Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2024)
<doi:10.48550/arXiv.2401.10193> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.0.1 dated 2025-03-21 and 1.1.0 dated 2025-05-02
tinyVAST-1.0.1/tinyVAST/tests/testthat/Rplots.pdf |only tinyVAST-1.1.0/tinyVAST/DESCRIPTION | 21 tinyVAST-1.1.0/tinyVAST/MD5 | 69 +- tinyVAST-1.1.0/tinyVAST/NAMESPACE | 11 tinyVAST-1.1.0/tinyVAST/NEWS.md | 23 tinyVAST-1.1.0/tinyVAST/R/fit.R | 132 +++-- tinyVAST-1.1.0/tinyVAST/R/internal.R | 62 -- tinyVAST-1.1.0/tinyVAST/R/methods.R | 28 + tinyVAST-1.1.0/tinyVAST/R/predict.R | 28 - tinyVAST-1.1.0/tinyVAST/R/sfnetwork.R | 56 +- tinyVAST-1.1.0/tinyVAST/R/utility.R | 190 +++++++ tinyVAST-1.1.0/tinyVAST/inst/CITATION | 13 tinyVAST-1.1.0/tinyVAST/inst/doc/dsem.R | 4 tinyVAST-1.1.0/tinyVAST/inst/doc/dsem.Rmd | 4 tinyVAST-1.1.0/tinyVAST/inst/doc/dsem.html | 6 tinyVAST-1.1.0/tinyVAST/inst/doc/mgcv.html | 6 tinyVAST-1.1.0/tinyVAST/inst/doc/model-description.Rmd | 30 - tinyVAST-1.1.0/tinyVAST/inst/doc/model-description.html | 88 ++- tinyVAST-1.1.0/tinyVAST/inst/doc/multiple_data.R | 6 tinyVAST-1.1.0/tinyVAST/inst/doc/multiple_data.Rmd | 6 tinyVAST-1.1.0/tinyVAST/inst/doc/multiple_data.html | 6 tinyVAST-1.1.0/tinyVAST/inst/doc/spatial.html | 2 tinyVAST-1.1.0/tinyVAST/inst/doc/spatial_factor_analysis.html | 2 tinyVAST-1.1.0/tinyVAST/man/GetResponse.tinyVAST.Rd |only tinyVAST-1.1.0/tinyVAST/man/get_data.tinyVAST.Rd |only tinyVAST-1.1.0/tinyVAST/man/predict.tinyVAST.Rd | 3 tinyVAST-1.1.0/tinyVAST/man/term_covariance.Rd |only tinyVAST-1.1.0/tinyVAST/man/tinyVAST.Rd | 8 tinyVAST-1.1.0/tinyVAST/man/tinyVASTcontrol.Rd | 10 tinyVAST-1.1.0/tinyVAST/src/tinyVAST.cpp | 259 ++++++++-- tinyVAST-1.1.0/tinyVAST/tests/testthat/test-basic-fits.R | 36 - tinyVAST-1.1.0/tinyVAST/tests/testthat/test-dsem.R |only tinyVAST-1.1.0/tinyVAST/tests/testthat/test-index-standardization.R | 45 + tinyVAST-1.1.0/tinyVAST/tests/testthat/test-sfnetworks.R | 15 tinyVAST-1.1.0/tinyVAST/tests/testthat/test-smooths.R | 93 ++- tinyVAST-1.1.0/tinyVAST/vignettes/dsem.Rmd | 4 tinyVAST-1.1.0/tinyVAST/vignettes/model-description.Rmd | 30 - tinyVAST-1.1.0/tinyVAST/vignettes/multiple_data.Rmd | 6 38 files changed, 1019 insertions(+), 283 deletions(-)
Title: Interact with 'Bluesky' Social
Description: Collect data from and make posts on 'Bluesky' Social
via the Hypertext Transfer Protocol (HTTP) Application Programming
Interface (API), as documented at <https://atproto.com/specs/xrpc>. This
further supports broader queries to the Authenticated Transfer (AT) Protocol
<https://atproto.com/> which 'Bluesky' Social relies on. Data is returned in a
tidy format and posts can be made using a simple interface.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between bskyr versions 0.2.0 dated 2025-02-08 and 0.3.0 dated 2025-05-02
DESCRIPTION | 18 LICENSE | 4 MD5 | 284 NAMESPACE | 3 NEWS.md | 10 R/actor_preferences.R | 88 R/auth.R | 214 R/bskyr-package.R | 14 R/created_at.R | 30 R/embed_external.R |only R/feed_feed_skeleton.R | 68 R/feed_get_posts.R | 130 R/feed_list_feed.R | 109 R/feed_quotes.R | 148 R/feed_search.R | 198 R/graph_actor_lists.R | 140 R/graph_actor_starter.R | 146 R/graph_list.R | 148 R/graph_relationships.R | 238 R/graph_search_starter_pack.R | 134 R/graph_starter_pack.R | 108 R/graph_starter_packs.R | 126 R/parse.R | 463 R/proc.R | 266 R/record_block.R | 92 R/record_delete_wrappers.R | 32 R/record_follow.R | 94 R/record_list.R | 176 R/record_list_item.R | 110 R/record_post.R | 579 R/record_repost.R | 118 R/record_starter_pack.R | 130 R/repo_create_record.R | 118 R/repo_delete_record.R | 110 R/repo_upload_blob.R | 6 R/roxygen.R | 258 R/url_uri.R | 138 R/utils.R | 4 R/video_get_upload_limits.R | 74 R/video_upload_video.R | 98 inst/CITATION | 36 inst/httptest2/redact.R | 8 man/bs_block.Rd | 96 man/bs_create_record.Rd | 122 man/bs_created_at.Rd | 46 man/bs_delete_block.Rd | 108 man/bs_delete_follow.Rd | 112 man/bs_delete_like.Rd | 108 man/bs_delete_list.Rd | 92 man/bs_delete_list_item.Rd | 96 man/bs_delete_post.Rd |only man/bs_delete_repost.Rd | 92 man/bs_delete_starter_pack.Rd | 92 man/bs_describe_repo.Rd | 94 man/bs_extract_record_key.Rd | 40 man/bs_follow.Rd | 96 man/bs_get_actor_starter_packs.Rd | 108 man/bs_get_actor_suggestions.Rd | 100 man/bs_get_author_feed.Rd | 106 man/bs_get_blocked_lists.Rd | 100 man/bs_get_blocks.Rd | 100 man/bs_get_feed.Rd | 106 man/bs_get_feed_generator.Rd | 100 man/bs_get_feed_generators.Rd | 108 man/bs_get_feed_suggestions.Rd | 100 man/bs_get_feeds.Rd | 106 man/bs_get_follow_suggestions.Rd | 94 man/bs_get_followers.Rd | 106 man/bs_get_follows.Rd | 106 man/bs_get_likes.Rd | 106 man/bs_get_list.Rd | 104 man/bs_get_list_feed.Rd |only man/bs_get_muted_lists.Rd | 88 man/bs_get_mutes.Rd | 100 man/bs_get_notification_count.Rd | 88 man/bs_get_notifications.Rd | 100 man/bs_get_post_likes.Rd | 106 man/bs_get_post_thread.Rd | 106 man/bs_get_preferences.Rd | 88 man/bs_get_profile.Rd | 98 man/bs_get_quotes.Rd | 112 man/bs_get_record.Rd | 106 man/bs_get_relationships.Rd | 100 man/bs_get_reposts.Rd | 106 man/bs_get_timeline.Rd | 100 man/bs_like.Rd | 96 man/bs_list_records.Rd | 112 man/bs_new_embed_external.Rd |only man/bs_new_list.Rd | 124 man/bs_new_starter_pack.Rd | 116 man/bs_post.Rd | 54 man/bs_repost.Rd | 96 man/bs_resolve_handle.Rd | 94 man/bs_search_actors.Rd | 114 man/bs_upload_blob.Rd | 96 man/bs_url_to_uri.Rd | 76 man/pass.Rd | 56 man/set_bluesky_pass.Rd | 64 man/set_bluesky_user.Rd | 64 man/user.Rd | 56 tests/testthat/setup.R | 22 tests/testthat/t/a/preferencesL/bsky.social/xrpc/app.bsky.actor.getPreferences.json | 30 tests/testthat/t/a/profile/bsky.social/xrpc/app.bsky.actor.getProfiles-f74ed2.json | 44 tests/testthat/t/a/search/bsky.social/xrpc/app.bsky.actor.searchActorsTypeahead-c4b5a2.json | 208 tests/testthat/t/a/sugg/bsky.social/xrpc/app.bsky.actor.getSuggestions.json | 878 tests/testthat/t/f/autfeed/bsky.social/xrpc/app.bsky.feed.getAuthorFeed-d3a6a5.json | 448 tests/testthat/t/f/feedfeed/bsky.social/xrpc/app.bsky.feed.getFeed-35f594.json |13064 ++++----- tests/testthat/t/f/feedfeeds/bsky.social/xrpc/app.bsky.feed.getActorFeeds-d3a6a5.json | 10 tests/testthat/t/f/feedgen/bsky.social/xrpc/app.bsky.feed.getFeedGenerator-35f594.json | 62 tests/testthat/t/f/getlikes/bsky.social/xrpc/app.bsky.feed.getActorLikes-d3a6a5.json | 562 tests/testthat/t/f/getposts/bsky.social/xrpc/app.bsky.feed.getPosts-e6010f.json | 186 tests/testthat/t/f/getquotes/bsky.social/xrpc/app.bsky.feed.getQuotes-af4016.json | 704 tests/testthat/t/f/postthread/bsky.social/xrpc/app.bsky.feed.getPostThread-37f3db.json | 200 tests/testthat/t/f/reposts/bsky.social/xrpc/app.bsky.feed.getRepostedBy-f5d562.json | 44 tests/testthat/t/f/search/bsky.social/xrpc/app.bsky.feed.searchPosts-5d343d.json | 3090 +- tests/testthat/t/f/sugg/bsky.social/xrpc/app.bsky.feed.getSuggestedFeeds.json | 1354 tests/testthat/t/f/timeline/bsky.social/xrpc/app.bsky.feed.getTimeline.json |13544 +++++----- tests/testthat/t/g/actorlist/bsky.social/xrpc/app.bsky.graph.getLists-d3a6a5.json | 10 tests/testthat/t/g/actorlists/bsky.social/xrpc/app.bsky.graph.getLists-d6d0e1.json | 226 tests/testthat/t/g/actorstart/bsky.social/xrpc/app.bsky.graph.getActorStarterPacks-d6d0e1.json | 248 tests/testthat/t/g/blockedlist/bsky.social/xrpc/app.bsky.graph.getListMutes.json | 10 tests/testthat/t/g/blocks/bsky.social/xrpc/app.bsky.graph.getBlocks.json | 10 tests/testthat/t/g/fs/bsky.social/xrpc/app.bsky.graph.getSuggestedFollowsByActor-d3a6a5.json | 1068 tests/testthat/t/g/getlist/bsky.social/xrpc/app.bsky.graph.getList-20f45a.json | 404 tests/testthat/t/g/start/bsky.social/xrpc/app.bsky.graph.getStarterPack-804f21.json | 500 tests/testthat/t/g/starts/bsky.social/xrpc/app.bsky.graph.getStarterPacks-b3f408.json | 90 tests/testthat/t/i/resolveh/bsky.social/xrpc/com.atproto.identity.resolveHandle-5a9f33.json | 6 tests/testthat/t/n/nc/bsky.social/xrpc/app.bsky.notification.getUnreadCount.json | 6 tests/testthat/t/n/ncL/bsky.social/xrpc/app.bsky.notification.getUnreadCount.json | 6 tests/testthat/t/o/url2uri/bsky.social/xrpc/com.atproto.identity.resolveHandle-5a9f33.json | 6 tests/testthat/t/r/descRepo/bsky.social/xrpc/com.atproto.repo.describeRepo-422451.json | 76 tests/testthat/t/r/descRepoL/bsky.social/xrpc/com.atproto.repo.describeRepo-422451.json | 76 tests/testthat/t/r/getRecord/bsky.social/xrpc/com.atproto.repo.getRecord-481193.json | 108 tests/testthat/t/r/listrcd/bsky.social/xrpc/com.atproto.repo.listRecords-1c5193.json | 308 tests/testthat/t/r/listrcdL/bsky.social/xrpc/com.atproto.repo.listRecords-1c5193.json | 308 tests/testthat/test-feed_quotes.R | 12 tests/testthat/test-graph_actor_starter.R | 12 tests/testthat/test-graph_list.R | 12 tests/testthat/test-graph_lists.R | 12 tests/testthat/test-graph_relationships.R | 12 tests/testthat/test-graph_starter_pack.R | 12 tests/testthat/test-graph_starter_packs.R | 12 tests/testthat/test-parse.R | 713 tests/testthat/test-record_like.R | 26 tests/testthat/test-record_post.R | 12 145 files changed, 24804 insertions(+), 24475 deletions(-)
Title: 'STK++' Core Library Integration to 'R' using 'Rcpp'
Description: 'STK++' <http://www.stkpp.org> is a collection of C++ classes
for statistics, clustering, linear algebra, arrays (with an 'Eigen'-like API),
regression, dimension reduction, etc. The integration of the library to 'R' is
using 'Rcpp'. The 'rtkore' package includes the header files from the 'STK++'
core library. All files contain only template classes and/or inline functions.
'STK++' is licensed under the GNU LGPL version 2 or later. 'rtkore' (the 'stkpp'
integration into 'R') is licensed under the GNU GPL version 2 or later. See file
LICENSE.note for details.
Author: Serge Iovleff [aut, cre],
Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff <serge.iovleff@stkpp.org>
Diff between rtkore versions 1.6.12 dated 2024-06-02 and 1.6.13 dated 2025-05-02
rtkore-1.6.12/rtkore/.Rinstignore |only rtkore-1.6.13/rtkore/DESCRIPTION | 8 - rtkore-1.6.13/rtkore/MD5 | 22 ++-- rtkore-1.6.13/rtkore/build/vignette.rds |binary rtkore-1.6.13/rtkore/inst/NEWS.Rd | 6 + rtkore-1.6.13/rtkore/inst/doc/rtkpp-Arrays.pdf |binary rtkore-1.6.13/rtkore/inst/doc/rtkpp-ArraysQuickRef.pdf |binary rtkore-1.6.13/rtkore/inst/doc/rtkpp-Introduction.pdf |binary rtkore-1.6.13/rtkore/inst/doc/rtkpp-Tips.pdf |binary rtkore-1.6.13/rtkore/inst/doc/rtkpp-Utilities.pdf |binary rtkore-1.6.13/rtkore/inst/projects/DManager/include/STK_ExportToCsv.h | 52 ++++++---- rtkore-1.6.13/rtkore/inst/projects/DManager/include/STK_ReadWriteCsv.h | 1 rtkore-1.6.13/rtkore/inst/projects/Sdk/include/STK_MacrosVersion.h | 2 13 files changed, 55 insertions(+), 36 deletions(-)
Title: Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Description: Memoization can be used to speed up repetitive and computational expensive function calls. The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.cache versions 0.16.0 dated 2022-07-21 and 0.17.0 dated 2025-05-02
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NEWS.md | 15 +++++++++++++++ R/999.package.R | 2 +- R/addCACHEDIR.TAG.R |only R/clearCache.R | 7 +++++-- R/getCachePath.R | 3 +++ R/getOSCacheRootPath.R | 9 ++++----- R/setCacheRootPath.R | 3 +++ inst/_Rcache/CACHEDIR.TAG |only man/R.cache-package.Rd | 2 +- 11 files changed, 46 insertions(+), 21 deletions(-)
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison (1982). Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.base versions 0.5.5 dated 2023-11-25 and 1.0.0 dated 2025-05-02
coda.base-0.5.5/coda.base/R/constrained_pb.R |only coda.base-0.5.5/coda.base/man/basis.Rd |only coda.base-0.5.5/coda.base/man/cbalance_approx.Rd |only coda.base-0.5.5/coda.base/man/cdp_basis.Rd |only coda.base-0.5.5/coda.base/man/print.coda.Rd |only coda.base-1.0.0/coda.base/DESCRIPTION | 15 coda.base-1.0.0/coda.base/MD5 | 64 +- coda.base-1.0.0/coda.base/NAMESPACE | 6 coda.base-1.0.0/coda.base/R/RcppExports.R | 4 coda.base-1.0.0/coda.base/R/basis.R | 239 ++++---- coda.base-1.0.0/coda.base/R/coordinates.R | 378 ++++--------- coda.base-1.0.0/coda.base/R/dendrogram.R | 50 - coda.base-1.0.0/coda.base/R/imputation-functions.R |only coda.base-1.0.0/coda.base/R/other.R | 42 - coda.base-1.0.0/coda.base/R/pb_basis_constrained.R |only coda.base-1.0.0/coda.base/R/utils.R | 3 coda.base-1.0.0/coda.base/R/zero_replacement_imputation.R |only coda.base-1.0.0/coda.base/README.md | 53 + coda.base-1.0.0/coda.base/build/vignette.rds |binary coda.base-1.0.0/coda.base/inst/doc/coordinates.R | 9 coda.base-1.0.0/coda.base/inst/doc/coordinates.Rmd | 20 coda.base-1.0.0/coda.base/inst/doc/coordinates.html | 354 +++++------- coda.base-1.0.0/coda.base/inst/doc/features.html | 8 coda.base-1.0.0/coda.base/inst/doc/principal_balances.R | 342 +++++------ coda.base-1.0.0/coda.base/inst/doc/principal_balances.html | 19 coda.base-1.0.0/coda.base/man/alr_basis.Rd | 5 coda.base-1.0.0/coda.base/man/cc_basis.Rd | 11 coda.base-1.0.0/coda.base/man/clr_basis.Rd | 3 coda.base-1.0.0/coda.base/man/coda.base.Rd | 2 coda.base-1.0.0/coda.base/man/coda_replacement.Rd |only coda.base-1.0.0/coda.base/man/composition.Rd | 4 coda.base-1.0.0/coda.base/man/coordinates.Rd | 20 coda.base-1.0.0/coda.base/man/ilr_basis.Rd | 28 coda.base-1.0.0/coda.base/man/pairwise_basis.Rd | 3 coda.base-1.0.0/coda.base/man/pb_basis.Rd | 11 coda.base-1.0.0/coda.base/src/RcppExports.cpp | 12 coda.base-1.0.0/coda.base/src/conditional_obasis.cpp |only coda.base-1.0.0/coda.base/vignettes/coordinates.Rmd | 20 38 files changed, 794 insertions(+), 931 deletions(-)
Title: 'WikiPathway' Based Data Integration and Visualization
Description: Queries online 'WikiPathway' graphics and allows mapping user data (e.g., expression values) on the graph. The package designs a grammar of graphic syntax that using pipe operator to add graphic layer.
Author: Guangchuang Yu [aut, cre, cph] ,
Yihao Chen [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between wikiprofiler versions 0.1.5 dated 2024-08-26 and 0.1.6 dated 2025-05-02
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/wpplot.R | 3 ++- man/wpplot.Rd | 3 ++- 4 files changed, 12 insertions(+), 10 deletions(-)
Title: The Phoenix Pediatric Sepsis and Septic Shock Criteria
Description: Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as
described in "Development and Validation of the Phoenix Criteria for
Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt,
Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto
and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr.
Russell contributed equally to the manuscript), "International Consensus
Criteria for Pediatric Sepsis and Septic Shock" by Schlapbach, Watson,
Sorce, Argent, et al. (2024) <doi:10.1001/jama.2024.0179> (Drs Schlapbach,
Watson, Sorce, and Argent contributed equally) and the application note
"phoenix: an R package and Python module for calculating the Phoenix
pediatric sepsis score and criteria" by DeWitt, Russell, Rebull,
Sanchez-Pinto, and Bennett (2024) <doi:10.1093/jamiaopen/ooae066>.
Author: Peter DeWitt [aut, cre] ,
Seth Russell [ctb] ,
Meg Rebull [ctb] ,
Tell Bennett [ctb] ,
L. Nelson Sanchez-Pinto [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between phoenix versions 1.1.1 dated 2024-07-08 and 1.1.2 dated 2025-05-02
DESCRIPTION | 22 + MD5 | 64 ++--- NEWS.md | 13 + R/map.R | 6 R/phoenix.R | 9 R/phoenix8.R | 17 - R/phoenix_cardiovascular.R | 18 - R/phoenix_coagulation.R | 8 R/phoenix_endocrine.R | 6 R/phoenix_hepatic.R | 7 R/phoenix_immunologic.R | 18 - R/phoenix_neurologic.R | 6 R/phoenix_renal.R | 4 R/phoenix_respiratory.R | 10 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/phoenix.Rmd | 23 + inst/doc/phoenix.html | 485 +++++++++++++++++++++--------------------- man/map.Rd | 6 man/phoenix.Rd | 9 man/phoenix8.Rd | 17 - man/phoenix_cardiovascular.Rd | 18 - man/phoenix_coagulation.Rd | 8 man/phoenix_endocrine.Rd | 6 man/phoenix_hepatic.Rd | 7 man/phoenix_immunologic.Rd | 14 - man/phoenix_neurologic.Rd | 6 man/phoenix_renal.Rd | 4 man/phoenix_respiratory.Rd | 10 tests/test-phoenix8.R | 9 vignettes/phoenix.Rmd | 23 + 33 files changed, 494 insertions(+), 363 deletions(-)
Title: Direct Parametric Inference for the Cumulative Incidence
Function in Competing Risks
Description: Implements parametric (Direct) regression methods for modeling cumulative incidence functions (CIFs) in
the presence of competing risks. Methods include the direct Gompertz-based approach
and generalized regression models as described in Jeong and Fine (2006) <doi:10.1111/j.1467-9876.2006.00532.x>
and Jeong and Fine (2007) <doi:10.1093/biostatistics/kxj040>.
The package facilitates maximum likelihood estimation, variance computation,
with applications to clinical trials and survival analysis.
Author: Habib Ezzatabadipour [aut, cre]
Maintainer: Habib Ezzatabadipour <habibezati@outlook.com>
Diff between cmpp versions 0.0.1 dated 2025-05-02 and 0.0.2 dated 2025-05-02
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/RCode.r | 24 ++++++++++++------------ man/F_cdf_rcpp.Rd | 2 +- man/F_cdf_rcpp2.Rd | 2 +- man/F_cdf_rcpp3.Rd | 2 +- man/f_pdf_rcpp.Rd | 2 +- man/f_pdf_rcpp2.Rd | 2 +- man/f_pdf_rcpp3.Rd | 2 +- src/CppCodes.cpp | 25 +++++++++++++++++++++++++ 10 files changed, 57 insertions(+), 32 deletions(-)
Title: Implementation of the Remote Procedure Call Protocol ('XML-RPC')
Description: The 'XML-RPC' is a remote procedure call protocol
based on 'XML'. The 'xmlrpc2' package is inspired by the 'XMLRPC'
package but uses the 'curl' and 'xml2' packages instead 'RCurl' and 'XML'.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between xmlrpc2 versions 1.1 dated 2018-08-23 and 1.2 dated 2025-05-02
DESCRIPTION | 13 +++++++------ MD5 | 15 ++++++++------- R/serialize.R | 31 ++++++++++++++++++++++++------- R/xmlrpc2.R | 33 ++++++++++++++++++++++++--------- README.md |only man/from_xmlrpc.Rd | 1 + man/rpc_serialize.Rd | 1 + man/to_xmlrpc.Rd | 11 ++++++++++- man/xmlrpc.Rd | 13 +++++++++++-- 9 files changed, 86 insertions(+), 32 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions II
Description: A collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions. References: Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Stefanos Fafalios [aut],
Marios Dimitriadis [aut],
Manos Lasithiotakis [aut],
Nikolaos Kontemeniotis [ctb]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast2 versions 0.1.5.3 dated 2025-04-08 and 0.1.5.4 dated 2025-05-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 15 ++++++++++++++- R/eqdist.etest.R | 3 ++- build/partial.rdb |binary man/eqdist.etest.Rd | 4 ++-- 6 files changed, 27 insertions(+), 13 deletions(-)
Title: R Object-Oriented Programming with or without References
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.oo versions 1.27.0 dated 2024-11-01 and 1.27.1 dated 2025-05-02
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 9 +++++++++ R/Rdoc.R | 2 +- 4 files changed, 18 insertions(+), 8 deletions(-)
Title: Simple Memory Profiling for R
Description: A simple and light-weight API for memory profiling of R expressions. The profiling is built on top of R's built-in memory profiler ('utils::Rprofmem()'), which records every memory allocation done by R (also native code).
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between profmem versions 0.6.0 dated 2020-12-13 and 0.7.0 dated 2025-05-02
profmem-0.6.0/profmem/NEWS |only profmem-0.7.0/profmem/DESCRIPTION | 12 profmem-0.7.0/profmem/MD5 | 22 - profmem-0.7.0/profmem/NEWS.md |only profmem-0.7.0/profmem/R/Rprofmem-class.R | 14 profmem-0.7.0/profmem/R/profmem.R | 15 - profmem-0.7.0/profmem/build/vignette.rds |binary profmem-0.7.0/profmem/inst/WORDLIST | 1 profmem-0.7.0/profmem/inst/doc/profmem.html | 364 ++++++++----------------- profmem-0.7.0/profmem/inst/doc/profmem.md.rsp | 4 profmem-0.7.0/profmem/man/profmem.Rd | 6 profmem-0.7.0/profmem/tests/profmem,error.R | 17 + profmem-0.7.0/profmem/vignettes/profmem.md.rsp | 4 13 files changed, 193 insertions(+), 266 deletions(-)
Title: Parametric Survival Simulation with Parameter Uncertainty
Description: Perform survival simulation with parametric survival model generated from 'survreg' function in 'survival' package.
In each simulation coefficients are resampled from variance-covariance matrix of parameter estimates to
capture uncertainty in model parameters.
Prediction intervals of Kaplan-Meier estimates and hazard ratio of treatment effect can be further calculated using simulated survival data.
Author: Kenta Yoshida [aut, cre] ,
Laurent Claret [aut]
Maintainer: Kenta Yoshida <yoshida.kenta.6@gmail.com>
Diff between survParamSim versions 0.1.6 dated 2022-06-03 and 0.1.7 dated 2025-05-02
survParamSim-0.1.6/survParamSim/build/survParamSim.pdf |only survParamSim-0.1.6/survParamSim/man/calc_hr_pi.Rd |only survParamSim-0.1.6/survParamSim/man/calc_km_pi.Rd |only survParamSim-0.1.7/survParamSim/DESCRIPTION | 25 survParamSim-0.1.7/survParamSim/MD5 | 73 - survParamSim-0.1.7/survParamSim/NAMESPACE | 2 survParamSim-0.1.7/survParamSim/NEWS.md | 9 survParamSim-0.1.7/survParamSim/R/calc_ave_hr_pi.R |only survParamSim-0.1.7/survParamSim/R/calc_ave_km_pi.R |only survParamSim-0.1.7/survParamSim/R/calc_hr_pi.R | 327 ++-- survParamSim-0.1.7/survParamSim/R/calc_km_pi.R | 182 +- survParamSim-0.1.7/survParamSim/R/extract_pi.R | 8 survParamSim-0.1.7/survParamSim/R/extract_raw_sim.R | 17 survParamSim-0.1.7/survParamSim/R/surv_param_sim.R | 22 survParamSim-0.1.7/survParamSim/R/surv_param_sim_pre_resampled.R | 9 survParamSim-0.1.7/survParamSim/R/surv_param_sim_resample.R | 13 survParamSim-0.1.7/survParamSim/R/surv_pdf_fun.R |only survParamSim-0.1.7/survParamSim/R/yyy.R | 3 survParamSim-0.1.7/survParamSim/README.md | 43 survParamSim-0.1.7/survParamSim/build/stage23.rdb |only survParamSim-0.1.7/survParamSim/build/vignette.rds |binary survParamSim-0.1.7/survParamSim/inst/doc/survParamSim.R | 2 survParamSim-0.1.7/survParamSim/inst/doc/survParamSim.Rmd | 13 survParamSim-0.1.7/survParamSim/inst/doc/survParamSim.html | 689 ++++++---- survParamSim-0.1.7/survParamSim/man/calculate_hr_pi.Rd |only survParamSim-0.1.7/survParamSim/man/calculate_km_pi.Rd |only survParamSim-0.1.7/survParamSim/man/extractrawsim.Rd | 6 survParamSim-0.1.7/survParamSim/man/figures/README-hr_pi-1.png |binary survParamSim-0.1.7/survParamSim/man/figures/README-km_pi_group-1.png |binary survParamSim-0.1.7/survParamSim/tests/testthat.R | 9 survParamSim-0.1.7/survParamSim/tests/testthat/_snaps |only survParamSim-0.1.7/survParamSim/tests/testthat/helper-utils.R | 4 survParamSim-0.1.7/survParamSim/tests/testthat/test-calc_ave_hr_pi.R |only survParamSim-0.1.7/survParamSim/tests/testthat/test-calc_ave_km_pi.R |only survParamSim-0.1.7/survParamSim/tests/testthat/test-calc_hr_pi.R | 13 survParamSim-0.1.7/survParamSim/tests/testthat/test-calc_km_pi.R | 10 survParamSim-0.1.7/survParamSim/tests/testthat/test-extract_raw_sim.R | 6 survParamSim-0.1.7/survParamSim/tests/testthat/test-surv_param_sim.R | 2 survParamSim-0.1.7/survParamSim/tests/testthat/test-surv_param_sim_pre_resampled.R | 12 survParamSim-0.1.7/survParamSim/tests/testthat/test-surv_param_sim_resample.R | 11 survParamSim-0.1.7/survParamSim/tests/testthat/test-surv_pdf_fun.R |only survParamSim-0.1.7/survParamSim/tests/testthat/test-survparamsim-methods.R | 2 survParamSim-0.1.7/survParamSim/vignettes/survParamSim.Rmd | 13 43 files changed, 955 insertions(+), 570 deletions(-)
Title: A Unified Time Series Event Detection Framework
Description: By analyzing time series, it is possible to observe significant changes in the behavior of observations that frequently characterize events. Events present themselves as anomalies, change points, or motifs. In the literature, there are several methods for detecting events. However, searching for a suitable time series method is a complex task, especially considering that the nature of events is often unknown. This work presents Harbinger, a framework for integrating and analyzing event detection methods. Harbinger contains several state-of-the-art methods described in Salles et al. (2020) <doi:10.5753/sbbd.2020.13626>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Antonio Castro [aut],
Antonio Mello [aut],
Ellen Paixao [aut],
Fernando Fraga [aut],
Heraldo Borges [aut],
Janio Lima [aut],
Jessica Souza [aut],
Lais Baroni [aut],
Lucas Tavares [aut],
Michel Reis [aut],
Rebecca S [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between harbinger versions 1.1.717 dated 2025-04-23 and 1.1.727 dated 2025-05-02
DESCRIPTION | 28 +++++---- MD5 | 52 ++++++++++-------- NAMESPACE | 14 ++++ R/han_autoencoder.R | 13 ++-- R/hanc_ml.R | 17 ++++- R/hanct_dtw.R | 8 ++ R/hanct_kmeans.R | 7 ++ R/hanr_emd.R | 3 + R/hanr_fft_amoc.R |only R/hanr_fft_amoc_cusum.R |only R/hanr_fft_binseg.R |only R/hanr_fft_binseg_cusum.R |only R/hanr_fft_sma.R |only R/hanr_garch.R | 8 +- R/hanr_ml.R | 5 + R/hanr_red.R | 121 +++++++++++++++--------------------------- R/har_ensemble.R | 24 +++++--- R/har_eval_soft.R | 115 +++++++++++++++++++++++++++------------ R/har_plot.R | 57 ++++++++++++------- R/harbinger.R | 7 +- R/harbinger_utils.R | 47 +++++++++------- R/hcp_garch.R | 10 ++- R/hcp_scp.R | 6 +- README.md | 2 data/examples_anomalies.RData |binary man/hanc_ml.Rd | 4 + man/hanr_fft_amoc.Rd |only man/hanr_fft_amoc_cusum.Rd |only man/hanr_fft_binseg.Rd |only man/hanr_fft_binseg_cusum.Rd |only man/hanr_fft_sma.Rd |only man/har_plot.Rd | 7 +- 32 files changed, 335 insertions(+), 220 deletions(-)
Title: A Comprehensive Toolkit for Fast and Efficient Spatial
Interpolation
Description: Spatial interpolation toolkit designed for environmental and geospatial applications. It includes a range of methods, from traditional techniques to advanced machine learning approaches, ensuring accurate and efficient estimation of values in unobserved locations.
Author: Jonnathan Landi [aut, cre, cph]
Maintainer: Jonnathan Landi <jonnathan.landi@outlook.com>
Diff between InterpolateR versions 1.2-0 dated 2025-04-02 and 1.3-4 dated 2025-05-02
InterpolateR-1.2-0/InterpolateR/R/validation_module.R |only InterpolateR-1.2-0/InterpolateR/data/BD_Coord.RData |only InterpolateR-1.2-0/InterpolateR/data/BD_Obs.RData |only InterpolateR-1.2-0/InterpolateR/inst/extdata/BD_Coord.csv |only InterpolateR-1.2-0/InterpolateR/inst/extdata/BD_Obs.csv |only InterpolateR-1.2-0/InterpolateR/inst/extdata/study_area.qmd |only InterpolateR-1.3-4/InterpolateR/DESCRIPTION | 22 InterpolateR-1.3-4/InterpolateR/MD5 | 71 - InterpolateR-1.3-4/InterpolateR/NAMESPACE | 26 InterpolateR-1.3-4/InterpolateR/NEWS.md | 26 InterpolateR-1.3-4/InterpolateR/R/Cressman.R | 97 +- InterpolateR-1.3-4/InterpolateR/R/IDW.R | 112 +- InterpolateR-1.3-4/InterpolateR/R/Intr_Connections_module.R |only InterpolateR-1.3-4/InterpolateR/R/Intr_gof.R |only InterpolateR-1.3-4/InterpolateR/R/RFmerge.R | 170 ++- InterpolateR-1.3-4/InterpolateR/R/RFplus.R | 242 ++--- InterpolateR-1.3-4/InterpolateR/R/create_data.R |only InterpolateR-1.3-4/InterpolateR/R/zzz.R |only InterpolateR-1.3-4/InterpolateR/README.md | 35 InterpolateR-1.3-4/InterpolateR/build/vignette.rds |binary InterpolateR-1.3-4/InterpolateR/data/BD_Coord.rda |only InterpolateR-1.3-4/InterpolateR/data/BD_Obs.rda |only InterpolateR-1.3-4/InterpolateR/inst/NEWS |only InterpolateR-1.3-4/InterpolateR/inst/doc/InterpolateR.Rmd | 440 ++++------ InterpolateR-1.3-4/InterpolateR/inst/extdata/CHIRPS.nc |binary InterpolateR-1.3-4/InterpolateR/inst/extdata/DEM.nc |binary InterpolateR-1.3-4/InterpolateR/inst/extdata/Folds_ejs_create_data |only InterpolateR-1.3-4/InterpolateR/inst/extdata/MSWEP.nc |binary InterpolateR-1.3-4/InterpolateR/inst/extdata/study_area.dbf |binary InterpolateR-1.3-4/InterpolateR/man/BD_Coord.Rd | 64 - InterpolateR-1.3-4/InterpolateR/man/BD_Obs.Rd | 92 +- InterpolateR-1.3-4/InterpolateR/man/Cressman.Rd | 27 InterpolateR-1.3-4/InterpolateR/man/IDW.Rd | 29 InterpolateR-1.3-4/InterpolateR/man/RFmerge.Rd | 19 InterpolateR-1.3-4/InterpolateR/man/RFplus.Rd | 14 InterpolateR-1.3-4/InterpolateR/man/create_data.Rd |only InterpolateR-1.3-4/InterpolateR/tests/testthat.R | 24 InterpolateR-1.3-4/InterpolateR/tests/testthat/test-Cressman.R | 144 ++- InterpolateR-1.3-4/InterpolateR/tests/testthat/test-IDW.R | 157 +++ InterpolateR-1.3-4/InterpolateR/tests/testthat/test-RFmerge.R | 275 +++++- InterpolateR-1.3-4/InterpolateR/tests/testthat/test-RFplus.R | 290 ++++++ InterpolateR-1.3-4/InterpolateR/tests/testthat/test-create_data.R |only InterpolateR-1.3-4/InterpolateR/vignettes/InterpolateR.Rmd | 440 ++++------ 43 files changed, 1764 insertions(+), 1052 deletions(-)
Title: Bayesian Dynamic Systems Modeling
Description: Implements methods for building and analyzing models based on panel
data as described in the paper by
Moral-Benito (2013, <doi:10.1080/07350015.2013.818003>).
The package provides functions to estimate dynamic panel data models
and analyze the results of the estimation.
Author: Mateusz Wyszynski [aut],
Marcin Dubel [ctb, cre],
Krzysztof Beck [ctb]
Maintainer: Marcin Dubel <marcindubel@gmail.com>
Diff between bdsm versions 0.2.0 dated 2025-04-18 and 0.2.1 dated 2025-05-02
bdsm-0.2.0/bdsm/tests/testthat/testthat-problems.rds |only bdsm-0.2.1/bdsm/DESCRIPTION | 6 +++--- bdsm-0.2.1/bdsm/MD5 | 12 +++++++++--- bdsm-0.2.1/bdsm/NEWS.md | 4 ++++ bdsm-0.2.1/bdsm/build |only bdsm-0.2.1/bdsm/inst/doc |only bdsm-0.2.1/bdsm/vignettes |only 7 files changed, 16 insertions(+), 6 deletions(-)
Title: A Graphical User Interface for Testing Normality Visually
Description: Package including an interactive Shiny application for
testing normality visually.
Author: Christopher Casement [cre, aut],
Laura McSweeney [aut]
Maintainer: Christopher Casement <casementc@gmail.com>
Diff between NormalityAssessment versions 0.1.0 dated 2022-11-09 and 0.1.1 dated 2025-05-02
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/NormalityAssessment-package.R | 6 +++--- README.md | 14 +++++++------- inst/CITATION | 31 ++++++++----------------------- inst/NormalityAssessment/ui.R | 15 ++++++++++++--- man/NormalityAssessment-package.Rd | 7 +++---- 9 files changed, 50 insertions(+), 53 deletions(-)
More information about NormalityAssessment at CRAN
Permanent link
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- logistic regression with penalised likelihood for rare events;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 8.0-2 dated 2025-01-21 and 8.1-0 dated 2025-05-02
DESCRIPTION | 17 MD5 | 144 ++-- NAMESPACE | 30 NEWS.md | 127 +++ R/baujat.R | 4 R/bracket.longarm.R |only R/bracket.pairwise.R | 26 R/bubble.R | 2 R/catmeth-internal.R | 21 R/catmeth.R | 79 +- R/cidprop.R |only R/drapery.R | 2 R/forest-internal.R | 210 ++++-- R/forest.R | 1542 +++++++++++++++++++-------------------------- R/forest.metabind.R | 7 R/forest.metacum.R |only R/forest.metainf.R |only R/funnel.R | 37 - R/gm.R | 103 ++- R/longarm.R | 35 - R/meta-aux.R | 37 - R/meta-chk.R | 34 R/meta-internal.R | 52 + R/meta-object.R | 6 R/meta-package.R | 17 R/meta-xlab.R | 12 R/metabin.R | 605 ++++++++++------- R/metacont.R | 81 +- R/metacor.R | 33 R/metacr.R | 18 R/metacum-internal.R |only R/metacum.R | 607 ++++++++++++----- R/metagen.R | 94 +- R/metainc.R | 422 ++++++++---- R/metainf-internal.R |only R/metainf.R | 636 +++++++++++++----- R/metamean.R | 5 R/metamerge.R | 38 - R/metaprop.R | 87 +- R/metarate.R | 87 +- R/pairwise.R | 428 +++++++----- R/plot.cidprop.R |only R/print.meta.R | 38 - R/print.metacum.R |only R/print.metainf.R |only R/settings.meta.R | 103 +-- R/subgroup.R | 96 ++ R/subset.longarm.R | 26 R/subset.pairwise.R | 30 R/trimfill.R | 2 R/update.meta.R | 308 +++++--- build/vignette.rds |binary inst/doc/meta-tutorial.pdf |binary inst/doc/meta-workflow.pdf |binary man/cidprop.Rd |only man/forest.meta.Rd | 158 +++- man/forest.metabind.Rd | 4 man/forest.metacum.Rd |only man/forest.metainf.Rd |only man/meta-object.Rd | 6 man/metabin.Rd | 20 man/metacont.Rd | 3 man/metacor.Rd | 31 man/metacr.Rd | 6 man/metacum.Rd | 86 ++ man/metagen.Rd | 2 man/metainc.Rd | 18 man/metainf.Rd | 97 ++ man/metamean.Rd | 3 man/metamerge.Rd | 30 man/metaprop.Rd | 6 man/metarate.Rd | 6 man/pairwise.Rd | 85 +- man/plot.cidprop.Rd |only man/print.metacum.Rd |only man/print.metainf.Rd |only man/sub-.longarm.Rd |only man/sub-.pairwise.Rd | 6 man/subset.longarm.Rd | 19 man/subset.pairwise.Rd | 4 man/update.meta.Rd | 21 81 files changed, 4320 insertions(+), 2579 deletions(-)
Title: High-Dimensional Mean Comparison with Projection and
Cross-Fitting
Description: Provides interpretable high-dimensional mean comparison methods (HMC).
For example, users can apply these methods to assess the difference in
gene expression between two treatment groups. It is not a gene-by-gene
comparison. Instead, the methods focus on the interplay between features
and identify those that are predictive of the group label. The tests are
valid frequentist procedures and yield sparse estimates indicating which
features contribute to the group differences.
Author: Tianyu Zhang [aut, cre, cph]
Maintainer: Tianyu Zhang <tianyuz3@andrew.cmu.edu>
Diff between HMC versions 1.1 dated 2024-08-16 and 1.2 dated 2025-05-02
DESCRIPTION | 28 +++++++++++++------- MD5 | 21 ++++++++++++--- NAMESPACE | 20 ++++++++++++++ R/31_pre_processing_functions.R |only R/41_refined_anchored_lasso.R |only R/principle_component_based_methods.R | 37 --------------------------- man/check_data_for_folds.Rd |only man/check_non_null_and_identical_colnames.Rd |only man/collect_active_features_proj.Rd |only man/combine_folds_mean_diff.Rd |only man/compute_predictive_contributions.Rd |only man/estimate_leading_pc.Rd |only man/fit_lasso.Rd |only man/index_spliter.Rd | 16 +++++++---- man/mean_comparison_anchor.Rd |only man/normalize_and_split.Rd |only man/process_fold_mean_diff.Rd |only man/validate_and_convert_data.Rd |only 18 files changed, 66 insertions(+), 56 deletions(-)
Title: Network Analysis of Dependencies of CRAN Packages
Description: The dependencies of CRAN packages can be analysed in a network fashion. For each package we can obtain the packages that it depends, imports, suggests, etc. By iterating this procedure over a number of packages, we can build, visualise, and analyse the dependency network, enabling us to have a bird's-eye view of the CRAN ecosystem. One aspect of interest is the number of reverse dependencies of the packages, or equivalently the in-degree distribution of the dependency network. This can be fitted by the power law and/or an extreme value mixture distribution <doi:10.1111/stan.12355>, of which functions are provided.
Author: Clement Lee [aut, cre]
Maintainer: Clement Lee <clement.lee.tm@outlook.com>
Diff between crandep versions 0.3.11 dated 2024-12-06 and 0.3.12 dated 2025-05-02
DESCRIPTION | 8 ++--- MD5 | 24 +++++++-------- NEWS.md | 14 +++++++++ R/cleaning.R | 27 +++++++---------- R/get_dep.R | 5 +-- build/vignette.rds |binary inst/doc/cran.html | 68 ++++++++++++++++++++++---------------------- inst/doc/degree.R | 20 +++++++----- inst/doc/degree.Rmd | 4 ++ inst/doc/degree.html | 66 ++++++++++++++++-------------------------- inst/doc/introduction.html | 8 ++--- man/get_dep_all_packages.Rd | 4 +- vignettes/degree.Rmd | 4 ++ 13 files changed, 129 insertions(+), 123 deletions(-)
Title: Betas-Select in Structural Equation Models and Linear Models
Description: It computes betas-select, coefficients after standardization in
structural equation models and regression models, standardizing only selected
variables. Supports models with moderation, with product terms formed after
standardization. It also offers confidence intervals that account for
standardization, including bootstrap confidence intervals as proposed by
Cheung et al. (2022) <doi:10.1037/hea0001188>.
Author: Shu Fai Cheung [aut, cre] ,
Rong Wei Sun [aut] ,
Florbela Chang [aut] ,
Wendie Yang [aut] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between betaselectr versions 0.1.0 dated 2024-11-11 and 0.1.2 dated 2025-05-02
DESCRIPTION | 17 - MD5 | 43 ++- NEWS.md | 19 + R/coef_lav_betaselect.R | 3 R/confint_lav_betaselect.R | 3 R/lav_betaselect.R | 23 + R/lav_betaselect_helpers.R | 23 + R/print_std_selected_lavaan.R | 3 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/betaselectr_lav.Rmd | 133 ++++++----- inst/doc/betaselectr_lav.html | 284 ++++++++++++------------ inst/workflow_gen_std.md |only inst/workflow_lav.md |only man/coef.lav_betaselect.Rd | 3 man/confint.lav_betaselect.Rd | 3 man/lav_betaselect.Rd | 9 man/print.lav_betaselect.Rd | 3 tests/testthat/test-lav_betaselect_mod.R |only tests/testthat/test-lav_betaselect_mod_boot_1.R | 2 tests/testthat/test-lav_betaselect_one_iv.R |only tests/testthat/test_lm_betaselect_one_iv.R |only vignettes/betaselectr_lav.Rmd | 133 ++++++----- vignettes/betaselectr_lav.Rmd.original | 14 + 25 files changed, 435 insertions(+), 285 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.1.2 dated 2025-04-25 and 2.1.3 dated 2025-05-02
DESCRIPTION | 8 MD5 | 38 - R/GeoCV.R | 1436 +++++++++++++++++++++++---------------------- R/GeoCompositeLik2.R | 15 R/GeoDoScores.R | 3 R/GeoFit.r | 14 R/GeoFit2.R | 2 R/GeoNeighIndex.R | 22 R/GeoNeighborhood.R | 307 +++++---- R/GeoScatterplot.R | 415 ++++++------- R/GeoSimCopula.R | 7 R/Geovarestbootstrap.R | 14 R/Utility.r | 44 - man/GeoCV.Rd | 2 man/GeoFit.Rd | 6 src/CompositeLikelihood2.c | 1390 ++++++++++++++++++++++++++++--------------- src/Distributions.c | 207 ++++-- src/Utility.c | 78 +- src/header.h | 7 src/weightedleastsquare.c | 50 - 20 files changed, 2340 insertions(+), 1725 deletions(-)
Title: Self-Tuning Data Adaptive Matrix Imputation
Description: Implements the AdaptiveImpute matrix completion
algorithm of 'Intelligent Initialization and Adaptive Thresholding for
Iterative Matrix Completion' <doi:10.1080/10618600.2018.1518238> as
well as the specialized variant of 'Co-Factor Analysis of
Citation Networks' <doi:10.1080/10618600.2024.2394464>.
AdaptiveImpute is useful for embedding sparsely observed matrices,
often out performs competing matrix completion algorithms, and
self-tunes its hyperparameter, making usage easy.
Author: Alex Hayes [aut, cre, cph] ,
Juhee Cho [aut],
Donggyu Kim [aut],
Karl Rohe [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between fastadi versions 0.1.1 dated 2022-09-07 and 0.1.2 dated 2025-05-02
DESCRIPTION | 21 ++++++++++-------- MD5 | 29 +++++++++++++++---------- NAMESPACE | 4 +++ NEWS.md | 4 +++ R/RcppExports.R | 16 ++++++++++++++ R/adaptive-impute.R | 2 - R/adaptive-initialize.R | 2 - R/citation-impute.R | 2 - R/citation-impute2.R |only README.md | 13 +++++++---- build |only man/citation_impute2.Rd |only man/fastadi-package.Rd | 3 +- src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 54 ++++++++++++++++++++++++++++++++++++++++++++++++ src/fastadi_types.h |only src/scratch.cpp |only 18 files changed, 120 insertions(+), 32 deletions(-)
Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique that involves
training a model to combine the outputs of many diverse statistical
models, and has been shown to improve predictive performance in a
variety of settings. 'stacks' implements a grammar for
'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between stacks versions 1.0.5 dated 2024-07-22 and 1.1.0 dated 2025-05-02
stacks-1.0.5/stacks/tests/testthat/test_add_candidates.R |only stacks-1.0.5/stacks/tests/testthat/test_blend_predictions.R |only stacks-1.0.5/stacks/tests/testthat/test_butcher.R |only stacks-1.0.5/stacks/tests/testthat/test_collect_parameters.R |only stacks-1.0.5/stacks/tests/testthat/test_cran.R |only stacks-1.0.5/stacks/tests/testthat/test_expressions.R |only stacks-1.0.5/stacks/tests/testthat/test_fit_members.R |only stacks-1.0.5/stacks/tests/testthat/test_plots.R |only stacks-1.0.5/stacks/tests/testthat/test_predict.R |only stacks-1.0.5/stacks/tests/testthat/test_print.R |only stacks-1.0.5/stacks/tests/testthat/test_utils.R |only stacks-1.1.0/stacks/DESCRIPTION | 26 stacks-1.1.0/stacks/LICENSE | 2 stacks-1.1.0/stacks/MD5 | 118 +- stacks-1.1.0/stacks/NAMESPACE | 1 stacks-1.1.0/stacks/NEWS.md | 13 stacks-1.1.0/stacks/R/add_candidates.R | 439 +++++----- stacks-1.1.0/stacks/R/blend_predictions.R | 329 ++++--- stacks-1.1.0/stacks/R/butcher.R | 67 - stacks-1.1.0/stacks/R/collect_parameters.R | 132 +-- stacks-1.1.0/stacks/R/constructors.R | 8 stacks-1.1.0/stacks/R/control.R | 22 stacks-1.1.0/stacks/R/example_data.R | 50 - stacks-1.1.0/stacks/R/expressions.R | 86 + stacks-1.1.0/stacks/R/fit_members.R | 248 +++-- stacks-1.1.0/stacks/R/import-standalone-obj-type.R |only stacks-1.1.0/stacks/R/import-standalone-types-check.R |only stacks-1.1.0/stacks/R/plots.R | 154 +-- stacks-1.1.0/stacks/R/predict.R | 192 ++-- stacks-1.1.0/stacks/R/print.R | 164 ++- stacks-1.1.0/stacks/R/stacks.R | 40 stacks-1.1.0/stacks/R/stacks_package.R | 2 stacks-1.1.0/stacks/R/tree_frogs.R | 36 stacks-1.1.0/stacks/R/utils.R | 41 stacks-1.1.0/stacks/README.md | 143 +-- stacks-1.1.0/stacks/build/partial.rdb |binary stacks-1.1.0/stacks/build/vignette.rds |binary stacks-1.1.0/stacks/inst/doc/basics.R | 379 ++++---- stacks-1.1.0/stacks/inst/doc/basics.Rmd | 176 ++-- stacks-1.1.0/stacks/inst/doc/basics.html | 219 +--- stacks-1.1.0/stacks/inst/doc/classification.R | 300 +++--- stacks-1.1.0/stacks/inst/doc/classification.Rmd | 119 +- stacks-1.1.0/stacks/inst/doc/classification.html | 133 --- stacks-1.1.0/stacks/man/add_candidates.Rd | 38 stacks-1.1.0/stacks/man/axe_model_stack.Rd | 10 stacks-1.1.0/stacks/man/blend_predictions.Rd | 50 - stacks-1.1.0/stacks/man/collect_parameters.Rd | 16 stacks-1.1.0/stacks/man/control_stack.Rd | 11 stacks-1.1.0/stacks/man/example_data.Rd | 74 - stacks-1.1.0/stacks/man/fit_members.Rd | 40 stacks-1.1.0/stacks/man/predict.model_stack.Rd | 24 stacks-1.1.0/stacks/man/stacks_description.Rd | 2 stacks-1.1.0/stacks/tests/testthat/_snaps/add_candidates.md | 76 + stacks-1.1.0/stacks/tests/testthat/_snaps/blend_predictions.md | 26 stacks-1.1.0/stacks/tests/testthat/_snaps/collect_parameters.md | 8 stacks-1.1.0/stacks/tests/testthat/_snaps/fit_members.md | 30 stacks-1.1.0/stacks/tests/testthat/_snaps/predict.md | 8 stacks-1.1.0/stacks/tests/testthat/_snaps/utils.md | 16 stacks-1.1.0/stacks/tests/testthat/helper_functions.R | 14 stacks-1.1.0/stacks/tests/testthat/test-add_candidates.R |only stacks-1.1.0/stacks/tests/testthat/test-blend_predictions.R |only stacks-1.1.0/stacks/tests/testthat/test-butcher.R |only stacks-1.1.0/stacks/tests/testthat/test-collect_parameters.R |only stacks-1.1.0/stacks/tests/testthat/test-cran.R |only stacks-1.1.0/stacks/tests/testthat/test-expressions.R |only stacks-1.1.0/stacks/tests/testthat/test-fit_members.R |only stacks-1.1.0/stacks/tests/testthat/test-plots.R |only stacks-1.1.0/stacks/tests/testthat/test-predict.R |only stacks-1.1.0/stacks/tests/testthat/test-print.R |only stacks-1.1.0/stacks/tests/testthat/test-utils.R |only stacks-1.1.0/stacks/vignettes/basics.Rmd | 176 ++-- stacks-1.1.0/stacks/vignettes/classification.Rmd | 119 +- 72 files changed, 2353 insertions(+), 2024 deletions(-)
Title: The Q-Matrix Validation Methods Framework
Description: Provide a variety of Q-matrix validation methods for the generalized
cognitive diagnosis models, including the method based on the generalized
deterministic input, noisy, and gate model (G-DINA) by de la Torre (2011)
<DOI:10.1007/s11336-011-9207-7> discrimination index (the GDI method) by
de la Torre and Chiu (2016) <DOI:10.1007/s11336-015-9467-8>, the Hull method
by Najera et al. (2021) <DOI:10.1111/bmsp.12228>, the stepwise Wald test method
(the Wald method) by Ma and de la Torre (2020) <DOI:10.1111/bmsp.12156>, the
multiple logistic regression‑based Q‑matrix validation method (the MLR-B method)
by Tu et al. (2022) <DOI:10.3758/s13428-022-01880-x>, the beta method based on
signal detection theory by Li and Chen (2024) <DOI:10.1111/bmsp.12371> and
Q-matrix validation based on relative fit index by Chen et al. (2013)
<DOI:10.1111/j.1745-3984.2012.00185.x>. Different research methods and iterative
procedures during Q-matrix validating are availa [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between Qval versions 1.2.1 dated 2025-04-22 and 1.2.2 dated 2025-05-02
Qval-1.2.1/Qval/R/Qvalindex.R |only Qval-1.2.1/Qval/R/Qvalvalidation.R |only Qval-1.2.1/Qval/R/S3.R |only Qval-1.2.1/Qval/R/plot.Hull.R |only Qval-1.2.1/Qval/man/plot.validation.Rd |only Qval-1.2.1/Qval/man/print.CDM.Rd |only Qval-1.2.1/Qval/man/print.sim.data.Rd |only Qval-1.2.1/Qval/man/print.validation.Rd |only Qval-1.2.2/Qval/DESCRIPTION | 38 +++++--- Qval-1.2.2/Qval/MD5 | 97 ++++++++++---------- Qval-1.2.2/Qval/NAMESPACE | 16 +++ Qval-1.2.2/Qval/NEWS.md | 10 ++ Qval-1.2.2/Qval/R/CDM.R | 55 ++++++----- Qval-1.2.2/Qval/R/IndexBeta.R | 20 ++-- Qval-1.2.2/Qval/R/IndexPVAF.R | 25 +++-- Qval-1.2.2/Qval/R/IndexPriority.R | 11 +- Qval-1.2.2/Qval/R/IndexR2.R | 22 ++-- Qval-1.2.2/Qval/R/Mmatrix.R | 6 - Qval-1.2.2/Qval/R/QvalBeta.R | 29 +++--- Qval-1.2.2/Qval/R/QvalIndex.R |only Qval-1.2.2/Qval/R/QvalValidation.R |only Qval-1.2.2/Qval/R/Rmatrix.R | 4 Qval-1.2.2/Qval/R/S3Extract.R |only Qval-1.2.2/Qval/R/S3Plot.R |only Qval-1.2.2/Qval/R/S3Print.R |only Qval-1.2.2/Qval/R/S3Summary.R |only Qval-1.2.2/Qval/R/S3Update.R |only Qval-1.2.2/Qval/R/Wald.test.R | 44 ++++++--- Qval-1.2.2/Qval/R/fit.R | 10 +- Qval-1.2.2/Qval/R/sim.MQ.R | 2 Qval-1.2.2/Qval/R/sim.Q.R | 2 Qval-1.2.2/Qval/R/sim.data.R | 35 ++++--- Qval-1.2.2/Qval/R/zzz.R | 5 + Qval-1.2.2/Qval/man/CDM.Rd | 37 ++++--- Qval-1.2.2/Qval/man/Wald.test.Rd | 8 - Qval-1.2.2/Qval/man/extract.Rd | 152 +++++++++++++++----------------- Qval-1.2.2/Qval/man/fit.Rd | 10 +- Qval-1.2.2/Qval/man/get.Mmatrix.Rd | 6 - Qval-1.2.2/Qval/man/get.PVAF.Rd | 21 ++-- Qval-1.2.2/Qval/man/get.R2.Rd | 16 +-- Qval-1.2.2/Qval/man/get.Rmatrix.Rd | 5 - Qval-1.2.2/Qval/man/get.beta.Rd | 12 +- Qval-1.2.2/Qval/man/get.priority.Rd | 5 - Qval-1.2.2/Qval/man/plot.Rd |only Qval-1.2.2/Qval/man/print.Rd |only Qval-1.2.2/Qval/man/sim.MQ.Rd | 2 Qval-1.2.2/Qval/man/sim.Q.Rd | 2 Qval-1.2.2/Qval/man/sim.data.Rd | 24 ++--- Qval-1.2.2/Qval/man/summary.Rd |only Qval-1.2.2/Qval/man/update.Rd |only Qval-1.2.2/Qval/man/validation.Rd | 93 +++++++++---------- Qval-1.2.2/Qval/man/zOSR.Rd | 14 +- Qval-1.2.2/Qval/man/zQRR.Rd | 14 +- Qval-1.2.2/Qval/man/zTNR.Rd | 16 +-- Qval-1.2.2/Qval/man/zTPR.Rd | 16 +-- Qval-1.2.2/Qval/man/zUSR.Rd | 14 +- Qval-1.2.2/Qval/man/zVRR.Rd | 14 +- Qval-1.2.2/Qval/tests/building.R | 14 +- Qval-1.2.2/Qval/tests/demo.R | 12 +- 59 files changed, 533 insertions(+), 405 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-23 dated 2024-12-02 and 1.2-24 dated 2025-05-02
DESCRIPTION | 15 ++++--- MD5 | 28 +++++++------- R/ctree.R | 10 +++++ R/party.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 14 +++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary tests/bugfixes.R | 28 ++++++++++++++ tests/bugfixes.Rout.save | 88 +++++++++++++++++++++++++++++++++++++++++++-- tests/constparty.R | 1 tests/constparty.Rout.save | 11 ++--- 15 files changed, 166 insertions(+), 31 deletions(-)
Title: Tools and Classes for Statistical Models
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is likely to
change in the future. The documentation is rather terse, but packages `coin'
and `party' have some working examples. However, if you find the
implemented ideas interesting we would be very interested in a discussion
of this proposal. Contributions are more than welcome!
Author: Torsten Hothorn [aut, cre] ,
Friedrich Leisch [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between modeltools versions 0.2-23 dated 2020-03-05 and 0.2-24 dated 2025-05-02
DESCRIPTION | 28 ++++++++++++++++++++++------ MD5 | 4 ++-- inst/NEWS | 4 ++++ 3 files changed, 28 insertions(+), 8 deletions(-)
Title: Maximally Selected Rank Statistics
Description: Maximally selected rank statistics with
several p-value approximations.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between maxstat versions 0.7-25 dated 2017-03-02 and 0.7-26 dated 2025-05-02
DESCRIPTION | 15 +++++++++------ MD5 | 10 +++++----- build/vignette.rds |binary data/treepipit.rda |binary inst/NEWS | 4 ++++ inst/doc/maxstat.pdf |binary 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Get on to the Slides
Description: Create tables from within R directly on Google Slides
presentations. Currently supports matrix, data.frame and 'flextable'
objects.
Author: Isaac Gravestock [aut, cre]
Maintainer: Isaac Gravestock <isaac.gravestock@gmail.com>
Diff between ladder versions 0.0.1 dated 2025-05-02 and 0.0.3 dated 2025-05-02
DESCRIPTION | 8 LICENSE |only MD5 | 46 +-- NAMESPACE | 2 NEWS.md | 7 R/api_choose.R | 495 ++++++++++++++++++------------------ R/api_slides_auth.R | 566 +++++++++++++++++++++--------------------- R/data.frame.R | 188 +++++++------ R/flextable.R | 423 ++++++++++++++++--------------- R/flextable_borders.R | 2 R/flextable_paragraph_style.R | 26 + R/functions.R | 27 ++ R/gauth_token.R | 160 ++++++----- R/generics.R | 44 +-- R/get_slide_ids.R | 68 ++--- R/matrix.R | 163 ++++++------ README.md | 207 ++++++++------- inst/WORDLIST | 1 man/add_to_slides.Rd | 20 + man/convert-units.Rd |only man/create_slides.Rd | 38 +- man/get_layouts.Rd | 46 +-- man/new_slide.Rd | 92 +++--- man/use_gauth_workflow.Rd | 48 +-- man/view_slide.Rd | 64 ++-- 25 files changed, 1442 insertions(+), 1299 deletions(-)
Title: Functions to Interact with the ICES Data Submission Utility
(DATSU)
Description: Functions to Interact with the ICES Data Submission Utility (DATSU)
<https://datsu.ices.dk/web/index.aspx>.
Author: Colin Millar [aut, cre],
Carlos Pinto [aut],
Laura Andreea Petre [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesDatsu versions 1.2.0 dated 2024-10-24 and 1.2.1 dated 2025-05-02
DESCRIPTION | 9 +++++---- MD5 | 13 ++++++++----- NAMESPACE | 4 ++++ NEWS.md | 5 +++++ R/getDataFieldsDescription.R | 2 +- R/httpUtils.R | 2 ++ R/onLoad.R |only R/uploadDatsuFile.R |only man/uploadDatsuFile.Rd |only 9 files changed, 25 insertions(+), 10 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book
''A Handbook of Statistical Analyses Using R'' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Torsten Hothorn [aut, cre] ,
Brian S. Everitt [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR2 versions 1.1-20 dated 2023-09-08 and 1.1-21 dated 2025-05-02
DESCRIPTION | 19 +++- MD5 | 102 +++++++++++++------------- build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 + inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.pdf |binary vignettes/tables/rec.tex | 12 +-- 52 files changed, 74 insertions(+), 63 deletions(-)
Title: A Handbook of Statistical Analyses Using R (1st Edition)
Description: Functions, data sets, analyses and examples from the book
''A Handbook of Statistical Analyses Using R'' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2006). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available.
Author: Torsten Hothorn [aut, cre] ,
Brian S. Everitt [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR versions 1.3-10 dated 2022-04-26 and 1.3-11 dated 2025-05-02
DESCRIPTION | 17 +++++++--- MD5 | 44 +++++++++++++------------- R/tools.R | 2 - build/vignette.rds |binary inst/NEWS | 4 ++ inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.pdf |binary inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_survival_analysis.pdf |binary inst/doc/preface.pdf |binary vignettes/tables/rec.tex | 14 ++++---- 23 files changed, 46 insertions(+), 35 deletions(-)
Title: Spatial Phylogenetic Analysis
Description: Analyze spatial phylogenetic diversity patterns.
Use your data on an evolutionary tree and geographic distributions of the
terminal taxa to compute diversity and endemism metrics, test significance
with null model randomization, analyze community turnover and biotic
regionalization, and perform spatial conservation prioritizations. All
functions support quantitative community data in addition to binary data.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>
Diff between phylospatial versions 1.1.0 dated 2025-04-09 and 1.1.1 dated 2025-05-02
DESCRIPTION | 11 +-- MD5 | 61 +++++++++-------- NAMESPACE | 1 NEWS.md | 8 +- R/moss.R | 2 R/phylospatial-package.R | 1 R/ps_canape.R | 3 R/ps_diversity.R | 5 - R/ps_rand.R | 19 +++-- README.md | 11 +-- inst/doc/alpha-diversity.R | 29 +++++--- inst/doc/alpha-diversity.Rmd | 72 ++++++++++++-------- inst/doc/alpha-diversity.html | 120 ++++++++++++++++++---------------- inst/doc/beta-diversity.R | 20 +++-- inst/doc/beta-diversity.Rmd | 22 +++--- inst/doc/beta-diversity.html | 35 +++++---- inst/doc/prioritization.R | 45 ++++++++++-- inst/doc/prioritization.Rmd | 55 ++++++++++++--- inst/doc/prioritization.html | 47 ++++++------- inst/extdata/alpha-diversity-rand.tif |only inst/extdata/priority-prob.tif |only inst/extdata/priority.tif |only man/moss.Rd | 2 man/phylospatial-package.Rd | 2 man/ps_canape.Rd | 3 man/ps_diversity.Rd | 5 - man/ps_rand.Rd | 13 ++- tests/testthat/Rplots.pdf |binary tests/testthat/test-ps_diversity.R | 3 tests/testthat/test-ps_rand.R | 1 vignettes/alpha-diversity.Rmd | 72 ++++++++++++-------- vignettes/beta-diversity.Rmd | 22 +++--- vignettes/prioritization.Rmd | 55 ++++++++++++--- 33 files changed, 471 insertions(+), 274 deletions(-)
Title: Datasets and Functions for the Class "Modelling and Data
Analysis for Pharmaceutical Sciences"
Description: Provides datasets and functions for the class "Modelling and Data Analysis for Pharmaceutical Sciences".
The datasets can be used to present various methods of data analysis and statistical modeling.
Functions for data visualization are also implemented.
Author: Lionel Voirol [aut, cre],
Stephane Guerrier [aut],
Yuming Zhang [aut],
Luca Insolia [aut]
Maintainer: Lionel Voirol <lionelvoirol@hotmail.com>
Diff between idarps versions 0.0.4 dated 2024-05-02 and 0.0.5 dated 2025-05-02
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NEWS.md | 3 +++ R/document_data.R | 24 ++++++++++++++++++++++++ data/centenarian.rda |only man/centenarian.Rd |only 6 files changed, 36 insertions(+), 7 deletions(-)
Title: Create TLGs using the 'tidyverse'
Description: Generate tables, listings, and graphs (TLG) using 'tidyverse.'
Tables can be created functionally, using a standard TLG process, or by
specifying table and column metadata to create generic analysis summaries.
The 'envsetup' package can also be leveraged to create environments for table
creation.
Author: Nicholas Masel [aut],
Steven Haesendonckx [aut],
Pelagia Alexandra Papadopoulou [aut],
Sheng-Wei Wang [aut],
Eli Miller [aut] ,
Nathan Kosiba [aut] ,
Aidan Ceney [aut] ,
Janssen R&D [cph, fnd],
David Hugh-Jones [cph] ,
Konrad Pagacz [aut, cre]
Maintainer: Konrad Pagacz <kpagacz@its.jnj.com>
Diff between tidytlg versions 0.1.5 dated 2024-06-14 and 0.1.6 dated 2025-05-02
DESCRIPTION | 12 MD5 | 48 - NEWS.md | 4 R/quick_rtf_jnj.R | 2 build/vignette.rds |binary data/cdisc_adae.rda |binary data/cdisc_adsl.rda |binary inst/doc/freq.html | 36 inst/doc/symbols.R | 100 +- inst/doc/symbols.html | 2 inst/doc/tbl_manipulation.html | 22 inst/doc/tidytlg.R | 10 inst/doc/tidytlg.Rmd | 10 inst/doc/tidytlg.html | 480 ++++-------- inst/doc/tlgsetup.html | 2 inst/doc/univar.html | 2 tests/testthat/_snaps/borders/oldformatlisting.rtf | 2 tests/testthat/_snaps/borders/stubborntest.rtf | 2 tests/testthat/_snaps/insert_empty_rows/inserts.rtf | 2 tests/testthat/_snaps/png/test2plots.rtf | 2 tests/testthat/test_outputs/borders/oldformatlisting.rtf | 2 tests/testthat/test_outputs/borders/stubborntest.rtf | 2 tests/testthat/test_outputs/emptyrowsinsertions/inserts.rtf | 2 tests/testthat/test_outputs/test2plots.rtf | 2 vignettes/tidytlg.Rmd | 10 25 files changed, 336 insertions(+), 420 deletions(-)
Title: Equating of Multiple Forms
Description: Equating of multiple forms using Item Response Theory (IRT) methods (Battauz M. (2017) <doi:10.1007/s11336-016-9517-x>, Battauz and 'Leoncio' (2023) <doi:10.1177/01466216231151702>, Haberman S. J. (2009) <doi:10.1002/j.2333-8504.2009.tb02197.x>).
Author: Michela Battauz [aut, cre],
Waldir Leoncio [ctb]
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateMultiple versions 1.1.1 dated 2024-10-15 and 1.1.2 dated 2025-05-02
DESCRIPTION | 8 ++-- MD5 | 10 ++--- R/EqMult.r | 63 ++++++++++++++++++++++------------ build/vignette.rds |binary inst/doc/equateMultiple_tutorial.html | 2 - src/EqMult.cpp | 4 -- 6 files changed, 51 insertions(+), 36 deletions(-)
More information about equateMultiple at CRAN
Permanent link
Title: Analyses of Text using Transformers Models from HuggingFace,
Natural Language Processing and Machine Learning
Description: Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] ,
Salvatore Giorgi [aut] ,
Andrew Schwartz [aut]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 1.4 dated 2025-03-18 and 1.5 dated 2025-05-02
DESCRIPTION | 12 MD5 | 98 - NAMESPACE | 4 NEWS.md | 28 R/0_0_text_install.R | 46 R/0_1_globals.R | 5 R/0_2_privateFunctions.R | 78 - R/1_1_textEmbed.R | 553 +++++++--- R/2_1_1_textTrainN.R | 30 R/2_2_textTrainRegression.R | 187 ++- R/2_3_textTrainRandomForest.R | 185 ++- R/2_4_0_textPredict_Assess_Classify.R | 25 R/2_4_1_textPredictTextTrained.R | 188 +++ R/2_4_2_textPredictImplicitMotives.R | 20 R/2_5_textTrainPredictExamples.R | 9 R/4_0_textPlot.R | 37 R/4_2_textPlotPCA.R | 2 inst/doc/LBAM.Rmd | 22 inst/doc/LBAM.html | 44 inst/doc/huggingface_in_r.html | 116 +- inst/doc/huggingface_in_r_extended_installation_guide.Rmd | 7 inst/doc/huggingface_in_r_extended_installation_guide.html | 108 + inst/extdata/The_L-BAM_Library.csv | 141 +- inst/python/__pycache__/transformer_embs.cpython-39.pyc |only inst/python/huggingface_Interface3.py | 163 ++ inst/python/run_DLATKGetEmbedding_test.py |only inst/python/transformer_embs.py |only man/textDimName.Rd | 21 man/textEmbed.Rd | 7 man/textLBAM.Rd | 4 man/textPCA.Rd | 2 man/textPlot.Rd | 5 man/textPredict.Rd | 12 man/textTokenize.Rd | 2 man/textTrainRandomForest.Rd | 2 man/textTrainRegression.Rd | 9 tests/testthat/_snaps/2_9_textTrainExamples/examples-error-plot.svg | 60 - tests/testthat/_snaps/2_9_textTrainExamples/examples-histogram-plot.svg | 179 +-- tests/testthat/_snaps/2_9_textTrainExamples/examples-scatter-plot.svg | 121 +- tests/testthat/test_1_1_Analyses_flow.R | 70 + tests/testthat/test_1_1_Analyses_flow_dlatk.R |only tests/testthat/test_1_2_textEmbed.R | 40 tests/testthat/test_2_10_lbam_models.R |only tests/testthat/test_2_1_textTrainRegression.R | 4 tests/testthat/test_2_2_textTrainRandomForest.R | 129 +- tests/testthat/test_2_3_textTrain_strata.R | 17 tests/testthat/test_2_4_textTrainN.R | 70 - tests/testthat/test_2_9_textTrainExamples.R | 41 tests/testthat/test_5_Tasks.R | 8 tests/testthat/test_PM_tutorial.R | 5 vignettes/LBAM.Rmd | 22 vignettes/huggingface_in_r_extended_installation_guide.Rmd | 7 vignettes/l_bam_overview.png |only 53 files changed, 2092 insertions(+), 853 deletions(-)
Title: Statistical Methods for Sensitivity Analysis in Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis and to support Schwarzer et al. (2015) <DOI:10.1007/978-3-319-21416-0>, Chapter 5 'Small-Study Effects in Meta-Analysis':
- Copas selection model described in Copas & Shi (2001) <DOI:10.1177/096228020101000402>;
- limit meta-analysis by Rücker et al. (2011) <DOI:10.1093/biostatistics/kxq046>;
- upper bound for outcome reporting bias by Copas & Jackson (2004) <DOI:10.1111/j.0006-341X.2004.00161.x>;
- imputation methods for missing binary data by Gamble & Hollis (2005) <DOI:10.1016/j.jclinepi.2004.09.013> and Higgins et al. (2008) <DOI:10.1177/1740774508091600>;
- LFK index test and Doi plot by Furuya-Kanamori et al. (2018) <DOI:10.1097/XEB.0000000000000141>.
Author: Guido Schwarzer [cre, aut] ,
James R. Carpenter [aut] ,
Gerta Ruecker [aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between metasens versions 1.5-2 dated 2023-02-28 and 1.5-3 dated 2025-05-02
metasens-1.5-2/metasens/R/mean-sd-internal.R |only metasens-1.5-2/metasens/R/meta-int.R |only metasens-1.5-2/metasens/R/meta-transf.R |only metasens-1.5-3/metasens/DESCRIPTION | 22 metasens-1.5-3/metasens/MD5 | 67 - metasens-1.5-3/metasens/NEWS.md | 601 +++++---- metasens-1.5-3/metasens/R/catmeth-internal.R |only metasens-1.5-3/metasens/R/catmeth.R | 1204 +++++++++++++------- metasens-1.5-3/metasens/R/copas.R | 4 metasens-1.5-3/metasens/R/doiplot.R | 12 metasens-1.5-3/metasens/R/forest.orbbound.R | 15 metasens-1.5-3/metasens/R/funnel.limitmeta.R | 8 metasens-1.5-3/metasens/R/gm.R |only metasens-1.5-3/metasens/R/lfkindex.R | 30 metasens-1.5-3/metasens/R/limitmeta.R | 8 metasens-1.5-3/metasens/R/meta-aux.R | 124 -- metasens-1.5-3/metasens/R/meta-chk.R | 35 metasens-1.5-3/metasens/R/meta-format.R | 335 +---- metasens-1.5-3/metasens/R/meta-is.R | 34 metasens-1.5-3/metasens/R/meta-set.R | 114 - metasens-1.5-3/metasens/R/meta-xlab.R | 44 metasens-1.5-3/metasens/R/metamiss.R | 45 metasens-1.5-3/metasens/R/metasens-interal.R | 72 + metasens-1.5-3/metasens/R/metasens-package.R | 15 metasens-1.5-3/metasens/R/orbbound.R | 5 metasens-1.5-3/metasens/R/plot.copas.R | 4 metasens-1.5-3/metasens/R/print.copas.R | 15 metasens-1.5-3/metasens/R/print.limitmeta.R | 169 +- metasens-1.5-3/metasens/R/print.orbbound.R | 43 metasens-1.5-3/metasens/R/print.summary.limitmeta.R | 16 metasens-1.5-3/metasens/man/doiplot.Rd | 10 metasens-1.5-3/metasens/man/forest.orbbound.Rd | 10 metasens-1.5-3/metasens/man/funnel.limitmeta.Rd | 4 metasens-1.5-3/metasens/man/lfkindex.Rd | 10 metasens-1.5-3/metasens/man/metamiss.Rd | 22 metasens-1.5-3/metasens/man/metasens-package.Rd | 21 metasens-1.5-3/metasens/man/print.copas.Rd | 6 37 files changed, 1776 insertions(+), 1348 deletions(-)
Title: Processes Binary Data Obtained from Fragment Analysis (Such as
AFLPs, ISSRs, and RFLPs)
Description: A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: <doi:10.1016/j.biocontrol.2020.104426>. The GUI version of this package is available on the R Shiny online server at: <https://clarkevansteenderen.shinyapps.io/BINMAT/> or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) <doi:10.1111/1365-2745.12869>, and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) <doi:10.1016/j.aquabot.2021.103372>. The authors of these publications are thanked for allowing the use of their data.
Author: Clarke van Steenderen [aut, cre]
Maintainer: Clarke van Steenderen <vsteenderen@gmail.com>
Diff between BinMat versions 0.1.5 dated 2022-03-06 and 0.1.6 dated 2025-05-02
DESCRIPTION | 14 - MD5 | 18 +- R/bunias_orientalis.R | 4 R/nymphaea.R | 12 - build/vignette.rds |binary inst/doc/BinMat.Rmd | 2 inst/doc/BinMat.html | 414 ++++++++++++++++++++++++++++------------------- man/bunias_orientalis.Rd | 11 + man/nymphaea.Rd | 14 + vignettes/BinMat.Rmd | 2 10 files changed, 298 insertions(+), 193 deletions(-)
More information about tradeoffaucdim at CRAN
Permanent link
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine and for various extensions in a recent version is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.3.9 dated 2024-12-03 and 2.3.10 dated 2025-05-02
DESCRIPTION | 11 MD5 | 26 NEWS.md | 19 R/initExtension.R | 2 inst/doc/RSQLite.html | 5 man/initExtension.Rd | 2 src/Makevars | 9 src/RSQLite_types.h | 2 src/vendor/extensions/extension-functions.c | 2 src/vendor/extensions/regexp.c | 4 src/vendor/extensions/sqlite3ext.h | 2 src/vendor/sqlite3/sqlite3.c | 5998 ++++++++++++++++------------ src/vendor/sqlite3/sqlite3.h | 200 tests/testthat/helper-DBItest.R | 2 14 files changed, 3705 insertions(+), 2579 deletions(-)
Title: Call Rust Code from R using the 'extendr' Crate
Description: Provides functions to compile and load Rust code from R, similar
to how 'Rcpp' or 'cpp11' allow easy interfacing with C++ code. Also provides
helper functions to create R packages that use Rust code. Under the hood,
the Rust crate 'extendr' is used to do all the heavy lifting.
Author: Claus O. Wilke [aut] ,
Andy Thomason [aut],
Mossa M. Reimert [aut],
Ilia Kosenkov [aut, cre] ,
Malcolm Barrett [aut] ,
Josiah Parry [ctb] ,
Kenneth Vernon [ctb] ,
Alberson Miranda [ctb]
Maintainer: Ilia Kosenkov <ilia.kosenkov@outlook.com>
Diff between rextendr versions 0.3.1 dated 2023-06-20 and 0.4.0 dated 2025-05-02
rextendr-0.3.1/rextendr/R/try_save_all.R |only rextendr-0.3.1/rextendr/inst/templates/Makevars |only rextendr-0.3.1/rextendr/inst/templates/Makevars.ucrt |only rextendr-0.3.1/rextendr/inst/templates/Makevars.win |only rextendr-0.3.1/rextendr/tests/testthat/_snaps/rust-siterp.md |only rextendr-0.3.1/rextendr/tests/testthat/_snaps/unix |only rextendr-0.3.1/rextendr/tests/testthat/_snaps/windows |only rextendr-0.4.0/rextendr/DESCRIPTION | 53 rextendr-0.4.0/rextendr/MD5 | 149 +- rextendr-0.4.0/rextendr/NAMESPACE | 22 rextendr-0.4.0/rextendr/NEWS.md | 33 rextendr-0.4.0/rextendr/R/clean.R | 91 - rextendr-0.4.0/rextendr/R/cran-compliance.R |only rextendr-0.4.0/rextendr/R/create_extendr_package.R |only rextendr-0.4.0/rextendr/R/eval.R | 2 rextendr-0.4.0/rextendr/R/features.R | 16 rextendr-0.4.0/rextendr/R/find_exports.R | 19 rextendr-0.4.0/rextendr/R/find_extendr.R |only rextendr-0.4.0/rextendr/R/function_options.R | 60 rextendr-0.4.0/rextendr/R/generate_toml.R | 16 rextendr-0.4.0/rextendr/R/import-standalone-obj-type.R |only rextendr-0.4.0/rextendr/R/import-standalone-types-check.R |only rextendr-0.4.0/rextendr/R/license_note.R | 174 +- rextendr-0.4.0/rextendr/R/read_cargo_metadata.R |only rextendr-0.4.0/rextendr/R/register_extendr.R | 7 rextendr-0.4.0/rextendr/R/rextendr.R | 3 rextendr-0.4.0/rextendr/R/rextendr_document.R | 47 rextendr-0.4.0/rextendr/R/run_cargo.R |only rextendr-0.4.0/rextendr/R/rust_sitrep.R | 161 ++ rextendr-0.4.0/rextendr/R/sanitize_code.R | 70 - rextendr-0.4.0/rextendr/R/setup.R | 42 rextendr-0.4.0/rextendr/R/source.R | 64 rextendr-0.4.0/rextendr/R/standalone-purrr.R |only rextendr-0.4.0/rextendr/R/toml_serialization.R | 49 rextendr-0.4.0/rextendr/R/track_rust_source.R | 2 rextendr-0.4.0/rextendr/R/use_crate.R |only rextendr-0.4.0/rextendr/R/use_extendr.R | 252 ++- rextendr-0.4.0/rextendr/R/use_msrv.R |only rextendr-0.4.0/rextendr/R/utils.R | 32 rextendr-0.4.0/rextendr/R/write_file.R | 9 rextendr-0.4.0/rextendr/README.md | 58 rextendr-0.4.0/rextendr/build/vignette.rds |binary rextendr-0.4.0/rextendr/inst/doc/package.Rmd | 6 rextendr-0.4.0/rextendr/inst/doc/package.html | 28 rextendr-0.4.0/rextendr/inst/doc/setting_up_rust.html | 4 rextendr-0.4.0/rextendr/inst/rstudio |only rextendr-0.4.0/rextendr/inst/templates/Cargo.toml |only rextendr-0.4.0/rextendr/inst/templates/Makevars.in |only rextendr-0.4.0/rextendr/inst/templates/Makevars.win.in |only rextendr-0.4.0/rextendr/inst/templates/config.R |only rextendr-0.4.0/rextendr/inst/templates/configure |only rextendr-0.4.0/rextendr/inst/templates/configure.win |only rextendr-0.4.0/rextendr/inst/templates/extendr-wrappers.R | 2 rextendr-0.4.0/rextendr/inst/templates/msrv.R |only rextendr-0.4.0/rextendr/man/clean.Rd | 15 rextendr-0.4.0/rextendr/man/cran.Rd |only rextendr-0.4.0/rextendr/man/read_cargo_metadata.Rd |only rextendr-0.4.0/rextendr/man/rextendr.Rd | 8 rextendr-0.4.0/rextendr/man/rust_source.Rd | 4 rextendr-0.4.0/rextendr/man/use_crate.Rd |only rextendr-0.4.0/rextendr/man/use_extendr.Rd | 12 rextendr-0.4.0/rextendr/man/use_msrv.Rd |only rextendr-0.4.0/rextendr/man/vendor_pkgs.Rd |only rextendr-0.4.0/rextendr/man/write_license_note.Rd | 20 rextendr-0.4.0/rextendr/tests/data/ndarray_example.rs | 5 rextendr-0.4.0/rextendr/tests/testthat.R | 16 rextendr-0.4.0/rextendr/tests/testthat/_snaps/cran-compliance.md |only rextendr-0.4.0/rextendr/tests/testthat/_snaps/knitr-engine.md | 192 +- rextendr-0.4.0/rextendr/tests/testthat/_snaps/license_note.md | 160 +- rextendr-0.4.0/rextendr/tests/testthat/_snaps/rust-sitrep.md | 187 ++ rextendr-0.4.0/rextendr/tests/testthat/_snaps/use_extendr.md | 658 ++++++---- rextendr-0.4.0/rextendr/tests/testthat/helper.R | 44 rextendr-0.4.0/rextendr/tests/testthat/test-clean.R | 13 rextendr-0.4.0/rextendr/tests/testthat/test-cran-compliance.R |only rextendr-0.4.0/rextendr/tests/testthat/test-document.R | 30 rextendr-0.4.0/rextendr/tests/testthat/test-eval.R | 28 rextendr-0.4.0/rextendr/tests/testthat/test-extendr_function_options.R | 27 rextendr-0.4.0/rextendr/tests/testthat/test-find_extendr.R |only rextendr-0.4.0/rextendr/tests/testthat/test-knitr-engine.R | 6 rextendr-0.4.0/rextendr/tests/testthat/test-license_note.R | 17 rextendr-0.4.0/rextendr/tests/testthat/test-make-module-macro.R | 23 rextendr-0.4.0/rextendr/tests/testthat/test-name-override.R | 2 rextendr-0.4.0/rextendr/tests/testthat/test-optional-features.R | 37 rextendr-0.4.0/rextendr/tests/testthat/test-pretty_rel_path.R | 46 rextendr-0.4.0/rextendr/tests/testthat/test-read_cargo_metadata.R |only rextendr-0.4.0/rextendr/tests/testthat/test-rstudio-template.R |only rextendr-0.4.0/rextendr/tests/testthat/test-rust-sitrep.R | 135 +- rextendr-0.4.0/rextendr/tests/testthat/test-source.R | 34 rextendr-0.4.0/rextendr/tests/testthat/test-use_crate.R |only rextendr-0.4.0/rextendr/tests/testthat/test-use_dev_extendr.R | 3 rextendr-0.4.0/rextendr/tests/testthat/test-use_extendr.R | 190 ++ rextendr-0.4.0/rextendr/tests/testthat/test-use_msrv.R |only rextendr-0.4.0/rextendr/tests/testthat/test-utils.R | 16 rextendr-0.4.0/rextendr/vignettes/package.Rmd | 6 94 files changed, 2368 insertions(+), 1037 deletions(-)
Title: Estimation of Model-Based Predictions, Contrasts and Means
Description: Implements a general interface for model-based estimations
for a wide variety of models, used in the computation of
marginal means, contrast analysis and predictions. For a list of supported models,
see 'insight::supported_models()'.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Remi Theriault [aut]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between modelbased versions 0.10.0 dated 2025-03-10 and 0.11.0 dated 2025-05-02
modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_1.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_2.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_3.html |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.R |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.Rmd |only modelbased-0.10.0/modelbased/inst/doc/introduction_comparisons_4.html |only modelbased-0.10.0/modelbased/vignettes/introduction_comparisons_1.Rmd |only modelbased-0.10.0/modelbased/vignettes/introduction_comparisons_2.Rmd |only modelbased-0.10.0/modelbased/vignettes/introduction_comparisons_3.Rmd |only modelbased-0.10.0/modelbased/vignettes/introduction_comparisons_4.Rmd |only modelbased-0.11.0/modelbased/DESCRIPTION | 42 - modelbased-0.11.0/modelbased/MD5 | 151 ++--- modelbased-0.11.0/modelbased/NAMESPACE | 5 modelbased-0.11.0/modelbased/NEWS.md | 79 +++ modelbased-0.11.0/modelbased/R/clean_names.R | 21 modelbased-0.11.0/modelbased/R/estimate_contrast_methods.R | 10 modelbased-0.11.0/modelbased/R/estimate_contrasts.R | 29 - modelbased-0.11.0/modelbased/R/estimate_grouplevel.R | 259 ++++++++-- modelbased-0.11.0/modelbased/R/estimate_means.R | 222 ++++++-- modelbased-0.11.0/modelbased/R/estimate_predicted.R | 56 +- modelbased-0.11.0/modelbased/R/estimate_slopes.R | 101 +-- modelbased-0.11.0/modelbased/R/format.R | 71 +- modelbased-0.11.0/modelbased/R/get_emcontrasts.R | 51 + modelbased-0.11.0/modelbased/R/get_emmeans.R | 27 - modelbased-0.11.0/modelbased/R/get_emtrends.R | 31 - modelbased-0.11.0/modelbased/R/get_marginalcontrasts.R | 18 modelbased-0.11.0/modelbased/R/get_marginaleffects_type.R | 2 modelbased-0.11.0/modelbased/R/get_marginalmeans.R | 120 +++- modelbased-0.11.0/modelbased/R/get_marginaltrends.R | 74 ++ modelbased-0.11.0/modelbased/R/pool.R | 156 +++--- modelbased-0.11.0/modelbased/R/print.R | 78 ++- modelbased-0.11.0/modelbased/R/print_html.R | 13 modelbased-0.11.0/modelbased/R/reshape_grouplevel.R | 111 ++-- modelbased-0.11.0/modelbased/R/standardize_methods.R | 8 modelbased-0.11.0/modelbased/R/table_footer.R | 66 ++ modelbased-0.11.0/modelbased/R/utils.R | 26 - modelbased-0.11.0/modelbased/R/visualisation_recipe.R | 17 modelbased-0.11.0/modelbased/R/visualisation_recipe_internal.R | 14 modelbased-0.11.0/modelbased/README.md | 85 +++ modelbased-0.11.0/modelbased/build/partial.rdb |binary modelbased-0.11.0/modelbased/build/vignette.rds |binary modelbased-0.11.0/modelbased/inst/WORDLIST | 14 modelbased-0.11.0/modelbased/inst/doc/overview_of_vignettes.R | 2 modelbased-0.11.0/modelbased/inst/doc/overview_of_vignettes.Rmd | 3 modelbased-0.11.0/modelbased/inst/doc/overview_of_vignettes.html | 4 modelbased-0.11.0/modelbased/man/estimate_contrasts.Rd | 148 ++++- modelbased-0.11.0/modelbased/man/estimate_expectation.Rd | 14 modelbased-0.11.0/modelbased/man/estimate_grouplevel.Rd | 68 +- modelbased-0.11.0/modelbased/man/estimate_means.Rd | 157 ++++-- modelbased-0.11.0/modelbased/man/estimate_slopes.Rd | 133 ++++- modelbased-0.11.0/modelbased/man/figures/unnamed-chunk-11-1.png |binary modelbased-0.11.0/modelbased/man/figures/unnamed-chunk-12-1.png |binary modelbased-0.11.0/modelbased/man/figures/unnamed-chunk-14-1.png |binary modelbased-0.11.0/modelbased/man/figures/unnamed-chunk-3-1.png |binary modelbased-0.11.0/modelbased/man/get_emmeans.Rd | 92 +-- modelbased-0.11.0/modelbased/man/modelbased-package.Rd | 2 modelbased-0.11.0/modelbased/man/pool_predictions.Rd | 33 - modelbased-0.11.0/modelbased/man/print.estimate_contrasts.Rd | 15 modelbased-0.11.0/modelbased/man/visualisation_recipe.estimate_predicted.Rd | 6 modelbased-0.11.0/modelbased/tests/testthat/test-attributes_estimatefun.R | 2 modelbased-0.11.0/modelbased/tests/testthat/test-brms.R | 43 + modelbased-0.11.0/modelbased/tests/testthat/test-estimate_contrasts.R | 12 modelbased-0.11.0/modelbased/tests/testthat/test-estimate_contrasts_methods.R | 5 modelbased-0.11.0/modelbased/tests/testthat/test-estimate_grouplevel.R | 54 +- modelbased-0.11.0/modelbased/tests/testthat/test-estimate_means.R | 11 modelbased-0.11.0/modelbased/tests/testthat/test-estimate_means_ci.R | 4 modelbased-0.11.0/modelbased/tests/testthat/test-estimate_predicted.R | 29 + modelbased-0.11.0/modelbased/tests/testthat/test-estimate_slopes.R | 43 + modelbased-0.11.0/modelbased/tests/testthat/test-glmmTMB.R | 22 modelbased-0.11.0/modelbased/tests/testthat/test-keep_iterations.R | 2 modelbased-0.11.0/modelbased/tests/testthat/test-maihda.R |only modelbased-0.11.0/modelbased/tests/testthat/test-mice.R | 56 +- modelbased-0.11.0/modelbased/tests/testthat/test-multivariate_response.R | 4 modelbased-0.11.0/modelbased/tests/testthat/test-offset.R |only modelbased-0.11.0/modelbased/tests/testthat/test-ordinal.R | 5 modelbased-0.11.0/modelbased/tests/testthat/test-plot-slopes.R |only modelbased-0.11.0/modelbased/tests/testthat/test-table_footer.R | 2 modelbased-0.11.0/modelbased/tests/testthat/test-transform_response.R | 8 modelbased-0.11.0/modelbased/vignettes/bibliography.bib | 50 + modelbased-0.11.0/modelbased/vignettes/overview_of_vignettes.Rmd | 3 86 files changed, 2183 insertions(+), 806 deletions(-)
Title: Epidemiological Report
Description: Drafting an epidemiological report in 'Microsoft Word' format for a given disease,
similar to the Annual Epidemiological Reports published by the European Centre
for Disease Prevention and Control. Through standalone functions, it is specifically
designed to generate each disease specific output presented in these reports and includes:
- Table with the distribution of cases by Member State over the last five years;
- Seasonality plot with the distribution of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Trend plot with the trend and number of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level.
Two types of datasets can be used:
- The default dataset of dengue 2015-2019 data;
- Any dataset specified as described in the vignette.
Author: Lore Merdrignac [aut, ctr, cre] ,
Tommi Karki [aut, fnd],
Esther Kissling [aut, ctr],
Joana Gomes Dias [aut, fnd]
Maintainer: Lore Merdrignac <l.merdrignac@epiconcept.fr>
Diff between EpiReport versions 1.0.3 dated 2025-04-18 and 1.0.4 dated 2025-05-02
EpiReport-1.0.3/EpiReport/inst/NEWS.md |only EpiReport-1.0.4/EpiReport/DESCRIPTION | 7 EpiReport-1.0.4/EpiReport/MD5 | 8 EpiReport-1.0.4/EpiReport/NEWS.md |only EpiReport-1.0.4/EpiReport/README.md | 41 +- EpiReport-1.0.4/EpiReport/inst/doc/EpiReport_Vignette.html | 217 ++++++------- 6 files changed, 139 insertions(+), 134 deletions(-)
Title: Archetypal Analysis
Description: The main function archetypes implements a
framework for archetypal analysis supporting arbitrary
problem solving mechanisms for the different conceptual
parts of the algorithm.
Author: Manuel J. A. Eugster [aut, cre, cph],
Friedrich Leisch [aut],
Sohan Seth [ctb]
Maintainer: Manuel J. A. Eugster <manuel@mjae.net>
Diff between archetypes versions 2.2-0.1 dated 2019-04-22 and 2.2-0.2 dated 2025-05-02
DESCRIPTION | 22 +++++++------ MD5 | 15 +++++---- NEWS | 7 ++++ R/body.R |only R/skel.R |only R/toy.R |only build/vignette.rds |binary inst/CITATION | 76 +++++++++++++++--------------------------------- inst/doc/archetypes.pdf |binary man/as.archetypes.Rd | 2 - 10 files changed, 54 insertions(+), 68 deletions(-)
Title: Functional Analysis of Phenotypic Growth Data to Smooth and
Extract Traits
Description: Assists in the plotting and functional smoothing of traits
measured over time and the extraction of features from these traits,
implementing the SET (Smoothing and Extraction of Traits) method
described in Brien et al. (2020) Plant Methods, 16. Smoothing of
growth trends for individual plants using natural cubic smoothing
splines or P-splines is available for removing transient effects and
segmented smoothing is available to deal with discontinuities in
growth trends. There are graphical tools for assessing the adequacy
of trait smoothing, both when using this and other packages, such as
those that fit nonlinear growth models. A range of per-unit (plant,
pot, plot) growth traits or features can be extracted from the
data, including single time points, interval growth rates and other
growth statistics, such as maximum growth or days to maximum growth.
The package also has tools adapted to inputting data from
high-throughput phenotyping facilities, such from a Lemna-Tec
Scananalyzer 3D ( [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between growthPheno versions 3.1.11 dated 2025-04-02 and 3.1.12 dated 2025-05-02
DESCRIPTION | 12 - MD5 | 22 +-- NAMESPACE | 1 R/byIndv4Times.r | 2 R/traitExtract.r | 260 +++++++++++++++++++------------------ build/partial.rdb |binary build/vignette.rds |binary inst/News.Rd | 4 inst/doc/Rice.pdf |binary inst/doc/Tomato.pdf |binary inst/doc/growthPheno-manual.pdf |binary tests/testthat/testTraitWrappers.r | 15 ++ 12 files changed, 172 insertions(+), 144 deletions(-)
Title: Allele Frequency Data for Human Genetic Markers
Description: Provides allele frequency data for Short Tandem Repeat human
genetic markers commonly used in forensic genetics for human
identification and kinship analysis. Includes published population
frequency data from the US National Institute of Standards and
Technology, Federal Bureau of Investigation and the UK government.
Author: Maarten Kruijver [aut, cre]
Maintainer: Maarten Kruijver <maarten.kruijver@esr.cri.nz>
Diff between forensicpopdata versions 1.0.2 dated 2025-04-28 and 1.0.4 dated 2025-05-02
DESCRIPTION | 13 ++- MD5 | 29 ++++---- NAMESPACE | 10 +-- NEWS.md | 9 ++ R/FBI2015freqs-data.R |only R/allele_counts_to_freqs.R | 2 README.md | 12 ++- build/partial.rdb |binary data/FBI2015freqs.rda |only data/NIST1036freqs.rda |binary data/UKDNA17freqs.rda |binary man/FBI2015freqs.Rd |only man/NIST1036freqs.Rd | 140 +++++++++++++++++++++--------------------- man/UKDNA17freqs.Rd | 98 ++++++++++++++--------------- man/allele_counts_to_freqs.Rd | 68 ++++++++++---------- man/read_STRidER_xml.Rd | 78 +++++++++++------------ man/read_allele_freqs.Rd | 68 ++++++++++---------- 17 files changed, 270 insertions(+), 257 deletions(-)
More information about forensicpopdata at CRAN
Permanent link
Title: Embedding 'exams' Exercises as Forms in 'rmarkdown' or 'quarto'
Documents
Description: Automatic generation of quizzes or individual questions as (interactive) forms within 'rmarkdown' or 'quarto' documents based on 'R/exams' exercises.
Author: Achim Zeileis [aut, cre] ,
Reto Stauffer [aut] ,
Dale Barr [ctb] ,
Lisa DeBruine [ctb] ,
Florian Stampfer [ctb] ,
Jonas Tscholl [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams2forms versions 0.1-0 dated 2024-11-06 and 0.2-0 dated 2025-05-02
exams2forms-0.1-0/exams2forms/inst/forms/quiz2.Rmd |only exams2forms-0.2-0/exams2forms/DESCRIPTION | 25 exams2forms-0.2-0/exams2forms/MD5 | 37 exams2forms-0.2-0/exams2forms/NAMESPACE | 4 exams2forms-0.2-0/exams2forms/NEWS.md | 50 + exams2forms-0.2-0/exams2forms/R/auxiliary.R |only exams2forms-0.2-0/exams2forms/R/exams2forms.R | 137 ++- exams2forms-0.2-0/exams2forms/R/exams2webquiz.R | 4 exams2forms-0.2-0/exams2forms/R/forms.R | 192 ++-- exams2forms-0.2-0/exams2forms/build/vignette.rds |binary exams2forms-0.2-0/exams2forms/inst/doc/exams2forms.R | 6 exams2forms-0.2-0/exams2forms/inst/doc/exams2forms.Rmd | 17 exams2forms-0.2-0/exams2forms/inst/doc/exams2forms.html | 643 ++++++++++------ exams2forms-0.2-0/exams2forms/inst/exercises |only exams2forms-0.2-0/exams2forms/inst/forms/questions.html |only exams2forms-0.2-0/exams2forms/inst/forms/quiz.html |only exams2forms-0.2-0/exams2forms/inst/webex/webex.css | 61 + exams2forms-0.2-0/exams2forms/inst/webex/webex.js | 339 ++++++-- exams2forms-0.2-0/exams2forms/man/exams2forms.Rd | 32 exams2forms-0.2-0/exams2forms/man/forms_schoice.Rd | 28 exams2forms-0.2-0/exams2forms/vignettes/exams2forms.Rmd | 17 21 files changed, 1079 insertions(+), 513 deletions(-)
Title: Process Stream Temperature, Intermittency, and Conductivity
(STIC) Sensor Data
Description: A collection of functions for processing raw data from Stream Temperature, Intermittency, and Conductivity (STIC) loggers. 'STICr' (pronounced "sticker") includes functions for tidying, calibrating, classifying, and doing quality checks on data from STIC sensors. Some package functionality is described in Wheeler/Zipper et al. (2023) <doi:10.31223/X5636K>.
Author: Sam Zipper [aut, cre, cph] ,
Christopher T. Wheeler [aut] ,
Stephen Cook [ctb] ,
Delaney Peterson [ctb] ,
Sarah Godsey [ctb]
Maintainer: Sam Zipper <samzipper@ku.edu>
Diff between STICr versions 1.1 dated 2024-12-02 and 1.1.1 dated 2025-05-02
DESCRIPTION | 18 ++++++++-------- MD5 | 29 +++++++++++++------------- NEWS.md | 7 ++++++ R/apply_calibration.R | 2 - R/classify_wetdry.R | 25 ++++++++++++++++++++-- R/get_calibration.R | 2 - R/tidy_hobo_data.R | 2 - build/vignette.rds |binary inst/CITATION |only inst/doc/intro-to-STICr.html | 6 ++--- man/apply_calibration.Rd | 2 - man/classify_wetdry.Rd | 2 - man/figures/README-plot-classified-data-1.png |binary man/figures/README-validate-data-1.png |binary man/get_calibration.Rd | 2 - man/tidy_hobo_data.Rd | 2 - 16 files changed, 65 insertions(+), 34 deletions(-)
Title: Visualization Tools for Geographically Weighted Models
Description: The increasing popularity of geographically weighted (GW) techniques has resulted in the development of several R packages, such as 'GWmodel'. To facilitate their usages, 'GWmodelVis' provides a 'shiny'-based interactive visualization toolkit for geographically weighted (GW) models.
It includes a number of visualization tools, including dynamic mapping of parameter surfaces, statistical visualization, sonification and exporting videos via 'FFmpeg'.
Author: Binbin Lu [aut, cre],
Huimei Wang [aut]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodelVis versions 1.0.0 dated 2025-04-22 and 1.0.1 dated 2025-05-02
DESCRIPTION | 12 +- MD5 | 10 - NAMESPACE | 1 inst/GWmodelVisApp/server.R | 255 +++++++++++++++++++++++++------------------- inst/GWmodelVisApp/ui.R | 10 + man/GWmodelVis-package.Rd | 4 6 files changed, 173 insertions(+), 119 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-29 0.8.3
2022-09-15 0.8.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-15 1.0.4
2024-03-06 1.0.3
2023-08-22 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-17 0.2.0
2024-12-11 0.1.0