Title: Analysis and Visualization of Basketball Data
Description: Contains data and code to accompany the book
P. Zuccolotto and M. Manisera (2020) Basketball Data Science. Applications with R. CRC Press. ISBN 9781138600799.
For more details, see the page bdsports.unibs.it/basketballanalyzer/.
Author: Marco Sandri [aut, cre] ,
Paola Zuccolotto [aut] ,
Marica Manisera [aut]
Maintainer: Marco Sandri <basketballanalyzer.help@unibs.it>
Diff between BasketballAnalyzeR versions 0.5.0 dated 2020-06-26 and 0.8.0 dated 2025-04-17
DESCRIPTION | 53 +++++--- MD5 | 132 +++++++++++---------- NAMESPACE | 36 +++-- NEWS.md |only R/CreateRadialPlot.R | 2 R/PbP.BDB.R | 3 R/PbPmanipulation.R | 40 +++++- R/TOPboxes.r |only R/assistnet.R | 138 +++++++++++++++++++--- R/barline.R | 40 ++++-- R/bubbleplot.R | 23 ++- R/corranalysis.R | 1 R/plot.MDSmap.R | 16 +- R/plot.assistnet.R | 27 +++- R/plot.corranalysis.R | 24 ++- R/plot.hclustering.R | 16 +- R/plot.kclustering.R | 9 - R/radialprofile.R | 10 - R/scatterplot.R | 17 +- R/scoredifference.R |only R/shotchart.R | 7 - R/simplereg.R | 2 R/zzz.R | 2 README.md | 32 ++++- build |only man/CreateRadialPlot.Rd | 224 ++++++++++++++++++------------------- man/MDSmap.Rd | 110 +++++++++--------- man/Obox.Rd | 94 +++++++-------- man/PbP.BDB.Rd | 117 ++++++++++--------- man/PbPmanipulation.Rd | 110 +++++++++--------- man/Pbox.Rd | 92 +++++++-------- man/TOPboxes.Rd |only man/Tadd.Rd | 60 ++++----- man/Tbox.Rd | 94 +++++++-------- man/assistnet.Rd | 189 +++++++++++++++++-------------- man/barline.Rd | 113 +++++++++--------- man/bubbleplot.Rd | 160 +++++++++++++------------- man/corranalysis.Rd | 91 +++++++-------- man/densityplot.Rd | 172 ++++++++++++++-------------- man/drawNBAcourt.Rd | 62 +++++----- man/expectedpts.Rd | 202 ++++++++++++++++----------------- man/fourfactors.Rd | 284 +++++++++++++++++++++++------------------------ man/hclustering.Rd | 164 +++++++++++++-------------- man/inequality.Rd | 68 +++++------ man/is.MDSmap.Rd | 66 +++++----- man/is.assistnet.Rd | 64 +++++----- man/is.corranalysis.Rd | 70 +++++------ man/is.fourfactors.Rd | 62 +++++----- man/is.hclustering.Rd | 72 +++++------ man/is.inequality.Rd | 62 +++++----- man/is.kclustering.Rd | 72 +++++------ man/is.simplereg.Rd | 68 +++++------ man/is.variability.Rd | 66 +++++----- man/kclustering.Rd | 186 +++++++++++++++--------------- man/plot.MDSmap.Rd | 157 +++++++++++++------------ man/plot.assistnet.Rd | 146 ++++++++++++------------ man/plot.corranalysis.Rd | 82 ++++++------- man/plot.fourfactors.Rd | 76 ++++++------ man/plot.hclustering.Rd | 154 ++++++++++++------------- man/plot.inequality.Rd | 72 +++++------ man/plot.kclustering.Rd | 105 +++++++++-------- man/plot.simplereg.Rd | 138 +++++++++++----------- man/plot.variability.Rd | 148 ++++++++++++------------ man/radialprofile.Rd | 105 ++++++++--------- man/scatterplot.Rd | 175 ++++++++++++++-------------- man/scoredifference.Rd |only man/scoringprob.Rd | 202 ++++++++++++++++----------------- man/shotchart.Rd | 222 ++++++++++++++++++------------------ man/simplereg.Rd | 118 +++++++++---------- man/variability.Rd | 72 +++++------ 70 files changed, 3048 insertions(+), 2748 deletions(-)
More information about BasketballAnalyzeR at CRAN
Permanent link
Title: Access to the List of Birds Species of Peru
Description: Allows access to the data found in the species list featured in the renowned 'List of the Birds of Peru' Plenge, M. A. (2023) <https://sites.google.com/site/boletinunop/checklist>. This publication stands as one of Peru's most comprehensive reviews of bird diversity. The dataset incorporates detailed species accounts and has been meticulously structured for effortless utilization within the R environment.
Author: Paul E. Santos Andrade [aut, cre]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between avesperu versions 0.0.4 dated 2025-03-29 and 0.0.5 dated 2025-04-17
DESCRIPTION | 8 - MD5 | 22 ++- R/aves_peru_2025_v2.R |only R/get_avesperu.R | 6 - R/internals.R | 186 ++++++++++++++++++++++--------- R/onload.R | 91 ++++++++++----- README.md | 146 ++++++++++++------------ data/aves_peru_2025_v2.rda |only inst/CITATION | 6 - man/aves_peru_2025_v2.Rd |only man/dot-onAttach.Rd |only man/dot-onLoad.Rd |only man/figures/README-unnamed-chunk-2-1.png |binary man/show_progress.Rd |only man/unop_check_update.Rd |only man/unop_update_date.Rd |only 16 files changed, 295 insertions(+), 170 deletions(-)
Title: Slide Automation for Tables, Listings and Figures
Description: The normal process of creating clinical study slides is that
a statistician manually type in the numbers from outputs and a
separate statistician to double check the typed in numbers. This
process is time consuming, resource intensive, and error prone.
Automatic slide generation is a solution to address these issues. It
reduces the amount of work and the required time when creating slides,
and reduces the risk of errors from manually typing or copying numbers
from the output to slides. It also helps users to avoid unnecessary
stress when creating large amounts of slide decks in a short time
window.
Author: Joe Zhu [cre, aut] ,
Heng Wang [aut],
Yinqi Zhao [aut],
Bo Ci [aut],
Liming Li [aut],
Laura Wang [ctb],
Xiaoli Duan [aut],
Stefan Pascal Thoma [aut],
Thomas Neitmann [ctb],
Miles Almond [aut],
Mahdi About [ctb],
Kai Lim [ctb],
Nolan Steed [ctb],
Daol [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between autoslider.core versions 0.2.3 dated 2025-01-17 and 0.2.4 dated 2025-04-17
DESCRIPTION | 29 - MD5 | 123 ++--- NAMESPACE | 12 NEWS.md | 10 R/cached_data.R | 10 R/decorate.R | 60 ++ R/format_date.R | 5 R/generate_output.R | 4 R/null_report.R | 2 R/package.R | 31 - R/save_output.R | 56 ++ R/t_ae_pt_diff_slide.R | 6 R/t_ae_slide.R | 4 R/t_dd_slide.R | 4 R/t_dm_slide.R | 28 + R/t_ds_slide.R | 4 R/to_ft_funs.R | 38 + R/to_slides.R | 25 - R/util.R | 59 +- build/vignette.rds |binary data/eg_adsl.rda |binary inst/WORDLIST | 2 inst/doc/autoslideR.R | 12 inst/doc/autoslideR.Rmd | 16 inst/doc/autoslideR.html | 533 ++++++++++++------------ inst/doc/downstream.Rmd | 61 +- inst/doc/downstream.html | 61 +- inst/doc/opensource.html | 5 inst/spec.yml | 8 man/decorate.gtsummary.Rd |only man/eg_adsl.Rd | 2 man/format_date.Rd | 4 man/generate_output.Rd | 3 man/generate_outputs.Rd | 3 man/generate_slides.Rd | 2 man/gt_t_dm_slide.Rd |only man/null_report.Rd | 3 man/save_output.Rd | 5 man/save_outputs.Rd | 6 man/slides_from_rds.Rd |only man/trial.Rd |only tests/testthat/_snaps/data_snapshot.md | 6 tests/testthat/_snaps/filter_spec-verbose.md | 2 tests/testthat/_snaps/save_output.md |only tests/testthat/_snaps/t_ae_pt_diff_slide.md | 24 - tests/testthat/_snaps/t_ae_pt_soc_diff_slide.md | 6 tests/testthat/_snaps/t_ae_slide.md | 27 - tests/testthat/_snaps/t_dd_slide.md | 20 tests/testthat/_snaps/t_dm_slide.md | 47 ++ tests/testthat/_snaps/t_ds_slide.md | 68 +-- tests/testthat/ft_0.docx |only tests/testthat/ft_1.docx |only tests/testthat/t_dm_output.rds |binary tests/testthat/test-bad_filters.R | 4 tests/testthat/test-decorate.R | 2 tests/testthat/test-filter_spec-verbose.R | 5 tests/testthat/test-g_mean_slides.R | 1 tests/testthat/test-save_output.R | 71 +-- tests/testthat/test-srep_outputs.R | 3 tests/testthat/test-t_ae_pt_diff_slide.R | 2 tests/testthat/test-t_dd_slide.R | 4 tests/testthat/test-t_dm_slide.R | 5 tests/testthat/test-t_ds_slide.R | 6 tests/testthat/test_format_date.R | 1 vignettes/autoslideR.Rmd | 16 vignettes/downstream.Rmd | 61 +- 66 files changed, 983 insertions(+), 634 deletions(-)
More information about autoslider.core at CRAN
Permanent link
Title: Extended Evolutionary and Genetic Algorithms
Description: Implementation of a scalable, highly configurable, and
e(x)tended architecture for (e)volutionary and (g)enetic (a)lgorithms.
Multiple representations (binary, real-coded, permutation, and
derivation-tree), a rich collection of genetic operators,
as well as an extended processing pipeline are provided
for genetic algorithms (Goldberg, D. E. (1989, ISBN:0-201-15767-5)),
differential evolution (Price, Kenneth V., Storn, Rainer M. and Lampinen, Jouni A. (2005)
<doi:10.1007/3-540-31306-0>), simulated annealing (Aarts, E., and Korst, J.
(1989, ISBN:0-471-92146-7)), grammar-based genetic programming
(Geyer-Schulz (1997, ISBN:978-3-7908-0830-X)), and grammatical evolution
(Ryan, C., O'Neill, M., and Collins, J. J. (2018) <doi:10.1007/978-3-319-78717-6>).
All algorithms reuse basic adaptive mechanisms for performance optimization.
Sequential or parallel execution (on multi-core machines,
local clusters, and high-performance computing environments)
is available for all algorithms. S [...truncated...]
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xega versions 0.9.0.0 dated 2024-03-20 and 0.9.0.8 dated 2025-04-17
DESCRIPTION | 14 MD5 | 65 ++-- NAMESPACE | 14 NEWS |only R/createExclusiveFile.R |only R/sgXCrossoverFactory.R | 16 - R/sgXDecodeFactory.R | 12 R/sgXGeneMapFactory.R | 4 R/sgXInitFactory.R | 9 R/sgXMutationFactory.R | 14 R/sgXReplicationFactory.R | 7 R/sgaProblems.R | 4 R/sgpProblems.R | 30 +- R/xega-package.R | 75 ++--- R/xegaRerun.R | 10 R/xegaRun.R | 542 ++++++++++++++++++++++++++------------ R/xegaVersion.R | 6 README | 6 man/NewEnvXOR.Rd | 21 - man/Parabola2DEarly.Rd | 4 man/compileBNF.Rd | 2 man/createExclusiveFile.Rd |only man/lau15.Rd | 6 man/sgXCrossoverFactory.Rd | 15 - man/sgXDecodeGeneFactory.Rd | 7 man/sgXGeneMapFactory.Rd | 3 man/sgXInitGeneFactory.Rd | 7 man/sgXMutationFactory.Rd | 13 man/sgXReplicationFactory.Rd | 8 man/xega.Rd | 80 +++-- man/xegaReRun.Rd | 10 man/xegaRun.Rd | 444 +++++++++++++++++++++---------- man/xegaVersion.Rd | 2 tests/testthat/test-sgpProblems.R | 2 tests/testthat/test-xega.R | 26 + 35 files changed, 970 insertions(+), 508 deletions(-)
Title: Shiny UI Widgets for Small Screens
Description: Provides UI widget and layout functions for writing Shiny apps
that work well on small screens.
Author: Joe Cheng [cre, aut],
Posit Software, PBC [cph, fnd]
Maintainer: Joe Cheng <joe@posit.co>
Diff between miniUI versions 0.1.1.1 dated 2018-05-18 and 0.1.2 dated 2025-04-17
DESCRIPTION | 21 ++++---- MD5 | 17 +++--- NEWS.md |only R/layout.R | 116 +++++++++++++++++++++++------------------------ README.md | 6 +- man/miniButtonBlock.Rd | 9 +-- man/miniContentPanel.Rd | 13 ++--- man/miniPage.Rd | 11 ++-- man/miniTabstripPanel.Rd | 19 +++---- man/miniTitleBar.Rd | 31 ++++++------ 10 files changed, 122 insertions(+), 121 deletions(-)
Title: Statistics for Holland's Theory of Vocational Choice
Description: Offers a convenient way to compute parameters
in the framework of the theory of vocational choice introduced by
J.L. Holland, (1997). A comprehensive summary to this theory
of vocational choice is given in Holland, J.L. (1997). Making vocational
choices. A theory of vocational personalities and work environments.
Lutz, FL: Psychological Assessment.
Author: Joerg-Henrik Heine [aut, cre, com],
Florian Hartmann [aut, com],
Bernhard Ertl [rev, com],
Christian Tarnai [com, ths]
Maintainer: Joerg-Henrik Heine <jhheine@googlemail.com>
Diff between holland versions 0.1.2-1 dated 2021-09-01 and 0.1.2-3 dated 2025-04-17
holland-0.1.2-1/holland/R/i.str.pattern.R |only holland-0.1.2-1/holland/man/holland-package.Rd |only holland-0.1.2-3/holland/DESCRIPTION | 10 +++--- holland-0.1.2-3/holland/MD5 | 33 +++++++++----------- holland-0.1.2-3/holland/NEWS | 10 +++--- holland-0.1.2-3/holland/R/holland-package.R | 6 +-- holland-0.1.2-3/holland/R/i.gesvector.R | 1 holland-0.1.2-3/holland/R/sim_score_data.R | 2 - holland-0.1.2-3/holland/data/AIST_2005_F_1270.RData |binary holland-0.1.2-3/holland/data/AIST_2005_M_1226.RData |binary holland-0.1.2-3/holland/data/AIST_2019_F_2015.RData |binary holland-0.1.2-3/holland/data/AIST_2019_M_1661.RData |binary holland-0.1.2-3/holland/data/example1.RData |binary holland-0.1.2-3/holland/data/example2.RData |binary holland-0.1.2-3/holland/data/example3.RData |binary holland-0.1.2-3/holland/data/example4.RData |binary holland-0.1.2-3/holland/man/AIST_2005_M_1226.Rd | 2 - holland-0.1.2-3/holland/man/holland_PACKAGE.Rd |only holland-0.1.2-3/holland/man/sim_score_data.Rd | 2 - 19 files changed, 34 insertions(+), 32 deletions(-)
Title: World Population Prospects 2015
Description: Provides data from the United Nation's World Population Prospects 2015.
Author: Population Division, Department of Economic and Social Affairs, United
Nations [aut],
Hana Sevcikova [cre]
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between wpp2015 versions 1.1-2 dated 2019-01-07 and 1.1-3 dated 2025-04-17
ChangeLog | 4 ++ DESCRIPTION | 15 +++++++--- MD5 | 16 +++++------ man/ASMR.Rd | 74 ++++++++++++++++++++++++++--------------------------- man/MigByAge.Rd | 2 - man/PopByAge.Rd | 2 - man/UNlocations.Rd | 4 +- man/e0.Rd | 6 ++-- man/tfr.Rd | 6 ++-- 9 files changed, 69 insertions(+), 60 deletions(-)
Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph],
Sebastian Krantz [ctb]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>
Diff between kit versions 0.0.19 dated 2024-09-07 and 0.0.20 dated 2025-04-17
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/call.R | 2 +- inst/NEWS.Rd | 10 ++++++++++ src/dup.c | 4 ++-- src/dupLen.c | 4 ++-- src/fpos.c | 4 ++-- src/iif.c | 2 +- src/kit.h | 6 ++++++ src/nswitch.c | 2 +- src/psort.c | 2 +- src/psum.c | 2 +- src/share.c | 2 +- src/topn.c | 2 +- src/utils.c | 6 +++--- src/vswitch.c | 2 +- 16 files changed, 52 insertions(+), 36 deletions(-)
Title: Exploration and Graphics for RivEr Trends Confidence Intervals
Description: Collection of functions to evaluate uncertainty of results from
water quality analysis using the Weighted Regressions on Time Discharge and
Season (WRTDS) method. This package is an add-on to the EGRET package that
performs the WRTDS analysis. The WRTDS modeling
method was initially introduced and discussed in Hirsch et al. (2010) <doi:10.1111/j.1752-1688.2010.00482.x>,
and expanded in Hirsch and De Cicco (2015) <doi:10.3133/tm4A10>. The
paper describing the uncertainty and confidence interval calculations
is Hirsch et al. (2015) <doi:10.1016/j.envsoft.2015.07.017>.
Author: Laura DeCicco [aut, cre] ,
Robert Hirsch [aut] ,
Stacey Archfield [ctb] ,
Jennifer Murphy [ctb]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRETci versions 2.0.4 dated 2021-04-13 and 2.0.5 dated 2025-04-17
DESCRIPTION | 26 MD5 | 79 +- NAMESPACE | 5 NEWS |only R/kalman_bootstrapping.R | 2 R/plotCIs.R | 208 ++++--- R/runGroupsBoot.R | 452 ++++++++--------- R/runPairsBoot.R | 444 +++++++++------- R/run_bootstraps.R |only R/sysdata.rda |only R/wBTCode.R | 41 - README.md | 191 ++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 28 - inst/doc/EGRETci.R | 204 ++++--- inst/doc/EGRETci.Rmd | 162 ++---- inst/doc/EGRETci.html | 1008 ++++++++++++++++++++++++++------------ inst/doc/Enhancements.R | 132 ++-- inst/doc/Enhancements.Rmd | 3 inst/doc/Enhancements.html | 786 ++++++++++++++++++++++------- man/EGRETci-package.Rd | 18 man/boot_message.Rd |only man/calc_boot_out.Rd |only man/ciBands.Rd | 2 man/ciCalculations.Rd | 78 +- man/figures/logo.png |binary man/makeAnnualPI.Rd | 87 +-- man/makeDailyPI.Rd | 78 +- man/makeMonthPI.Rd | 84 +-- man/paVector.Rd |only man/plotFluxHistBoot.Rd | 2 man/plotHistogramTrend.Rd | 2 man/runGroupsBoot.Rd | 14 man/runPairsBoot.Rd | 20 man/run_bootstraps.Rd |only man/single_boot_run.Rd |only man/wBT.Rd | 2 tests/testthat/tests_boot_tests.R | 46 - tests/testthat/tests_kalman.R | 4 vignettes/EGRETci.Rmd | 162 ++---- vignettes/Enhancements.Rmd | 3 vignettes/css |only vignettes/img |only vignettes/logo.png |only 45 files changed, 2600 insertions(+), 1773 deletions(-)
Title: Interior Point Conic Optimization Solver
Description: A versatile interior point solver that solves linear programs (LPs), quadratic programs (QPs), second-order cone programs (SOCPs), semidefinite programs (SDPs), and problems with exponential and power cone constraints (<https://clarabel.org/stable/>). For quadratic objectives, unlike interior point solvers based on the standard homogeneous self-dual embedding (HSDE) model, Clarabel handles quadratic objective without requiring any epigraphical reformulation of its objective function. It can therefore be significantly faster than other HSDE-based solvers for problems with quadratic objective functions. Infeasible problems are detected using using a homogeneous embedding technique.
Author: Balasubramanian Narasimhan [aut, cre],
Paul Goulart [aut, cph],
Yuwen Chen [aut],
Hiroaki Yutani [ctb] ,
David Zimmermann-Kollenda [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between clarabel versions 0.10.0 dated 2025-02-18 and 0.10.1 dated 2025-04-17
DESCRIPTION | 12 +---- MD5 | 14 +++--- build/vignette.rds |binary src/Makevars.in | 9 ++- src/Makevars.win | 10 ++-- src/rust/Cargo.lock | 114 ++++++++++++++++++++++++------------------------- src/rust/Cargo.toml | 6 +- src/rust/vendor.tar.xz |binary 8 files changed, 82 insertions(+), 83 deletions(-)
Title: Batch Processing for Chat Models
Description: Batch processing framework for 'ellmer' chat models.
Provides both sequential and parallel processing of chat interactions
with features including tool calling and structured data extraction.
Enables workflow management through progress tracking and recovery and
automatic retry with backoff. Additional quality-of-life features
include verbosity (or echo) control and sound notifications.
Parallel processing is implemented via the 'future' framework.
Includes methods for retrieving progress status, chat texts, and chat objects.
Author: Dylan Pieper [aut, cre]
Maintainer: Dylan Pieper <dylanpieper@gmail.com>
Diff between hellmer versions 0.1.1 dated 2025-03-14 and 0.1.2 dated 2025-04-17
hellmer-0.1.1/hellmer/man/create_auth_error.Rd |only hellmer-0.1.1/hellmer/man/is_auth_error.Rd |only hellmer-0.1.1/hellmer/man/process.Rd |only hellmer-0.1.2/hellmer/DESCRIPTION | 25 hellmer-0.1.2/hellmer/MD5 | 60 - hellmer-0.1.2/hellmer/NAMESPACE | 3 hellmer-0.1.2/hellmer/NEWS.md | 30 hellmer-0.1.2/hellmer/R/batch-methods.R |only hellmer-0.1.2/hellmer/R/classes.R | 95 +- hellmer-0.1.2/hellmer/R/hellmer-core.R | 517 +++++------- hellmer-0.1.2/hellmer/R/hellmer.R | 270 +++--- hellmer-0.1.2/hellmer/R/import.R | 1 hellmer-0.1.2/hellmer/README.md | 180 ++-- hellmer-0.1.2/hellmer/build/vignette.rds |binary hellmer-0.1.2/hellmer/inst/doc/using-chat-models.Rmd | 76 - hellmer-0.1.2/hellmer/inst/doc/using-chat-models.html | 79 - hellmer-0.1.2/hellmer/man/batch.Rd | 14 hellmer-0.1.2/hellmer/man/batch.future_chat.Rd |only hellmer-0.1.2/hellmer/man/batch.sequential_chat.Rd |only hellmer-0.1.2/hellmer/man/capture.Rd | 6 hellmer-0.1.2/hellmer/man/capture_with_retry.Rd | 22 hellmer-0.1.2/hellmer/man/chat_future.Rd | 89 -- hellmer-0.1.2/hellmer/man/chat_sequential.Rd | 82 - hellmer-0.1.2/hellmer/man/figures/hellmer-hex.png |binary hellmer-0.1.2/hellmer/man/figures/judgements.gif |only hellmer-0.1.2/hellmer/man/finish_successful_batch.Rd | 4 hellmer-0.1.2/hellmer/man/hellmer-package.Rd | 2 hellmer-0.1.2/hellmer/man/is_retry_error.Rd |only hellmer-0.1.2/hellmer/man/process_chunks.Rd | 19 hellmer-0.1.2/hellmer/man/process_future.Rd | 34 hellmer-0.1.2/hellmer/man/process_judgements.Rd | 13 hellmer-0.1.2/hellmer/man/process_sequential.Rd |only hellmer-0.1.2/hellmer/tests/testthat/test-chat-future.R | 72 + hellmer-0.1.2/hellmer/tests/testthat/test-chat-sequential.R | 55 - hellmer-0.1.2/hellmer/tests/testthat/test-retries.R |only hellmer-0.1.2/hellmer/vignettes/using-chat-models.Rmd | 76 - 36 files changed, 909 insertions(+), 915 deletions(-)
Title: Estimation of Environmental Variables and Genetic Parameters
Description: Performs analyzes and estimates of environmental covariates
and genetic parameters related to selection strategies and development
of superior genotypes. It has two main functionalities, the first being
about prediction models of covariates and environmental processes, while
the second deals with the estimation of genetic parameters and selection
strategies. Designed for researchers and professionals in genetics and
environmental sciences, the package combines statistical methods
for modeling and data analysis. This includes the plastochron estimate
proposed by Porta et al. (2024) <doi:10.1590/1807-1929/agriambi.v28n10e278299>,
Stress indices for genotype selection referenced by Ghazvini et al. (2024)
<doi:10.1007/s10343-024-00981-1>, the Environmental Stress Index described by
Tazzo et al. (2024) <https://revistas.ufg.br/vet/article/view/77035>,
industrial quality indices of wheat genotypes (Szareski et al., 2019),
<doi:10.4238/gmr18223>, Ear Indexes estimation [...truncated...]
Author: Willyan Junior Adorian Bandeira [aut, cre]
,
Ivan Ricardo Carvalho [aut, ctb]
,
Murilo Vieira Loro [aut, ctb] ,
Leonardo Cesar Pradebon [aut, ctb]
,
Jose Antonio Gonzalez da Silva [aut, ctb]
Maintainer: Willyan Junior Adorian Bandeira <bandeira.wjab@gmail.com>
Diff between EstimateBreed versions 1.0.0 dated 2025-03-22 and 1.0.1 dated 2025-04-17
DESCRIPTION | 8 MD5 | 18 +- NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/EnvironmentalAnalysis.R | 25 +-- inst/doc/EnvironmentalAnalysis.Rmd | 3 inst/doc/EnvironmentalAnalysis.html | 297 +----------------------------------- inst/doc/SelectionAnalysis.html | 4 vignettes/EnvironmentalAnalysis.Rmd | 3 10 files changed, 50 insertions(+), 312 deletions(-)
Title: Process and Report 'GreenFeed' Data
Description: Provides tools for downloading, processing, and reporting daily and finalized 'GreenFeed' data.
Author: Guillermo Martinez-Boggio [cre, aut, cph]
,
Meredith Harrison [ctb],
Patrick Lutz [ctb]
Maintainer: Guillermo Martinez-Boggio <guillermo.martinezboggio@wisc.edu>
Diff between greenfeedr versions 1.2.0 dated 2025-03-15 and 1.2.1 dated 2025-04-17
DESCRIPTION | 6 - MD5 | 38 +++---- NEWS.md | 4 R/compare_gfdata.R | 4 R/get_gfdata.R | 73 +++++++++----- R/pellin.R | 111 +++++++++++++-------- R/process_gfdata.R | 4 R/report_gfdata.R | 75 +++++++++++--- R/utils.R | 48 ++++----- R/viseat.R | 115 ++++++++++++++-------- inst/FinalReportsGF.Rmd | 217 +++++++++++++++++++++++++------------------ inst/doc/greenfeedr.html | 31 +++--- man/compare_gfdata.Rd | 4 man/get_gfdata.Rd | 8 + man/pellin.Rd | 6 - man/process_gfdata.Rd | 4 man/process_rfid_data.Rd | 6 - man/report_gfdata.Rd | 6 - man/viseat.Rd | 6 - tests/testthat/test-viseat.R | 10 - 20 files changed, 465 insertions(+), 311 deletions(-)
Title: The BMT Distribution
Description: Density, distribution, quantile function, random number generation for the BMT (Bezier-Montenegro-Torres) distribution. Torres-Jimenez C.J. and Montenegro-Diaz A.M. (2017) <doi:10.48550/arXiv.1709.05534>. Moments, descriptive measures and parameter conversion for different parameterizations of the BMT distribution. Fit of the BMT distribution to non-censored data by maximum likelihood, moment matching, quantile matching, maximum goodness-of-fit, also known as minimum distance, maximum product of spacing, also called maximum spacing, and minimum quantile distance, which can also be called maximum quantile goodness-of-fit. Fit of univariate distributions for non-censored data using maximum product of spacing estimation and minimum quantile distance estimation is also included.
Author: Camilo Jose Torres-Jimenez [aut, cre],
Alvaro Mauricio Montenegro-Diaz [ths]
Maintainer: Camilo Jose Torres-Jimenez <cjtorresj@gmail.com>
Diff between BMT versions 0.1.0.3 dated 2017-09-19 and 0.1.3 dated 2025-04-17
DESCRIPTION | 19 +- MD5 | 83 +++++------ NEWS.md |only R/BMT.Phi.R | 12 - R/BMT.Psi.R | 12 - R/BMT.R | 21 +- R/BMTcentral.R | 24 +-- R/BMTchangepars.R | 15 +- R/BMTdispersion.R | 28 +-- R/BMTfit.R | 45 +++--- R/BMTfit.mge.R | 33 ++-- R/BMTfit.mle.R | 39 ++--- R/BMTfit.mme.R | 33 ++-- R/BMTfit.mpse.R | 27 +-- R/BMTfit.mqde.R | 29 +--- R/BMTfit.qme.R | 37 ++--- R/BMTkurtosis.R | 18 +- R/BMTmoments.R | 26 +-- R/BMTskewness.R | 20 +- R/mpsedist.R | 30 ++-- R/mqdedist.R | 28 +-- R/score.math.booklet10.PISA2012.R | 3 R/util-checkparam.R | 16 +- R/util-startarg.R | 252 +++++++++++++++++------------------ man/BMT.Phi.Rd | 2 man/BMT.Psi.Rd | 2 man/BMT.Rd | 52 +++++-- man/BMTcentral.Rd | 11 - man/BMTchangepars.Rd | 18 +- man/BMTdispersion.Rd | 14 - man/BMTfit.Rd | 58 ++++---- man/BMTfit.mge.Rd | 46 +++--- man/BMTfit.mle.Rd | 49 +++--- man/BMTfit.mme.Rd | 45 +++--- man/BMTfit.mpse.Rd | 39 +++-- man/BMTfit.mqde.Rd | 44 +++--- man/BMTfit.qme.Rd | 49 ++++-- man/BMTkurtosis.Rd | 8 - man/BMTmoments.Rd | 33 ++-- man/BMTskewness.Rd | 8 - man/mpsedist.Rd | 42 +++-- man/mqdedist.Rd | 46 ++++-- man/score.math.booklet10.PISA2012.Rd | 9 - 43 files changed, 771 insertions(+), 654 deletions(-)
Title: Compile a Backus-Naur Form Specification into an R Grammar
Object
Description: Translates a BNF (Backus-Naur Form) specification of a
context-free language into an R grammar object
which consists of the start symbol, the symbol table,
the production table, and a short production table.
The short production table is non-recursive.
The grammar object contains the file name from
which it was generated (without a path).
In addition, it provides functions to determine the type
of a symbol (isTerminal() and isNonterminal()) and functions
to access the production table (rules() and derives()).
For the BNF specification, see Backus, John et al. (1962)
"Revised Report on the Algorithmic Language ALGOL 60".
(ALGOL60 standards page <http://www.algol60.org/2standards.htm>,
html-edition <https://www.masswerk.at/algol60/report.htm>)
A preprocessor for macros which expand to standard BNF
is included.
The grammar compiler is an extension of the APL2 implementation in
Geyer-Schulz, Andreas (1997, ISBN:978-3-7908-0830-X).
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaBNF versions 1.0.0.0 dated 2024-02-05 and 1.0.0.5 dated 2025-04-17
DESCRIPTION | 14 +++--- MD5 | 47 +++++++++++++++++----- NAMESPACE | 22 ++++++++++ NEWS |only R/BNF.R | 83 +++++++++++++++++++++++++++------------- R/BNFdiag.R |only R/BNFfileIO.R | 25 +++++++++++- R/BNFhelpers.R |only R/BNFpreprocessing.R |only R/BNFvariables.R |only R/xegaBNF-package.R | 5 -- man/allTerminal.Rd |only man/bindKvariables.Rd |only man/booleanGrammarK.Rd |only man/cL.Rd |only man/compileShortPT.Rd | 29 ++++++++++++- man/dataframePT.Rd |only man/directRecursion.Rd |only man/evenMacro.Rd |only man/existsMacro.Rd |only man/expandGrid.Rd |only man/expandRules.Rd |only man/findNextRuleForExpansion.Rd |only man/finiteRulesOfG.Rd |only man/makeProductionTable.Rd | 7 +++ man/makeStartSymbol.Rd | 7 +++ man/makeSymbolTable.Rd | 7 +++ man/newPT.Rd |only man/nonTerminalsOfG.Rd |only man/pastePart.Rd |only man/preBNF.Rd |only man/printPT.Rd |only man/smallestRules.Rd |only man/variableNamesBNF.Rd |only man/variableNamesLHS.Rd |only man/xegaBNF.Rd | 16 +++++-- tests/testthat/test-BNFfileIO.R | 4 + 37 files changed, 211 insertions(+), 55 deletions(-)
Title: Semiparametric Likelihood Estimation with Errors in Variables
Description: Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Author: Sarah Lotspeich [aut],
Ran Tao [aut, cre],
Joey Sherrill [prg],
Jiangmei Xiong [ctb]
Maintainer: Ran Tao <r.tao@vanderbilt.edu>
Diff between sleev versions 1.0.5 dated 2024-11-22 and 1.1.0 dated 2025-04-17
sleev-1.0.5/sleev/R/cv_observed_data_loglik.R |only sleev-1.0.5/sleev/build |only sleev-1.0.5/sleev/inst/doc |only sleev-1.0.5/sleev/tests/testthat/helper_skips.R |only sleev-1.0.5/sleev/tests/testthat/test_Tang.R |only sleev-1.0.5/sleev/tests/testthat/test_cv_linear2ph.R |only sleev-1.0.5/sleev/tests/testthat/test_lengthenWT.R |only sleev-1.0.5/sleev/tests/testthat/test_linear2ph.R |only sleev-1.0.5/sleev/tests/testthat/test_logistic2ph.R |only sleev-1.0.5/sleev/vignettes |only sleev-1.1.0/sleev/DESCRIPTION | 11 sleev-1.1.0/sleev/MD5 | 73 ++-- sleev-1.1.0/sleev/NAMESPACE | 11 sleev-1.1.0/sleev/R/Class.R |only sleev-1.1.0/sleev/R/RcppExports.R | 37 +- sleev-1.1.0/sleev/R/complete_data.R | 36 +- sleev-1.1.0/sleev/R/cv_linear2ph.R | 93 +---- sleev-1.1.0/sleev/R/cv_logistic2ph.R |only sleev-1.1.0/sleev/R/data.R | 2 sleev-1.1.0/sleev/R/linear2ph.R | 175 ++++------ sleev-1.1.0/sleev/R/logistic2ph.R | 314 +++++++++++-------- sleev-1.1.0/sleev/R/logistic2ph_all.R |only sleev-1.1.0/sleev/R/logistic2ph_summ.R |only sleev-1.1.0/sleev/R/observed_data_loglik.R | 51 ++- sleev-1.1.0/sleev/R/pl_theta.R | 8 sleev-1.1.0/sleev/R/profile_out.R | 123 +++++-- sleev-1.1.0/sleev/R/spline2ph.R |only sleev-1.1.0/sleev/README.md | 252 +++------------ sleev-1.1.0/sleev/data/mock.vccc.rda |binary sleev-1.1.0/sleev/inst/LICENSE_sleev.txt |only sleev-1.1.0/sleev/inst/article |only sleev-1.1.0/sleev/inst/misc |only sleev-1.1.0/sleev/man/coefficients.linear2ph.Rd |only sleev-1.1.0/sleev/man/coefficients.logistic2ph.Rd |only sleev-1.1.0/sleev/man/cv_linear2ph.Rd | 90 +---- sleev-1.1.0/sleev/man/cv_logistic2ph.Rd |only sleev-1.1.0/sleev/man/linear2ph.Rd | 113 +----- sleev-1.1.0/sleev/man/logistic2ph.Rd | 54 +-- sleev-1.1.0/sleev/man/mock.vccc.Rd | 2 sleev-1.1.0/sleev/man/print.linear2ph.Rd |only sleev-1.1.0/sleev/man/print.logistic2ph.Rd |only sleev-1.1.0/sleev/man/print.summary.linear2ph.Rd |only sleev-1.1.0/sleev/man/print.summary.logistic2ph.Rd |only sleev-1.1.0/sleev/man/spline2ph.Rd |only sleev-1.1.0/sleev/man/summary.linear2ph.Rd |only sleev-1.1.0/sleev/man/summary.logistic2ph.Rd |only sleev-1.1.0/sleev/src/RcppExports.cpp | 13 sleev-1.1.0/sleev/src/logistic2ph.cpp | 49 +- sleev-1.1.0/sleev/tests/testthat.R | 12 sleev-1.1.0/sleev/tests/testthat/test-example.R |only 50 files changed, 684 insertions(+), 835 deletions(-)
Title: Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings
Description: Encode network data as strings of printable ASCII characters. Implemented
functions include encoding and decoding adjacency matrices, edgelists, igraph, and
network objects to/from formats 'graph6', 'sparse6', and 'digraph6'. The formats and
methods are described in McKay, B.D. and Piperno, A (2014)
<doi:10.1016/j.jsc.2013.09.003>.
Author: Michal Bojanowski [aut, cre] ,
David Schoch [aut]
Maintainer: Michal Bojanowski <michal2992@gmail.com>
Diff between rgraph6 versions 2.0-4 dated 2024-02-01 and 2.0-5 dated 2025-04-17
DESCRIPTION | 10 +-- MD5 | 18 +++--- NEWS.md | 9 ++- R/as_sparse6.R | 2 README.md | 94 ++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rgraph6.html | 31 ++++++---- man/figures/README-functions-low-1.png |binary tests/testthat/test-as_sparse6.R | 2 10 files changed, 83 insertions(+), 83 deletions(-)
Title: Methods for Dimension Reduction for Regression
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR), Principal
Hessian Directions (phd, using residuals and the response), and an
iterative IRE. Partial methods, that condition on categorical
predictors are also available. A variety of tests, and stepwise
deletion of predictors, is also included. Also included is
code for computing permutation tests of dimension. Adding additional
methods of estimating dimension is straightforward.
For documentation, see the vignette in the package. With version 3.0.4,
the arguments for dr.step have been modified.
Author: Sanford Weisberg, [aut, cre]
Maintainer: "Sanford Weisberg," <sandy@umn.edu>
Diff between dr versions 3.0.10 dated 2015-08-03 and 3.0.11 dated 2025-04-17
DESCRIPTION | 18 MD5 | 29 NAMESPACE | 189 +- NEWS | 32 R/dr.R | 3296 +++++++++++++++++++++++----------------------- R/psave.R | 300 ++-- R/psir.R | 368 ++--- build/vignette.rds |binary inst/CITATION | 28 inst/doc/overview.R | 16 inst/doc/overview.Rnw | 2437 +++++++++++++++++----------------- inst/doc/overview.pdf |binary man/dr.Rd | 425 ++--- man/dr.weights.Rd | 110 - vignettes/overview.Rnw | 2437 +++++++++++++++++----------------- vignettes/overviewold.pdf |only 16 files changed, 4848 insertions(+), 4837 deletions(-)
Title: Import 'REDATAM' Files
Description: Import 'REDATAM' formats into R via the 'Open REDATAM' C++ library.
The full context of this project and details about the implementation are
available in <doi:10.1017/dap.2025.4> (Open Access).
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Lital Barkai [aut],
Ivan Krylov [ctb],
Arseny Kapoulkine [ctb] ,
Oriental Republic of Uruguay [dtc]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between redatam versions 2.1.1 dated 2025-02-20 and 2.1.2 dated 2025-04-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/read_redatam.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary src/redatamlib/database/RedatamDatabase.cpp | 4 ++-- tests/testthat/test-uruguay.R | 6 ++++++ 8 files changed, 23 insertions(+), 13 deletions(-)
Title: Precision of Treatment Hierarchy (POTH)
Description: Calculate POTH for treatment hierarchies from frequentist and Bayesian network meta-analysis. POTH quantifies the certainty in a treatment hierarchy. Subset POTH, POTH residuals, and best k treatments POTH can also be calculated to improve interpretation of treatment hierarchies.
Author: Augustine Wigle [aut, cre, cph]
,
Guido Schwarzer [aut]
Maintainer: Augustine Wigle <amhwigle@uwaterloo.ca>
Diff between poth versions 0.2-0 dated 2024-11-01 and 0.3-0 dated 2025-04-17
poth-0.2-0/poth/man/cumul.Rd |only poth-0.2-0/poth/man/plot.cumul.poth.Rd |only poth-0.3-0/poth/DESCRIPTION | 12 +++--- poth-0.3-0/poth/MD5 | 30 ++++++++------- poth-0.3-0/poth/NAMESPACE | 17 ++++++-- poth-0.3-0/poth/NEWS.md | 10 +++++ poth-0.3-0/poth/R/cumul.poth.R | 63 ++++++++++++++++----------------- poth-0.3-0/poth/R/plot.cumul.poth.R | 50 +++++++++++++------------- poth-0.3-0/poth/R/plot.loo.poth.R | 11 +++-- poth-0.3-0/poth/R/plot.refdist.poth.R |only poth-0.3-0/poth/R/poth-package.R | 23 ++++++------ poth-0.3-0/poth/R/poth.R | 25 ++++++++----- poth-0.3-0/poth/R/refdist.R |only poth-0.3-0/poth/man/bestk.Rd |only poth-0.3-0/poth/man/plot.bestk.poth.Rd |only poth-0.3-0/poth/man/plot.loo.poth.Rd | 9 ++-- poth-0.3-0/poth/man/plot.refdist.Rd |only poth-0.3-0/poth/man/poth-package.Rd | 15 ++++--- poth-0.3-0/poth/man/poth.Rd | 21 +++++++---- poth-0.3-0/poth/man/refdist.Rd |only 20 files changed, 166 insertions(+), 120 deletions(-)
Title: Highly Performant String Case Converter
Description: Provides a case conversion between common cases like CamelCase and
snake_case. Using the 'rust crate heck' <https://github.com/withoutboats/heck>
as the backend for a highly performant case conversion for 'R'.
Author: Josiah Parry [aut] ,
Dyfan Jones [cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between heck versions 0.1.4 dated 2025-04-08 and 0.1.5 dated 2025-04-17
heck-0.1.4/heck/src/Makevars.ucrt |only heck-0.1.5/heck/DESCRIPTION | 6 ++--- heck-0.1.5/heck/MD5 | 17 +++++++--------- heck-0.1.5/heck/NEWS.md | 4 +++ heck-0.1.5/heck/src/Makevars.in | 2 - heck-0.1.5/heck/src/Makevars.win.in | 2 - heck-0.1.5/heck/src/rust/Cargo.lock | 29 +++++++++++++++------------- heck-0.1.5/heck/src/rust/Cargo.toml | 16 +++++++-------- heck-0.1.5/heck/src/rust/vendor-config.toml | 4 --- heck-0.1.5/heck/src/rust/vendor.tar.xz |binary 10 files changed, 41 insertions(+), 39 deletions(-)
Title: High-Dimensional Inference
Description: Implementation of multiple approaches to perform inference in high-dimensional models.
Author: Lukas Meier [aut, cre],
Ruben Dezeure [aut],
Nicolai Meinshausen [aut],
Martin Maechler [aut],
Peter Buehlmann [aut]
Maintainer: Lukas Meier <meier@stat.math.ethz.ch>
Diff between hdi versions 0.1-9 dated 2021-05-27 and 0.1-10 dated 2025-04-17
DESCRIPTION | 30 +++++++++++++++++++++++++----- MD5 | 14 +++++++------- R/multi-split.hierarchical.R | 4 ++-- build/partial.rdb |binary inst/CITATION | 27 +++++++++++++-------------- man/lasso.cv.Rd | 8 ++++---- man/lasso.firstq.Rd | 6 +++--- man/lasso.proj.Rd | 2 +- 8 files changed, 55 insertions(+), 36 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.8.2 dated 2025-03-04 and 0.8.3 dated 2025-04-17
DESCRIPTION | 6 ++-- MD5 | 8 +++--- NEWS.md | 3 ++ src/url_parse.cpp | 58 +++++++++++++++++++++++----------------------- tests/testthat/test_url.R | 1 5 files changed, 40 insertions(+), 36 deletions(-)
Title: Time Series for Data Science
Description: Accompanies the texts Time Series for Data Science with R by Woodward, Sadler and Robertson & Applied Time Series Analysis with R, 2nd edition by Woodward, Gray, and Elliott. It is helpful for data analysis and for time series instruction.
Author: Wayne Woodward [aut],
Bivin Sadler [cre]
Maintainer: Bivin Sadler <bsadler@smu.edu>
Diff between tswge versions 2.1.0 dated 2023-01-31 and 2.2.0 dated 2025-04-17
DESCRIPTION | 14 ++++++++------ MD5 | 10 +++++----- R/fore.arima.wge.R | 2 +- R/gen.sigplusnoise.wge.R | 2 +- R/roll.win.rmse.wge.R | 6 +++--- man/unit.circle.wge.Rd | 2 +- 6 files changed, 19 insertions(+), 17 deletions(-)
Title: Permanent Random Number Sampling
Description: Survey sampling using permanent random numbers (PRN's). A solution
to the problem of unknown overlap between survey samples, which leads to a
low precision in estimates when the survey is repeated or combined with
other surveys. The PRN solution is to supply the U(0, 1) random numbers to
the sampling procedure, instead of having the sampling procedure generate
them. In Lindblom (2014) <doi:10.2478/jos-2014-0047>, and therein cited
papers, it is shown how this is carried out and how it improves the
estimates. This package supports two common fixed-size sampling procedures
(simple random sampling and probability-proportional-to-size sampling) and
includes a function for transforming the PRN's in order to control the
sample overlap.
Author: Kira Coder Gylling [aut, cre]
Maintainer: Kira Coder Gylling <kira.gylling@gmail.com>
Diff between prnsamplr versions 1.0.0 dated 2024-11-20 and 1.1.0 dated 2025-04-17
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- R/pps.R | 2 +- R/srs.R | 2 +- README.md |only man/figures |only 6 files changed, 10 insertions(+), 8 deletions(-)
Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre],
Ben Armstrong [aut],
Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between dlnm versions 2.4.7 dated 2021-10-07 and 2.4.10 dated 2025-04-17
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 28 +++++++++++++++++++++++++++- R/getvcov.R | 5 ++--- build/vignette.rds |binary inst/CITATION | 16 ++++++++++------ inst/NEWS | 28 +++++++++++++++++++++++++++- inst/doc/dlnmExtended.Rnw | 2 +- inst/doc/dlnmExtended.pdf |binary inst/doc/dlnmOverview.pdf |binary inst/doc/dlnmPenalized.pdf |binary inst/doc/dlnmTS.pdf |binary man/cr.Rd | 6 +++--- man/crosspred.Rd | 2 +- man/ps.Rd | 6 +++--- man/smooth.construct.cb.smooth.spec.Rd | 6 +++--- vignettes/dlnmExtended.Rnw | 2 +- 17 files changed, 99 insertions(+), 44 deletions(-)
Title: Location Scale Standardized Distributions
Description: Location-Scale based distributions parameterized in terms of mean, standard deviation, skew and shape parameters and estimation using automatic differentiation. Distributions include the Normal, Student and GED as well as their skewed variants ('Fernandez and Steel'), the 'Johnson SU', and the Generalized Hyperbolic. Also included is the semi-parametric piece wise distribution ('spd') with Pareto tails and kernel interior.
Author: Alexios Galanos [aut, cre, cph]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between tsdistributions versions 1.0.2 dated 2024-08-23 and 1.0.3 dated 2025-04-17
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 6 ++++++ R/estimation.R | 6 +++--- build/partial.rdb |binary inst/doc/estimation_demo.html | 4 ++-- inst/doc/location_scale_distributions.pdf |binary inst/doc/profile_demo.html | 4 ++-- inst/doc/spd_demo.html | 18 +++++++++--------- man/figures |only man/tsdistributions-package.Rd | 2 ++ 11 files changed, 37 insertions(+), 28 deletions(-)
More information about tsdistributions at CRAN
Permanent link
Title: R Commander Plug-in for Case 1 Best-Worst Scaling
Description: Adds menu items to the R Commander for implementing case 1 (object case) best-worst scaling (BWS1) from designing choice sets to measuring preferences for items. BWS1 is a question-based survey method that constructs various combinations of items (choice sets) using the experimental designs, asks respondents to select the best and worst items in each choice set, and then measures preferences for the items by analyzing the responses. For details on BWS1, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki [aut, cre]
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Diff between RcmdrPlugin.BWS1 versions 0.2-2 dated 2024-05-21 and 0.2-3 dated 2025-04-17
DESCRIPTION | 16 +- MD5 | 13 - NEWS | 6 R/RcmdrPlugin.BWS1.R | 315 ++++++++++++++++++++++++++++++++++++++++ inst/CITATION | 8 - inst/etc/menus.txt | 1 man/RcmdrPlugin.BWS1-package.Rd | 34 ++-- man/bws1Response.Rd |only 8 files changed, 362 insertions(+), 31 deletions(-)
More information about RcmdrPlugin.BWS1 at CRAN
Permanent link
Title: Adaptive Double Sparse Iterative Hard Thresholding
Description: Solving high-dimensional double sparse linear regression via an iterative hard thresholding algorithm. Furthermore, the method is extended to jointly estimate multiple graphical models. For more details, please see <https://www.jmlr.org/papers/v25/23-0653.html> and <doi:10.48550/arXiv.2503.18722>.
Author: Yanhang Zhang [aut, cre],
Zhifan Li [aut],
Jianxin Yin [aut],
Shixiang Liu [aut],
Lingren Kong [aut]
Maintainer: Yanhang Zhang <zhangyh98@ruc.edu.cn>
Diff between ADSIHT versions 0.1.0 dated 2024-12-11 and 0.2.0 dated 2025-04-17
DESCRIPTION | 12 +-- MD5 | 12 ++- NAMESPACE | 19 +++-- R/ADSIHT.ML.R | 164 ++++++++++++++++++++++++++++++++++++-------------- R/MIGHT.R |only man/ADSIHT-package.Rd | 2 man/ADSIHT.ML.Rd | 10 ++- man/MIGHT.Rd |only 8 files changed, 152 insertions(+), 67 deletions(-)
Title: Meta-CART: A Flexible Approach to Identify Moderators in
Meta-Analysis
Description: Meta-CART integrates classification and regression trees (CART) into meta-analysis. Meta-CART is a flexible approach to identify interaction effects between moderators in meta-analysis. The method is described in Dusseldorp et al. (2014) <doi:10.1037/hea0000018> and Li et al. (2017) <doi:10.1111/bmsp.12088>.
Author: Xinru Li [aut],
Elise Dusseldorp [aut, cph],
Kaihua Liu [ctb] ,
Juan Claramunt [aut, cre],
Jacqueline Meulman [ctb]
Maintainer: Juan Claramunt <j.claramunt.gonzalez@fsw.leidenuniv.nl>
Diff between metacart versions 2.0-3 dated 2020-07-10 and 3.0.0 dated 2025-04-17
metacart-2.0-3/metacart/NEWS |only metacart-2.0-3/metacart/R/REmrt_look_ahead.R |only metacart-2.0-3/metacart/R/cross_valid_Support.R |only metacart-2.0-3/metacart/R/find_cutoff.R |only metacart-2.0-3/metacart/R/grow_tree_Support.R |only metacart-2.0-3/metacart/R/prune_tree_Support.R |only metacart-3.0.0/metacart/DESCRIPTION | 36 metacart-3.0.0/metacart/MD5 | 116 + metacart-3.0.0/metacart/NAMESPACE | 71 - metacart-3.0.0/metacart/R/BootstrapCIfunctions.R |only metacart-3.0.0/metacart/R/FEmrt_main.R | 148 +- metacart-3.0.0/metacart/R/REmrt_GS.R |only metacart-3.0.0/metacart/R/REmrt_SSS.R |only metacart-3.0.0/metacart/R/REmrt_main.R | 94 + metacart-3.0.0/metacart/R/RcppExports.R | 24 metacart-3.0.0/metacart/R/both_find_two_cutoffs.R |only metacart-3.0.0/metacart/R/computation_functions.R |only metacart-3.0.0/metacart/R/data.R | 2 metacart-3.0.0/metacart/R/fe_FEmrt_SSS.R |only metacart-3.0.0/metacart/R/fe_SSS_ahead_fit.R |only metacart-3.0.0/metacart/R/fe_cross_valid_support.R |only metacart-3.0.0/metacart/R/fe_find_cutoff.R |only metacart-3.0.0/metacart/R/fe_permute.R |only metacart-3.0.0/metacart/R/fe_predict_support.R |only metacart-3.0.0/metacart/R/fe_prune_Support.R |only metacart-3.0.0/metacart/R/fe_prune_functions.R |only metacart-3.0.0/metacart/R/fe_recursive_partition.R |only metacart-3.0.0/metacart/R/metacart-package.R | 87 - metacart-3.0.0/metacart/R/plotFE.R | 555 ++++---- metacart-3.0.0/metacart/R/plotRE.R | 736 +++++++---- metacart-3.0.0/metacart/R/predict.R | 118 - metacart-3.0.0/metacart/R/print.R | 202 +-- metacart-3.0.0/metacart/R/re_GS_lookahead_Support.R |only metacart-3.0.0/metacart/R/re_cross_valid_Support.R |only metacart-3.0.0/metacart/R/re_find_cutoff.R |only metacart-3.0.0/metacart/R/re_permute.R |only metacart-3.0.0/metacart/R/summary.R | 399 +++-- metacart-3.0.0/metacart/man/BootCI.Rd |only metacart-3.0.0/metacart/man/FEmrt.Rd | 49 metacart-3.0.0/metacart/man/Q_selected_size_GS.Rd |only metacart-3.0.0/metacart/man/REmrt.Rd | 37 metacart-3.0.0/metacart/man/REmrt_GS_.Rd | 2 metacart-3.0.0/metacart/man/REmrt_SSS.Rd |only metacart-3.0.0/metacart/man/SimData.Rd | 6 metacart-3.0.0/metacart/man/Xvalid_all.Rd | 19 metacart-3.0.0/metacart/man/compute_rebetQ.Rd | 4 metacart-3.0.0/metacart/man/dat.BCT2009.Rd | 8 metacart-3.0.0/metacart/man/dat.balanced.Rd | 6 metacart-3.0.0/metacart/man/dot-ComputeY.Rd | 2 metacart-3.0.0/metacart/man/dot-PredY.Rd | 2 metacart-3.0.0/metacart/man/encodeHtml.Rd | 2 metacart-3.0.0/metacart/man/find_second_split.Rd | 2 metacart-3.0.0/metacart/man/find_triplet.Rd | 8 metacart-3.0.0/metacart/man/make_first_split.Rd | 12 metacart-3.0.0/metacart/man/metacart-package.Rd | 17 metacart-3.0.0/metacart/man/oval_draw.Rd | 2 metacart-3.0.0/metacart/man/permuteFE.Rd |only metacart-3.0.0/metacart/man/permuteRE.Rd |only metacart-3.0.0/metacart/man/plot.FEmrt.Rd | 3 metacart-3.0.0/metacart/man/plot.REmrt.Rd | 3 metacart-3.0.0/metacart/man/predict.FEmrt.Rd | 6 metacart-3.0.0/metacart/man/predict.REmrt.Rd | 6 metacart-3.0.0/metacart/man/prednode_cpp.Rd | 8 metacart-3.0.0/metacart/man/print.FEmrt.Rd | 5 metacart-3.0.0/metacart/man/print.REmrt.Rd | 5 metacart-3.0.0/metacart/man/rcpp_hello_world.Rd |only metacart-3.0.0/metacart/man/re.cutoff_cpp.Rd | 2 metacart-3.0.0/metacart/man/summary.FEmrt.Rd | 3 metacart-3.0.0/metacart/man/summary.REmrt.Rd | 3 metacart-3.0.0/metacart/man/treepruner.Rd | 2 metacart-3.0.0/metacart/man/updateNodes.Rd | 2 metacart-3.0.0/metacart/src/RcppExports.cpp | 83 + metacart-3.0.0/metacart/src/compute_left_.cpp |only metacart-3.0.0/metacart/src/fe_ComplexityDecrease.cpp |only metacart-3.0.0/metacart/src/fe_FindOffSpringsOrAncestors.cpp |only metacart-3.0.0/metacart/src/rcpp_hello_world.cpp |only 76 files changed, 1819 insertions(+), 1078 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between BiodiversityR versions 2.17-1.1 dated 2025-01-21 and 2.17-2 dated 2025-04-17
DESCRIPTION | 8 - MD5 | 12 +- R/nested.anova.dbrda.R | 268 ++++++++++++++++++++++++------------------------- R/nested.npmanova.R | 224 ++++++++++++++++++++-------------------- README.md | 2 inst/ChangeLog | 12 ++ man/caprescale.Rd | 18 +-- 7 files changed, 280 insertions(+), 264 deletions(-)
Title: Genetic Operations for Grammar-Based Genetic Programming
Description: An implementation of
the representation-dependent gene level operations of grammar-based
genetic programming with genes which are derivation trees
of a context-free grammar: Initialization of a gene with a
complete random derivation tree, decoding of a derivation tree.
Crossover is implemented by exchanging subtrees. Depth-bounds
for the minimal and the maximal depth of the roots of the subtrees
exchanged by crossover can be set.
Mutation is implemented by replacing a subtree by a random subtree.
The depth of the random subtree and the insertion node are
configurable. For details,
see Geyer-Schulz (1997, ISBN:978-3-7908-0830-X).
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaGpGene versions 1.0.0.0 dated 2024-02-15 and 1.0.0.2 dated 2025-04-17
DESCRIPTION | 10 +-- MD5 | 52 ++++++++-------- NAMESPACE | 3 NEWS |only R/xegaGpCrossover.R | 8 +- R/xegaGpDecode.R | 4 - R/xegaGpFindExample.R | 7 +- R/xegaGpGene-package.R | 31 ++++----- R/xegaGpInitGene.R | 110 +++++++++++++++++++++++++++++++--- R/xegaGpMutate.R | 10 +-- R/xegaGplF.R | 32 ++++++++- man/findCrossoverExample.Rd | 7 +- man/lFxegaGpGene.Rd | 31 ++++++++- man/xegaGpAllCross2Gene.Rd | 4 - man/xegaGpCrossoverFactory.Rd | 1 man/xegaGpDecodeGene.Rd | 4 - man/xegaGpFilterCross2Gene.Rd | 2 man/xegaGpFilterCrossGene.Rd | 2 man/xegaGpGene.Rd | 36 ++++++----- man/xegaGpInitGene.Rd | 27 +++++--- man/xegaGpInitGeneFactory.Rd |only man/xegaGpInitGeneGe.Rd |only man/xegaGpMutateAllGene.Rd | 4 - man/xegaGpMutateFilterGene.Rd | 4 - man/xegaGpMutationFactory.Rd | 3 tests/testthat/test-xegaGpCrossover.R | 2 tests/testthat/test-xegaGpDecode.R | 5 + tests/testthat/test-xegaGpInitGene.R |only tests/testthat/test-xegaGpMutate.R | 21 +++--- 29 files changed, 297 insertions(+), 123 deletions(-)
Title: Grammatical Evolution
Description: Grammatical evolution (see O'Neil, M. and
Ryan, C. (2003,ISBN:1-4020-7444-1)) uses decoders to
convert linear (binary or integer genes) into programs.
In addition, automatic determination of codon precision
with a limited rule choice bias is provided.
For a recent survey of grammatical evolution,
see Ryan, C., O'Neill, M., and Collins, J. J. (2018)
<doi:10.1007/978-3-319-78717-6>.
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaGeGene versions 1.0.0.0 dated 2024-02-17 and 1.0.0.3 dated 2025-04-17
DESCRIPTION | 10 +-- MD5 | 49 +++++++++--------- NAMESPACE | 3 + NEWS |only R/xegaGeCodonPrecision.R | 34 +++++++----- R/xegaGeDecode.R | 100 ++++++++++++++++++++++++++++++++++--- R/xegaGeGene-package.R | 43 +++++++-------- R/xegaGeInitGene.R | 11 +--- R/xegaGelF.R | 29 ++++++++++ man/CodonChoiceBiases.Rd | 2 man/CodonChoiceBiasesDeprecated.Rd | 2 man/CodonPrecision.Rd | 6 +- man/CodonPrecisionWithThreshold.Rd | 9 ++- man/MinCodonPrecision.Rd | 4 - man/lFxegaGeGene.Rd | 28 +++++++++- man/mLCMG.Rd | 2 man/mLCMGCodonPrecision.Rd | 4 - man/tLCM.Rd | 2 man/xegaGeDecodeGene.Rd | 13 +++- man/xegaGeDecodeGeneDT.Rd |only man/xegaGeDecodeGeneFactory.Rd |only man/xegaGeGene.Rd | 48 ++++++++++------- man/xegaGeGeneMapFactory.Rd | 5 + man/xegaGeGeneMapMod.Rd | 1 man/xegaGeGeneMapmLCM.Rd | 5 + man/xegaGeInitGene.Rd | 11 +--- man/xegaGePrecisionFactory.Rd | 1 27 files changed, 292 insertions(+), 130 deletions(-)
Title: A Concentration-Response Modeling Utility
Description: The tcplfit2 R package performs basic concentration-response curve fitting. The original tcplFit() function in the tcpl R package performed basic concentration-response curvefitting to 3 models. With tcplfit2, the core tcpl concentration-response functionality has been expanded to process diverse high-throughput screen (HTS) data generated at the US Environmental Protection Agency, including targeted ToxCast, high-throughput transcriptomics (HTTr) and high-throughput phenotypic profiling (HTPP). tcplfit2 can be used independently to support analysis for diverse chemical screening efforts.
Author: Thomas Sheffield [aut],
Jason Brown [ctb] ,
Sarah E. Davidson-Fritz [cre] ,
Madison Feshuk [ctb] ,
Lindsay Knupp [ctb],
Zhihui Zhao [ctb],
Richard S Judson [ctb] ,
Katie Paul Friedman [ctb]
Maintainer: Sarah E. Davidson-Fritz <davidsonfritz.sarah@epa.gov>
Diff between tcplfit2 versions 0.1.7 dated 2024-09-23 and 0.1.8 dated 2025-04-17
DESCRIPTION | 28 MD5 | 71 NAMESPACE | 1 NEWS.md | 6 R/acy.R | 22 R/calcempirical_top.R |only R/concRespPlot.R | 31 R/concRespPlot2.R | 3 R/fitexp4.R | 2 R/fitexp5.R | 2 R/fitgnls.R | 4 R/fithill.R | 4 R/hitcontinner.R | 9 R/hitloginner.R | 6 R/tcplfit2_core.R | 50 R/tcplhit2_core.R | 10 R/toplikelihood.R | 63 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tcplfit2-vignette.R | 515 ++-- inst/doc/tcplfit2-vignette.Rmd | 1088 +++++--- inst/doc/tcplfit2-vignette.html | 3826 +++++++++++++++++------------- man/acgnlsobj.Rd | 2 man/acy.Rd | 12 man/calcempirical_top.Rd |only man/concRespPlot.Rd | 2 man/fitexp4.Rd | 2 man/fitexp5.Rd | 2 man/fitgnls.Rd | 4 man/fithill.Rd | 4 man/gnlsderivobj.Rd | 2 man/hitcontinner.Rd | 11 man/hitloginner.Rd | 2 man/tcplfit2_core.Rd | 12 man/tcplhit2_core.Rd | 9 man/toplikelihood.Rd | 26 vignettes/tcplfit2-vignette.Rmd | 1088 +++++--- vignettes/tcplfit2-vignette_old-2023.html |only 38 files changed, 4373 insertions(+), 2546 deletions(-)
Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph]
,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.10.1 dated 2025-04-08 and 0.11.0 dated 2025-04-17
DESCRIPTION | 6 - MD5 | 24 +++--- NEWS.md | 7 ++ R/config.R | 127 +++++++++++++++++++++++++++++++----- R/server.R | 34 ++++++--- R/ui.R | 164 ++++++++++++++++++++++++++++++++++++++++------- R/util.R | 16 ++-- README.md | 1 inst/css/surveydown.css | 15 ++++ inst/template/survey.qmd | 7 +- man/sd_create_survey.Rd | 7 +- man/sd_question.Rd | 31 +++++--- man/sd_reactive.Rd | 32 ++++++--- 13 files changed, 366 insertions(+), 105 deletions(-)
Title: Prepare Figure Region for Base Graphics
Description: A figure region is prepared, creating a plot region with suitable background color, grid lines or shadings, and providing axes and labeling if not suppressed. Subsequently, information carrying graphics elements can be added (points, lines, barplot with add=TRUE and so forth).
Author: Ulrike Groemping [aut, cre]
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between prepplot versions 1.0-1 dated 2021-04-16 and 1.0-2 dated 2025-04-17
DESCRIPTION | 16 +++++++---- MD5 | 6 ++-- inst/NEWS | 4 ++ man/prepplot.Rd | 76 ++++++++++++++++++++++++++++---------------------------- 4 files changed, 55 insertions(+), 47 deletions(-)
Title: Working with 'MCSim' Models
Description: Tools that facilitate ordinary differential equation (ODE) modeling in 'R'. This package allows one to perform simulations for ODE models that are encoded in the GNU 'MCSim' model specification language (Bois, 2009) <doi:10.1093/bioinformatics/btp162> using ODE solvers from the 'R' package 'deSolve' (Soetaert et al., 2010) <doi:10.18637/jss.v033.i09>.
Author: Dustin F. Kapraun [aut, cre] ,
Todd J. Zurlinden [aut] ,
Andrew J. Shapiro [aut] ,
Ryan D. Friese [aut] ,
Frederic Y. Bois [ctb] ,
Free Software Foundation, Inc. [cph]
Maintainer: Dustin F. Kapraun <kapraun.dustin@epa.gov>
Diff between MCSimMod versions 0.9 dated 2025-04-10 and 0.9.1 dated 2025-04-17
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- inst/doc/events_demo.html | 8 ++++---- inst/doc/exponential_demo.html | 8 ++++---- inst/doc/inputs_demo.html | 8 ++++---- inst/doc/newt_cool_demo.html | 8 ++++---- inst/doc/pk1_demo.html | 4 ++-- inst/doc/pred_prey_demo.html | 8 ++++---- inst/doc/quickstart.html | 8 ++++---- src/modiSBML.c | 13 +++++++++---- 10 files changed, 47 insertions(+), 42 deletions(-)
Title: Heteroskedasticity Robust Testing
Description: Functions for testing affine hypotheses on the regression coefficient vector in regression models with heteroskedastic errors: (i) a function for computing various test statistics (in particular using HC0-HC4 covariance estimators based on unrestricted or restricted residuals); (ii) a function for numerically approximating the size of a test based on such test statistics and a user-supplied critical value; and, most importantly, (iii) a function for determining size-controlling critical values for such test statistics and a user-supplied significance level (also incorporating a check of conditions under which such a size-controlling critical value exists). The three functions are based on results in Poetscher and Preinerstorfer (2021) "Valid Heteroskedasticity Robust Testing" <doi:10.48550/arXiv.2104.12597>, which will appear as <doi:10.1017/S0266466623000269>.
Author: David Preinerstorfer [aut, cre]
Maintainer: David Preinerstorfer <david.preinerstorfer@wu.ac.at>
Diff between hrt versions 1.0.1 dated 2021-09-08 and 1.0.2 dated 2025-04-17
DESCRIPTION | 16 +++++++++------- MD5 | 14 +++++++------- NEWS | 6 ++++++ R/zzz.R | 2 +- build/partial.rdb |binary inst/CITATION | 27 ++++++++------------------- man/critical.value.Rd | 6 +++--- man/size.Rd | 6 +++--- 8 files changed, 37 insertions(+), 40 deletions(-)
Title: Classification and Clustering of Preference Rankings
Description: Tree-based classification and soft-clustering method for preference rankings, with tools for external validation of fuzzy clustering, and Kemeny-equivalent augmented unfolding.
It contains the recursive partitioning algorithm for preference rankings, non-parametric tree-based method for a matrix of preference rankings as a response variable. It contains also the distribution-free soft clustering method for preference rankings, namely the K-median cluster component analysis (CCA).
The package depends on the 'ConsRank' R package.
Options for validate the tree-based method are both test-set procedure and V-fold cross validation.
The package contains the routines to compute the adjusted concordance index (a fuzzy version of the adjusted rand index) and the normalized degree of concordance (the corresponding fuzzy version of the rand index).
The package also contains routines to perform the Kemeny-equivalent augmented unfolding. The mds endine is the function 'sacofSym' from the package 'sm [...truncated...]
Author: Antonio D'Ambrosio [aut, cre]
Maintainer: Antonio D'Ambrosio <antdambr@unina.it>
Diff between ConsRankClass versions 1.0.1 dated 2021-09-28 and 1.0.2 dated 2025-04-17
DESCRIPTION | 21 ++++++++++++--------- MD5 | 24 +++++++++++++++++++----- NAMESPACE | 10 ++++++++++ R/augmatrix.R |only R/kunfolding.R |only R/mdscontrol.R |only R/plot.kunfolding.R |only R/print.kunfolding.R |only R/summary.kunfolding.R |only R/validatetree.R | 22 +++++++++++----------- R/vecTaux.R |only man/Univranks.Rd | 18 ++++++++++++++++-- man/augmatrix.Rd |only man/kunfolding.Rd |only man/mdscontrol.Rd |only man/plot.kunfolding.Rd |only man/print.kunfolding.Rd |only man/summary.kunfolding.Rd |only man/validatetree.Rd | 8 ++++---- man/vecTaux.Rd |only 20 files changed, 72 insertions(+), 31 deletions(-)
Title: Execute 'SQL' Scripts in 'R' Containing Multiple Queries
Description: The nature of working with structured query language ('SQL') scripts
efficiently often requires the creation of temporary tables and there
are few clean and simple 'R' 'SQL' execution approaches that allow
you to complete this kind of work with the 'R' environment. This
package seeks to give 'SQL' implementations in 'R' a little love
by deploying functions that allow you to deploy complex 'SQL'
scripts within a typical 'R' workflow.
Author: Kerns Sam [aut, cre]
Maintainer: Kerns Sam <samwkerns@gmail.com>
Diff between SQLove versions 1.0.1 dated 2025-04-10 and 1.0.2 dated 2025-04-17
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/dbGetMultiQuery.R | 42 +++++++++++++++++++++++++++++++----------- R/dbSendMultiUpdate.R | 34 ++++++++++++++++++++++++++-------- inst/doc/SQLove.Rmd | 4 ++-- inst/doc/SQLove.html | 41 +++++++++++++++++++++-------------------- man/dbGetMultiQuery.Rd | 12 +++++++----- man/dbSendMultiUpdate.Rd | 8 +++++--- vignettes/SQLove.Rmd | 4 ++-- 10 files changed, 111 insertions(+), 64 deletions(-)
Title: Fit Rank-Ordered Logit (RO-Logit) Model
Description: Implements the rank-ordered logit (RO-logit) model for stratified
analysis of continuous outcomes introduced by
Tan et al. (2017) <doi:10.1177/0962280217747309>. Model diagnostics based on
the heuristic residuals and estimates in linear scales are available from
the package, and outcomes with ties are supported.
Author: Chuen Seng Tan [aut],
Yilin Ning [aut, cre]
Maintainer: Yilin Ning <ningyilinnyl@gmail.com>
Diff between ROlogit versions 0.1.2 dated 2018-03-19 and 0.1.3 dated 2025-04-17
ROlogit-0.1.2/ROlogit/data/inpat_bg.RData |only ROlogit-0.1.2/ROlogit/inst |only ROlogit-0.1.3/ROlogit/DESCRIPTION | 16 ROlogit-0.1.3/ROlogit/MD5 | 12 ROlogit-0.1.3/ROlogit/NEWS.md |only ROlogit-0.1.3/ROlogit/R/ROlogit.R | 688 +++++++++++++++--------------- ROlogit-0.1.3/ROlogit/data/inpat_bg.rda |only ROlogit-0.1.3/ROlogit/man/inpat_bg.Rd | 6 ROlogit-0.1.3/ROlogit/man/rologit.Rd | 16 9 files changed, 377 insertions(+), 361 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between recipes versions 1.2.1 dated 2025-03-25 and 1.3.0 dated 2025-04-17
DESCRIPTION | 12 MD5 | 804 ++++++++++++++-------------- NAMESPACE | 2 NEWS.md | 57 + R/BoxCox.R | 50 - R/YeoJohnson.R | 45 - R/arrange.R | 17 R/bin2factor.R | 24 R/bs.R | 35 - R/case_weights.R | 20 R/center.R | 45 - R/class.R | 40 - R/classdist.R | 75 +- R/classdist_shrunken.R | 57 + R/colcheck.R | 25 R/corr.R | 49 - R/count.R | 31 - R/cut.R | 28 R/date.R | 62 -- R/deprec-misc.R |only R/depth.R | 101 +-- R/developer.R | 25 R/discretize.R | 88 +-- R/dummy.R | 170 ++++- R/dummy_extract.R | 33 - R/dummy_multi_choice.R | 7 R/extension_check.R | 5 R/extract_fit_time.R | 4 R/factor2string.R | 6 R/filter.R | 18 R/filter_missing.R | 16 R/formula.R | 5 R/geodist.R | 47 + R/get_types_recipes.R | 18 R/harmonic.R | 101 +-- R/holiday.R | 13 R/hyperbolic.R | 4 R/ica.R | 56 - R/impute_bag.R | 173 +++--- R/impute_knn.R | 131 ++-- R/impute_linear.R | 38 - R/impute_lower.R | 17 R/impute_mean.R | 20 R/impute_median.R | 16 R/impute_mode.R | 27 R/impute_roll.R | 44 - R/indicate_na.R | 6 R/integer.R | 39 - R/interact.R | 83 +- R/intercept.R | 8 R/inverse.R | 4 R/invlogit.R | 11 R/isomap.R | 96 +-- R/kpca.R | 32 - R/kpca_poly.R | 17 R/kpca_rbf.R | 20 R/lag.R | 12 R/lincomb.R | 17 R/log.R | 10 R/logit.R | 14 R/misc.R | 347 +++++++++--- R/missing.R | 44 - R/mutate.R | 35 - R/mutate_at.R | 19 R/naomit.R | 4 R/newvalues.R | 24 R/nnmf.R | 45 - R/nnmf_sparse.R | 52 - R/normalize.R | 20 R/novel.R | 32 - R/ns.R | 32 - R/num2factor.R | 21 R/nzv.R | 41 - R/ordinalscore.R | 19 R/other.R | 49 - R/pca.R | 67 +- R/percentile.R | 7 R/pkg_check.R | 6 R/pls.R | 36 - R/poly.R | 4 R/poly_bernstein.R | 19 R/prepper.R | 18 R/printing.R | 9 R/profile.R | 70 +- R/ptype.R | 20 R/range.R | 22 R/range_check.R | 48 - R/ratio.R | 50 - R/recipe.R | 84 +- R/recipes-package.R | 29 - R/regex.R | 27 R/relevel.R | 17 R/relu.R | 23 R/rename.R | 12 R/rename_at.R | 5 R/rm.R | 6 R/roles.R | 21 R/sample.R | 10 R/scale.R | 27 R/select.R | 31 - R/selections.R | 180 +++--- R/slice.R | 14 R/sparsevctrs.R | 29 - R/spatialsign.R | 46 - R/spline_b.R | 39 - R/spline_convex.R | 23 R/spline_helpers.R | 31 - R/spline_monotone.R | 26 R/spline_natural.R | 26 R/spline_nonnegative.R | 21 R/steps_and_checks.R | 14 R/string2factor.R | 49 - R/tidy.R | 37 - R/time.R | 35 - R/tune_args.R | 11 R/unknown.R | 22 R/unorder.R | 4 R/update-role-requirements.R | 23 R/update.R | 5 R/window.R | 56 - R/zv.R | 15 inst/doc/Dummies.R | 19 inst/doc/Dummies.Rmd | 24 inst/doc/Dummies.html | 302 +++++----- inst/doc/Roles.html | 9 inst/doc/Selecting_Variables.html | 7 inst/doc/Skipping.html | 5 inst/doc/recipes.html | 39 - man/add_step.Rd | 4 man/bake.Rd | 6 man/case-weight-helpers.Rd | 13 man/case_weights.Rd | 4 man/check_class.Rd | 71 +- man/check_cols.Rd | 44 - man/check_missing.Rd | 40 - man/check_name.Rd | 14 man/check_new_data.Rd | 4 man/check_new_values.Rd | 44 - man/check_options.Rd |only man/check_range.Rd | 63 +- man/check_type.Rd | 14 man/developer_functions.Rd | 23 man/discretize.Rd | 78 +- man/dot-recipes_estimate_sparsity.Rd | 10 man/formula.recipe.Rd | 5 man/get_data_types.Rd | 18 man/has_role.Rd | 8 man/juice.Rd | 6 man/names0.Rd | 33 - man/prep.Rd | 6 man/prepare.Rd |only man/prepper.Rd | 17 man/recipe.Rd | 88 ++- man/recipes-internal.Rd | 14 man/recipes.Rd | 27 man/recipes_argument_select.Rd |only man/recipes_eval_select.Rd | 22 man/recipes_extension_check.Rd | 4 man/recipes_pkg_check.Rd | 5 man/recipes_ptype.Rd | 18 man/remove_original_cols.Rd | 3 man/rmd/recipes.Rmd | 34 + man/roles.Rd | 20 man/selections.Rd | 92 +-- man/sparse_data.Rd | 14 man/step.Rd | 10 man/step_BoxCox.Rd | 70 +- man/step_YeoJohnson.Rd | 68 +- man/step_arrange.Rd | 37 - man/step_bin2factor.Rd | 48 - man/step_bs.Rd | 56 - man/step_center.Rd | 49 - man/step_classdist.Rd | 80 +- man/step_classdist_shrunken.Rd | 80 +- man/step_corr.Rd | 83 +- man/step_count.Rd | 53 - man/step_cut.Rd | 42 - man/step_date.Rd | 80 +- man/step_depth.Rd | 113 +-- man/step_discretize.Rd | 30 - man/step_dummy.Rd | 77 +- man/step_dummy_extract.Rd | 66 +- man/step_dummy_multi_choice.Rd | 36 - man/step_factor2string.Rd | 32 - man/step_filter.Rd | 27 man/step_filter_missing.Rd | 42 - man/step_geodist.Rd | 46 - man/step_harmonic.Rd | 84 +- man/step_holiday.Rd | 40 - man/step_hyperbolic.Rd | 30 - man/step_ica.Rd | 78 +- man/step_impute_bag.Rd | 63 +- man/step_impute_knn.Rd | 47 - man/step_impute_linear.Rd | 57 - man/step_impute_lower.Rd | 41 - man/step_impute_mean.Rd | 36 - man/step_impute_median.Rd | 40 - man/step_impute_mode.Rd | 39 - man/step_impute_roll.Rd | 52 - man/step_indicate_na.Rd | 31 - man/step_integer.Rd | 61 +- man/step_interact.Rd | 91 +-- man/step_intercept.Rd | 27 man/step_inverse.Rd | 30 - man/step_invlogit.Rd | 31 - man/step_isomap.Rd | 77 +- man/step_kpca.Rd | 51 - man/step_kpca_poly.Rd | 44 - man/step_kpca_rbf.Rd | 48 - man/step_lag.Rd | 35 - man/step_lincomb.Rd | 41 - man/step_log.Rd | 38 - man/step_logit.Rd | 34 - man/step_mutate.Rd | 52 + man/step_mutate_at.Rd | 34 - man/step_naomit.Rd | 12 man/step_nnmf.Rd | 60 +- man/step_nnmf_sparse.Rd | 41 - man/step_normalize.Rd | 36 - man/step_novel.Rd | 56 - man/step_ns.Rd | 56 - man/step_num2factor.Rd | 43 - man/step_nzv.Rd | 63 +- man/step_ordinalscore.Rd | 43 - man/step_other.Rd | 71 +- man/step_pca.Rd | 83 +- man/step_percentile.Rd | 31 - man/step_pls.Rd | 50 - man/step_poly.Rd | 27 man/step_poly_bernstein.Rd | 44 - man/step_profile.Rd | 90 +-- man/step_range.Rd | 48 - man/step_ratio.Rd | 52 - man/step_regex.Rd | 55 - man/step_relevel.Rd | 49 - man/step_relu.Rd | 50 - man/step_rename.Rd | 31 - man/step_rename_at.Rd | 32 - man/step_rm.Rd | 36 - man/step_sample.Rd | 19 man/step_scale.Rd | 53 - man/step_select.Rd | 46 - man/step_shuffle.Rd | 26 man/step_slice.Rd | 23 man/step_spatialsign.Rd | 58 -- man/step_spline_b.Rd | 51 - man/step_spline_convex.Rd | 47 - man/step_spline_monotone.Rd | 51 - man/step_spline_natural.Rd | 50 - man/step_spline_nonnegative.Rd | 51 - man/step_sqrt.Rd | 26 man/step_string2factor.Rd | 76 +- man/step_time.Rd | 46 - man/step_unknown.Rd | 52 - man/step_unorder.Rd | 26 man/step_window.Rd | 72 +- man/step_zv.Rd | 47 - man/summary.recipe.Rd | 11 man/tidy.recipe.Rd | 37 - man/update.step.Rd | 4 man/update_role_requirements.Rd | 22 tests/testthat/_snaps/basics.md | 14 tests/testthat/_snaps/bs.md | 9 tests/testthat/_snaps/classdist.md | 17 tests/testthat/_snaps/classdist_shrunken.md | 18 tests/testthat/_snaps/count.md | 10 tests/testthat/_snaps/cut.md | 42 + tests/testthat/_snaps/depth.md | 59 +- tests/testthat/_snaps/discretize.md | 9 tests/testthat/_snaps/dummy.md | 59 ++ tests/testthat/_snaps/factor2string.md | 3 tests/testthat/_snaps/geodist.md | 2 tests/testthat/_snaps/ica.md | 15 tests/testthat/_snaps/impute_bag.md | 43 + tests/testthat/_snaps/impute_knn.md | 39 + tests/testthat/_snaps/impute_linear.md | 24 tests/testthat/_snaps/interact.md | 4 tests/testthat/_snaps/isomap.md | 14 tests/testthat/_snaps/kpca.md | 14 tests/testthat/_snaps/kpca_poly.md | 5 tests/testthat/_snaps/kpca_rbf.md | 5 tests/testthat/_snaps/misc.md | 239 +++++++- tests/testthat/_snaps/nnmf_sparse.md | 15 tests/testthat/_snaps/ns.md | 9 tests/testthat/_snaps/other.md | 2 tests/testthat/_snaps/pca.md | 9 tests/testthat/_snaps/percentile.md | 9 tests/testthat/_snaps/pls.md | 41 + tests/testthat/_snaps/poly.md | 17 tests/testthat/_snaps/poly_bernstein.md | 10 tests/testthat/_snaps/profile.md | 28 tests/testthat/_snaps/ratio.md | 12 tests/testthat/_snaps/regex.md | 9 tests/testthat/_snaps/select.md | 9 tests/testthat/_snaps/spline_b.md | 20 tests/testthat/_snaps/spline_convex.md | 21 tests/testthat/_snaps/spline_monotone.md | 11 tests/testthat/_snaps/spline_natural.md | 21 tests/testthat/_snaps/spline_nonnegative.md | 21 tests/testthat/_snaps/stringsAsFactors.md | 20 tests/testthat/test-BoxCox.R | 16 tests/testthat/test-YeoJohnson.R | 16 tests/testthat/test-arrange.R | 16 tests/testthat/test-bake.R | 16 tests/testthat/test-basics.R | 414 ++++++++++++++ tests/testthat/test-bin2factor.R | 16 tests/testthat/test-bs.R | 25 tests/testthat/test-center.R | 16 tests/testthat/test-class.R | 40 + tests/testthat/test-classdist.R | 87 ++- tests/testthat/test-classdist_shrunken.R | 79 ++ tests/testthat/test-colcheck.R | 16 tests/testthat/test-corr.R | 16 tests/testthat/test-count.R | 25 tests/testthat/test-cut.R | 41 + tests/testthat/test-date.R | 16 tests/testthat/test-depth.R | 124 +++- tests/testthat/test-discretize.R | 50 + tests/testthat/test-dummy.R | 222 ++++++- tests/testthat/test-dummy_extract.R | 16 tests/testthat/test-dummy_multi_choice.R | 16 tests/testthat/test-extract_fit_time.R | 21 tests/testthat/test-factor2string.R | 30 - tests/testthat/test-filter.R | 16 tests/testthat/test-filter_missing.R | 16 tests/testthat/test-formula.R | 41 + tests/testthat/test-geodist.R | 24 tests/testthat/test-harmonic.R | 16 tests/testthat/test-holiday.R | 16 tests/testthat/test-hyperbolic.R | 16 tests/testthat/test-ica.R | 33 + tests/testthat/test-impute_bag.R | 101 +++ tests/testthat/test-impute_knn.R | 124 +++- tests/testthat/test-impute_linear.R | 77 ++ tests/testthat/test-impute_lower.R | 16 tests/testthat/test-impute_mean.R | 16 tests/testthat/test-impute_median.R | 16 tests/testthat/test-impute_mode.R | 16 tests/testthat/test-impute_roll.R | 16 tests/testthat/test-indicate_na.R | 16 tests/testthat/test-integer.R | 16 tests/testthat/test-interact.R | 41 + tests/testthat/test-intercept.R | 16 tests/testthat/test-inverse.R | 16 tests/testthat/test-invlogit.R | 16 tests/testthat/test-isomap.R | 39 + tests/testthat/test-kpca.R | 29 + tests/testthat/test-kpca_poly.R | 18 tests/testthat/test-kpca_rbf.R | 18 tests/testthat/test-lag.R | 16 tests/testthat/test-lincomb.R | 29 + tests/testthat/test-log.R | 16 tests/testthat/test-logit.R | 16 tests/testthat/test-misc.R | 231 +++++++- tests/testthat/test-missing.R | 16 tests/testthat/test-mutate.R | 16 tests/testthat/test-mutate_at.R | 16 tests/testthat/test-naomit.R | 16 tests/testthat/test-newvalues.R | 20 tests/testthat/test-nnmf_sparse.R | 48 + tests/testthat/test-normalize.R | 16 tests/testthat/test-novel.R | 24 tests/testthat/test-ns.R | 25 tests/testthat/test-num2factor.R | 16 tests/testthat/test-nzv.R | 16 tests/testthat/test-ordinalscore.R | 26 tests/testthat/test-other.R | 30 - tests/testthat/test-pca.R | 25 tests/testthat/test-percentile.R | 25 tests/testthat/test-pls.R | 112 +++ tests/testthat/test-poly.R | 25 tests/testthat/test-poly_bernstein.R | 29 + tests/testthat/test-profile.R | 72 +- tests/testthat/test-range.R | 16 tests/testthat/test-range_check.R | 16 tests/testthat/test-ratio.R | 83 ++ tests/testthat/test-regex.R | 25 tests/testthat/test-relevel.R | 16 tests/testthat/test-relu.R | 16 tests/testthat/test-rename.R | 16 tests/testthat/test-rename_at.R | 16 tests/testthat/test-rm.R | 16 tests/testthat/test-sample.R | 16 tests/testthat/test-scale.R | 16 tests/testthat/test-select.R | 47 + tests/testthat/test-selections.R | 4 tests/testthat/test-shuffle.R | 18 tests/testthat/test-skipping.R | 3 tests/testthat/test-slice.R | 16 tests/testthat/test-spatialsign.R | 16 tests/testthat/test-spline_b.R | 41 + tests/testthat/test-spline_convex.R | 41 + tests/testthat/test-spline_monotone.R | 30 + tests/testthat/test-spline_natural.R | 41 + tests/testthat/test-spline_nonnegative.R | 41 + tests/testthat/test-sqrt.R | 16 tests/testthat/test-string2factor.R | 29 - tests/testthat/test-stringsAsFactors.R | 53 + tests/testthat/test-time.R | 22 tests/testthat/test-tune_args.R | 44 + tests/testthat/test-unknown.R | 16 tests/testthat/test-unorder.R | 18 tests/testthat/test-window.R | 6 tests/testthat/test-zv.R | 16 vignettes/Dummies.Rmd | 24 405 files changed, 10039 insertions(+), 5752 deletions(-)
Title: Ecological Trajectory Analysis
Description: Assists ecologists in the analysis of temporal changes of
ecosystems, defined as trajectories on a chosen multivariate space, by providing a set of
trajectory metrics and visual representations [De Caceres et al. (2019) <doi:10.1002/ecm.1350>;
and Sturbois et al. (2021) <doi:10.1016/j.ecolmodel.2020.109400>]. Includes functions
to estimate metrics for individual trajectories (length, directionality, angles, ...) as well as
metrics to relate pairs of trajectories (dissimilarity and convergence). Functions are also
provided to estimate the ecological quality of ecosystem with respect to reference conditions
[Sturbois et al. (2023) <doi:10.1002/ecs2.4726>].
Author: Miquel De Caceres [aut, cre] ,
Nicolas Djeghri [aut] ,
Anthony Sturbois [aut] ,
Javier De la Casa [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between ecotraj versions 0.1.1 dated 2023-10-30 and 1.0.0 dated 2025-04-17
ecotraj-0.1.1/ecotraj/R/trajectoryUtils.R |only ecotraj-0.1.1/ecotraj/man/trajectorymetrics.Rd |only ecotraj-0.1.1/ecotraj/man/trajectoryplots.Rd |only ecotraj-0.1.1/ecotraj/man/trajectoryutils.Rd |only ecotraj-1.0.0/ecotraj/DESCRIPTION | 23 ecotraj-1.0.0/ecotraj/MD5 | 64 ecotraj-1.0.0/ecotraj/NAMESPACE | 24 ecotraj-1.0.0/ecotraj/NEWS.md |only ecotraj-1.0.0/ecotraj/R/RcppExports.R | 12 ecotraj-1.0.0/ecotraj/R/defineTrajectories.R |only ecotraj-1.0.0/ecotraj/R/documentationCETA.R |only ecotraj-1.0.0/ecotraj/R/documentationEQA.R | 6 ecotraj-1.0.0/ecotraj/R/ecotraj-package.R | 17 ecotraj-1.0.0/ecotraj/R/is.metric.R |only ecotraj-1.0.0/ecotraj/R/referenceEnvelopes.R | 95 - ecotraj-1.0.0/ecotraj/R/subsetTrajectories.R |only ecotraj-1.0.0/ecotraj/R/trajectoryComparison.R |only ecotraj-1.0.0/ecotraj/R/trajectoryCyclical.R |only ecotraj-1.0.0/ecotraj/R/trajectoryCyclicalPlots.R |only ecotraj-1.0.0/ecotraj/R/trajectoryMetrics.R | 888 ++++------ ecotraj-1.0.0/ecotraj/R/trajectoryPlots.R | 176 + ecotraj-1.0.0/ecotraj/R/trajectoryProjection.R |only ecotraj-1.0.0/ecotraj/R/trajectorySections.R |only ecotraj-1.0.0/ecotraj/R/transformTrajectories.R |only ecotraj-1.0.0/ecotraj/build/partial.rdb |binary ecotraj-1.0.0/ecotraj/data/northseaZoo.rda |only ecotraj-1.0.0/ecotraj/man/defineTrajectories.Rd |only ecotraj-1.0.0/ecotraj/man/ecotraj-package.Rd | 11 ecotraj-1.0.0/ecotraj/man/figures |only ecotraj-1.0.0/ecotraj/man/glenan.Rd | 2 ecotraj-1.0.0/ecotraj/man/glomel.Rd | 4 ecotraj-1.0.0/ecotraj/man/is.metric.Rd |only ecotraj-1.0.0/ecotraj/man/northseaZoo.Rd |only ecotraj-1.0.0/ecotraj/man/referenceEnvelopes.Rd | 16 ecotraj-1.0.0/ecotraj/man/subsetTrajectories.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryComparison.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryCyclical.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryCyclicalPlots.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryMetrics.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryPlot.Rd |only ecotraj-1.0.0/ecotraj/man/trajectoryProjection.Rd |only ecotraj-1.0.0/ecotraj/man/trajectorySections.Rd |only ecotraj-1.0.0/ecotraj/man/transformTrajectories.Rd |only ecotraj-1.0.0/ecotraj/src/RcppExports.cpp | 42 ecotraj-1.0.0/ecotraj/src/trajectories.cpp | 98 + ecotraj-1.0.0/ecotraj/tests/testthat/test_CETA.R |only ecotraj-1.0.0/ecotraj/tests/testthat/test_EQA.R | 5 ecotraj-1.0.0/ecotraj/tests/testthat/test_ETA.R |only ecotraj-1.0.0/ecotraj/tests/testthat/test_TrajectoryDefinition.R |only 49 files changed, 794 insertions(+), 689 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-11 0.1.0
2020-11-20 0.0.1
Title: Semi-Supervised Gaussian Mixture Model with a Missing-Data
Mechanism
Description: The algorithm of semi-supervised learning is based on finite Gaussian mixture models and includes a mechanism for handling missing data. It aims to fit a g-class Gaussian mixture model using maximum likelihood. The algorithm treats the labels of unclassified features as missing data, building on the framework introduced by Rubin (1976) <doi:10.2307/2335739> for missing data analysis. By taking into account the dependencies in the missing pattern, the algorithm provides more information for determining the optimal classifier, as specified by Bayes' rule.
Author: Ziyang Lyu [aut, cre],
Daniel Ahfock [aut],
Ryan Thompson [aut],
Geoffrey J. McLachlan [aut]
Maintainer: Ziyang Lyu <ziyang.lyu@unsw.edu.au>
Diff between gmmsslm versions 1.1.5 dated 2023-10-16 and 1.1.6 dated 2025-04-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/gmmsslm.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models.
Estimation of the association parameter in copula models.
Two different ways to estimate the association parameter in copula models are implemented.
A goodness-of-fit test for a given copula model is implemented.
See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura [aut, cre]
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.surv versions 1.9 dated 2025-03-27 and 2.0 dated 2025-04-17
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ R/Weib.reg.BB1.R | 2 +- R/Weib.reg.cBB1.0.R | 3 +-- R/Weib.reg.cBB1.R |only man/Weib.reg.BB1.0.Rd | 3 +++ man/Weib.reg.BB1.Rd | 3 +++ man/Weib.reg.cBB1.0.Rd | 3 +++ man/Weib.reg.cBB1.Rd |only 9 files changed, 23 insertions(+), 13 deletions(-)
Title: Weighted and Unweighted Spatial Centers
Description: Generate mean and median weighted or unweighted spatial centers.
Functions are analogous to their identically named counterparts within
'ArcGIS Pro'. Median center methodology based off of Kuhn and Kuenne
(1962) <doi:10.1111/j.1467-9787.1962.tb00902.x>.
Author: Ryan Zomorrodi [aut, cre, cph]
Maintainer: Ryan Zomorrodi <rzomor2@uic.edu>
Diff between centr versions 0.2.3 dated 2025-03-16 and 0.2.4 dated 2025-04-17
DESCRIPTION | 8 ++-- MD5 | 21 ++++++----- NEWS.md | 3 + R/mean_center.R | 16 ++++----- R/median_center.R | 12 +++--- inst/doc/typical_usage.R | 35 ++++++++++++++++--- inst/doc/typical_usage.Rmd | 34 ++++++++++++++++--- inst/doc/typical_usage.html | 64 ++++++++++++++++++++++-------------- tests/testthat/test-mean_center.R | 26 +++++++++++++- tests/testthat/test-median_center.R | 12 ++++++ vignettes/files |only vignettes/typical_usage.Rmd | 34 ++++++++++++++++--- 12 files changed, 195 insertions(+), 70 deletions(-)