 2021-03-05 and 2.4.4 dated 2025-04-14
DESCRIPTION | 21 ++++++++++++++++----- MD5 | 8 ++++---- man/MultiOrd-package.Rd | 4 ++-- man/compute.sigma.star.Rd | 2 +- man/generate.binary.Rd | 2 +- 5 files changed, 24 insertions(+), 13 deletions(-)
Title: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Description: Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev@nyumc.org>
Diff between msigdbr versions 10.0.1 dated 2025-03-19 and 10.0.2 dated 2025-04-14
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 4 ++ build/partial.rdb |binary tests/testthat/test-msigdbr-collections.R | 6 +-- tests/testthat/test-msigdbr.R | 59 +++++++++++++++--------------- 6 files changed, 46 insertions(+), 39 deletions(-)
Title: Simultaneous Generation of Multivariate Binary and Normal
Variates
Description: Generating multiple binary and normal variables simultaneously given marginal characteristics and association structure based on the methodology proposed by Demirtas and Doganay (2012) <DOI:10.1080/10543406.2010.521874>.
Author: Anup Amatya [aut],
Hakan Demirtas [aut],
Ran Gao [aut, cre]
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between BinNor versions 2.3.3 dated 2021-03-05 and 2.3.4 dated 2025-04-14
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 8 ++++---- man/BinNor-package.Rd | 4 ++-- man/compute.sigma.star.Rd | 2 +- man/jointly.generate.binary.normal.Rd | 2 +- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve:
linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs
('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or
problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<https://people.engr.tamu.edu/davis/suitesparse.html>).
Author: Florian Schwendinger [aut, cre],
Brendan O'Donoghue [aut, cph],
Balasubramanian Narasimhan [aut],
Timothy A. Davis [cph],
Patrick R. Amestory [cph],
Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between scs versions 3.2.4 dated 2023-04-11 and 3.2.7 dated 2025-04-14
scs-3.2.4/scs/src/scs/test |only scs-3.2.7/scs/DESCRIPTION | 6 scs-3.2.7/scs/MD5 | 76 ++++------ scs-3.2.7/scs/R/sparse.R | 2 scs-3.2.7/scs/configure |only scs-3.2.7/scs/configure.win |only scs-3.2.7/scs/inst/patch_scs.R |only scs-3.2.7/scs/src/Makevars | 2 scs-3.2.7/scs/src/Makevars.win | 2 scs-3.2.7/scs/src/scs/CMakeLists.txt | 21 +- scs-3.2.7/scs/src/scs/Makefile | 2 scs-3.2.7/scs/src/scs/docs/src/Doxyfile | 2 scs-3.2.7/scs/src/scs/docs/src/api/index.rst | 3 scs-3.2.7/scs/src/scs/docs/src/api/javascript.rst |only scs-3.2.7/scs/src/scs/docs/src/citing/index.rst | 4 scs-3.2.7/scs/src/scs/docs/src/conf.py | 2 scs-3.2.7/scs/src/scs/docs/src/examples/index.rst | 3 scs-3.2.7/scs/src/scs/docs/src/examples/javascript.rst |only scs-3.2.7/scs/src/scs/docs/src/examples/javascript_disc.html |only scs-3.2.7/scs/src/scs/docs/src/files/qp_solvers_benchmark.png |only scs-3.2.7/scs/src/scs/docs/src/index.rst | 18 ++ scs-3.2.7/scs/src/scs/docs/src/install/index.rst | 3 scs-3.2.7/scs/src/scs/docs/src/install/javascript.rst |only scs-3.2.7/scs/src/scs/docs/src/install/python.rst | 39 ++--- scs-3.2.7/scs/src/scs/include/glbopts.h | 5 scs-3.2.7/scs/src/scs/include/scs_blas.h | 4 scs-3.2.7/scs/src/scs/linsys/cpu/direct/private.c | 2 scs-3.2.7/scs/src/scs/linsys/cpu/indirect/private.c | 2 scs-3.2.7/scs/src/scs/scs.mk | 2 scs-3.2.7/scs/src/scs/src/cones.c | 4 scs-3.2.7/scs/src/scs/src/linalg.c | 25 ++- scs-3.2.7/scs/src/scs/src/rw.c | 14 + scs-3.2.7/scs/src/scs/src/scs.c | 34 ++-- 33 files changed, 166 insertions(+), 111 deletions(-)
Title: Collect your Microinverter Data
Description: Collect and normalize local microinverter energy and power production
data through off-cloud API requests. Currently supports 'APSystems', 'Enphase',
and 'Fronius' microinverters.
Author: Christophe Regouby [aut, cre, cph]
Maintainer: Christophe Regouby <christophe.regouby@free.fr>
Diff between microinverterdata versions 0.2.0 dated 2024-10-24 and 0.3.0 dated 2025-04-14
microinverterdata-0.2.0/microinverterdata/tests/testthat/f/fronius |only microinverterdata-0.2.0/microinverterdata/tests/testthat/f/fronius2 |only microinverterdata-0.3.0/microinverterdata/DESCRIPTION | 14 - microinverterdata-0.3.0/microinverterdata/MD5 | 60 +++--- microinverterdata-0.3.0/microinverterdata/NAMESPACE | 1 microinverterdata-0.3.0/microinverterdata/NEWS.md | 11 + microinverterdata-0.3.0/microinverterdata/R/get_alarm.R | 12 + microinverterdata-0.3.0/microinverterdata/R/get_output_data.R | 3 microinverterdata-0.3.0/microinverterdata/R/query_device.R | 55 +++-- microinverterdata-0.3.0/microinverterdata/README.md | 10 - microinverterdata-0.3.0/microinverterdata/build/vignette.rds |binary microinverterdata-0.3.0/microinverterdata/inst/WORDLIST |only microinverterdata-0.3.0/microinverterdata/inst/doc/data_collection.R | 2 microinverterdata-0.3.0/microinverterdata/inst/doc/data_collection.Rmd | 10 - microinverterdata-0.3.0/microinverterdata/inst/doc/data_collection.html | 8 microinverterdata-0.3.0/microinverterdata/inst/doc/data_visualization.R |only microinverterdata-0.3.0/microinverterdata/inst/doc/data_visualization.Rmd |only microinverterdata-0.3.0/microinverterdata/inst/doc/data_visualization.html |only microinverterdata-0.3.0/microinverterdata/inst/inverter_data.R | 2 microinverterdata-0.3.0/microinverterdata/tests/testthat/f/f.local |only microinverterdata-0.3.0/microinverterdata/tests/testthat/f/g.local |only microinverterdata-0.3.0/microinverterdata/tests/testthat/helper.R |only microinverterdata-0.3.0/microinverterdata/tests/testthat/test-get_alarm.R | 65 ++++-- microinverterdata-0.3.0/microinverterdata/tests/testthat/test-get_device_info.R | 53 ++++- microinverterdata-0.3.0/microinverterdata/tests/testthat/test-get_output_data.R | 94 +++++----- microinverterdata-0.3.0/microinverterdata/vignettes/data_collection.Rmd | 10 - microinverterdata-0.3.0/microinverterdata/vignettes/data_visualization.Rmd |only microinverterdata-0.3.0/microinverterdata/vignettes/images/clipboard-1910922645.png |only microinverterdata-0.3.0/microinverterdata/vignettes/images/clipboard-2353412704.png |only microinverterdata-0.3.0/microinverterdata/vignettes/images/clipboard-2871760223.png |only microinverterdata-0.3.0/microinverterdata/vignettes/images/clipboard-680957511.png |only 31 files changed, 258 insertions(+), 152 deletions(-)
More information about microinverterdata at CRAN
Permanent link
Title: Crew Launcher Plugins for Traditional High-Performance Computing
Clusters
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'crew.cluster' package extends the 'mirai'-powered
'crew' package with worker launcher plugins for traditional
high-performance computing systems.
Inspiration also comes from packages 'mirai' by Gao (2023)
<https://github.com/r-lib/mirai>,
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischl, and Surmann (2017).
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Michael Gilbert Levin [aut] ,
Brendan Furneaux [aut] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew.cluster versions 0.3.4 dated 2025-02-05 and 0.3.7 dated 2025-04-14
DESCRIPTION | 10 +++---- MD5 | 36 ++++++++++++++-------------- NEWS.md | 12 +++++++++ R/crew_controller_lsf.R | 4 ++- R/crew_controller_pbs.R | 4 ++- R/crew_controller_sge.R | 4 ++- R/crew_controller_slurm.R | 4 ++- R/crew_launcher_slurm.R | 5 +++ R/crew_options_slurm.R | 14 ++++++++-- R/crew_package.R | 4 +-- man/crew.cluster-package.Rd | 4 +-- man/crew_controller_lsf.Rd | 24 +++++++++++++++--- man/crew_controller_pbs.Rd | 24 +++++++++++++++--- man/crew_controller_sge.Rd | 24 +++++++++++++++--- man/crew_controller_slurm.Rd | 24 +++++++++++++++--- man/crew_options_slurm.Rd | 9 ++++++- tests/testthat/test-crew_controller_slurm.R | 20 ++++++++++++++- tests/testthat/test-crew_launcher_slurm.R | 4 ++- tests/testthat/test-crew_options_slurm.R | 6 +++- 19 files changed, 180 insertions(+), 56 deletions(-)
Title: A Crew Launcher Plugin for AWS Batch
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'crew.aws.batch' package extends the 'mirai'-powered
'crew' package with a worker launcher plugin for AWS Batch.
Inspiration also comes from packages 'mirai' by Gao (2023)
<https://github.com/r-lib/mirai>,
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischl, and Surmann (2017).
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew.aws.batch versions 0.0.8 dated 2025-02-05 and 0.0.10 dated 2025-04-14
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/crew_controller_aws_batch.R | 4 +++- R/crew_package.R | 4 ++-- man/crew.aws.batch-package.Rd | 4 ++-- man/crew_controller_aws_batch.Rd | 24 ++++++++++++++++++++---- 7 files changed, 46 insertions(+), 20 deletions(-)
More information about crew.aws.batch at CRAN
Permanent link
Title: Query the USDA NWCC Air and Water Database REST API
Description: Query the four endpoints of the 'Air and Water Database (AWDB) REST
API' maintained by the National Water and Climate Center (NWCC) at the
United States Department of Agriculture (USDA). Endpoints include data,
forecast, reference-data, and metadata. The package is extremely light
weight, with 'Rust' via 'extendr' doing most of the heavy lifting to
deserialize and flatten deeply nested 'JSON' responses. The AWDB can be
found at <https://wcc.sc.egov.usda.gov/awdbRestApi/swagger-ui/index.html>.
Author: Kenneth Blake Vernon [aut, cre, cph]
Maintainer: Kenneth Blake Vernon <kenneth.b.vernon@gmail.com>
Diff between awdb versions 0.1.1 dated 2025-02-26 and 0.1.2 dated 2025-04-14
DESCRIPTION | 8 - MD5 | 23 +- NEWS.md | 6 README.md | 1 configure | 15 - configure.win | 17 -- src/Makevars.in | 14 + src/Makevars.win.in | 89 +++++------ src/rust/Cargo.lock | 391 +++++++++++++++++++++++++------------------------ src/rust/Cargo.toml | 31 ++- src/rust/vendor.tar.xz |binary tools/config.R |only tools/msrv.R | 232 ++++++++++++++--------------- 13 files changed, 407 insertions(+), 420 deletions(-)
Title: A Stochastic Weather Generator with Seasonality
Description: A weather generator to simulate precipitation and temperature for regions with seasonality. Users input training data containing precipitation, temperature, and seasonality (up to 26 seasons). Including weather season as a training variable allows users to explore the effects of potential changes in season duration as well as average start- and end-time dates due to phenomena like climate change. Data for training should be a single time series but can originate from station data, basin averages, grid cells, etc.
Bearup, L., Gangopadhyay, S., & Mikkelson, K. (2021). "Hydroclimate Analysis Lower Santa Cruz River Basin Study (Technical Memorandum No ENV-2020-056)." Bureau of Reclamation.
Gangopadhyay, S., Bearup, L. A., Verdin, A., Pruitt, T., Halper, E., & Shamir, E. (2019, December 1). "A collaborative stochastic weather generator for climate impacts assessment in the Lower Santa Cruz River Basin, Arizona." Fall Meeting 2019, American Geophysical Union. <https://ui.adsabs.ha [...truncated...]
Author: Subhrendu Gangopadhyay [aut],
Lindsay Bearup [aut],
David Woodson [aut, cre],
Marketa McGuire [aut],
Andrew Verdin [aut],
Eylon Shamir [aut],
Eve Halper [aut]
Maintainer: David Woodson <dwoodson@usbr.gov>
Diff between wxgenR versions 1.4.3 dated 2025-03-14 and 1.4.4 dated 2025-04-14
DESCRIPTION | 14 ++++++----- MD5 | 24 +++++++++++++------- NAMESPACE | 22 ++++++++++++++++++ R/BOCO_sims.R |only R/generate_TmaxTmin.R |only R/getTpars.R | 8 +++++- R/multisite_shuffle.R |only R/wx.R | 26 ++++++++++++++++------ R/wxgenR.R | 5 ++-- R/zzz.R |only data/BOCO_sims.rda |only inst/doc/Vignette_BlacksburgVA.html | 6 ++--- inst/doc/Vignette_LowerSantaCruzRiverBasinAZ.html | 6 ++--- man/BOCO_sims.Rd |only man/generate_TmaxTmin.Rd |only man/multisite_shuffle.Rd |only man/wx.Rd | 5 +++- 17 files changed, 84 insertions(+), 32 deletions(-)
Title: Genomic Prediction of Hybrid Performance with Graphical User
Interface
Description: Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, XGBoost and LightGBM.
GBLUP: genomic best liner unbiased prediction, RKHS: reproducing kernel Hilbert space, PLS: partial least squares regression, LASSO: least absolute shrinkage and selection operator, XGBoost: extreme gradient boosting, LightGBM: light gradient boosting machine.
It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) <doi:10.1111/tpj.13242>; Xu S (2017) <doi:10.1534/g3.116.038059>).
Author: Yang Xu [aut],
Guangning Yu [aut],
Yuxiang Zhang [aut, cre],
Yanru Cui [ctb],
Shizhong Xu [ctb],
Chenwu Xu [ctb]
Maintainer: Yuxiang Zhang <yuxiangzhang_99@foxmail.com>
Diff between predhy.GUI versions 2.0.1 dated 2024-06-17 and 2.1 dated 2025-04-14
predhy.GUI-2.0.1/predhy.GUI/inst/doc |only predhy.GUI-2.1/predhy.GUI/DESCRIPTION | 10 - predhy.GUI-2.1/predhy.GUI/MD5 | 10 - predhy.GUI-2.1/predhy.GUI/NAMESPACE | 4 predhy.GUI-2.1/predhy.GUI/R/import_packages.R | 6 predhy.GUI-2.1/predhy.GUI/R/predhy.GUI.R | 199 +++++++++++++++----------- predhy.GUI-2.1/predhy.GUI/inst/manual |only 7 files changed, 135 insertions(+), 94 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut, cre]
Maintainer: Christina De Cesaris <cmdecesaris@ucdavis.edu>
Diff between vectorsurvR versions 1.3.0 dated 2025-01-07 and 1.3.1 dated 2025-04-14
vectorsurvR-1.3.0/vectorsurvR/R/utils-dplyr-aliases.R |only vectorsurvR-1.3.1/vectorsurvR/DESCRIPTION | 12 vectorsurvR-1.3.1/vectorsurvR/MD5 | 55 vectorsurvR-1.3.1/vectorsurvR/NAMESPACE | 13 vectorsurvR-1.3.1/vectorsurvR/R/data.R | 16 vectorsurvR-1.3.1/vectorsurvR/R/getAbundance.R | 53 vectorsurvR-1.3.1/vectorsurvR/R/getAbundanceAnomaly.R | 26 vectorsurvR-1.3.1/vectorsurvR/R/getAbundanceMapData.R |only vectorsurvR-1.3.1/vectorsurvR/R/getArthroCollections.R | 11 vectorsurvR-1.3.1/vectorsurvR/R/getInfectionRate.R | 14 vectorsurvR-1.3.1/vectorsurvR/R/getPools.R | 24 vectorsurvR-1.3.1/vectorsurvR/R/getSpatialFeatures.R |only vectorsurvR-1.3.1/vectorsurvR/R/getVectorIndex.R | 95 vectorsurvR-1.3.1/vectorsurvR/R/globals.R | 8 vectorsurvR-1.3.1/vectorsurvR/data/sample_collections.rda |binary vectorsurvR-1.3.1/vectorsurvR/data/sample_pools.rda |binary vectorsurvR-1.3.1/vectorsurvR/data/sample_spatial.rda |only vectorsurvR-1.3.1/vectorsurvR/inst/doc/vectorsurvR.R | 23 vectorsurvR-1.3.1/vectorsurvR/inst/doc/vectorsurvR.Rmd | 24 vectorsurvR-1.3.1/vectorsurvR/inst/doc/vectorsurvR.html | 3509 +++++++--- vectorsurvR-1.3.1/vectorsurvR/man/getAbundance.Rd | 11 vectorsurvR-1.3.1/vectorsurvR/man/getAbundanceAnomaly.Rd | 9 vectorsurvR-1.3.1/vectorsurvR/man/getAbundanceMapData.Rd |only vectorsurvR-1.3.1/vectorsurvR/man/getArthroCollections.Rd | 4 vectorsurvR-1.3.1/vectorsurvR/man/getInfectionRate.Rd | 3 vectorsurvR-1.3.1/vectorsurvR/man/getSpatialFeatures.Rd |only vectorsurvR-1.3.1/vectorsurvR/man/getVectorIndex.Rd | 9 vectorsurvR-1.3.1/vectorsurvR/man/sample_collections.Rd | 2 vectorsurvR-1.3.1/vectorsurvR/man/sample_pools.Rd | 2 vectorsurvR-1.3.1/vectorsurvR/man/sample_spatial.Rd |only vectorsurvR-1.3.1/vectorsurvR/tests/testthat/test-getAbundance.R | 25 vectorsurvR-1.3.1/vectorsurvR/vignettes/vectorsurvR.Rmd | 24 32 files changed, 2993 insertions(+), 979 deletions(-)
Title: Variable Selection under Ranked Sparsity Principles for
Interactions and Polynomials
Description: An implementation of ranked sparsity methods, including
penalized regression methods such as the sparsity-ranked lasso, its
non-convex alternatives, and elastic net, as well as the sparsity-ranked
Bayesian Information Criterion. As described in Peterson and
Cavanaugh (2022) <doi:10.1007/s10182-021-00431-7>, ranked
sparsity is a philosophy with methods primarily useful for
variable selection in the presence of prior informational
asymmetry, which occurs in the context of trying to perform variable
selection in the presence of interactions and/or polynomials. Ultimately,
this package attempts to facilitate dealing with cumbersome interactions
and polynomials while not avoiding them entirely. Typically, models
selected under ranked sparsity principles will also be more transparent,
having fewer falsely selected interactions and polynomials than other
methods.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between sparseR versions 0.3.1 dated 2024-07-17 and 0.3.2 dated 2025-04-14
DESCRIPTION | 10 ++--- MD5 | 12 +++--- NEWS.md | 6 ++- inst/doc/sparseR.R | 86 +++++++++++++++++++++++++------------------------- inst/doc/sparseR.Rmd | 2 - inst/doc/sparseR.html | 6 +-- vignettes/sparseR.Rmd | 2 - 7 files changed, 64 insertions(+), 60 deletions(-)
Title: Sparse Vectors for Use in Data Frames
Description: Provides sparse vectors powered by ALTREP (Alternative
Representations for R Objects) that behave like regular vectors, and
can thus be used in data frames. Also provides tools to convert
between sparse matrices and data frames with sparse columns and
functions to interact with sparse vectors.
Author: Emil Hvitfeldt [aut, cre] ,
Davis Vaughan [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between sparsevctrs versions 0.3.2 dated 2025-03-21 and 0.3.3 dated 2025-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/coerce.R | 2 +- tests/testthat/test-coerce.R | 19 +++++++++++++++++++ 5 files changed, 33 insertions(+), 8 deletions(-)
Title: Tidy Statistical Inference
Description: The objective of this package is to perform inference using
an expressive statistical grammar that coheres with the tidy design
framework.
Author: Andrew Bray [aut],
Chester Ismay [aut] ,
Evgeni Chasnovski [aut] ,
Simon Couch [aut, cre] ,
Ben Baumer [aut] ,
Mine Cetinkaya-Rundel [aut] ,
Ted Laderas [ctb] ,
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Y. Kim [ctb] ,
Neal Fultz [ctb],
Doug Fr [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between infer versions 1.0.7 dated 2024-03-25 and 1.0.8 dated 2025-04-14
DESCRIPTION | 13 MD5 | 75 ++-- NEWS.md | 6 R/print_methods.R | 6 R/visualize.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/anova.Rmd | 8 inst/doc/anova.html | 40 +- inst/doc/chi_squared.R | 106 ++++-- inst/doc/chi_squared.Rmd | 114 ++++--- inst/doc/chi_squared.html | 148 +++++---- inst/doc/infer.R | 12 inst/doc/infer.Rmd | 32 + inst/doc/infer.html | 97 +++-- inst/doc/observed_stat_examples.R | 91 +++-- inst/doc/observed_stat_examples.Rmd | 107 +++--- inst/doc/observed_stat_examples.html | 260 ++++++++-------- inst/doc/paired.R | 6 inst/doc/paired.Rmd | 8 inst/doc/paired.html | 24 - inst/doc/t_test.R | 11 inst/doc/t_test.Rmd | 23 - inst/doc/t_test.html | 49 +-- tests/testthat/_snaps/print.md |only tests/testthat/_snaps/visualize/viz-fit-bare.svg | 40 +- tests/testthat/_snaps/visualize/viz-fit-conf-int.svg | 40 +- tests/testthat/_snaps/visualize/viz-fit-no-h0.svg | 40 +- tests/testthat/_snaps/visualize/viz-fit-p-val-both.svg | 40 +- tests/testthat/_snaps/visualize/viz-fit-p-val-left.svg | 40 +- tests/testthat/_snaps/visualize/viz-fit-p-val-right.svg | 40 +- tests/testthat/test-print.R | 4 tests/testthat/test-visualize.R | 1 vignettes/anova.Rmd | 8 vignettes/chi_squared.Rmd | 114 ++++--- vignettes/infer.Rmd | 32 + vignettes/observed_stat_examples.Rmd | 107 +++--- vignettes/paired.Rmd | 8 vignettes/t_test.Rmd | 23 - 39 files changed, 993 insertions(+), 782 deletions(-)
Title: Retrieve and Analyze Clinical Trials Data from Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' (<https://clinicaltrials.gov/> and also
translating queries the retired classic interface), the
'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Protocols, statistical analysis plans, informed consent sheets and other
documents in registers associated with trials can also be downloaded.
Other functions implement trial concepts canonically across registers,
identify deduplicated records, easily find and extract variables
(fields) of interest even from complex nested data as used by the
re [...truncated...]
Author: Ralf Herold [aut, cre] ,
Marek Kubica [cph] ,
Ivan Bozhanov [cph]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.21.1 dated 2025-03-15 and 1.22.0 dated 2025-04-14
DESCRIPTION | 26 MD5 | 142 +- NEWS.md | 14 R/ctrGenerateQueries.R | 248 +++ R/ctrLoadQueryIntoDb.R | 36 R/ctrLoadQueryIntoDbCtgov2.R | 8 R/ctrLoadQueryIntoDbCtis.R | 8 R/ctrLoadQueryIntoDbEuctr.R | 1 R/ctrLoadQueryIntoDbIsrctn.R | 28 R/ctrOpenSearchPagesInBrowser.R | 18 R/ctrRerunQuery.R | 383 ++++- R/ctrdata-package.R | 33 R/ctrdata-registers.R | 21 R/ctrdata-trial-concepts.R | 8 R/f_controlType.R | 5 R/f_isMedIntervTrial.R | 409 ++--- R/f_isUniqueTrial.R | 6 R/f_likelyPlatformTrial.R | 9 R/f_numSites.R | 4 R/f_numTestArmsSubstances.R | 4 R/f_primaryEndpointDescription.R | 4 R/f_primaryEndpointResults.R | 4 R/f_resultsDate.R | 4 R/f_sampleSize.R | 4 R/f_sponsorType.R | 4 R/f_startDate.R | 5 R/f_statusRecruitment.R | 472 +++--- R/f_trialObjectives.R | 98 + R/f_trialPhase.R | 350 ++-- R/f_trialPopulation.R | 15 R/f_trialTitle.R | 4 R/util_fields.R | 259 +++ R/util_functions.R | 6 README.md | 247 +-- inst/WORDLIST | 5 inst/doc/ctrdata_install.Rmd | 2 inst/doc/ctrdata_install.html | 2 inst/doc/ctrdata_summarise.R | 61 inst/doc/ctrdata_summarise.Rmd | 67 inst/doc/ctrdata_summarise.html | 1054 +++++++-------- inst/htmlwidgets/update.sh | 5 inst/js/update.sh | 4 inst/tinytest/ctrdata_ctis.R | 108 + inst/tinytest/ctrdata_isrctn.R | 1 inst/tinytest/test_ctrdata_function_ctrgeneratequeries.R | 67 inst/tinytest/test_ctrdata_function_trial-concepts.R | 6 man/ctrGenerateQueries.Rd | 25 man/ctrLoadQueryIntoDb.Rd | 7 man/ctrOpenSearchPagesInBrowser.Rd | 7 man/ctrdata-package.Rd | 10 man/ctrdata-registers.Rd | 21 man/ctrdata-trial-concepts.Rd | 8 man/ctrdata.Rd | 35 man/f.controlType.Rd | 5 man/f.isMedIntervTrial.Rd | 4 man/f.isUniqueTrial.Rd | 4 man/f.likelyPlatformTrial.Rd | 5 man/f.numSites.Rd | 4 man/f.numTestArmsSubstances.Rd | 4 man/f.primaryEndpointDescription.Rd | 4 man/f.primaryEndpointResults.Rd | 4 man/f.resultsDate.Rd | 4 man/f.sampleSize.Rd | 4 man/f.sponsorType.Rd | 4 man/f.startDate.Rd | 5 man/f.statusRecruitment.Rd | 4 man/f.trialObjectives.Rd | 4 man/f.trialPhase.Rd | 4 man/f.trialPopulation.Rd | 11 man/f.trialTitle.Rd | 4 vignettes/ctrdata_install.Rmd | 2 vignettes/ctrdata_summarise.Rmd | 67 72 files changed, 2846 insertions(+), 1683 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A large C/C++-based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust, and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R.
It further includes fast functions for common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data.
It seamlessly supports base R objects/classes [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
Alina Cherkas [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999- [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.1.0 dated 2025-03-10 and 2.1.1 dated 2025-04-14
collapse-2.1.0/collapse/inst/WORDLIST |only collapse-2.1.0/collapse/tests/testthat/testthat-problems.rds |only collapse-2.1.1/collapse/DESCRIPTION | 16 - collapse-2.1.1/collapse/MD5 | 36 ++-- collapse-2.1.1/collapse/NEWS.md | 6 collapse-2.1.1/collapse/R/fslice.R | 2 collapse-2.1.1/collapse/R/pivot.R | 4 collapse-2.1.1/collapse/inst/doc/collapse_documentation.html | 4 collapse-2.1.1/collapse/inst/doc/collapse_for_tidyverse_users.R | 4 collapse-2.1.1/collapse/inst/doc/collapse_for_tidyverse_users.Rmd | 4 collapse-2.1.1/collapse/inst/doc/collapse_for_tidyverse_users.html | 82 +++------- collapse-2.1.1/collapse/inst/doc/collapse_object_handling.html | 4 collapse-2.1.1/collapse/man/collapse-package.Rd | 24 +- collapse-2.1.1/collapse/man/efficient-programming.Rd | 4 collapse-2.1.1/collapse/man/fquantile.Rd | 2 collapse-2.1.1/collapse/src/internal/R_defn.h | 2 collapse-2.1.1/collapse/src/kit_dup.c | 21 ++ collapse-2.1.1/collapse/src/small_helper.c | 2 collapse-2.1.1/collapse/tests/testthat/test-fmutate.R | 2 collapse-2.1.1/collapse/vignettes/collapse_for_tidyverse_users.Rmd | 4 20 files changed, 115 insertions(+), 108 deletions(-)
Title: Additional Operators for Image Models
Description: Implements additional operators for computer vision models, including
operators necessary for image segmentation and object detection deep learning
models.
Author: Daniel Falbel [aut, cre],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torchvisionlib versions 0.5.0 dated 2024-02-15 and 0.6.0 dated 2025-04-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 2 ++ README.md | 2 +- 4 files changed, 10 insertions(+), 8 deletions(-)
More information about torchvisionlib at CRAN
Permanent link
Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey
graphs from 'R'.
Author: J.J. Allaire [aut],
Peter Ellis [ctb],
Christopher Gandrud [aut, cre],
Kevin Kuo [ctb],
B.W. Lewis [ctb],
Jonathan Owen [ctb],
Kenton Russell [aut],
Jennifer Rogers [ctb],
Charles Sese [ctb],
CJ Yetman [aut]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between networkD3 versions 0.4 dated 2017-03-18 and 0.4.1 dated 2025-04-14
networkD3-0.4.1/networkD3/DESCRIPTION | 20 - networkD3-0.4.1/networkD3/MD5 | 87 +++--- networkD3-0.4.1/networkD3/NAMESPACE | 18 + networkD3-0.4.1/networkD3/NEWS.md | 4 networkD3-0.4.1/networkD3/R/as_treenetdf.R |only networkD3-0.4.1/networkD3/R/chordNetwork.R | 2 networkD3-0.4.1/networkD3/R/data-definitions.R | 6 networkD3-0.4.1/networkD3/R/dendroNetwork.R | 4 networkD3-0.4.1/networkD3/R/forceNetwork.R | 2 networkD3-0.4.1/networkD3/R/networkD3.R | 2 networkD3-0.4.1/networkD3/R/sankeyNetwork.R | 6 networkD3-0.4.1/networkD3/R/simpleNetwork.R | 2 networkD3-0.4.1/networkD3/R/treeNetwork.R |only networkD3-0.4.1/networkD3/R/utils.R | 19 + networkD3-0.4.1/networkD3/README.md | 140 +++++----- networkD3-0.4.1/networkD3/inst/htmlwidgets/chordNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/dendroNetwork.js | 2 networkD3-0.4.1/networkD3/inst/htmlwidgets/dendroNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/diagonalNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/forceNetwork.js | 2 networkD3-0.4.1/networkD3/inst/htmlwidgets/forceNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/lib/d3-4.9.1 |only networkD3-0.4.1/networkD3/inst/htmlwidgets/radialNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/sankeyNetwork.js | 5 networkD3-0.4.1/networkD3/inst/htmlwidgets/sankeyNetwork.yaml | 4 networkD3-0.4.1/networkD3/inst/htmlwidgets/treeNetwork.js |only networkD3-0.4.1/networkD3/inst/htmlwidgets/treeNetwork.yaml |only networkD3-0.4.1/networkD3/man/JS.Rd | 2 networkD3-0.4.1/networkD3/man/MisLinks.Rd | 6 networkD3-0.4.1/networkD3/man/MisNodes.Rd | 8 networkD3-0.4.1/networkD3/man/SchoolsJournals.Rd | 6 networkD3-0.4.1/networkD3/man/as_treenetdf.Node.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.data.frame.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.hclust.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.igraph.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.list.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.phylo.Rd |only networkD3-0.4.1/networkD3/man/as_treenetdf.tbl_graph.Rd |only networkD3-0.4.1/networkD3/man/chordNetwork.Rd | 23 + networkD3-0.4.1/networkD3/man/dendroNetwork.Rd | 26 + networkD3-0.4.1/networkD3/man/diagonalNetwork.Rd | 17 - networkD3-0.4.1/networkD3/man/forceNetwork.Rd | 36 +- networkD3-0.4.1/networkD3/man/igraph_to_networkD3.Rd | 4 networkD3-0.4.1/networkD3/man/networkD3-package.Rd | 2 networkD3-0.4.1/networkD3/man/pkg_installed.Rd |only networkD3-0.4.1/networkD3/man/radialNetwork.Rd | 17 - networkD3-0.4.1/networkD3/man/sankeyNetwork.Rd | 32 +- networkD3-0.4.1/networkD3/man/simpleNetwork.Rd | 20 + networkD3-0.4.1/networkD3/man/treeNetwork-shiny.Rd |only networkD3-0.4.1/networkD3/man/treeNetwork.Rd |only networkD3-0.4/networkD3/inst/htmlwidgets/lib/d3-4.5.0 |only 52 files changed, 344 insertions(+), 200 deletions(-)
Title: Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Description: Provides a genetic algorithm for finding variable
subsets in high dimensional data with high prediction performance. The
genetic algorithm can use ordinary least squares (OLS) regression models or
partial least squares (PLS) regression models to evaluate the prediction
power of variable subsets. By supporting different cross-validation
schemes, the user can fine-tune the tradeoff between speed and quality of
the solution.
Author: David Kepplinger [aut, cre]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between gaselect versions 1.0.22 dated 2023-12-11 and 1.0.23 dated 2025-04-14
DESCRIPTION | 18 +++++++++++------- MD5 | 8 ++++---- configure | 22 +++++++++++----------- configure.ac | 6 +++--- src/autoconfig.win.h | 4 ++-- 5 files changed, 31 insertions(+), 27 deletions(-)
Title: Preprocessing Tools for Clinical Trial Data
Description: A collection of functions to preprocess data and organize
them in a format amenable to use by chevron.
Author: Liming Li [aut] ,
Benoit Falquet [aut] ,
Xiaoli Duan [ctb],
Pawel Rucki [ctb],
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between dunlin versions 0.1.9 dated 2025-02-20 and 0.1.10 dated 2025-04-14
DESCRIPTION | 18 MD5 | 146 ++-- NAMESPACE | 108 +-- NEWS.md | 104 +-- R/assertions.R | 344 +++++----- R/co_relevels.R | 98 +- R/cut_by_group.R | 146 ++-- R/dunlin-package.R | 32 R/explicit_na.R | 164 ++-- R/filter.R | 434 ++++++------- R/join_adsub_adsl.R | 378 +++++------ R/pivot.R | 346 +++++----- R/propagate.R | 156 ++-- R/reformat.R | 487 +++++++------- R/render_safe.R | 230 +++--- R/rules.R | 430 ++++++------ R/unite.R | 112 +-- R/utils.R | 156 ++-- R/zzz.R | 14 README.md | 250 +++---- build/vignette.rds |binary inst/WORDLIST | 12 inst/doc/Reformatting.R | 158 ++-- inst/doc/Reformatting.Rmd | 290 ++++---- inst/doc/Reformatting.html | 1026 +++++++++++++++---------------- inst/extdata/reformat_rules_example.yaml | 4 man/add_whisker.Rd | 48 - man/as.list.rule.Rd | 46 - man/assert_all_tablenames.Rd | 60 - man/assert_one_tablenames.Rd | 48 - man/assert_valid_format.Rd | 62 - man/assert_valid_list_format.Rd | 62 - man/attr_label.Rd | 52 - man/attr_label_df.Rd | 48 - man/co_relevels.Rd | 72 +- man/combine_list_rules.Rd | 92 +- man/combine_rules.Rd | 80 +- man/cut_by_group.Rd | 128 +-- man/dunlin-package.Rd | 72 +- man/get_arg.Rd | 62 - man/get_log.Rd | 86 +- man/h_df_explicit.Rd | 54 - man/h_expand_all_datasets.Rd | 44 - man/join_adsub_adsl.Rd | 156 ++-- man/list2rules.Rd | 54 - man/log_filter.Rd | 114 +-- man/ls_explicit_na.Rd | 114 +-- man/ls_unite.Rd | 62 - man/multi_id_pivot_wider.Rd | 102 +-- man/poly_pivot_wider.Rd | 136 ++-- man/print_log.Rd | 94 +- man/propagate.Rd | 106 +-- man/reformat.Rd | 209 +++--- man/remove_whisker.Rd | 34 - man/render_safe.Rd | 46 - man/rule.Rd | 88 +- man/safe_transformer.Rd | 50 - man/show_whisker.Rd | 34 - tests/testthat.R | 8 tests/testthat/setup-options.R | 40 - tests/testthat/test-assertions.R | 358 +++++----- tests/testthat/test-co_relevels.R | 122 +-- tests/testthat/test-cut_by_group.R | 258 +++---- tests/testthat/test-explicit_na.R | 280 ++++---- tests/testthat/test-filter.R | 666 ++++++++++---------- tests/testthat/test-join_adsub_adsl.R | 348 +++++----- tests/testthat/test-pivot.R | 434 ++++++------- tests/testthat/test-propagate.R | 98 +- tests/testthat/test-reformat.R | 965 +++++++++++++++-------------- tests/testthat/test-render_safe.R | 206 +++--- tests/testthat/test-rules.R | 464 +++++++------- tests/testthat/test-unite.R | 210 +++--- tests/testthat/test-utils.R | 100 +-- vignettes/Reformatting.Rmd | 290 ++++---- 74 files changed, 6545 insertions(+), 6460 deletions(-)
Title: Robust Linear Regression with Compositional Data as Covariates
Description: Robust regression methods for compositional data.
The distribution of the estimates can be approximated with various bootstrap
methods. These bootstrap methods are available for the compositional as well
as for standard robust regression estimates. This allows for direct
comparison between them.
Author: David Kepplinger [aut, cre]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between complmrob versions 0.7.0 dated 2019-09-17 and 0.7.1 dated 2025-04-14
complmrob-0.7.0/complmrob/man/format.perc.Rd |only complmrob-0.7.1/complmrob/DESCRIPTION | 18 ++++-- complmrob-0.7.1/complmrob/MD5 | 25 ++++----- complmrob-0.7.1/complmrob/R/confint-methods.R | 17 +++--- complmrob-0.7.1/complmrob/R/plot-methods.R | 4 - complmrob-0.7.1/complmrob/man/bootStat-methods.Rd | 10 +++ complmrob-0.7.1/complmrob/man/bootcoefs.Rd | 40 ++++++++++----- complmrob-0.7.1/complmrob/man/confint.Rd | 28 +++++++--- complmrob-0.7.1/complmrob/man/isomLR.Rd | 4 - complmrob-0.7.1/complmrob/man/plot.bootcoefs.Rd | 20 +++++-- complmrob-0.7.1/complmrob/man/plot.complmrob.Rd | 20 +++++-- complmrob-0.7.1/complmrob/man/print-methods.Rd | 3 - complmrob-0.7.1/complmrob/man/print.summary.complmrob.Rd | 8 ++- complmrob-0.7.1/complmrob/man/summary-methods.Rd | 6 -- 14 files changed, 129 insertions(+), 74 deletions(-)
Title: Clustering
Description: A tool that implements the clustering algorithms from 'mothur' (Schloss PD et al. (2009) <doi:10.1128/AEM.01541-09>). 'clustur' make use of the cluster() and make.shared() command from 'mothur'. Our cluster() function has five different algorithms implemented: 'OptiClust', 'furthest', 'nearest', 'average', and 'weighted'. 'OptiClust' is an optimized clustering method for Operational Taxonomic Units, and you can learn more here, (Westcott SL, Schloss PD (2017) <doi:10.1128/mspheredirect.00073-17>). The make.shared() command is always applied at the end of the clustering command. This functionality allows us to generate and create clustering and abundance data efficiently.
Author: Gregory Johnson [aut] ,
Sarah Westcott [aut],
Patrick Schloss [aut, cre, cph]
Maintainer: Patrick Schloss <pschloss@umich.edu>
Diff between clustur versions 0.1.1 dated 2024-11-25 and 0.1.2 dated 2025-04-14
clustur-0.1.1/clustur/LICENSE |only clustur-0.1.2/clustur/DESCRIPTION | 10 +-- clustur-0.1.2/clustur/MD5 | 31 ++++------ clustur-0.1.2/clustur/R/cluster.R | 2 clustur-0.1.2/clustur/README.md | 5 - clustur-0.1.2/clustur/build/partial.rdb |binary clustur-0.1.2/clustur/build/vignette.rds |binary clustur-0.1.2/clustur/inst/doc/clustur.Rmd | 1 clustur-0.1.2/clustur/inst/doc/clustur.html | 15 +--- clustur-0.1.2/clustur/src/MothurDependencies/SharedFile.h | 2 clustur-0.1.2/clustur/src/MothurDependencies/SharedFileBuilder.h | 2 clustur-0.1.2/clustur/src/SharedFile.cpp | 4 - clustur-0.1.2/clustur/src/SharedFileBuilder.cpp | 4 - clustur-0.1.2/clustur/src/SharedFileBuilderTestFixture.cpp | 2 clustur-0.1.2/clustur/src/SharedFileTestFixture.cpp | 2 clustur-0.1.2/clustur/src/main.cpp | 17 +++-- clustur-0.1.2/clustur/vignettes/clustur.Rmd | 1 17 files changed, 48 insertions(+), 50 deletions(-)
Title: Graphical Integrated Text Mining Solution
Description: An 'R Commander' plug-in providing an integrated solution to perform
a series of text mining tasks such as importing and cleaning a corpus, and
analyses like terms and documents counts, vocabulary tables, terms
co-occurrences and documents similarity measures, time series analysis,
correspondence analysis and hierarchical clustering. Corpora can be imported
from spreadsheet-like files, directories of raw text files,
as well as from 'Dow Jones Factiva', 'LexisNexis', 'Europresse' and 'Alceste' files.
Author: Milan Bouchet-Valat [aut, cre],
Gilles Bastin [aut]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between RcmdrPlugin.temis versions 0.7.10 dated 2018-06-22 and 0.7.12 dated 2025-04-14
DESCRIPTION | 12 - MD5 | 94 ++++++------ NEWS | 8 + R/common.R | 4 R/corpusCa.R | 2 R/corpusClustering.R | 2 R/freqTerms.R | 2 R/importCorpus.R | 197 +------------------------- R/showCorpusCa.R | 2 R/specificTerms.R | 2 R/termCooc.R | 2 inst/CITATION | 10 - inst/etc/menus.txt | 20 +- inst/po/fr/LC_MESSAGES/R-RcmdrPlugin.temis.mo |binary inst/po/sl/LC_MESSAGES/R-RcmdrPlugin.temis.mo |binary man/caTools.rd | 4 man/cooccurrentTerms.rd | 4 man/corpusCaDlg.rd | 4 man/corpusClustDlg.rd | 4 man/corpusDissimilarity.rd | 2 man/dissimilarityTableDlg.rd | 4 man/freqTermsDlg.rd | 2 man/frequentTerms.rd | 2 man/importCorpusDlg.rd | 27 --- man/plotCorpusCa.rd | 22 +- man/recodeTimeVarDlg.Rd | 4 man/restrictTermsDlg.rd | 2 man/runCorpusCa.rd | 16 +- man/setCorpusVariables.rd | 2 man/showCorpusCa.rd | 2 man/specificTerms.rd | 4 man/specificTermsDlg.rd | 2 man/subsetCorpusByTermsDlg.rd | 2 man/subsetCorpusByVarDlg.rd | 2 man/termCoocDlg.rd | 2 man/termFreqDlg.rd | 4 man/termFrequencies.rd | 2 man/termTimeSeriesDlg.Rd | 2 man/termsDictionary.rd | 2 man/varCrossTableDlg.rd | 4 man/varTableDlg.rd | 4 man/varTimeSeriesDlg.rd | 2 man/vocabularyDlg.rd | 4 man/vocabularyTable.rd | 9 - po/R-RcmdrPlugin.temis.pot | 110 -------------- po/R-fr.po | 122 ---------------- po/R-sl.po | 126 ---------------- tests/RJournal.R | 2 48 files changed, 152 insertions(+), 711 deletions(-)
More information about RcmdrPlugin.temis at CRAN
Permanent link
Title: Search Tools for PDF Files
Description: Includes functions for keyword search of pdf files. There is
also a wrapper that includes searching of all files within a single
directory.
Author: Brandon LeBeau [aut, cre]
Maintainer: Brandon LeBeau <lebebr01+pdfsearch@gmail.com>
Diff between pdfsearch versions 0.3.0 dated 2019-01-09 and 0.4.1 dated 2025-04-14
DESCRIPTION | 14 LICENSE | 4 MD5 | 46 - NAMESPACE | 32 R/directory_search.r | 236 +++--- R/extract_table.r |only R/format_text.r |only R/heading_search.r | 116 +-- R/keyword_search.r | 338 ++++----- R/run_shiny.r | 37 - R/split_pdf.r | 142 ++-- R/util.r | 100 +- README.md | 241 ++---- build/vignette.rds |binary inst/CITATION | 22 inst/doc/intro_to_pdfsearch.R | 126 +-- inst/doc/intro_to_pdfsearch.html | 1167 ++++++++++++++++++--------------- man/convert_tokens.Rd | 87 +- man/extract_tables.Rd |only man/format_text.Rd |only man/heading_search.Rd | 115 +-- man/keyword_directory.Rd | 206 +++-- man/keyword_search.Rd | 199 +++-- man/run_shiny.Rd | 38 - tests/testthat/test_page.r |only tests/testthat/test_remove_equations.r |only tests/testthat/test_structure.r | 182 ++--- 27 files changed, 1811 insertions(+), 1637 deletions(-)
Title: Fast Simple URL Parser
Description: A fast and simple 'URL' parser package for 'R'. This package provides
functions to parse 'URLs' into their components, such as scheme, user, password, host, port,
path, query, and fragment.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between urlparse versions 0.2.0 dated 2025-02-06 and 0.2.1 dated 2025-04-14
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 4 README.md | 73 ++-- man/figures/README-benchmark-1.png |binary man/figures/README-benchmark_encode_large-1.png |binary man/figures/README-benchmark_encode_small-1.png |binary man/figures/README-benchmark_vectorise-1.png |binary src/url_parse.cpp | 66 ++-- tests/testthat/test-url_parse.R | 380 +++++++++++++++--------- 10 files changed, 334 insertions(+), 213 deletions(-)
Title: Create Common TLGs Used in Clinical Trials
Description: Table, Listings, and Graphs (TLG) library for common outputs
used in clinical trials.
Author: Joe Zhu [aut, cre] ,
Daniel Sabanes Bove [aut],
Jana Stoilova [aut],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [aut] ,
Heng Wang [aut],
Francois Collin [aut],
Adrian Waddell [aut],
Pawel Rucki [aut],
Chendi Liao [aut],
Jenni [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between tern versions 0.9.7 dated 2025-01-17 and 0.9.8 dated 2025-04-14
tern-0.9.7/tern/R/abnormal_by_worst_grade_worsen.R |only tern-0.9.7/tern/man/abnormal_by_worst_grade_worsen.Rd |only tern-0.9.7/tern/man/as_factor_keep_attributes.Rd |only tern-0.9.7/tern/man/combine_levels.Rd |only tern-0.9.7/tern/man/fct_collapse_only.Rd |only tern-0.9.7/tern/man/fct_discard.Rd |only tern-0.9.7/tern/man/fct_explicit_na_if.Rd |only tern-0.9.7/tern/man/h_tab_one_biomarker.Rd |only tern-0.9.7/tern/man/ungroup_stats.Rd |only tern-0.9.7/tern/tests/testthat/_snaps/abnormal_by_worst_grade_worsen.md |only tern-0.9.7/tern/tests/testthat/_snaps/estimate_multinom_rsp.md |only tern-0.9.7/tern/tests/testthat/test-abnormal_by_worst_grade_worsen.R |only tern-0.9.7/tern/tests/testthat/test-estimate_multinom_rsp.R |only tern-0.9.8/tern/DESCRIPTION | 36 tern-0.9.8/tern/MD5 | 945 - tern-0.9.8/tern/NAMESPACE | 663 - tern-0.9.8/tern/NEWS.md | 28 tern-0.9.8/tern/R/abnormal.R | 439 tern-0.9.8/tern/R/abnormal_by_baseline.R | 538 - tern-0.9.8/tern/R/abnormal_by_marked.R | 552 - 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tern-0.9.8/tern/R/h_km.R | 2244 ++-- tern-0.9.8/tern/R/h_logistic_regression.R | 1514 +-- tern-0.9.8/tern/R/h_map_for_count_abnormal.R | 306 tern-0.9.8/tern/R/h_pkparam_sort.R | 84 tern-0.9.8/tern/R/h_response_biomarkers_subgroups.R | 394 tern-0.9.8/tern/R/h_response_subgroups.R | 790 - tern-0.9.8/tern/R/h_stack_by_baskets.R | 318 tern-0.9.8/tern/R/h_step.R | 628 - tern-0.9.8/tern/R/h_survival_biomarkers_subgroups.R | 406 tern-0.9.8/tern/R/h_survival_duration_subgroups.R | 968 +- tern-0.9.8/tern/R/imputation_rule.R | 120 tern-0.9.8/tern/R/incidence_rate.R | 536 - tern-0.9.8/tern/R/missing_data.R | 156 tern-0.9.8/tern/R/odds_ratio.R | 746 - tern-0.9.8/tern/R/package.R | 66 tern-0.9.8/tern/R/prop_diff.R | 1411 +- tern-0.9.8/tern/R/prop_diff_test.R | 593 - tern-0.9.8/tern/R/prune_occurrences.R | 480 - tern-0.9.8/tern/R/response_biomarkers_subgroups.R | 564 - tern-0.9.8/tern/R/response_subgroups.R | 968 +- tern-0.9.8/tern/R/riskdiff.R | 388 tern-0.9.8/tern/R/rtables_access.R | 344 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tern-0.9.8/tern/inst/doc/tern_functions_guide.html | 3790 +++---- tern-0.9.8/tern/man/abnormal.Rd | 367 tern-0.9.8/tern/man/abnormal_by_baseline.Rd | 21 tern-0.9.8/tern/man/abnormal_by_marked.Rd | 459 tern-0.9.8/tern/man/abnormal_by_worst_grade.Rd | 340 tern-0.9.8/tern/man/abnormal_lab_worsen_by_baseline.Rd |only tern-0.9.8/tern/man/add_riskdiff.Rd | 112 tern-0.9.8/tern/man/add_rowcounts.Rd | 76 tern-0.9.8/tern/man/aesi_label.Rd | 60 tern-0.9.8/tern/man/afun_riskdiff.Rd | 149 tern-0.9.8/tern/man/afun_selected_stats.Rd | 42 tern-0.9.8/tern/man/analyze_colvars_functions.Rd | 68 tern-0.9.8/tern/man/analyze_functions.Rd | 96 tern-0.9.8/tern/man/analyze_variables.Rd | 832 - tern-0.9.8/tern/man/analyze_vars_in_cols.Rd | 380 tern-0.9.8/tern/man/append_varlabels.Rd | 102 tern-0.9.8/tern/man/apply_auto_formatting.Rd | 50 tern-0.9.8/tern/man/argument_convention.Rd | 2 tern-0.9.8/tern/man/as.rtable.Rd | 78 tern-0.9.8/tern/man/bins_percent_labels.Rd | 46 tern-0.9.8/tern/man/c_label_n.Rd | 70 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tern-0.9.8/tern/man/desctools_binom.Rd | 144 tern-0.9.8/tern/man/df2gg.Rd | 104 tern-0.9.8/tern/man/dot-is_equal_float.Rd | 40 tern-0.9.8/tern/man/empty_vector_if_na.Rd | 44 tern-0.9.8/tern/man/estimate_coef.Rd | 168 tern-0.9.8/tern/man/estimate_multinomial_rsp.Rd | 274 tern-0.9.8/tern/man/estimate_proportion.Rd | 382 tern-0.9.8/tern/man/ex_data.Rd | 118 tern-0.9.8/tern/man/extract_by_name.Rd | 56 tern-0.9.8/tern/man/extract_rsp_biomarkers.Rd | 208 tern-0.9.8/tern/man/extract_rsp_subgroups.Rd | 104 tern-0.9.8/tern/man/extract_survival_biomarkers.Rd | 88 tern-0.9.8/tern/man/extract_survival_subgroups.Rd | 114 tern-0.9.8/tern/man/extreme_format.Rd | 142 tern-0.9.8/tern/man/f_conf_level.Rd | 34 tern-0.9.8/tern/man/f_pval.Rd | 34 tern-0.9.8/tern/man/factor_utils.Rd |only tern-0.9.8/tern/man/fit_coxreg.Rd | 318 tern-0.9.8/tern/man/fit_logistic.Rd | 148 tern-0.9.8/tern/man/fit_rsp_step.Rd | 218 tern-0.9.8/tern/man/fit_survival_step.Rd | 186 tern-0.9.8/tern/man/forest_viewport.Rd | 116 tern-0.9.8/tern/man/format_auto.Rd | 120 tern-0.9.8/tern/man/format_count_fraction_fixed_dp.Rd | 86 tern-0.9.8/tern/man/format_count_fraction_lt10.Rd | 86 tern-0.9.8/tern/man/format_extreme_values.Rd | 86 tern-0.9.8/tern/man/format_extreme_values_ci.Rd | 86 tern-0.9.8/tern/man/format_fraction_fixed_dp.Rd | 88 tern-0.9.8/tern/man/format_fraction_threshold.Rd | 92 tern-0.9.8/tern/man/format_sigfig.Rd | 104 tern-0.9.8/tern/man/format_xx.Rd | 94 tern-0.9.8/tern/man/g_bland_altman.Rd | 62 tern-0.9.8/tern/man/g_ipp.Rd | 204 tern-0.9.8/tern/man/g_km.Rd | 472 tern-0.9.8/tern/man/g_lineplot.Rd | 446 tern-0.9.8/tern/man/g_step.Rd | 198 tern-0.9.8/tern/man/get_covariates.Rd | 38 tern-0.9.8/tern/man/get_smooths.Rd | 56 tern-0.9.8/tern/man/groups_list_to_df.Rd | 54 tern-0.9.8/tern/man/h_adlb_abnormal_by_worst_grade.Rd | 126 tern-0.9.8/tern/man/h_adlb_worsen.Rd | 138 tern-0.9.8/tern/man/h_adsl_adlb_merge_using_worst_flag.Rd | 132 tern-0.9.8/tern/man/h_ancova.Rd | 86 tern-0.9.8/tern/man/h_append_grade_groups.Rd | 134 tern-0.9.8/tern/man/h_biomarkers_subgroups.Rd |only tern-0.9.8/tern/man/h_col_indices.Rd | 44 tern-0.9.8/tern/man/h_count_cumulative.Rd | 118 tern-0.9.8/tern/man/h_cox_regression.Rd | 322 tern-0.9.8/tern/man/h_data_plot.Rd | 104 tern-0.9.8/tern/man/h_decompose_gg.Rd | 116 tern-0.9.8/tern/man/h_format_row.Rd | 80 tern-0.9.8/tern/man/h_g_ipp.Rd | 166 tern-0.9.8/tern/man/h_ggkm.Rd | 200 tern-0.9.8/tern/man/h_glm_count.Rd | 164 tern-0.9.8/tern/man/h_grob_coxph.Rd | 110 tern-0.9.8/tern/man/h_grob_median_surv.Rd | 106 tern-0.9.8/tern/man/h_grob_tbl_at_risk.Rd | 176 tern-0.9.8/tern/man/h_grob_y_annot.Rd | 98 tern-0.9.8/tern/man/h_incidence_rate.Rd | 156 tern-0.9.8/tern/man/h_km_layout.Rd | 142 tern-0.9.8/tern/man/h_logistic_regression.Rd | 438 tern-0.9.8/tern/man/h_map_for_count_abnormal.Rd | 174 tern-0.9.8/tern/man/h_odds_ratio.Rd | 132 tern-0.9.8/tern/man/h_pkparam_sort.Rd | 52 tern-0.9.8/tern/man/h_ppmeans.Rd | 62 tern-0.9.8/tern/man/h_prop_diff.Rd | 310 tern-0.9.8/tern/man/h_prop_diff_test.Rd | 96 tern-0.9.8/tern/man/h_proportions.Rd | 251 tern-0.9.8/tern/man/h_response_biomarkers_subgroups.Rd | 237 tern-0.9.8/tern/man/h_response_subgroups.Rd | 384 tern-0.9.8/tern/man/h_split_by_subgroups.Rd | 104 tern-0.9.8/tern/man/h_split_param.Rd | 102 tern-0.9.8/tern/man/h_stack_by_baskets.Rd | 162 tern-0.9.8/tern/man/h_step.Rd | 226 tern-0.9.8/tern/man/h_survival_biomarkers_subgroups.Rd | 266 tern-0.9.8/tern/man/h_survival_duration_subgroups.Rd | 430 tern-0.9.8/tern/man/h_tbl_coxph_pairwise.Rd | 128 tern-0.9.8/tern/man/h_tbl_median_surv.Rd | 66 tern-0.9.8/tern/man/h_worsen_counter.Rd | 144 tern-0.9.8/tern/man/h_xticks.Rd | 90 tern-0.9.8/tern/man/imputation_rule.Rd | 112 tern-0.9.8/tern/man/incidence_rate.Rd | 416 tern-0.9.8/tern/man/labels_or_names.Rd | 38 tern-0.9.8/tern/man/labels_use_control.Rd | 70 tern-0.9.8/tern/man/logistic_regression_cols.Rd | 48 tern-0.9.8/tern/man/logistic_summary_by_flag.Rd | 60 tern-0.9.8/tern/man/make_names.Rd | 36 tern-0.9.8/tern/man/month2day.Rd | 50 tern-0.9.8/tern/man/muffled_car_anova.Rd | 42 tern-0.9.8/tern/man/n_available.Rd | 36 tern-0.9.8/tern/man/odds_ratio.Rd | 397 tern-0.9.8/tern/man/prop_diff.Rd | 403 tern-0.9.8/tern/man/prop_diff_test.Rd | 305 tern-0.9.8/tern/man/prune_occurrences.Rd | 368 tern-0.9.8/tern/man/range_noinf.Rd | 46 tern-0.9.8/tern/man/reapply_varlabels.Rd | 42 tern-0.9.8/tern/man/response_biomarkers_subgroups.Rd | 206 tern-0.9.8/tern/man/response_subgroups.Rd | 350 tern-0.9.8/tern/man/rtable2gg.Rd | 98 tern-0.9.8/tern/man/rtables_access.Rd | 254 tern-0.9.8/tern/man/s_bland_altman.Rd | 90 tern-0.9.8/tern/man/s_cox_multivariate.Rd | 130 tern-0.9.8/tern/man/split_cols_by_groups.Rd | 246 tern-0.9.8/tern/man/stat_mean_pval.Rd | 62 tern-0.9.8/tern/man/stat_propdiff_ci.Rd | 116 tern-0.9.8/tern/man/strata_normal_quantile.Rd | 88 tern-0.9.8/tern/man/study_arm.Rd | 36 tern-0.9.8/tern/man/summarize_ancova.Rd | 367 tern-0.9.8/tern/man/summarize_change.Rd | 15 tern-0.9.8/tern/man/summarize_colvars.Rd | 10 tern-0.9.8/tern/man/summarize_functions.Rd | 63 tern-0.9.8/tern/man/summarize_glm_count.Rd | 469 tern-0.9.8/tern/man/summarize_logistic.Rd | 198 tern-0.9.8/tern/man/summarize_num_patients.Rd | 491 - tern-0.9.8/tern/man/summarize_patients_exposure_in_cols.Rd | 496 - tern-0.9.8/tern/man/survival_biomarkers_subgroups.Rd | 320 tern-0.9.8/tern/man/survival_coxph_pairwise.Rd | 20 tern-0.9.8/tern/man/survival_duration_subgroups.Rd | 368 tern-0.9.8/tern/man/survival_time.Rd | 354 tern-0.9.8/tern/man/survival_timepoint.Rd | 48 tern-0.9.8/tern/man/tern-package.Rd | 86 tern-0.9.8/tern/man/tidy.glm.Rd | 128 tern-0.9.8/tern/man/tidy.step.Rd | 84 tern-0.9.8/tern/man/tidy_coxreg.Rd | 226 tern-0.9.8/tern/man/to_n.Rd | 50 tern-0.9.8/tern/man/to_string_matrix.Rd | 116 tern-0.9.8/tern/man/try_car_anova.Rd | 92 tern-0.9.8/tern/man/univariate.Rd | 60 tern-0.9.8/tern/man/unlist_and_blank_na.Rd | 38 tern-0.9.8/tern/man/update_weights_strat_wilson.Rd | 108 tern-0.9.8/tern/man/util_handling_additional_fun_params.Rd | 90 tern-0.9.8/tern/man/utils_split_funs.Rd | 214 tern-0.9.8/tern/tests/testthat.R | 6 tern-0.9.8/tern/tests/testthat/Rplots.pdf |binary tern-0.9.8/tern/tests/testthat/_snaps/abnormal_lab_worsen_by_baseline.md |only tern-0.9.8/tern/tests/testthat/_snaps/analyze_variables.md | 100 tern-0.9.8/tern/tests/testthat/_snaps/bland-altman/g_bland_altman.svg | 206 tern-0.9.8/tern/tests/testthat/_snaps/compare_variables.md | 5 tern-0.9.8/tern/tests/testthat/_snaps/count_cumulative.md | 27 tern-0.9.8/tern/tests/testthat/_snaps/count_missed_doses.md | 18 tern-0.9.8/tern/tests/testthat/_snaps/count_occurrences.md | 26 tern-0.9.8/tern/tests/testthat/_snaps/count_occurrences_by_grade.md | 77 tern-0.9.8/tern/tests/testthat/_snaps/count_patients_with_flags.md | 6 tern-0.9.8/tern/tests/testthat/_snaps/coxph.md | 2 tern-0.9.8/tern/tests/testthat/_snaps/decorate_grob/deco_grob_text_wrap.svg | 488 - tern-0.9.8/tern/tests/testthat/_snaps/estimate_multinomial_rsp.md |only tern-0.9.8/tern/tests/testthat/_snaps/estimate_proportion.md | 21 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest.svg | 260 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_custom_1.svg | 142 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_custom_2.svg | 158 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_custom_3.svg | 150 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_or.svg | 204 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_plot_only.svg | 114 tern-0.9.8/tern/tests/testthat/_snaps/g_forest/g_forest_table_only.svg | 178 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_at_risk_title.svg | 556 - tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_ci_ribbon.svg | 568 - tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim.svg | 316 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_crop_ylim_failure.svg | 316 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_custom.svg | 436 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_custom_ylim.svg | 308 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_default.svg | 556 - tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_eq_lbls.svg | 346 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_plot_only.svg | 444 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_ref_group_coxph.svg | 600 - tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_table_only.svg | 126 tern-0.9.8/tern/tests/testthat/_snaps/g_km/g_km_title_footer.svg | 560 - tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot.svg | 298 tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_cohorts.svg | 592 - tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_facets.svg | 1826 +-- tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_factor_levels.svg | 590 - tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_plot_only.svg | 298 tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_table_only.svg | 304 tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_w_stats.svg | 594 - tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_xlim_ylim.svg | 242 tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_xticks.svg | 288 tern-0.9.8/tern/tests/testthat/_snaps/g_lineplot/g_lineplot_xticks_by.svg | 300 tern-0.9.8/tern/tests/testthat/_snaps/g_step/g_step.svg | 158 tern-0.9.8/tern/tests/testthat/_snaps/g_step/g_step_custom.svg | 162 tern-0.9.8/tern/tests/testthat/_snaps/g_waterfall/g_waterfall.svg | 132 tern-0.9.8/tern/tests/testthat/_snaps/g_waterfall/g_waterfall_decorated.svg | 168 tern-0.9.8/tern/tests/testthat/_snaps/h_biomarkers_subgroups.md |only tern-0.9.8/tern/tests/testthat/_snaps/h_response_biomarkers_subgroups.md | 10 tern-0.9.8/tern/tests/testthat/_snaps/h_survival_biomarkers_subgroups.md | 10 tern-0.9.8/tern/tests/testthat/_snaps/incidence_rate.md | 14 tern-0.9.8/tern/tests/testthat/_snaps/prop_diff.md | 12 tern-0.9.8/tern/tests/testthat/_snaps/response_subgroups.md | 13 tern-0.9.8/tern/tests/testthat/_snaps/summarize_ancova.md | 6 tern-0.9.8/tern/tests/testthat/_snaps/summarize_change.md | 36 tern-0.9.8/tern/tests/testthat/_snaps/summarize_glm_count.md | 12 tern-0.9.8/tern/tests/testthat/_snaps/summarize_num_patients.md | 22 tern-0.9.8/tern/tests/testthat/_snaps/survival_coxph_pairwise.md | 12 tern-0.9.8/tern/tests/testthat/_snaps/survival_duration_subgroups.md | 13 tern-0.9.8/tern/tests/testthat/_snaps/survival_time.md | 52 tern-0.9.8/tern/tests/testthat/_snaps/utils_default_stats_formats_labels.md | 191 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/df2gg_cw.svg | 112 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/df2gg_default.svg | 112 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/df2gg_fs.svg | 114 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/rtable2gg_colsplits.svg | 180 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/rtable2gg_cw.svg | 160 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/rtable2gg_default.svg | 160 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/rtable2gg_fs.svg | 160 tern-0.9.8/tern/tests/testthat/_snaps/utils_ggplot/rtable2gg_lblpad.svg | 160 tern-0.9.8/tern/tests/testthat/setup-options.R | 40 tern-0.9.8/tern/tests/testthat/setup.R | 80 tern-0.9.8/tern/tests/testthat/test-abnormal.R | 374 tern-0.9.8/tern/tests/testthat/test-abnormal_by_baseline.R | 284 tern-0.9.8/tern/tests/testthat/test-abnormal_by_marked.R | 510 - tern-0.9.8/tern/tests/testthat/test-abnormal_by_worst_grade.R | 190 tern-0.9.8/tern/tests/testthat/test-abnormal_lab_worsen_by_baseline.R |only tern-0.9.8/tern/tests/testthat/test-analyze_variables.R | 1307 +- tern-0.9.8/tern/tests/testthat/test-analyze_vars_in_cols.R | 846 - tern-0.9.8/tern/tests/testthat/test-bland-altman.R | 208 tern-0.9.8/tern/tests/testthat/test-combination_function.R | 140 tern-0.9.8/tern/tests/testthat/test-compare_variables.R | 252 tern-0.9.8/tern/tests/testthat/test-control_logistic.R | 28 tern-0.9.8/tern/tests/testthat/test-control_step.R | 24 tern-0.9.8/tern/tests/testthat/test-control_survival.R | 86 tern-0.9.8/tern/tests/testthat/test-count_cumulative.R | 316 tern-0.9.8/tern/tests/testthat/test-count_missed_doses.R | 141 tern-0.9.8/tern/tests/testthat/test-count_occurrences.R | 578 - tern-0.9.8/tern/tests/testthat/test-count_occurrences_by_grade.R | 987 +- tern-0.9.8/tern/tests/testthat/test-count_patients_events_in_cols.R | 152 tern-0.9.8/tern/tests/testthat/test-count_patients_with_event.R | 408 tern-0.9.8/tern/tests/testthat/test-count_patients_with_flags.R | 886 - tern-0.9.8/tern/tests/testthat/test-count_values.R | 324 tern-0.9.8/tern/tests/testthat/test-coxph.R | 222 tern-0.9.8/tern/tests/testthat/test-coxreg.R | 1172 +- tern-0.9.8/tern/tests/testthat/test-decorate_grob.R | 406 tern-0.9.8/tern/tests/testthat/test-desctools_binom_diff.R | 128 tern-0.9.8/tern/tests/testthat/test-df_explicit_na.R | 184 tern-0.9.8/tern/tests/testthat/test-estimate_multinomial_rsp.R |only tern-0.9.8/tern/tests/testthat/test-estimate_proportion.R | 725 - tern-0.9.8/tern/tests/testthat/test-fit_rsp_step.R | 228 tern-0.9.8/tern/tests/testthat/test-fit_survival_step.R | 184 tern-0.9.8/tern/tests/testthat/test-formatting_functions.R | 506 - tern-0.9.8/tern/tests/testthat/test-g_forest.R | 354 tern-0.9.8/tern/tests/testthat/test-g_km.R | 406 tern-0.9.8/tern/tests/testthat/test-g_lineplot.R | 502 - tern-0.9.8/tern/tests/testthat/test-g_step.R | 212 tern-0.9.8/tern/tests/testthat/test-g_waterfall.R | 60 tern-0.9.8/tern/tests/testthat/test-h_adsl_adlb_merge_using_worst_flag.R | 138 tern-0.9.8/tern/tests/testthat/test-h_biomarkers_subgroups.R |only tern-0.9.8/tern/tests/testthat/test-h_format_row.R | 40 tern-0.9.8/tern/tests/testthat/test-h_incidence_rate.R | 76 tern-0.9.8/tern/tests/testthat/test-h_km.R | 404 tern-0.9.8/tern/tests/testthat/test-h_logistic_regression.R | 936 - tern-0.9.8/tern/tests/testthat/test-h_map_for_count_abnormal.R | 368 tern-0.9.8/tern/tests/testthat/test-h_pkparam_sort.R | 36 tern-0.9.8/tern/tests/testthat/test-h_response_biomarkers_subgroups.R | 214 tern-0.9.8/tern/tests/testthat/test-h_response_subgroups.R | 450 tern-0.9.8/tern/tests/testthat/test-h_stack_by_baskets.R | 156 tern-0.9.8/tern/tests/testthat/test-h_step.R | 1024 +- tern-0.9.8/tern/tests/testthat/test-h_survival_biomarkers_subgroups.R | 180 tern-0.9.8/tern/tests/testthat/test-h_survival_duration_subgroups.R | 590 - tern-0.9.8/tern/tests/testthat/test-imputation_rule.R | 88 tern-0.9.8/tern/tests/testthat/test-incidence_rate.R | 302 tern-0.9.8/tern/tests/testthat/test-individual_patient_plot.R | 140 tern-0.9.8/tern/tests/testthat/test-logistic_regression.R | 554 - tern-0.9.8/tern/tests/testthat/test-make_afun.R | 534 - tern-0.9.8/tern/tests/testthat/test-odds_ratio.R | 496 - tern-0.9.8/tern/tests/testthat/test-prop_diff.R | 716 - tern-0.9.8/tern/tests/testthat/test-prune_occurrences.R | 330 tern-0.9.8/tern/tests/testthat/test-response_biomarkers_subgroups.R | 332 tern-0.9.8/tern/tests/testthat/test-response_subgroups.R | 678 - tern-0.9.8/tern/tests/testthat/test-rtables_access.R | 222 tern-0.9.8/tern/tests/testthat/test-score_occurrences.R | 314 tern-0.9.8/tern/tests/testthat/test-split_cols_by_groups.R | 370 tern-0.9.8/tern/tests/testthat/test-stat.R | 596 - tern-0.9.8/tern/tests/testthat/test-summarize_ancova.R | 464 tern-0.9.8/tern/tests/testthat/test-summarize_change.R | 274 tern-0.9.8/tern/tests/testthat/test-summarize_colvars.R | 128 tern-0.9.8/tern/tests/testthat/test-summarize_coxreg.R | 588 - tern-0.9.8/tern/tests/testthat/test-summarize_glm_count.R | 942 - tern-0.9.8/tern/tests/testthat/test-summarize_num_patients.R | 650 - tern-0.9.8/tern/tests/testthat/test-summarize_patients_exposure_in_cols.R | 335 tern-0.9.8/tern/tests/testthat/test-survival_biomarkers_subgroups.R | 358 tern-0.9.8/tern/tests/testthat/test-survival_coxph_pairwise.R | 446 tern-0.9.8/tern/tests/testthat/test-survival_duration_subgroups.R | 592 - tern-0.9.8/tern/tests/testthat/test-survival_time.R | 377 tern-0.9.8/tern/tests/testthat/test-survival_timepoint.R | 478 - tern-0.9.8/tern/tests/testthat/test-test_proportion_diff.R | 424 tern-0.9.8/tern/tests/testthat/test-utils.R | 1430 +- tern-0.9.8/tern/tests/testthat/test-utils_checkmate.R | 300 tern-0.9.8/tern/tests/testthat/test-utils_default_stats_formats_labels.R | 528 - tern-0.9.8/tern/tests/testthat/test-utils_factor.R | 368 tern-0.9.8/tern/tests/testthat/test-utils_ggplot.R | 136 tern-0.9.8/tern/tests/testthat/test-utils_grid.R | 106 tern-0.9.8/tern/tests/testthat/test-utils_rtables.R | 590 - tern-0.9.8/tern/tests/testthat/test-utils_split_fun.R | 282 tern-0.9.8/tern/vignettes/missing_values.Rmd | 280 tern-0.9.8/tern/vignettes/tables.Rmd | 938 - tern-0.9.8/tern/vignettes/tern.Rmd | 344 tern-0.9.8/tern/vignettes/tern_formats.Rmd | 556 - tern-0.9.8/tern/vignettes/tern_functions_guide.Rmd | 286 485 files changed, 80382 insertions(+), 78381 deletions(-)
Title: Simulate Forensic DNA Mixtures
Description: Mixed DNA profiles can be sampled according to models for probabilistic genotyping. Peak height variability is modelled using a log normal distribution or a gamma distribution. Sample contributors may be related according to a pedigree.
Author: Maarten Kruijver [aut, cre]
Maintainer: Maarten Kruijver <maarten.kruijver@esr.cri.nz>
Diff between simDNAmixtures versions 1.0.1 dated 2022-05-04 and 1.1.2 dated 2025-04-14
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More information about simDNAmixtures at CRAN
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Title: Measures of Network Segregation and Homophily
Description: Segregation is a network-level property such that edges between
predefined groups of vertices are relatively less likely. Network homophily
is a individual-level tendency to form relations with people who are similar
on some attribute (e.g. gender, music taste, social status, etc.). In general
homophily leads to segregation, but segregation might arise without
homophily. This package implements descriptive indices measuring
homophily/segregation. It is a computational companion
to Bojanowski & Corten (2014) <doi:10.1016/j.socnet.2014.04.001>.
Author: Michal Bojanowski [aut, cre]
Maintainer: Michal Bojanowski <michal2992@gmail.com>
Diff between netseg versions 1.0-2 dated 2023-07-01 and 1.0-3 dated 2025-04-14
DESCRIPTION | 10 ++++---- MD5 | 48 +++++++++++++++++++++--------------------- NAMESPACE | 4 +-- NEWS.md | 24 ++++++++++++++++++++- R/coleman.R | 6 ++--- R/ei.R | 6 +++-- R/freeman.R | 5 ++-- R/mixingm.R | 14 ++++++------ R/smi.R | 7 ++++-- R/ssi.R | 16 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/netseg.html | 43 +++++++++++++++++++++---------------- man/coleman.Rd | 4 +-- man/ei.Rd | 4 +-- man/freeman.Rd | 2 - man/mixingm.Rd | 6 ++--- man/netseg-package.Rd | 1 man/smi.Rd | 2 - man/symmetrize.Rd | 6 ++--- tests/testthat/test-coleman.R | 2 - tests/testthat/test-freeman.R | 2 - tests/testthat/test-mixingm.R | 8 +++---- tests/testthat/test-orwg.R | 2 - tests/testthat/test-smi.R | 2 - 25 files changed, 128 insertions(+), 96 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 2.6.1 dated 2025-03-11 and 2.6.2 dated 2025-04-14
DESCRIPTION | 11 ++-- MD5 | 42 ++++++++-------- NEWS.md | 12 ++++ R/complete_dates.R | 14 +---- R/dplyr.R | 10 +-- R/incidence.R | 94 +++++++++++++++++++------------------ R/keep.R | 79 ++++++++++--------------------- R/palettes.R | 2 R/plot.R | 14 ++--- R/rbind.R | 2 R/regroup.R | 4 - R/split.R | 4 - R/utils.R | 20 ++++++- README.md | 33 +++--------- inst/doc/incidence2.R | 1 inst/doc/incidence2.Rmd | 1 inst/doc/incidence2.html | 42 ++++++++-------- tests/testthat/_snaps/incidence.md | 23 +++++++++ tests/testthat/_snaps/keep.md | 16 ------ tests/testthat/test-incidence.R | 6 ++ tests/testthat/test-keep.R | 17 +++++- vignettes/incidence2.Rmd | 1 22 files changed, 230 insertions(+), 218 deletions(-)
Title: Enterprise Streamlined 'shiny' Application Framework Using
'bs4Dash'
Description: A framework for building enterprise, scalable and UI-standardized 'shiny' applications.
It brings enhanced features such as 'bootstrap' v4 <https://getbootstrap.com/docs/4.0/getting-started/introduction/>,
additional and enhanced 'shiny' modules, customizable UI features, as well as an enhanced application file
organization paradigm. This update allows developers to harness the ability to build powerful applications and
enriches the 'shiny' developers' experience when building and maintaining applications.
Author: Mohammed Ali [aut, cre],
Constance Brett [ctb],
Aggregate Genius Inc [spn]
Maintainer: Mohammed Ali <mohammed@aggregate-genius.com>
Diff between periscope2 versions 0.2.3 dated 2024-03-06 and 0.2.4 dated 2025-04-14
DESCRIPTION | 8 MD5 | 62 ++-- NEWS.md | 10 R/logger.R | 12 R/periscope2.R | 4 R/ui_helpers.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/announcement-module.R | 16 - inst/doc/announcement-module.html | 12 inst/doc/announcement_addin.html | 24 - inst/doc/applicationReset-module.R | 22 - inst/doc/applicationReset-module.html | 18 - inst/doc/downloadFile-module.R | 62 ++-- inst/doc/downloadFile-module.html | 14 - inst/doc/downloadablePlot-module.R | 34 +- inst/doc/downloadablePlot-module.html | 10 inst/doc/downloadableTable-module.R | 96 +++---- inst/doc/downloadableTable-module.html | 12 inst/doc/logViewer-module.R | 16 - inst/doc/logViewer-module.html | 10 inst/doc/migrate_to_v0_2_0.html | 10 inst/doc/new-application.R | 428 ++++++++++++++++---------------- inst/doc/new-application.Rmd | 4 inst/doc/new-application.html | 38 +- inst/doc/themeBuilder_addin.html | 22 - man/periscope2.Rd | 20 + man/set_app_parameters.Rd | 2 tests/testthat/_snaps/ui_functions.md | 14 - tests/testthat/test_downloadable_plot.R | 2 tests/testthat/test_ui_functions.R | 26 + vignettes/new-application.Rmd | 4 32 files changed, 521 insertions(+), 495 deletions(-)
Title: Fitting Mixed (Inflated and Adjusted) Distributions
Description: This is an add-on package to 'gamlss'. The purpose of this package is to allow users to fit GAMLSS (Generalised Additive Models for Location Scale and Shape) models when the response variable is defined either in the intervals [0,1), (0,1] and [0,1] (inflated at zero and/or one distributions), or in the positive real line including zero (zero-adjusted distributions). The mass points at zero and/or one are treated as extra parameters with the possibility to include a linear predictor for both. The package also allows transformed or truncated distributions from the GAMLSS family to be used for the continuous part of the distribution. Standard methods and GAMLSS diagnostics can be used with the resulting fitted object.
Author: Marco Enea [aut, cre, cph],
Mikis Stasinopoulos [aut],
Bob Rigby [aut],
Abu Hossain [aut]
Maintainer: Marco Enea <marco.enea@unipa.it>
Diff between gamlss.inf versions 1.0-1 dated 2019-03-12 and 1.0-2 dated 2025-04-14
DESCRIPTION | 10 +- MD5 | 28 +++--- NEWS | 26 +++--- man/centiles.Inf0to1.Rd | 6 - man/gamlss.inf-package.Rd | 180 ++++++++++++++++++++--------------------- man/gamlssInf0to1.Rd | 10 +- man/gamlssZadj.Rd | 12 +- man/gen.Inf0to1.Rd | 186 +++++++++++++++++++++---------------------- man/gen.Zadj.Rd | 148 +++++++++++++++++----------------- man/predict.gamlssZadj.Rd | 166 +++++++++++++++++++------------------- man/predict.gamlssinf0to1.Rd | 150 +++++++++++++++++----------------- man/sda.Rd | 92 ++++++++++----------- man/summary.gamlssinf0to1.Rd | 156 ++++++++++++++++++------------------ man/term.plotInf0to1.Rd | 128 ++++++++++++++--------------- man/term.plotZadj.Rd | 160 ++++++++++++++++++------------------ 15 files changed, 731 insertions(+), 727 deletions(-)
Title: Methods for High-Dimensional Repeated Measures Data
Description: A toolkit for the analysis of high-dimensional repeated measurements, providing functions
for outlier detection, differential expression analysis, gene-set tests, and binary random data generation.
Author: Klaus Jung [aut, cre],
Jochen Kruppa [aut],
Sergej Ruff [aut]
Maintainer: Klaus Jung <klaus.jung@tiho-hannover.de>
Diff between RepeatedHighDim versions 2.3.0 dated 2024-04-25 and 2.4.0 dated 2025-04-14
RepeatedHighDim-2.3.0/RepeatedHighDim/man/TestStatSP.Rd |only RepeatedHighDim-2.3.0/RepeatedHighDim/man/TestStatSimple.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/DESCRIPTION | 15 RepeatedHighDim-2.4.0/RepeatedHighDim/MD5 | 58 - RepeatedHighDim-2.4.0/RepeatedHighDim/NAMESPACE | 14 RepeatedHighDim-2.4.0/RepeatedHighDim/R/GA_diagplot.R | 135 +- RepeatedHighDim-2.4.0/RepeatedHighDim/R/RepeatedHighDim-package.R | 222 ++-- RepeatedHighDim-2.4.0/RepeatedHighDim/R/TestStatSP.R | 3 RepeatedHighDim-2.4.0/RepeatedHighDim/R/TestStatSimple.R | 3 RepeatedHighDim-2.4.0/RepeatedHighDim/R/bag.R | 370 ++++---- RepeatedHighDim-2.4.0/RepeatedHighDim/R/data.R |only RepeatedHighDim-2.4.0/RepeatedHighDim/R/depmed.R | 142 +-- RepeatedHighDim-2.4.0/RepeatedHighDim/R/gem.R | 232 ++--- RepeatedHighDim-2.4.0/RepeatedHighDim/R/hldepth.R | 180 +-- RepeatedHighDim-2.4.0/RepeatedHighDim/R/iter_matrix.R | 20 RepeatedHighDim-2.4.0/RepeatedHighDim/R/loop.R | 244 ++--- RepeatedHighDim-2.4.0/RepeatedHighDim/R/netRNA.R | 459 ++++------ RepeatedHighDim-2.4.0/RepeatedHighDim/R/scTC_bpplot.R |only RepeatedHighDim-2.4.0/RepeatedHighDim/R/scTC_trim_effect.R |only RepeatedHighDim-2.4.0/RepeatedHighDim/R/scTrimClust.R |only RepeatedHighDim-2.4.0/RepeatedHighDim/R/sysdata.rda |only RepeatedHighDim-2.4.0/RepeatedHighDim/R/zzz.R |only RepeatedHighDim-2.4.0/RepeatedHighDim/README.md |only RepeatedHighDim-2.4.0/RepeatedHighDim/build/partial.rdb |binary RepeatedHighDim-2.4.0/RepeatedHighDim/man/GA_diagplot.Rd | 3 RepeatedHighDim-2.4.0/RepeatedHighDim/man/RepeatedHighDim.Rd | 11 RepeatedHighDim-2.4.0/RepeatedHighDim/man/covid_markers.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/iter_matrix.Rd | 2 RepeatedHighDim-2.4.0/RepeatedHighDim/man/netRNA.Rd | 11 RepeatedHighDim-2.4.0/RepeatedHighDim/man/robust_covid_data.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/robust_covid_markers.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/robust_covid_markers_02trim.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/robust_covid_markers_03trim.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_bpplot.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_eff_clr.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_eff_clr_robust.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_eff_log.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_eff_log_robust.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTC_trim_effect.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/scTrimClust.Rd |only RepeatedHighDim-2.4.0/RepeatedHighDim/man/seurat_obj.Rd |only 41 files changed, 1086 insertions(+), 1038 deletions(-)
More information about RepeatedHighDim at CRAN
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Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 0.3.1 dated 2025-03-16 and 0.3.2 dated 2025-04-14
DESCRIPTION | 6 MD5 | 120 NEWS.md | 9 R/checks.R | 82 R/mockOmopSketch.R | 21 R/plotConceptSetCounts.R | 60 R/plotInObservation.R | 53 R/plotObservationPeriod.R | 39 R/plotRecordCount.R | 42 R/reexport-omopgenerics.R | 1 R/summariseClinicalRecords.R | 31 R/summariseConceptCounts.R | 1 R/summariseConceptIdCounts.R | 36 R/summariseConceptSetCounts.R | 6 R/summariseInObservation.R | 229 + R/summariseInternal.R | 96 R/summariseMissingData.R | 116 R/summariseObservationPeriod.R | 73 R/summariseOmopSnapshot.R | 36 R/summariseRecordCount.R | 7 R/tableClinicalRecords.R | 9 R/tableConceptIdCounts.R | 24 R/tableMissingData.R | 10 R/tableObservationPeriod.R | 13 R/tableOmopSnapshot.R | 9 R/utilities.R | 5 inst/doc/characterisation.R | 104 inst/doc/characterisation.Rmd | 104 inst/doc/characterisation.html | 3036 ++++++++++++----------- inst/doc/summarise_clinical_tables_records.R | 146 - inst/doc/summarise_clinical_tables_records.Rmd | 142 - inst/doc/summarise_clinical_tables_records.html | 343 +- inst/doc/summarise_concept_set_counts.R | 94 inst/doc/summarise_concept_set_counts.Rmd | 94 inst/doc/summarise_concept_set_counts.html | 99 inst/doc/summarise_observation_period.R | 89 inst/doc/summarise_observation_period.Rmd | 91 inst/doc/summarise_observation_period.html | 326 +- man/mockOmopSketch.Rd | 2 man/plotConceptSetCounts.Rd | 2 man/plotInObservation.Rd | 2 man/plotRecordCount.Rd | 2 man/summariseConceptSetCounts.Rd | 1 man/summariseInObservation.Rd | 9 man/summariseObservationPeriod.Rd | 3 man/summariseRecordCount.Rd | 2 tests/testthat/setup.R | 50 tests/testthat/test-plotInObservation.R | 11 tests/testthat/test-restrictStudyPeriod.R | 3 tests/testthat/test-summariseClinicalRecords.R | 228 + tests/testthat/test-summariseConceptIdCounts.R | 161 - tests/testthat/test-summariseConceptSetCounts.R | 934 +++---- tests/testthat/test-summariseInObservation.R | 257 + tests/testthat/test-summariseMissingData.R | 405 ++- tests/testthat/test-summariseObservationPeriod.R | 285 +- tests/testthat/test-summariseOmopSnapshot.R | 12 tests/testthat/test-summariseRecordCount.R | 237 - vignettes/characterisation.Rmd | 104 vignettes/summarise_clinical_tables_records.Rmd | 142 - vignettes/summarise_concept_set_counts.Rmd | 94 vignettes/summarise_observation_period.Rmd | 91 61 files changed, 5053 insertions(+), 3786 deletions(-)
Title: Neo-Normal Distributions Family for Markov Chain Monte Carlo
(MCMC) Models in 'JAGS'
Description: A 'JAGS' extension module provides neo-normal distributions
family including MSNBurr, MSNBurr-IIa, GMSNBurr, Lunetta Exponential Power,
Fernandez-Steel Skew t, Fernandez-Steel Skew Normal, Fernandez-Osiewalski-Steel
Skew Exponential Power, Jones Skew Exponential Power.
References:
Choir, A. S. (2020). "The New Neo-Normal Distributions and Their Properties".Unpublished Dissertation.
Denwood, M.J. (2016) <doi:10.18637/jss.v071.i09>.
Fernandez, C., Osiewalski, J., & Steel, M. F. (1995) <doi:10.1080/01621459.1995.10476637>.
Fernandez, C., & Steel, M. F. (1998) <doi:10.1080/01621459.1998.10474117>.
Iriawan, N. (2000). "Computationally Intensive Approaches to Inference in NeoNormal Linear Models".Unpublished Dissertation.
Mineo, A., & Ruggieri, M. (2005) <doi:10.18637/jss.v012.i04>.
Rigby, R. A., & Stasinopoulos, D. M. (2005) <doi:10.1111/j.1467-9876.2005.00510.x>.
Lunetta, G. (1963). "Di una Generalizzazione dello Schema della Curva Normale".
Ri [...truncated...]
Author: Achmad Syahrul Choir [aut, cre],
Resi Ramadani [aut],
Nur Iriawan [aut],
S Sifa'ul Khusna Malikhatul Mutmainah [ctb],
Matthew Denwood [cph],
Martyn Plummer [cph]
Maintainer: Achmad Syahrul Choir <madsyair@stis.ac.id>
Diff between neojags versions 0.1.5 dated 2024-10-10 and 0.1.6 dated 2025-04-14
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- build/vignette.rds |binary configure.ac | 6 +++--- inst/WORDLIST | 11 ++--------- inst/doc/vignettes.html | 20 ++++++++++---------- tests/moduletargets.Rsave |only tests/spelling.R | 6 +++++- tests/testthat/test-basic_example.R | 3 ++- 9 files changed, 33 insertions(+), 34 deletions(-)
Title: Coalescent-Based Simulation of Ecological Communities
Description: Coalescent-Based Simulation of Ecological Communities as proposed
by Munoz et al. (2018) <doi:10.1111/2041-210X.12918>. The package includes
a tool for estimating parameters of community assembly by using Approximate
Bayesian Computation.
Author: Francois Munoz [aut, cre],
Matthias Grenie [aut],
Pierre Denelle [aut],
Adrien Taudiere [ctb],
Fabien Laroche [ctb],
Caroline Tucker [ctb],
Cyrille Violle [ctb]
Maintainer: Francois Munoz <francois.munoz@hotmail.fr>
Diff between ecolottery versions 1.0.0 dated 2017-07-03 and 1.0.1 dated 2025-04-14
DESCRIPTION | 11 MD5 | 20 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 28 - inst/doc/Barro_Colorado.R | 284 +++++------ inst/doc/Barro_Colorado.html | 651 +++++++++++++++++++------- inst/doc/coalesc_vignette.R | 62 +- inst/doc/coalesc_vignette.html | 1019 +++++++++++++++++++++++++++++------------ man/coalesc_abc.Rd | 10 man/plot_comm.Rd | 2 11 files changed, 1436 insertions(+), 651 deletions(-)
Title: Multi-Armed Qini
Description: Policy evaluation using generalized Qini curves: Evaluate data-driven treatment
targeting rules for one or more treatment arms over different budget
constraints in experimental or observational settings under unconfoundedness.
Author: Erik Sverdrup [aut, cre],
Han Wu [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between maq versions 0.5.0 dated 2024-11-14 and 0.6.0 dated 2025-04-14
DESCRIPTION | 6 ++--- MD5 | 17 ++++++++-------- NAMESPACE | 1 R/get_aipw_scores.R | 2 - R/maq.R | 51 ++++++++++++++++++++++++++++++++++++++++++++++--- R/plot.R | 10 ++++----- man/get_aipw_scores.Rd | 2 - man/maq.Rd | 6 ++--- man/plot.maq.Rd | 10 ++++----- man/scale_maq.Rd |only 10 files changed, 76 insertions(+), 29 deletions(-)
Title: Collection of Helper Functions
Description: Provides a collection of lightweight helper functions (imps) both
for interactive use and for inclusion within other packages. These include
functions for minimal input assertions, visualising colour palettes,
quoting user input, searching rows of a data frame and capturing string
tokens.
Author: Tim Taylor [aut, cre, cph] ,
R Core Team [cph] ,
Toby Hocking [cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ympes versions 1.8.0 dated 2025-02-05 and 1.9.0 dated 2025-04-14
DESCRIPTION | 6 ++--- MD5 | 12 +++++------ NEWS.md | 7 ++++++ R/assert.R | 16 ++++++--------- build/vignette.rds |binary inst/doc/ympes.html | 54 +++++++++++++++++++++++++++------------------------- man/assertions.Rd | 13 +++++------- 7 files changed, 58 insertions(+), 50 deletions(-)
Title: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal
Surface
Description: Provides functions to run statistical analyses on
surface-based neuroimaging data, computing measures including cortical
thickness and surface area of the whole-brain and of the hippocampi.
It can make use of 'FreeSurfer', 'fMRIprep', 'HCP' and 'CAT12' preprocessed
datasets and 'HippUnfold' hippocampal segmentation outputs for a given
sample by restructuring the data values into a single file. The single
file can then be used by the package for analyses independently from
its base dataset and without need for its access.
Author: Junhong Yu [aut] ,
Charly Billaud [aut, cre]
Maintainer: Charly Billaud <charly.billaud@ntu.edu.sg>
Diff between VertexWiseR versions 1.3.0 dated 2025-03-18 and 1.3.1 dated 2025-04-14
DESCRIPTION | 10 ++-- MD5 | 26 ++++++------ NEWS.md | 16 ++++++- R/VWRfirstrun.R | 68 ++++++++++++++++----------------- R/otherfunc.R | 22 ++++++---- R/plot_surf.R | 7 +-- R/vertTFCE.R | 14 +++--- inst/doc/VertexWiseR_Example_2.html | 23 +++++++---- inst/python/brainstat.stats.SLM_VWR.py | 20 --------- man/decode_surf_data.Rd | 2 man/plot_surf.Rd | 3 + man/surf_to_vol.Rd | 2 vignettes/FINK_tstatmaps.png |binary vignettes/VertexWiseR_Example_2.Rmd | 22 +++++----- 14 files changed, 125 insertions(+), 110 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph] ,
Andrea Manica [ctb]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.7.1 dated 2025-04-07 and 0.7.2 dated 2025-04-14
DESCRIPTION | 8 MD5 | 114 +-- NEWS.md | 442 ++++++------- R/sysdata.rda |binary build/partial.rdb |binary build/vignette.rds |binary data/cross_blended_hypsometric_tints_db.rda |binary data/grass_db.rda |binary data/hypsometric_tints_db.rda |binary data/princess_db.rda |binary data/volcano2.rda |binary inst/schemaorg.json | 4 tests/testthat/test-arrange-SpatVector.R | 4 tests/testthat/test-as_coordinates.R | 3 tests/testthat/test-as_sf.R | 4 tests/testthat/test-as_spatraster.R | 6 tests/testthat/test-as_spatvector.R | 20 tests/testthat/test-as_tibble-Spat.R | 4 tests/testthat/test-bind-cols-SpatVector.R | 16 tests/testthat/test-bind-rows-SpatVector.R | 30 tests/testthat/test-compare_spatrasters.R | 12 tests/testthat/test-count-tally-SpatVector.R | 26 tests/testthat/test-distinct-SpatVector.R | 18 tests/testthat/test-drop_na-Spat.R | 8 tests/testthat/test-fill-SpatVector.R | 14 tests/testthat/test-filter-Spat.R | 12 tests/testthat/test-fortify-Spat.R | 10 tests/testthat/test-geom_spat_contour.R | 8 tests/testthat/test-geom_spat_contour_fill.R | 6 tests/testthat/test-geom_spat_contour_text.R | 10 tests/testthat/test-geom_spatraster_1lyr.R | 6 tests/testthat/test-geom_spatraster_1lyr_coltab.R | 702 +++++++++++----------- tests/testthat/test-geom_spatraster_3lyr.R | 6 tests/testthat/test-geom_spatraster_rgb.R | 12 tests/testthat/test-geom_spatvector.R | 6 tests/testthat/test-glimpse-Spat.R | 8 tests/testthat/test-group-by-SpatVector-terra.R | 16 tests/testthat/test-group-by-SpatVector.R | 20 tests/testthat/test-group-data-SpatVector.R | 24 tests/testthat/test-join-SpatVector.R | 12 tests/testthat/test-keep_coltab.R | 18 tests/testthat/test-mutate-Spat.R | 8 tests/testthat/test-pivot-long-SpatVector.R | 34 + tests/testthat/test-pivot-wide-SpatVector.R | 32 + tests/testthat/test-pull-Spat.R | 4 tests/testthat/test-pull_crs.R | 1 tests/testthat/test-relocate-Spat.R | 2 tests/testthat/test-rename-Spat.R | 6 tests/testthat/test-replace_na-Spat.R | 2 tests/testthat/test-rowwise-SpatVector-terra.R | 8 tests/testthat/test-rowwise-SpatVector.R | 5 tests/testthat/test-scales_col_cross_blended.R | 2 tests/testthat/test-select-Spat.R | 6 tests/testthat/test-slice-SpatRaster.R | 9 tests/testthat/test-slice-SpatVector.R | 57 + tests/testthat/test-stat_spatraster.R | 306 ++++----- tests/testthat/test-summarise-SpatVector.R | 7 tests/testthat/test-transmute-Spat.R | 4 58 files changed, 1320 insertions(+), 782 deletions(-)
Title: Stacked Species Distribution Modelling
Description: Allows to map species richness and endemism based on stacked
species distribution models (SSDM). Individuals SDMs can be created using a
single or multiple algorithms (ensemble SDMs). For each species, an SDM can
yield a habitat suitability map, a binary map, a between-algorithm variance
map, and can assess variable importance, algorithm accuracy, and between-
algorithm correlation. Methods to stack individual SDMs include summing
individual probabilities and thresholding then summing. Thresholding can be
based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
distribution. The SSDM package also provides a user-friendly interface.
Author: Sylvain Schmitt [aut, cre],
Robin Pouteau [aut],
Dimitri Justeau [aut],
Florian de Boissieu [aut],
Lukas Baumbach [aut],
Philippe Birnbaum [aut]
Maintainer: Sylvain Schmitt <sylvain.m.schmitt@gmail.com>
Diff between SSDM versions 0.2.9 dated 2023-10-24 and 0.2.10 dated 2025-04-14
DESCRIPTION | 34 ++++++++++++--- MD5 | 38 ++++++++-------- NEWS.md | 5 ++ R/Env.R | 2 R/ensemble_modelling.R | 2 R/evaluate.axes.R | 2 R/modelling.R | 4 - R/save.model.R | 2 R/stack_modelling.R | 2 R/stacking.R | 2 build/vignette.rds |binary inst/doc/GUI.html | 22 ++++----- inst/doc/SSDM.html | 90 ++++++++++++++++++---------------------- man/Env.Rd | 2 man/SSDM.Rd | 22 +++++++++ man/ensemble_modelling.Rd | 2 man/modelling.Rd | 4 - man/stack_modelling.Rd | 2 man/stacking.Rd | 2 tests/testthat/test_modelling.R | 1 20 files changed, 143 insertions(+), 97 deletions(-)
Title: Survival Extension of the Generalized Berk-Jones Test
Description: Implements an extension of the Generalized Berk-Jones (GBJ) statistic for
survival data, sGBJ. It computes the sGBJ statistic and its p-value for testing
the association between a gene set and a time-to-event outcome with possible
adjustment on additional covariates. Detailed method is available at Villain L, Ferte T,
Thiebaut R and Hejblum BP (2021) <doi:10.1101/2021.09.07.459329>.
Author: Laura Villain [aut, cre],
Thomas Ferte [aut],
Rodolphe Thiebault [aut],
Boris P. Hejblum [aut]
Maintainer: Laura Villain <sistm.soft.maintain@gmail.com>
Diff between sGBJ versions 0.1.0 dated 2021-09-15 and 0.1.1 dated 2025-04-14
sGBJ-0.1.0/sGBJ/NEWS.md |only sGBJ-0.1.1/sGBJ/DESCRIPTION | 12 ++++++------ sGBJ-0.1.1/sGBJ/MD5 | 5 ++--- sGBJ-0.1.1/sGBJ/R/surv_calc_scores_stats.R | 2 +- 4 files changed, 9 insertions(+), 10 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data sets,
regression models, and more. The code to create the tables is concise
and highly customizable. Data frames can be summarized with any
function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Joseph Larmarange [aut] ,
Michael Curry [aut] ,
Emily de la Rua [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 2.1.0 dated 2025-02-19 and 2.2.0 dated 2025-04-14
DESCRIPTION | 13 MD5 | 221 ++-- NAMESPACE | 3 NEWS.md | 40 R/add_glance.R | 2 R/add_p.R | 3 R/add_q.R | 2 R/add_significance_stars.R | 4 R/add_variable_group_header.R | 38 R/as_flex_table.R | 3 R/as_gt.R | 17 R/as_gtsummary.R | 2 R/as_hux_table.R | 10 R/as_kable.R | 7 R/as_kable_extra.R | 15 R/as_tibble.R | 15 R/brdg_hierarchical.R | 23 R/brdg_summary.R | 4 R/deprecated.R | 14 R/filter_hierarchical.R |only R/global_pvalue_fun.R | 2 R/import-standalone-check_pkg_installed.R | 14 R/import-standalone-forcats.R | 20 R/modify.R | 2 R/modify_abbreviation.R | 15 R/modify_bold_italic.R | 5 R/modify_column_merge.R | 2 R/modify_footnote.R | 8 R/modify_post_fmt_fun.R |only R/modify_source_note.R | 4 R/sort_hierarchical.R |only R/sysdata.rda |binary R/tbl_cross.R | 2 R/tbl_custom_summary.R | 15 R/tbl_hierarchical.R | 25 R/tbl_likert.R | 15 R/tbl_merge.R | 3 R/tbl_stack.R | 3 R/tbl_strata.R | 21 R/tbl_strata_nested_stack.R | 23 R/tbl_summary.R | 16 R/tbl_survfit.R | 14 R/tbl_svysummary.R | 20 R/utils-add_p_tests.R | 48 R/utils-as.R | 22 R/utils-tbl_custom_summary.R | 2 build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/gtsummary_definition.Rmd | 2 inst/doc/gtsummary_definition.html | 1108 ++++++++++----------- man/add_glance.Rd | 2 man/add_q.Rd | 2 man/add_significance_stars.Rd | 2 man/add_variable_group_header.Rd | 24 man/as_hux_table.Rd | 9 man/filter_hierarchical.Rd |only man/global_pvalue_fun.Rd | 2 man/gtsummary-package.Rd | 1 man/modify.Rd | 2 man/modify_abbreviation.Rd | 5 man/modify_bold_italic.Rd | 5 man/modify_column_merge.Rd | 2 man/modify_footnote2.Rd | 6 man/modify_post_fmt_fun.Rd |only man/modify_source_note.Rd | 5 man/proportion_summary.Rd | 2 man/sort_hierarchical.Rd |only man/tbl_strata.Rd | 4 man/tbl_strata_nested_stack.Rd | 6 man/tests.Rd | 24 tests/testthat/_snaps/add_variable_group_header.md |only tests/testthat/_snaps/filter_hierarchical.md |only tests/testthat/_snaps/modify_bold_italic.md |only tests/testthat/_snaps/sort_hierarchical.md |only tests/testthat/_snaps/tbl_hierarchical.md | 154 +- tests/testthat/test-add_difference.tbl_summary.R | 61 + tests/testthat/test-add_n.tbl_regression.R | 1 tests/testthat/test-add_nevent.tbl_regression.R | 2 tests/testthat/test-add_significance_stars.R | 17 tests/testthat/test-add_variable_group_header.R | 51 tests/testthat/test-as_flex_table.R | 2 tests/testthat/test-as_gt.R | 17 tests/testthat/test-as_hux_table.R | 8 tests/testthat/test-as_kable.R | 6 tests/testthat/test-as_kable_extra.R | 4 tests/testthat/test-as_tibble.R | 38 tests/testthat/test-combine_terms.R | 1 tests/testthat/test-filter_hierarchical.R |only tests/testthat/test-inline_text.R | 6 tests/testthat/test-modify_abbreviation.R | 12 tests/testthat/test-modify_bold_italic.R | 21 tests/testthat/test-modify_column_alignment.R | 1 tests/testthat/test-modify_column_hide.R | 1 tests/testthat/test-modify_column_merge.R | 11 tests/testthat/test-modify_footnote.R | 1 tests/testthat/test-modify_footnote_body.R | 16 tests/testthat/test-modify_footnote_header.R | 16 tests/testthat/test-modify_header.R | 1 tests/testthat/test-modify_missing_symbol.R | 3 tests/testthat/test-modify_post_fmt_fun.R |only tests/testthat/test-modify_source_note.R | 12 tests/testthat/test-modify_table_body.R | 1 tests/testthat/test-modify_table_styling.R | 1 tests/testthat/test-select_helpers.R | 1 tests/testthat/test-sort_hierarchical.R |only tests/testthat/test-tbl_butcher.R | 1 tests/testthat/test-tbl_cross.R | 13 tests/testthat/test-tbl_hierarchical.R | 55 + tests/testthat/test-tbl_likert.R | 19 tests/testthat/test-tbl_merge.R | 2 tests/testthat/test-tbl_regression.R | 1 tests/testthat/test-tbl_stack.R | 2 tests/testthat/test-tbl_strata.R | 17 tests/testthat/test-tbl_strata_nested_stack.R | 31 tests/testthat/test-tbl_summary.R | 14 tests/testthat/test-theme_elements_gtsummary.R | 34 tests/testthat/test-theme_gtsummary.R | 1 vignettes/gtsummary_definition.Rmd | 2 118 files changed, 1629 insertions(+), 985 deletions(-)
Title: Regression Models for Bounded Continuous and Discrete Responses
Description: Functions to fit regression models for bounded continuous and discrete responses. In case of bounded continuous responses (e.g., proportions and rates), available models are the flexible beta (Migliorati, S., Di Brisco, A. M., Ongaro, A. (2018) <doi:10.1214/17-BA1079>), the variance-inflated beta (Di Brisco, A. M., Migliorati, S., Ongaro, A. (2020) <doi:10.1177/1471082X18821213>), the beta (Ferrari, S.L.P., Cribari-Neto, F. (2004) <doi:10.1080/0266476042000214501>), and their augmented versions to handle the presence of zero/one values (Di Brisco, A. M., Migliorati, S. (2020) <doi:10.1002/sim.8406>) are implemented. In case of bounded discrete responses (e.g., bounded counts, such as the number of successes in n trials), available models are the flexible beta-binomial (Ascari, R., Migliorati, S. (2021) <doi:10.1002/sim.9005>), the beta-binomial, and the binomial are implemented. Inference is dealt with a Bayesian approach based on the Hamiltonian Monte C [...truncated...]
Author: Roberto Ascari [aut, cre],
Agnese M. Di Brisco [aut],
Sonia Migliorati [aut],
Andrea Ongaro [aut]
Maintainer: Roberto Ascari <roberto.ascari@unimib.it>
Diff between FlexReg versions 1.3.0 dated 2023-09-29 and 1.3.1 dated 2025-04-14
DESCRIPTION | 26 MD5 | 98 - R/FlexReg-package.R | 2 R/R2_Bayes.R | 2 R/Summaries.R | 2 R/WAIC.R | 6 R/convergence.plot.R | 4 R/densities.R | 5 R/flexreg_Augmentation.R | 2 R/flexreg_binom.R | 2 inst/stan/BetaNo.stan | 20 man/FlexReg-package.Rd | 13 man/R2_bayes.Rd | 2 man/WAIC.Rd | 86 - man/convergence.diag.Rd | 2 man/convergence.plot.Rd | 2 man/curve.density.Rd | 5 man/flexreg.Rd | 2 man/flexreg_binom.Rd | 2 man/summary.flexreg.Rd | 2 src/Makevars.win | 6 src/stanExports_Beta0.h | 1422 ++++++++++------------ src/stanExports_Beta01.h | 1844 +++++++++++++--------------- src/stanExports_Beta01_phi.h | 2037 +++++++++++++++---------------- src/stanExports_Beta0_phi.h | 1607 ++++++++++++------------- src/stanExports_Beta1.h | 1422 ++++++++++------------ src/stanExports_Beta1_phi.h | 1607 ++++++++++++------------- src/stanExports_BetaBin.h | 1068 ++++++++-------- src/stanExports_BetaBin_theta.h | 1402 ++++++++++----------- src/stanExports_BetaNo.h | 1142 ++++++++--------- src/stanExports_BetaNo_phi.h | 1331 ++++++++++---------- src/stanExports_Bin.h | 927 +++++++------- src/stanExports_FB0.h | 1884 +++++++++++++---------------- src/stanExports_FB01.h | 2361 +++++++++++++++++------------------- src/stanExports_FB01_phi.h | 2564 ++++++++++++++++++---------------------- src/stanExports_FB0_phi.h | 2120 +++++++++++++++------------------ src/stanExports_FB1.h | 1884 +++++++++++++---------------- src/stanExports_FB1_phi.h | 2120 +++++++++++++++------------------ src/stanExports_FBB.h | 1601 +++++++++++------------- src/stanExports_FBB_theta.h | 1919 ++++++++++++++--------------- src/stanExports_FBNo.h | 1614 +++++++++++-------------- src/stanExports_FBNo_phi.h | 1808 +++++++++++++--------------- src/stanExports_VIB0.h | 1661 ++++++++++++------------- src/stanExports_VIB01.h | 2088 +++++++++++++++----------------- src/stanExports_VIB01_phi.h | 2321 +++++++++++++++++------------------- src/stanExports_VIB0_phi.h | 1855 +++++++++++++--------------- src/stanExports_VIB1.h | 1661 ++++++++++++------------- src/stanExports_VIB1_phi.h | 1855 +++++++++++++--------------- src/stanExports_VIBNo.h | 1405 ++++++++++----------- src/stanExports_VIBNo_phi.h | 1578 +++++++++++------------- 50 files changed, 24011 insertions(+), 26388 deletions(-)
Title: High Dimensional Categorical Data Visualization
Description: Easy visualization for datasets with more than two categorical variables and additional continuous variables. 'diceplot' is particularly useful for exploring complex categorical data in the context of pathway analysis across multiple conditions. For a detailed documentation please visit <https://dice-and-domino-plot.readthedocs.io/en/latest/>.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between diceplot versions 0.1.6 dated 2025-03-20 and 0.1.7 dated 2025-04-14
DESCRIPTION | 8 - MD5 | 11 + NAMESPACE | 2 R/diceplot.R | 15 ++ R/utils.R | 241 +++++++++++++++++++++++++---------------- man/prepare_simple_box_data.Rd |only tests/test_diceplots.R | 7 - 7 files changed, 179 insertions(+), 105 deletions(-)
Title: Estimates Degrees of Relatedness (Up to the Second Degree) for
Extreme Low-Coverage Data
Description: The goal of the package is to provide an easy-to-use method
for estimating degrees of relatedness (up to the second degree)
for extreme low-coverage data. The package also allows users to
quantify and visualise the level of confidence in the estimated
degrees of relatedness.
Author: Jono Tuke [aut, cre] ,
Adam B. Rohrlach [aut] ,
Wolfgang Haak [aut] ,
Divyaratan Popli [aut]
Maintainer: Jono Tuke <simon.tuke@adelaide.edu.au>
Diff between BREADR versions 1.0.2 dated 2024-09-09 and 1.0.3 dated 2025-04-14
DESCRIPTION | 11 +-- MD5 | 13 ++- NEWS.md | 8 ++ README.md | 192 ++++++++-------------------------------------------------- build |only inst/WORDLIST | 9 ++ inst/doc |only vignettes |only 8 files changed, 59 insertions(+), 174 deletions(-)
Title: Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
Description: This is a port of Jonathan Shewchuk's Triangle library to
R. From his description: "Triangle generates exact Delaunay
triangulations, constrained Delaunay triangulations, conforming
Delaunay triangulations, Voronoi diagrams, and high-quality
triangular meshes. The latter can be generated with no small or
large angles, and are thus suitable for finite element analysis."
Author: Jonathan Richard Shewchuk [ctb, cph],
David C. Sterratt [cph, aut, cre],
Elias Pipping [ctb],
Michael Sumner [ctb]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between RTriangle versions 1.6-0.14 dated 2024-09-04 and 1.6-0.15 dated 2025-04-14
DESCRIPTION | 12 ++--- MD5 | 12 +++-- NEWS | 10 ++++ inst/extdata/out1gcc.Rdata |only inst/extdata/out2gcc.Rdata |only inst/extdata/out3gcc.Rdata |only inst/extdata/out4gcc.Rdata |only src/RTriangle.h | 7 +++ tests/testthat/test-triangulate.R | 81 +++++++++++++++++++++++++++++++++++--- 9 files changed, 106 insertions(+), 16 deletions(-)
Title: R Interface to 'lp_solve' Version 5.5.2.0
Description: The lpSolveAPI package provides an R interface to 'lp_solve',
a Mixed Integer Linear Programming (MILP) solver with support for pure
linear, (mixed) integer/binary, semi-continuous and special ordered sets
(SOS) models.
Author: lp_solve [aut],
Kjell Konis [aut],
Florian Schwendinger [aut, cre],
Kurt Hornik [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between lpSolveAPI versions 5.5.2.0-17.12 dated 2024-07-19 and 5.5.2.0-17.14 dated 2025-04-14
DESCRIPTION | 29 +++++++++---- MD5 | 52 ++++++++++++------------ inst/include/RlpSolveLink.h | 1 inst/include/commonlib.h | 13 +++--- inst/include/lp_MPS.h | 1 inst/include/lp_lib.h | 3 - inst/include/lp_rlp.h | 21 +++++---- inst/include/lp_types.h | 1 src/RlpSolve.c | 1 src/RlpSolveLink.c | 3 - src/lp_solve/colamd.c | 3 - src/lp_solve/commonlib.c | 8 +-- src/lp_solve/lp_MPS.c | 94 ++++++-------------------------------------- src/lp_solve/lp_lib.c | 36 ++++++++-------- src/lp_solve/lp_matrix.c | 6 -- src/lp_solve/lp_params.c | 6 +- src/lp_solve/lp_presolve.c | 12 ++--- src/lp_solve/lp_report.c | 17 ++++--- src/lp_solve/lp_rlp.c | 53 +++++++----------------- src/lp_solve/lp_utils.c | 10 +++- src/lp_solve/lp_wlp.c | 2 src/lp_solve/lusol.c | 5 +- src/lp_solve/lusol6a.c | 9 ++-- src/lp_solve/lusol6l0.c | 5 +- src/lp_solve/lusol6u.c | 5 +- src/lp_solve/mmio.c | 89 +++++++++++++++++++++-------------------- src/lp_solve/yacc_read.c | 78 ++++++++++++++++++------------------ 27 files changed, 245 insertions(+), 318 deletions(-)
Title: Survey Value of Information
Description: Decision support tool for prioritizing sites for ecological
surveys based on their potential to improve plans for conserving
biodiversity (e.g. plans for establishing protected areas). Given a set of
sites that could potentially be acquired for conservation management,
it can be used to generate and evaluate plans for surveying additional
sites. Specifically, plans for ecological surveys can be
generated using various conventional approaches (e.g. maximizing expected
species richness, geographic coverage, diversity of sampled environmental
algorithms. After generating such survey plans, they can be evaluated using
conditions) and maximizing value of information. Please note that several
functions depend on the 'Gurobi' optimization software (available from
<https://www.gurobi.com>). Additionally, the 'JAGS' software (available from
<https://mcmc-jags.sourceforge.io/>) is required to fit hierarchical
generalized linear models. For further details, see Hanson et al. (2023) &l [...truncated...]
Author: Jeffrey O Hanson [aut, cre] ,
Iadine Chades [aut] ,
Emma J Hudgins [aut] ,
Joseph R Bennett [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between surveyvoi versions 1.0.6 dated 2024-02-16 and 1.1.1 dated 2025-04-14
surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-10-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-10-2.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-13-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-14-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-5-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-5-2.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-6-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-6-2.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-7-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-7-2.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-8-1.png |only surveyvoi-1.0.6/surveyvoi/man/figures/README-unnamed-chunk-9-1.png |only surveyvoi-1.1.1/surveyvoi/DESCRIPTION | 16 surveyvoi-1.1.1/surveyvoi/MD5 | 83 surveyvoi-1.1.1/surveyvoi/NAMESPACE | 1 surveyvoi-1.1.1/surveyvoi/NEWS.md | 42 surveyvoi-1.1.1/surveyvoi/R/fit_xgb_occupancy_models.R | 16 surveyvoi-1.1.1/surveyvoi/R/greedy_heuristic_optimization.R |only surveyvoi-1.1.1/surveyvoi/R/package.R | 29 surveyvoi-1.1.1/surveyvoi/README.md | 88 surveyvoi-1.1.1/surveyvoi/build/vignette.rds |binary surveyvoi-1.1.1/surveyvoi/configure | 6 surveyvoi-1.1.1/surveyvoi/configure.ac | 6 surveyvoi-1.1.1/surveyvoi/data/sim_features.rda |binary surveyvoi-1.1.1/surveyvoi/data/sim_sites.rda |binary surveyvoi-1.1.1/surveyvoi/inst/CITATION | 4 surveyvoi-1.1.1/surveyvoi/inst/URLLIST |only surveyvoi-1.1.1/surveyvoi/inst/doc/surveyvoi.Rmd | 2 surveyvoi-1.1.1/surveyvoi/inst/doc/surveyvoi.html | 1375 ++++++---- surveyvoi-1.1.1/surveyvoi/inst/extdata/simulate_data.R | 4 surveyvoi-1.1.1/surveyvoi/man/figures/README-f_plot-1.png |binary surveyvoi-1.1.1/surveyvoi/man/figures/README-management_cost_plot-1.png |only surveyvoi-1.1.1/surveyvoi/man/figures/README-n_plot-1.png |binary surveyvoi-1.1.1/surveyvoi/man/figures/README-p_plot-1.png |binary surveyvoi-1.1.1/surveyvoi/man/figures/README-survey_cost_plot-1.png |only surveyvoi-1.1.1/surveyvoi/man/figures/README-survey_scheme_plot-1.png |only surveyvoi-1.1.1/surveyvoi/man/greedy_heuristic_prioritization.Rd |only surveyvoi-1.1.1/surveyvoi/man/surveyvoi.Rd | 29 surveyvoi-1.1.1/surveyvoi/src/rcpp_expected_value_of_action.cpp | 101 surveyvoi-1.1.1/surveyvoi/src/rcpp_expected_value_of_action.h | 7 surveyvoi-1.1.1/surveyvoi/src/rcpp_heuristic_prioritization.cpp | 105 surveyvoi-1.1.1/surveyvoi/tests/testthat/helper_misc.R | 3 surveyvoi-1.1.1/surveyvoi/tests/testthat/helper_prioritization.R | 73 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_approx_evdsi.R | 2 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_env_div_survey_scheme.R | 6 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_evdsi.R | 2 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_geo_cov_survey_scheme.R | 8 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_greedy_heuristic_prioritization.R |only surveyvoi-1.1.1/surveyvoi/tests/testthat/test_rcpp_expected_value_of_action.R | 41 surveyvoi-1.1.1/surveyvoi/tests/testthat/test_rcpp_greedy_heuristic_prioritization.R | 55 surveyvoi-1.1.1/surveyvoi/vignettes/references.bib | 10 surveyvoi-1.1.1/surveyvoi/vignettes/surveyvoi.Rmd | 2 52 files changed, 1418 insertions(+), 698 deletions(-)
Title: Nonparametric Robust Estimation and Inference Methods using
Local Polynomial Regression and Kernel Density Estimation
Description: Tools for data-driven statistical analysis using local polynomial regression and kernel density estimation methods as described in Calonico, Cattaneo and Farrell (2018, <doi:10.1080/01621459.2017.1285776>): 'lprobust()' for local polynomial point estimation and robust bias-corrected inference, 'lpbwselect()' for local polynomial bandwidth selection, 'kdrobust()' for kernel density point estimation and robust bias-corrected inference, 'kdbwselect()' for kernel density bandwidth selection, and 'nprobust.plot()' for plotting results. The main methodological and numerical features of this package are described in Calonico, Cattaneo and Farrell (2019, <doi:10.18637/jss.v091.i08>).
Author: Sebastian Calonico [aut, cre],
Matias D. Cattaneo [aut],
Max H. Farrell [aut]
Maintainer: Sebastian Calonico <scalonico@ucdavis.edu>
Diff between nprobust versions 0.4.0 dated 2020-08-26 and 0.5.0 dated 2025-04-14
DESCRIPTION | 28 ++++- MD5 | 20 +-- build/partial.rdb |binary man/kdbwselect.Rd | 154 +++++++++++++++--------------- man/kdrobust.Rd | 176 +++++++++++++++++----------------- man/lpbwselect.Rd | 216 +++++++++++++++++++++--------------------- man/lprobust.Rd | 244 ++++++++++++++++++++++++------------------------ man/nprobust-package.Rd | 66 ++++++------ man/nprobust.plot.Rd | 20 +-- src/Makevars | 1 src/Makevars.win | 1 11 files changed, 469 insertions(+), 457 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff [aut, cre],
Christopher N. Lawrence [ctb],
Dave Atkins [ctb],
Jason W. Morgan [ctb],
Achim Zeileis [ctb],
Mael Astruc-Le Souder [ctb],
Kiril Mueller [ctb],
Pieter Schoonees [ctb]
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.31.8.2 dated 2025-02-23 and 0.99.31.8.3 dated 2025-04-14
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/Means.R | 2 +- R/value-filters.R | 2 ++ build/vignette.rds |binary inst/doc/anes48.R | 26 +++++++++++++------------- inst/doc/anes48.html | 2 +- inst/doc/items.R | 2 +- man/value-filters.Rd | 1 + 9 files changed, 31 insertions(+), 28 deletions(-)
Title: Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Description: Uses Bessel functions to calculate the
fundamental and complementary analytic solutions to the
Kelvin differential equation.
Author: Andrew J. Barbour [aut, cre]
Maintainer: Andrew J. Barbour <andy.barbour@gmail.com>
Diff between kelvin versions 2.0-2 dated 2020-06-18 and 2.0-3 dated 2025-04-14
DESCRIPTION | 24 ++++-- MD5 | 24 +++--- R/Beir.R | 14 +-- R/Keir.R | 14 +-- R/kelvin-package.R | 3 build/vignette.rds |binary inst/NEWS.Rd | 20 +++-- inst/doc/Curves.R | 6 - inst/doc/Curves.html | 192 ++++++++++++++++++++++++++++---------------------- man/Beir.Rd | 14 +-- man/Keir.Rd | 14 +-- man/kelvin-package.Rd | 7 + tests/testthat.R | 15 ++- 13 files changed, 200 insertions(+), 147 deletions(-)
Title: Feature Extraction for Discretely-Sampled Functional Data
Description: Discretely-sampled function is first smoothed. Features
of the smoothed function are then extracted. Some of the key
features include mean value, first and second derivatives,
critical points (i.e. local maxima and minima), curvature of
cunction at critical points, wiggliness of the function, noise
in data, and outliers in data.
Author: Ravi Varadhan [aut, cre],
Johns Hopkins University [aut],
MKG Subramaniam [aut],
AT&T Reserach Labs. [aut]
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between features versions 2015.12-1 dated 2015-12-01 and 2025.1 dated 2025-04-14
DESCRIPTION | 34 +++++++++++++++++++++++----------- MD5 | 6 +++--- R/features.R | 9 ++++----- man/features.Rd | 2 +- 4 files changed, 31 insertions(+), 20 deletions(-)
Title: Data Sets from Montgomery, Peck and Vining
Description: Most of this package consists of data sets from the
textbook Introduction
to Linear Regression Analysis (3rd ed), by Montgomery, Peck
and Vining.
Some additional data sets and functions are also included.
Author: W.J. Braun [aut, cre],
S. MacQueen [aut]
Maintainer: W.J. Braun <john.braun@ubc.ca>
Diff between MPV versions 1.64 dated 2024-08-17 and 2.0 dated 2025-04-14
MPV-1.64/MPV/R/rftest.R |only MPV-1.64/MPV/data/p12.16.rda |only MPV-1.64/MPV/data/p5.13.rda |only MPV-1.64/MPV/data/p5.21.rda |only MPV-1.64/MPV/data/p5.22.rda |only MPV-1.64/MPV/data/p5.23.rda |only MPV-1.64/MPV/data/p5.24.rda |only MPV-1.64/MPV/data/p7.13.rda |only MPV-1.64/MPV/data/p7.17.rda |only MPV-1.64/MPV/data/p7.18.rda |only MPV-1.64/MPV/data/p7.20.rda |only MPV-1.64/MPV/data/p8.16.rda |only MPV-1.64/MPV/data/table5.2.rda |only MPV-1.64/MPV/data/table5.5.rda |only MPV-1.64/MPV/data/table5.9.rda |only MPV-1.64/MPV/man/p12.16.Rd |only MPV-1.64/MPV/man/p5.13.Rd |only MPV-1.64/MPV/man/p5.21.Rd |only MPV-1.64/MPV/man/p5.22.Rd |only MPV-1.64/MPV/man/p5.23.Rd |only MPV-1.64/MPV/man/p5.24.Rd |only MPV-1.64/MPV/man/p7.13.Rd |only MPV-1.64/MPV/man/p7.17.Rd |only MPV-1.64/MPV/man/p7.18.Rd |only MPV-1.64/MPV/man/p7.20.Rd |only MPV-1.64/MPV/man/p8.16.Rd |only MPV-1.64/MPV/man/rftest.Rd |only MPV-1.64/MPV/man/table5.2.Rd |only MPV-1.64/MPV/man/table5.5.Rd |only MPV-1.64/MPV/man/table5.9.Rd |only MPV-2.0/MPV/DESCRIPTION | 31 ++++----- MPV-2.0/MPV/MD5 | 117 +++++++++++++++++------------------- MPV-2.0/MPV/NAMESPACE | 2 MPV-2.0/MPV/R/postunstack.R |only MPV-2.0/MPV/data/ACF.rda |only MPV-2.0/MPV/data/ClothStrength.rda |only MPV-2.0/MPV/data/airconditioner.rda |only MPV-2.0/MPV/data/airplane.rda |only MPV-2.0/MPV/data/airplane.sim01.rda |only MPV-2.0/MPV/data/airplane.sim02.rda |only MPV-2.0/MPV/data/airplane.sim11.rda |only MPV-2.0/MPV/data/airplane2.rda |only MPV-2.0/MPV/data/airplane3.rda |only MPV-2.0/MPV/data/p2.17.rda |binary MPV-2.0/MPV/data/p2.18.rda |binary MPV-2.0/MPV/data/p5.12.rda |binary MPV-2.0/MPV/data/p5.12.txt.gz |only MPV-2.0/MPV/data/radon.rda |binary MPV-2.0/MPV/data/rectangles.rda |binary MPV-2.0/MPV/data/soilstudy.rda |only MPV-2.0/MPV/data/table.b15.rda |binary MPV-2.0/MPV/data/table.b16.rda |binary MPV-2.0/MPV/data/table.b17.rda |binary MPV-2.0/MPV/data/table.b18.rda |binary MPV-2.0/MPV/data/table.b19.rda |binary MPV-2.0/MPV/data/table.b20.rda |binary MPV-2.0/MPV/data/table.b22.rda |binary MPV-2.0/MPV/data/table.b23.rda |binary MPV-2.0/MPV/data/table.b24.rda |binary MPV-2.0/MPV/data/table.b24.txt.gz |only MPV-2.0/MPV/data/table.b25.rda |binary MPV-2.0/MPV/data/table.b25.txt.gz |only MPV-2.0/MPV/data/widths.rda |binary MPV-2.0/MPV/data/wxNWO.rda |binary MPV-2.0/MPV/man/ACF.Rd |only MPV-2.0/MPV/man/ClothStrength.Rd |only MPV-2.0/MPV/man/airconditioner.Rd |only MPV-2.0/MPV/man/airplane.Rd |only MPV-2.0/MPV/man/airplane.sim01.Rd |only MPV-2.0/MPV/man/airplane.sim02.Rd |only MPV-2.0/MPV/man/airplane.sim11.Rd |only MPV-2.0/MPV/man/airplane2.Rd |only MPV-2.0/MPV/man/airplane3.Rd |only MPV-2.0/MPV/man/p5.11.Rd | 9 -- MPV-2.0/MPV/man/p5.12.Rd | 32 ++++----- MPV-2.0/MPV/man/postunstack.Rd |only MPV-2.0/MPV/man/soilstudy.Rd |only MPV-2.0/MPV/man/table.b13.Rd | 16 ++-- MPV-2.0/MPV/man/table.b15.Rd | 2 MPV-2.0/MPV/man/table.b16.Rd | 17 ++--- MPV-2.0/MPV/man/table.b17.Rd | 7 -- MPV-2.0/MPV/man/table.b18.Rd | 5 - MPV-2.0/MPV/man/table.b19.Rd | 5 - MPV-2.0/MPV/man/table.b2.Rd | 16 ++-- MPV-2.0/MPV/man/table.b23.Rd | 3 MPV-2.0/MPV/man/table.b24.Rd | 3 MPV-2.0/MPV/man/table.b25.Rd | 15 +--- 87 files changed, 126 insertions(+), 154 deletions(-)