Title: Lightweight Extension of the Base R Graphics System
Description: Lightweight extension of the base R graphics system, with support
for automatic legends, facets, themes, and various other enhancements.
Author: Grant McDermott [aut, cre] ,
Vincent Arel-Bundock [aut] ,
Achim Zeileis [aut] ,
Etienne Bacher [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
Diff between tinyplot versions 0.4.0 dated 2025-05-22 and 0.4.1 dated 2025-06-02
tinyplot-0.4.0/tinyplot/man/figures/logo.png |only tinyplot-0.4.1/tinyplot/DESCRIPTION | 10 +++++----- tinyplot-0.4.1/tinyplot/MD5 | 18 +++++++++--------- tinyplot-0.4.1/tinyplot/NEWS.md | 17 ++++++++++++++--- tinyplot-0.4.1/tinyplot/R/by_aesthetics.R | 3 +++ tinyplot-0.4.1/tinyplot/R/tinyplot.R | 2 +- tinyplot-0.4.1/tinyplot/R/type_function.R | 5 +++-- tinyplot-0.4.1/tinyplot/README.md | 24 ++++++++++++++---------- tinyplot-0.4.1/tinyplot/inst |only tinyplot-0.4.1/tinyplot/man/tinyplot-package.Rd | 2 -- tinyplot-0.4.1/tinyplot/man/type_function.Rd | 5 +++-- 11 files changed, 52 insertions(+), 34 deletions(-)
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2025) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 1.0.1 dated 2025-03-25 and 1.1.0 dated 2025-06-02
RNAmf-1.0.1/RNAmf/R/RNAmf_three_level.R |only RNAmf-1.0.1/RNAmf/R/RNAmf_two_level.R |only RNAmf-1.0.1/RNAmf/man/RNAmf_three_level.Rd |only RNAmf-1.0.1/RNAmf/man/RNAmf_two_level.Rd |only RNAmf-1.1.0/RNAmf/DESCRIPTION | 8 RNAmf-1.1.0/RNAmf/MD5 | 43 - RNAmf-1.1.0/RNAmf/NAMESPACE | 3 RNAmf-1.1.0/RNAmf/R/ALC.R | 116 ++-- RNAmf-1.1.0/RNAmf/R/ALD.R | 89 +-- RNAmf-1.1.0/RNAmf/R/ALM.R | 51 - RNAmf-1.1.0/RNAmf/R/ALMC.R | 31 - RNAmf-1.1.0/RNAmf/R/GP.R | 12 RNAmf-1.1.0/RNAmf/R/NestedX.R | 72 +- RNAmf-1.1.0/RNAmf/R/RNAmf.R |only RNAmf-1.1.0/RNAmf/R/functions.R | 6 RNAmf-1.1.0/RNAmf/R/matGP.R | 12 RNAmf-1.1.0/RNAmf/R/predict.RNAmf.R | 807 +++-------------------------- RNAmf-1.1.0/RNAmf/R/xifun.R |only RNAmf-1.1.0/RNAmf/R/zetafun.R | 259 ++------- RNAmf-1.1.0/RNAmf/man/ALC_RNAmf.Rd | 12 RNAmf-1.1.0/RNAmf/man/ALD_RNAmf.Rd | 4 RNAmf-1.1.0/RNAmf/man/ALMC_RNAmf.Rd | 4 RNAmf-1.1.0/RNAmf/man/ALM_RNAmf.Rd | 4 RNAmf-1.1.0/RNAmf/man/NestedX.Rd | 20 RNAmf-1.1.0/RNAmf/man/RNAmf.Rd |only RNAmf-1.1.0/RNAmf/man/predict.Rd | 39 - 26 files changed, 419 insertions(+), 1173 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means. See Walvoort et al. (2010)
<doi:10.1016/j.cageo.2010.04.005> for details.
Author: Dennis Walvoort [aut, cre, cph] ,
Dick Brus [aut, cph] ,
Jaap de Gruijter [aut, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between spcosa versions 0.4-2 dated 2023-04-11 and 0.4-3 dated 2025-06-02
DESCRIPTION | 14 +++--- MD5 | 40 ++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 10 +++- inst/doc/spcosa.R | 38 ++++++++-------- inst/doc/spcosa.Rmd | 2 inst/doc/spcosa.html | 54 ++++++++++++------------ man/CompactStratification-class.Rd | 8 +-- man/CompactStratificationEqualArea-class.Rd | 4 - man/CompactStratificationPriorPoints-class.Rd | 6 +- man/SamplingPattern-class.Rd | 4 - man/SamplingPatternCentroids-class.Rd | 2 man/SamplingPatternPriorPoints-class.Rd | 2 man/SamplingPatternPurposive-class.Rd | 2 man/SamplingPatternRandom-class.Rd | 2 man/SamplingPatternRandomComposite-class.Rd | 4 - man/SamplingPatternRandomSamplingUnits-class.Rd | 2 man/spcosa-package.Rd | 2 man/stratify-methods.Rd | 8 +-- vignettes/spcosa.Rmd | 2 21 files changed, 107 insertions(+), 99 deletions(-)
Title: Evaluation of 3D Meteorological and Air Quality Models
Description: Provides tools for post-process, evaluate and visualize results from 3d Meteorological and Air Quality models against point observations (i.e. surface stations) and grid (i.e. satellite) observations.
Author: Daniel Schuch [aut, cre]
Maintainer: Daniel Schuch <underschuch@gmail.com>
Diff between eva3dm versions 0.99.1 dated 2024-11-25 and 1.11 dated 2025-06-02
DESCRIPTION | 14 - MD5 | 83 +++++--- NAMESPACE | 85 ++++---- NEWS.md | 10 + R/daily.R | 34 ++- R/eva.R | 42 +++- R/extract_serie.R | 63 ++++-- R/hourly.R | 17 + R/ma8h.R | 6 R/mda8.R | 6 R/plot_diff.R | 27 +- R/plot_overlay.R | 42 +++- R/plot_rast.R | 98 ++++++++-- R/rast_to_netcdf.R | 2 R/sat.R | 58 ++++-- R/select.R |only R/templates.R | 335 ++++++++++++++++++++++++++++++++++- R/wrf_rast.R | 12 - build |only inst/CITATION |only inst/doc |only inst/extdata/METAR_MASP_jan_2016.Rds |only inst/extdata/metar.T2.Rds |only inst/extdata/model.d03.T2.Rds |only inst/extdata/riem_OAHR_jan_2012.Rds |only inst/extdata/riem_OAKB_jan_2012.Rds |only inst/extdata/sites_ISD.Rds |only man/daily.Rd | 19 + man/eva.Rd | 18 + man/extract_serie.Rd | 17 + man/grapes-IN-grapes.Rd | 120 ++++++------ man/grapes-at-grapes.Rd | 78 ++++---- man/hourly.Rd | 17 + man/ma8h.Rd | 3 man/mda8.Rd | 3 man/overlay.Rd | 11 + man/plot_diff.Rd | 11 - man/plot_rast.Rd | 9 man/rast_to_netcdf.Rd | 2 man/sat.Rd | 25 ++ man/select.Rd |only man/template.Rd | 10 - tests/testthat.R | 24 +- tests/testthat/test-rast.R | 2 tests/testthat/test-sat-cate-io.R | 1 tests/testthat/test-select.R |only tests/testthat/test-templates.R | 5 vignettes |only 48 files changed, 989 insertions(+), 320 deletions(-)
Title: Fast 'JSON', 'NDJSON' and 'GeoJSON' Parser and Generator
Description: A fast 'JSON' parser, generator and validator which converts 'JSON',
'NDJSON' (Newline Delimited 'JSON') and 'GeoJSON' (Geographic 'JSON') data
to/from R objects. The standard R data types are
supported (e.g. logical, numeric, integer) with configurable handling of NULL
and NA values. Data frames, atomic vectors and lists are all supported as data
containers translated to/from 'JSON'. 'GeoJSON' data is read in as
'simple features' objects.
This implementation wraps the 'yyjson' 'C' library which
is available from <https://github.com/ibireme/yyjson>.
Author: Mike Cheng [aut, cre, cph],
Yao Yuan [aut, cph] ,
Murat Tasan [ctb]
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Diff between yyjsonr versions 0.1.20 dated 2024-04-10 and 0.1.21 dated 2025-06-02
DESCRIPTION | 20 LICENSE | 2 MD5 | 112 NAMESPACE | 4 NEWS.md | 20 R/geojson.R | 13 R/json-opts.R | 29 R/json.R | 31 R/ndjson.R | 101 R/utils.R | 19 build/vignette.rds |binary inst/doc/from_json_options.R | 12 inst/doc/from_json_options.Rmd | 4 inst/doc/from_json_options.html | 11 inst/doc/jsonlite-comparison.html | 5 inst/doc/to_json_options.R | 12 inst/doc/to_json_options.Rmd | 4 inst/doc/to_json_options.html | 11 man/as_scalar.Rd |only man/figures/benchmark-geojson.png |binary man/figures/benchmark-ndjson.png |binary man/figures/benchmark-summary.png |binary man/opts_read_json.Rd | 10 man/opts_write_json.Rd | 21 man/read_geojson_str.Rd | 4 man/read_json_conn.Rd | 1 man/read_json_file.Rd | 1 man/read_json_raw.Rd | 1 man/read_json_str.Rd | 1 man/read_ndjson_file.Rd | 1 man/read_ndjson_raw.Rd |only man/read_ndjson_str.Rd | 5 man/write_geojson_str.Rd | 2 man/write_json_file.Rd | 2 man/write_json_raw.Rd |only man/write_json_str.Rd | 2 man/write_ndjson_file.Rd | 2 man/write_ndjson_raw.Rd |only man/write_ndjson_str.Rd | 4 man/yyjson_version.Rd | 3 src/R-yyjson-parse.c | 319 - src/R-yyjson-parse.h | 2 src/R-yyjson-serialize.c | 282 - src/R-yyjson-serialize.h | 3 src/geojson-parse.c | 441 - src/geojson-serialize.c | 112 src/init.c | 12 src/ndjson-parse.c | 315 - src/ndjson-serialize.c | 109 src/utils.c | 4 src/yyjson.c | 3799 ++++++++++------ src/yyjson.h | 1350 +++-- tests/testthat/test-bug44-infinite-loop-on-bad-string.R |only tests/testthat/test-digits-secs.R |only tests/testthat/test-ndjson-raw-io.R |only tests/testthat/test-opt-digits-promote.R |only tests/testthat/test-opt-digits-signif.R |only tests/testthat/test-opt-json-verbatim.R |only tests/testthat/test-read-number-as-raw.R |only tests/testthat/test-scalar-atomics.R |only tests/testthat/test-single-null.R |only tests/testthat/test-write-json-raw.R |only vignettes/from_json_options.Rmd | 4 vignettes/to_json_options.Rmd | 4 64 files changed, 4628 insertions(+), 2598 deletions(-)
Title: Cluster Analysis via Random Partition Distributions
Description: Cluster analysis is performed using pairwise distance information and a random partition distribution. The method is
implemented for two random partition distributions. It draws samples and then obtains and plots clustering estimates.
An implementation of a selection algorithm is provided for the mass parameter of the partition distribution. Since
pairwise distances are the principal input to this procedure, it is most comparable to the hierarchical and k-medoids
clustering methods. The method is Dahl, Andros, Carter (2022+) <doi:10.1002/sam.11602>.
Author: David B. Dahl [aut, cre] ,
R. Jacob Andros [aut] ,
J. Brandon Carter [aut] ,
Alex Crichton [ctb] ,
Brendan Zabarauskas [ctb] ,
David B. Dahl [ctb] ,
David Tolnay [ctb] ,
Jim Turner [ctb] ,
Jorge Aparicio [ctb] ,
Josh Stone [ctb] ,
Mikhail Vorotilov [ [...truncated...]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between caviarpd versions 0.3.16 dated 2025-04-07 and 0.3.20 dated 2025-06-02
DESCRIPTION | 17 MD5 | 34 NEWS | 8 src/Makevars.win | 6 src/rust/Cargo.lock | 91 src/rust/Cargo.toml | 15 src/rust/epa/Cargo.lock | 49 src/rust/epa/Cargo.toml | 2 src/rust/epa/src/clust.rs | 4 src/rust/rbindings/Cargo.lock | 2 src/rust/rbindings/src/lib.rs | 8364 --------------------------------------- src/rust/roxido/Cargo.lock | 2 src/rust/roxido/src/lib.rs | 10 src/rust/roxido_macro/Cargo.lock | 2 src/rust/roxido_macro/src/lib.rs | 9 src/rust/src/lib.rs | 8 src/rust/vendor.tar.gz |binary tools/build_rust_library.R | 14 18 files changed, 210 insertions(+), 8427 deletions(-)
Title: A Faster Implementation of the Poisson-Binomial Distribution
Description: Provides the probability, distribution, and quantile functions and random number generator for the Poisson-Binomial distribution. This package relies on FFTW to implement the discrete Fourier transform, so that it is much faster than the existing implementation of the same algorithm in R.
Author: Santiago Olivella [aut, cre],
Yuki Shiraito [aut]
Maintainer: Santiago Olivella <olivella@unc.edu>
Diff between poisbinom versions 1.0.1 dated 2017-05-19 and 1.0.2 dated 2025-06-02
DESCRIPTION | 23 +++++++++++++++-------- MD5 | 3 ++- README.md |only 3 files changed, 17 insertions(+), 9 deletions(-)
Title: NASCAR Race Data
Description: A collection of NASCAR race, driver, owner and manufacturer data across the three major NASCAR divisions: NASCAR Cup Series, NASCAR Xfinity Series, and NASCAR Craftsman Truck Series. The curated data begins with the 1949 season and extends through the end of the 2024 season. Explore race, season, or career performance for drivers, teams, and manufacturers throughout NASCAR's history. Data was sourced with permission from DriverAverages.com.
Author: Kyle Grealis [aut, cre] ,
Nick Triplett [ctb],
Gabriel Odom [ctb]
Maintainer: Kyle Grealis <kylegrealis@icloud.com>
Diff between nascaR.data versions 2.2.1 dated 2025-05-15 and 2.2.2 dated 2025-06-02
nascaR.data-2.2.1/nascaR.data/R/get_driver.R |only nascaR.data-2.2.1/nascaR.data/R/get_manufacturer.R |only nascaR.data-2.2.1/nascaR.data/R/get_team.R |only nascaR.data-2.2.1/nascaR.data/inst/by-year |only nascaR.data-2.2.1/nascaR.data/inst/updates/nascar_update.R |only nascaR.data-2.2.1/nascaR.data/inst/updates/run_debug.R |only nascaR.data-2.2.1/nascaR.data/inst/updates/run_update.R |only nascaR.data-2.2.2/nascaR.data/DESCRIPTION | 6 nascaR.data-2.2.2/nascaR.data/MD5 | 193 +---------- nascaR.data-2.2.2/nascaR.data/NAMESPACE | 7 nascaR.data-2.2.2/nascaR.data/NEWS.md | 66 ++- nascaR.data-2.2.2/nascaR.data/R/data.R | 4 nascaR.data-2.2.2/nascaR.data/R/find.R |only nascaR.data-2.2.2/nascaR.data/R/nascaR.data-package.R | 4 nascaR.data-2.2.2/nascaR.data/README.md | 12 nascaR.data-2.2.2/nascaR.data/data/cup_series.rda |binary nascaR.data-2.2.2/nascaR.data/data/truck_series.rda |binary nascaR.data-2.2.2/nascaR.data/data/xfinity_series.rda |binary nascaR.data-2.2.2/nascaR.data/inst/updates/run_all_updates.R |only nascaR.data-2.2.2/nascaR.data/inst/updates/update_cup.R |only nascaR.data-2.2.2/nascaR.data/inst/updates/update_truck.R |only nascaR.data-2.2.2/nascaR.data/inst/updates/update_xfinity.R |only nascaR.data-2.2.2/nascaR.data/man/cup_series.Rd | 1 nascaR.data-2.2.2/nascaR.data/man/find_driver.Rd |only nascaR.data-2.2.2/nascaR.data/man/find_manufacturer.Rd |only nascaR.data-2.2.2/nascaR.data/man/find_team.Rd |only nascaR.data-2.2.2/nascaR.data/man/get_driver_info.Rd | 59 +-- nascaR.data-2.2.2/nascaR.data/man/get_manufacturer_info.Rd | 64 +-- nascaR.data-2.2.2/nascaR.data/man/get_team_info.Rd | 59 +-- nascaR.data-2.2.2/nascaR.data/man/truck_series.Rd | 1 nascaR.data-2.2.2/nascaR.data/man/xfinity_series.Rd | 2 31 files changed, 157 insertions(+), 321 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut, cre]
Maintainer: Christina De Cesaris <cmdecesaris@ucdavis.edu>
Diff between vectorsurvR versions 1.3.2 dated 2025-04-22 and 1.4.0 dated 2025-06-02
DESCRIPTION | 8 MD5 | 49 - NAMESPACE | 16 R/data.R | 2 R/getAbundance.R | 14 R/getAbundanceAnomaly.R | 8 R/getAbundanceMapData.R | 87 -- R/getArthroCollections.R | 409 ++++++------ R/getPools.R | 249 +++---- R/getRegions.R | 61 - R/getSites.R | 64 - R/getSpatialFeatures.R | 135 ++- R/getToken.R | 62 - R/globals.R | 4 R/utils-dplyr-aliases.R |only README.md | 352 ++-------- data/sample_collections.rda |binary inst/doc/vectorsurvR.html | 1017 ++++++++++++++++++++++++------ man/getAbundanceAnomaly.Rd | 2 man/getAbundanceMapData.Rd | 2 man/getArthroCollections.Rd | 13 man/getPools.Rd | 4 man/getSpatialFeatures.Rd | 14 man/getToken.Rd | 4 man/sample_collections.Rd | 1 tests/testthat/test-getAbundanceMapData.R | 2 26 files changed, 1539 insertions(+), 1040 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph] ,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.44.0 dated 2025-05-07 and 1.45.0 dated 2025-06-02
parallelly-1.44.0/parallelly/inst/test-data/mixed-cgroups/piavpn-cgroups.tar.gz |only parallelly-1.44.0/parallelly/inst/test-data/mixed-cgroups/slurm-cgroups.tar.gz |only parallelly-1.45.0/parallelly/DESCRIPTION | 7 parallelly-1.45.0/parallelly/MD5 | 120 +++---- parallelly-1.45.0/parallelly/NEWS.md | 44 ++ parallelly-1.45.0/parallelly/R/availableCores.R | 33 + parallelly-1.45.0/parallelly/R/availableWorkers.R | 6 parallelly-1.45.0/parallelly/R/cgroups.R | 74 +++- parallelly-1.45.0/parallelly/R/cloneNode.R | 4 parallelly-1.45.0/parallelly/R/isNodeAlive.R | 26 - parallelly-1.45.0/parallelly/R/killNode.R | 167 ++++++++-- parallelly-1.45.0/parallelly/R/launchNodePSOCK.R | 1 parallelly-1.45.0/parallelly/R/makeClusterPSOCK.R | 1 parallelly-1.45.0/parallelly/R/makeClusterSequential.R | 5 parallelly-1.45.0/parallelly/R/makeNodePSOCK.R | 27 + parallelly-1.45.0/parallelly/R/options.R | 61 ++- parallelly-1.45.0/parallelly/R/testme.R | 4 parallelly-1.45.0/parallelly/R/utils,cluster.R | 25 + parallelly-1.45.0/parallelly/inst/WORDLIST | 2 parallelly-1.45.0/parallelly/inst/doc/parallelly-10-local-workers.html | 4 parallelly-1.45.0/parallelly/inst/doc/parallelly-10-local-workers.md | 4 parallelly-1.45.0/parallelly/inst/doc/parallelly-12-remote-workers.html | 26 - parallelly-1.45.0/parallelly/inst/doc/parallelly-12-remote-workers.md | 26 - parallelly-1.45.0/parallelly/inst/doc/parallelly-17-hpc-workers.html | 8 parallelly-1.45.0/parallelly/inst/doc/parallelly-17-hpc-workers.md | 8 parallelly-1.45.0/parallelly/inst/doc/parallelly-22-wine-workers.html | 12 parallelly-1.45.0/parallelly/inst/doc/parallelly-22-wine-workers.md | 13 parallelly-1.45.0/parallelly/inst/test-data/mixed-cgroups/piavpn.tar.gz |only parallelly-1.45.0/parallelly/inst/test-data/mixed-cgroups/slurm.tar.gz |only parallelly-1.45.0/parallelly/inst/test-data/mixed-cgroups/wsl2-invalid-mounts.R |only parallelly-1.45.0/parallelly/inst/test-data/mixed-cgroups/wsl2-invalid-mounts.tar.gz |only parallelly-1.45.0/parallelly/inst/testme/deploy.R | 8 parallelly-1.45.0/parallelly/inst/testme/run.R | 124 ++++++- parallelly-1.45.0/parallelly/inst/testme/test-cgroups.R | 1 parallelly-1.45.0/parallelly/inst/testme/test-killNode.R | 2 parallelly-1.45.0/parallelly/man/availableCores.Rd | 10 parallelly-1.45.0/parallelly/man/availableWorkers.Rd | 5 parallelly-1.45.0/parallelly/man/killNode.Rd | 39 +- parallelly-1.45.0/parallelly/man/makeClusterPSOCK.Rd | 15 parallelly-1.45.0/parallelly/man/makeClusterSequential.Rd | 6 parallelly-1.45.0/parallelly/man/zzz-parallelly.options.Rd | 60 ++- parallelly-1.45.0/parallelly/tests/test-all.equal.connection.R | 2 parallelly-1.45.0/parallelly/tests/test-as.cluster.R | 2 parallelly-1.45.0/parallelly/tests/test-availableCores.R | 2 parallelly-1.45.0/parallelly/tests/test-availableWorkers.R | 2 parallelly-1.45.0/parallelly/tests/test-cgroups.R | 2 parallelly-1.45.0/parallelly/tests/test-cpuLoad.R | 2 parallelly-1.45.0/parallelly/tests/test-freeCores.R | 2 parallelly-1.45.0/parallelly/tests/test-freePort.R | 2 parallelly-1.45.0/parallelly/tests/test-isConnectionValid.R | 2 parallelly-1.45.0/parallelly/tests/test-isForkedChild.R | 2 parallelly-1.45.0/parallelly/tests/test-killNode.R | 2 parallelly-1.45.0/parallelly/tests/test-makeClusterMPI.R | 2 parallelly-1.45.0/parallelly/tests/test-makeClusterPSOCK.R | 2 parallelly-1.45.0/parallelly/tests/test-makeClusterSequential.R | 2 parallelly-1.45.0/parallelly/tests/test-options-and-envvars.R | 2 parallelly-1.45.0/parallelly/tests/test-r_bug18119.R | 2 parallelly-1.45.0/parallelly/tests/test-startup.R | 2 parallelly-1.45.0/parallelly/tests/test-utils,cluster.R | 2 parallelly-1.45.0/parallelly/tests/test-utils.R | 2 parallelly-1.45.0/parallelly/vignettes/parallelly-10-local-workers.md | 4 parallelly-1.45.0/parallelly/vignettes/parallelly-12-remote-workers.md | 26 - parallelly-1.45.0/parallelly/vignettes/parallelly-17-hpc-workers.md | 8 parallelly-1.45.0/parallelly/vignettes/parallelly-22-wine-workers.md | 13 64 files changed, 747 insertions(+), 320 deletions(-)
Title: Toolkit Implementation of gWidgets2 for tcltk
Description: Port of the 'gWidgets2' API for the 'tcltk' package.
Author: John Verzani [aut, cre]
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgets2tcltk versions 1.0-8 dated 2022-02-16 and 1.0-9 dated 2025-06-02
gWidgets2tcltk-1.0-8/gWidgets2tcltk/inst/tklibs/tablelist5.6/demos |only gWidgets2tcltk-1.0-8/gWidgets2tcltk/inst/tklibs/tablelist5.6/doc |only gWidgets2tcltk-1.0-8/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/mwutil.tcl |only gWidgets2tcltk-1.0-8/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/repair.tcl |only gWidgets2tcltk-1.0-8/gWidgets2tcltk/inst/tklibs/tablelist5.6/tablelistPublic.tcl |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/DESCRIPTION | 15 gWidgets2tcltk-1.0-9/gWidgets2tcltk/MD5 | 148 gWidgets2tcltk-1.0-9/gWidgets2tcltk/R/gnotebook.R | 19 gWidgets2tcltk-1.0-9/gWidgets2tcltk/R/gtoolbar.R | 5 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/autoscroll.man | 7 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/autoscroll.tcl | 2 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/pkgIndex.tcl | 37 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/CHANGES.txt | 1624 ++ gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/COPYRIGHT.txt | 4 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/ChangeLog |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/README.txt | 91 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/pkgIndex.tcl | 19 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/pencil.cur |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistBind.tcl | 3046 +++- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistConfig.tcl | 2211 ++- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistEdit.tcl | 1635 +- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistImages.tcl | 5204 +++++--- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistMove.tcl | 225 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistSort.tcl | 211 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistThemes.tcl | 1335 +- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistUtil.tcl | 3835 ++++-- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tablelistWidget.tcl | 6383 +++++++--- gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/tclIndex | 523 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/scripts/utils |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/tablelist.tcl | 14 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/tablelistCommon.tcl |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tablelist5.6/tablelist_tile.tcl | 19 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/ChangeLog | 97 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/pkgIndex.tcl | 2 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/tipstack.man |only gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/tipstack.tcl | 5 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/tooltip.man | 148 gWidgets2tcltk-1.0-9/gWidgets2tcltk/inst/tklibs/tooltip1.4/tooltip.tcl | 455 gWidgets2tcltk-1.0-9/gWidgets2tcltk/man/gWidgets2tcltk-undocumented.Rd | 8 39 files changed, 19708 insertions(+), 7619 deletions(-)
More information about gWidgets2tcltk at CRAN
Permanent link
Title: Almost Linear-Time k-Medoids Clustering
Description: Interface to a high-performance implementation of k-medoids clustering described in Tiwari, Zhang, Mayclin, Thrun, Piech and Shomorony (2020) "BanditPAM: Almost Linear Time k-medoids Clustering via Multi-Armed Bandits" <https://proceedings.neurips.cc/paper/2020/file/73b817090081cef1bca77232f4532c5d-Paper.pdf>.
Author: Balasubramanian Narasimhan [aut, cre],
Mo Tiwari [aut]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between banditpam versions 1.0-1 dated 2023-03-15 and 1.0-2 dated 2025-06-02
DESCRIPTION | 12 +- MD5 | 36 +++--- NEWS.md | 11 +- R/BanditPAM-package.R | 3 R/KMedoid.R | 8 + R/RcppExports.R | 4 README.md | 8 + build/vignette.rds |binary configure | 252 ++++++++++++++++++++++------------------------- configure.ac | 4 inst/doc/kmediods.R | 10 + inst/doc/kmediods.Rmd | 8 + inst/doc/kmediods.html | 26 +++- man/KMedoids.Rd | 14 ++ man/banditpam-package.Rd | 8 + man/figures/logo.png |binary src/RcppExports.cpp | 14 ++ src/kmedoids.cpp | 19 +++ vignettes/kmediods.Rmd | 8 + 19 files changed, 271 insertions(+), 174 deletions(-)
Title: Support for Secure API Key Management
Description: Secure handling of API keys can be difficult. This package provides
secure convenience functions for
entering / handling API keys and opening connections via inversion of control
on those keys. Works seamlessly between production and developer environments.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Hui Wu [aut],
Cole Beck [aut],
Savannah Obregon [aut]
Maintainer: Shawn Garbett <Shawn.Garbett@vumc.org>
Diff between shelter versions 0.2.0 dated 2025-05-29 and 0.2.1 dated 2025-06-02
DESCRIPTION | 6 - MD5 | 24 +++-- NAMESPACE | 3 NEWS | 7 + R/key.R | 2 R/unlock.R | 110 ++++++++++++++++----------- R/unsafe_export.R |only man/key_exists.Rd | 2 man/unlockKeys.Rd | 61 +++++++++----- man/unsafe_export.Rd |only tests/testthat/test-100-unlockYamlOverride.R | 2 tests/testthat/test-102-unlockKeyring.R | 29 +++++-- tests/testthat/test-103-unlockAlgorithm.R | 2 tests/testthat/test-104-unlockKeys.R | 18 ++++ 14 files changed, 179 insertions(+), 87 deletions(-)
Title: Assesses the Quality of Estimates Made by Complex Sample Designs
Description: Assesses the quality of estimates made by complex sample designs,
following the methodology developed by the National Institute of Statistics Chile (Household Survey Standard 2020, <https://www.ine.cl/docs/default-source/institucionalidad/buenas-pr%C3%A1cticas/clasificaciones-y-estandares/est%C3%A1ndar-evaluaci%C3%B3n-de-calidad-de-estimaciones-publicaci%C3%B3n-27022020.pdf>), (Economics Survey Standard 2024, <https://www.ine.gob.cl/docs/default-source/buenas-practicas/directrices-metodologicas/estandares/documentos/est%C3%A1ndar-evaluaci%C3%B3n-de-calidad-de-estimaciones-econ%C3%B3micas.pdf?sfvrsn=201fbeb9_2>)
and by Economic Commission for Latin America and
Caribbean (2020, <https://repositorio.cepal.org/bitstream/handle/11362/45681/1/S2000293_es.pdf>), (2024, <https://repositorio.cepal.org/server/api/core/bitstreams/f04569e6-4f38-42e7-a32b-e0b298e0ab9c/content>).
Author: Klaus Lehmann [aut, cre],
Ricardo Pizarro [aut],
Ignacio Agloni [ctb],
Andrea Lopez [ctb],
Javiera Preuss [ctb]
Maintainer: Klaus Lehmann <klehmann@fen.uchile.cl>
Diff between calidad versions 0.8.0 dated 2025-04-15 and 0.8.1 dated 2025-06-02
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 7 - R/create_internal.R | 217 +++++++++++++++++++++++++++---- R/evaluate_internal.R | 4 inst/doc/tutorial.html | 36 ++--- tests/testthat/test-evaluate_external.R | 8 - tests/testthat/test-internal_functions.R | 102 ++++++++++++++ 8 files changed, 326 insertions(+), 70 deletions(-)
Title: Adaptive Multivariate Integration over Hypercubes
Description: R wrappers around the cubature C library of Steven
G. Johnson for adaptive multivariate integration over hypercubes
and the Cuba C library of Thomas Hahn for deterministic and
Monte Carlo integration. Scalar and vector interfaces for
cubature and Cuba routines are provided; the vector interfaces
are highly recommended as demonstrated in the package
vignette.
Author: Balasubramanian Narasimhan [aut, cre],
Manuel Koller [ctb],
Dirk Eddelbuettel [ctb],
Steven G. Johnson [aut],
Thomas Hahn [aut],
Annie Bouvier [aut],
Kien Kieu [aut],
Simen Gaure [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.stanford.edu>
Diff between cubature versions 2.1.3 dated 2025-05-20 and 2.1.4 dated 2025-06-02
DESCRIPTION | 9 - MD5 | 10 - NEWS.md | 4 inst/doc/cubature.html | 372 ++++++++++++++++++++++++------------------------- inst/doc/version2.html | 8 - src/Makevars | 2 6 files changed, 206 insertions(+), 199 deletions(-)
Title: Cox MultiBlock Survival
Description: This software package provides Cox survival analysis for high-dimensional and multiblock datasets.
It encompasses a suite of functions dedicated from the classical Cox regression to newest analysis,
including Cox proportional hazards model, Stepwise Cox regression, and Elastic-Net Cox regression,
Sparse Partial Least Squares Cox regression (sPLS-COX) incorporating three distinct strategies,
and two Multiblock-PLS Cox regression (MB-sPLS-COX) methods. This tool is designed to adeptly handle
high-dimensional data, and provides tools for cross-validation, plot generation, and additional resources
for interpreting results. While references are available within the corresponding functions,
key literature is mentioned below.
Terry M Therneau (2024) <https://CRAN.R-project.org/package=survival>,
Noah Simon et al. (2011) <doi:10.18637/jss.v039.i05>,
Philippe Bastien et al. (2005) <doi:10.1016/j.csda.2004.02.005>,
Philippe Bastien (2008) <doi:10.1016/j.chemolab.2007.09.009& [...truncated...]
Author: Pedro Salguero Garcia [aut, cre, rev] ,
Sonia Tarazona Campos [ths],
Ana Conesa Cegarra [ths],
Kassu Mehari Beyene [ctb],
Luis Meira Machado [ctb],
Marta Sestelo [ctb],
Artur Araujo [ctb]
Maintainer: Pedro Salguero Garcia <pedrosalguerog@gmail.com>
Diff between Coxmos versions 1.1.2 dated 2025-03-05 and 1.1.3 dated 2025-06-02
Coxmos-1.1.2/Coxmos/man/plot_PLS_Coxmos.Rd |only Coxmos-1.1.3/Coxmos/DESCRIPTION | 16 Coxmos-1.1.3/Coxmos/MD5 | 113 Coxmos-1.1.3/Coxmos/NAMESPACE | 9 Coxmos-1.1.3/Coxmos/R/Coxmos_common_functions.R | 115 Coxmos-1.1.3/Coxmos/R/Coxmos_coxEN.R | 4 Coxmos-1.1.3/Coxmos/R/Coxmos_coxSW.R | 18 Coxmos-1.1.3/Coxmos/R/Coxmos_coxmos.R |only Coxmos-1.1.3/Coxmos/R/Coxmos_isb_splsdacox_dynamic.R | 1206 ++++---- Coxmos-1.1.3/Coxmos/R/Coxmos_isb_splsdrcox_dynamic.R | 1284 ++++---- Coxmos-1.1.3/Coxmos/R/Coxmos_mb_coxmos.R |only Coxmos-1.1.3/Coxmos/R/Coxmos_mb_splsdacox_dynamic.R | 14 Coxmos-1.1.3/Coxmos/R/Coxmos_mb_splsdrcox_dynamic.R | 16 Coxmos-1.1.3/Coxmos/R/Coxmos_plot_functions.R | 246 - Coxmos-1.1.3/Coxmos/R/Coxmos_sb_splsdacox_dynamic.R | 60 Coxmos-1.1.3/Coxmos/R/Coxmos_sb_splsdrcox.R | 1622 +++++------ Coxmos-1.1.3/Coxmos/R/Coxmos_sb_splsdrcox_dynamic.R | 63 Coxmos-1.1.3/Coxmos/R/Coxmos_sb_splsicox.R | 1688 +++++------ Coxmos-1.1.3/Coxmos/R/Coxmos_splsdacox_dynamic.R | 14 Coxmos-1.1.3/Coxmos/R/Coxmos_splsdrcox.R | 4 Coxmos-1.1.3/Coxmos/R/Coxmos_splsdrcox_dynamic.R | 62 Coxmos-1.1.3/Coxmos/R/Coxmos_splsdrcox_median.R | 2778 +++++++++---------- Coxmos-1.1.3/Coxmos/R/Coxmos_splsicox.R | 6 Coxmos-1.1.3/Coxmos/build/partial.rdb |binary Coxmos-1.1.3/Coxmos/build/vignette.rds |binary Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-MO-pipeline.R | 598 +--- Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-MO-pipeline.Rmd | 1059 +++---- Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-MO-pipeline.html | 2359 +++++++++------- Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-pipeline.R | 542 +-- Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-pipeline.Rmd | 1023 +++--- Coxmos-1.1.3/Coxmos/inst/doc/Coxmos-pipeline.html | 2325 ++++++++------- Coxmos-1.1.3/Coxmos/man/coxSW.Rd | 5 Coxmos-1.1.3/Coxmos/man/coxmos.Rd |only Coxmos-1.1.3/Coxmos/man/cv.coxEN.Rd | 4 Coxmos-1.1.3/Coxmos/man/cv.coxmos.Rd |only Coxmos-1.1.3/Coxmos/man/cv.isb.splsdacox.Rd | 2 Coxmos-1.1.3/Coxmos/man/cv.isb.splsdrcox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.mb.coxmos.Rd |only Coxmos-1.1.3/Coxmos/man/cv.mb.splsdacox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.mb.splsdrcox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.sb.splsdacox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.sb.splsdrcox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.splsdacox.Rd | 6 Coxmos-1.1.3/Coxmos/man/cv.splsdrcox.Rd | 6 Coxmos-1.1.3/Coxmos/man/getTrainTest.Rd |only Coxmos-1.1.3/Coxmos/man/mb.coxmos.Rd |only Coxmos-1.1.3/Coxmos/man/mb.splsdacox.Rd | 8 Coxmos-1.1.3/Coxmos/man/mb.splsdrcox.Rd | 10 Coxmos-1.1.3/Coxmos/man/plot_Coxmos.MB.PLS.model.Rd | 5 Coxmos-1.1.3/Coxmos/man/plot_Coxmos.PLS.model.Rd | 5 Coxmos-1.1.3/Coxmos/man/plot_events.Rd | 2 Coxmos-1.1.3/Coxmos/man/plot_sPLS_Coxmos.Rd |only Coxmos-1.1.3/Coxmos/man/sb.splsdacox.Rd | 8 Coxmos-1.1.3/Coxmos/man/sb.splsdrcox.Rd | 8 Coxmos-1.1.3/Coxmos/man/sb.splsdrcox_penalty.Rd | 2 Coxmos-1.1.3/Coxmos/man/sb.splsicox.Rd | 2 Coxmos-1.1.3/Coxmos/man/splsdacox.Rd | 8 Coxmos-1.1.3/Coxmos/man/splsdrcox.Rd | 8 Coxmos-1.1.3/Coxmos/man/splsdrcox_penalty.Rd | 2 Coxmos-1.1.3/Coxmos/man/splsicox.Rd | 6 Coxmos-1.1.3/Coxmos/vignettes/Coxmos-MO-pipeline.Rmd | 1059 +++---- Coxmos-1.1.3/Coxmos/vignettes/Coxmos-pipeline.Rmd | 1023 +++--- 62 files changed, 9970 insertions(+), 9483 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.42 dated 2025-04-19 and 2.0 dated 2025-06-02
DESCRIPTION | 8 +-- MD5 | 22 +++++---- NAMESPACE | 1 R/ABWilcox.R | 38 +++++++++++++--- R/ABanova.R | 34 ++++++++++++-- R/ABbinomial.R | 3 - R/ABdescrip.R | 129 +++++++++++++++++++++++++++++++++++++++++++++----------- R/ABlineD.R | 17 ++++++- R/ABttest.R | 26 +++++++++-- R/Effectsize.R | 2 R/GABttest.R | 27 ++++++++++- R/RSlinesD.R |only man/RSlinesD.Rd |only 13 files changed, 247 insertions(+), 60 deletions(-)
Title: Estimation of the log Likelihood of the Saturated Model
Description: When the values of the outcome variable Y are either 0 or 1,
the function lsm() calculates the estimation of the log likelihood
in the saturated model.
This model is characterized by Llinas (2006, ISSN:2389-8976) in section 2.3
through the assumptions 1 and 2.
The function LogLik() works (almost perfectly) when the number of independent
variables K is high, but for small K it calculates wrong values in some cases.
For this reason, when Y is dichotomous and the data are grouped in J populations,
it is recommended to use the function lsm() because it works very well for all K.
Author: Jorge Villalba [aut, cre] ,
Humberto Llinas [aut] ,
Omar Fabregas [aut]
Maintainer: Jorge Villalba <jvillalba@utb.edu.co>
Diff between lsm versions 0.2.1.4 dated 2024-06-08 and 0.2.1.5 dated 2025-06-02
DESCRIPTION | 17 +++++++++-------- MD5 | 4 ++-- inst/CITATION | 2 ++ 3 files changed, 13 insertions(+), 10 deletions(-)
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors, both dynamic and static. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006> and
Cadonna et al. (2020) <doi:10.3390/econometrics8020020> and Knaus and Frühwirth-Schnatter (2023) <doi:10.48550/arXiv.2312.10487>. For details on the package, please see Knaus et al. (2021) <doi:10.18637/jss.v100.i13>. For the multivariate extension, see the 'shrinkTVPVAR' package.
Author: Peter Knaus [aut, cre] ,
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] ,
Sylvia Fruehwirth-Schnatter [aut] ,
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 3.0.1 dated 2024-02-18 and 3.1.0 dated 2025-06-02
DESCRIPTION | 18 ++--- MD5 | 40 ++++++------ NEWS.md | 10 +++ R/plot_functions.R | 9 ++ R/pred_funs.R | 16 +++- R/shrinkDTVP.R | 2 R/shrinkTVP.R | 9 +- R/simTVP.R | 2 build/vignette.rds |binary inst/doc/shrinkTVP.ltx | 6 - inst/doc/shrinkTVP.pdf |binary inst/include/shrinkTVP.h | 150 ++++++++++++++++++++++++++++++++++++++++++++++ man/plot.mcmc.tvp.Rd | 4 - man/shrinkDTVP.Rd | 2 man/shrinkTVP.Rd | 7 +- man/simTVP.Rd | 2 man/updateTVP.Rd | 2 src/exports.cpp | 28 ++++++++ src/rho_p_MH_step.cpp | 2 tests/testthat/Rplots.pdf |binary vignettes/shrinkTVP.ltx | 6 - 21 files changed, 258 insertions(+), 57 deletions(-)
Title: Run Any CLI Tool on a 'Conda' Environment
Description: Simplifies the execution of command line interface (CLI)
tools within isolated and reproducible environments. It enables users
to effortlessly manage 'Conda' environments, execute command line
tools, handle dependencies, and ensure reproducibility in their data
analysis workflows.
Author: Lucio Queiroz [aut, cre, cph] ,
Claudio Zanettini [aut, ctb]
Maintainer: Lucio Queiroz <luciorqueiroz@gmail.com>
Diff between condathis versions 0.1.1 dated 2025-01-23 and 0.1.2 dated 2025-06-02
DESCRIPTION | 12 +- MD5 | 70 +++++++------ NEWS.md | 126 ++++++++++++++++-------- R/check_micromamba_version.R |only R/clean_cache.R |only R/create_base_env.R | 8 + R/create_env.R | 29 ++++- R/env_exists.R | 4 R/get_best_micromamba_path.R |only R/get_condathis_path.R | 5 R/get_micromamba_version.R |only R/install_micromamba.R | 71 +++++++++---- R/is_micromamba_available.R | 6 - R/is_micromamba_version_available.R |only R/list_envs.R | 6 - R/micromamba_user_installed.R | 6 - R/native_cmd.R | 14 +- R/remove_env.R | 5 R/rethrow_error_cmd.R | 11 +- R/rethrow_error_run.R | 26 ++++ R/run.R | 23 +++- R/run_bin.R | 11 +- R/run_internal_native.R | 23 +++- R/symlink_micromamba_bin.R | 12 -- R/with_sandbox_dir.R | 12 ++ README.md | 5 man/create_env.Rd | 8 - man/env_exists.Rd | 11 +- man/install_micromamba.Rd | 30 +++-- man/list_envs.Rd | 6 - man/run.Rd | 6 - man/run_bin.Rd | 6 - tests/testthat/setup.R | 12 ++ tests/testthat/test-create_base_env.R | 10 + tests/testthat/test-create_env.R | 21 ++-- tests/testthat/test-install_micromamba.R | 49 ++++++--- tests/testthat/test-micromamba_user_installed.R | 2 tests/testthat/test-native_cmd.R | 6 - tests/testthat/test-rethrow_error.R |only 39 files changed, 450 insertions(+), 202 deletions(-)
Title: Define Aliases for R Expressions
Description: Create aliases for other R names or arbitrarily complex R expressions. Accessing the alias acts as-if the aliased expression were invoked instead, and continuously reflects the current value of that expression: updates to the original expression will be reflected in the alias; and updates to the alias will automatically be reflected in the original expression.
Author: Konrad Rudolph [cre, aut]
Maintainer: Konrad Rudolph <konrad.rudolph@gmail.com>
Diff between aka versions 0.1.0 dated 2024-07-22 and 0.2.0 dated 2025-06-02
DESCRIPTION | 12 +++++++----- LICENSE | 2 +- MD5 | 19 +++++++++++-------- NAMESPACE | 2 +- NEWS.md |only R/alias.r | 16 +++++++++------- R/data_table.r |only R/load.r |only README.md | 14 ++++++++++---- man/alias.Rd | 17 +++++++++-------- tests/testthat.r | 7 +------ tests/testthat/test-alias.r | 12 ++++++++++-- 12 files changed, 59 insertions(+), 42 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods. Methodological details are given in Hirk, Hornik, Vana (2020) <doi:10.18637/jss.v093.i04>.
Author: Rainer Hirk [aut],
Kurt Hornik [aut] ,
Laura Vana [aut, cre] ,
Alan Gentz [ctb]
Maintainer: Laura Vana <laura.vana@tuwien.ac.at>
Diff between mvord versions 1.2.5 dated 2024-08-30 and 1.2.6 dated 2025-06-02
mvord-1.2.5/mvord/vignettes/res_cor_logit_3raters.rda |only mvord-1.2.6/mvord/DESCRIPTION | 16 +- mvord-1.2.6/mvord/MD5 | 20 +-- mvord-1.2.6/mvord/NEWS | 3 mvord-1.2.6/mvord/build/partial.rdb |binary mvord-1.2.6/mvord/build/vignette.rds |binary mvord-1.2.6/mvord/inst/doc/vignette_mvord.pdf |binary mvord-1.2.6/mvord/inst/doc/vignette_mvord2.R | 101 +++++++++--------- mvord-1.2.6/mvord/inst/doc/vignette_mvord2.Rmd | 7 - mvord-1.2.6/mvord/inst/doc/vignette_mvord2.html | 16 +- mvord-1.2.6/mvord/inst/extdata |only mvord-1.2.6/mvord/vignettes/vignette_mvord2.Rmd | 7 - 12 files changed, 89 insertions(+), 81 deletions(-)
Title: Unsupervised Clustering of Multiple Censored Time-to-Event
Endpoints
Description: Provides basic tools and wrapper functions for computing clusters of instances described by multiple time-to-event censored endpoints. From long-format datasets, where one instance is described by one or more dated records, the main function, `make_state_matrices()`, creates state matrices. Based on these matrices, optimised procedures using the Jaccard distance between instances enable the construction of longitudinal typologies. The package is under active development, with additional tools for graphical representation of typologies planned. For methodological details, see our accompanying paper: `Delord M, Douiri A (2025) <doi:10.1186/s12874-025-02476-7>`.
Author: Marc Delord [aut, cre]
Maintainer: Marc Delord <mdelord@gmail.com>
Diff between MSCA versions 1.0 dated 2025-02-19 and 1.1.1 dated 2025-06-02
MSCA-1.0/MSCA/R/f2.R |only MSCA-1.0/MSCA/R/make_state_matrix.R |only MSCA-1.0/MSCA/data/EHR.RData |only MSCA-1.0/MSCA/man/MSCA-package.Rd |only MSCA-1.0/MSCA/man/make_state_matrix.Rd |only MSCA-1.0/MSCA/man/msca.Rd |only MSCA-1.0/MSCA/src/FAST_JACK.cpp |only MSCA-1.0/MSCA/src/init_rcpp.cpp |only MSCA-1.0/MSCA/src/rcpp_hello_world.cpp |only MSCA-1.1.1/MSCA/DESCRIPTION | 26 ++++++++++------- MSCA-1.1.1/MSCA/MD5 | 40 ++++++++++++++++++--------- MSCA-1.1.1/MSCA/NAMESPACE | 34 ++++++++++++++++------ MSCA-1.1.1/MSCA/NEWS.md |only MSCA-1.1.1/MSCA/R/RcppExports.R | 10 ++++-- MSCA-1.1.1/MSCA/R/fast_clara_jaccard.R |only MSCA-1.1.1/MSCA/R/fast_jack_upper.R |only MSCA-1.1.1/MSCA/R/get_cluster_sequences.R |only MSCA-1.1.1/MSCA/R/make_state_matrices.R |only MSCA-1.1.1/MSCA/R/seq_stats.R |only MSCA-1.1.1/MSCA/R/zzz.R |only MSCA-1.1.1/MSCA/build |only MSCA-1.1.1/MSCA/data/EHR.rda |only MSCA-1.1.1/MSCA/inst |only MSCA-1.1.1/MSCA/man/fast_clara_jaccard.Rd |only MSCA-1.1.1/MSCA/man/fast_jaccard_dist.Rd |only MSCA-1.1.1/MSCA/man/get_cluster_sequences.Rd |only MSCA-1.1.1/MSCA/man/make_state_matrices.Rd |only MSCA-1.1.1/MSCA/man/sequence_stats.Rd |only MSCA-1.1.1/MSCA/src/Makevars |only MSCA-1.1.1/MSCA/src/RcppExports.cpp | 29 ++++++++++++++++--- MSCA-1.1.1/MSCA/src/block_jack.cpp |only MSCA-1.1.1/MSCA/src/make_state_matrix.cpp |only MSCA-1.1.1/MSCA/src/upper_jack.cpp |only MSCA-1.1.1/MSCA/vignettes |only 34 files changed, 99 insertions(+), 40 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates to be annotated
to express unspecified date components,
approximate or uncertain date components,
date ranges, and sets of dates.
This is useful for describing and analysing temporal information,
whether historical or recent, where date precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.5.3 dated 2025-03-20 and 0.5.4 dated 2025-06-02
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/coerce_to_messydate.R | 6 ++++++ tests/testthat/test-coerce_to.R | 8 +++++--- 5 files changed, 30 insertions(+), 14 deletions(-)
Title: Triangulation of Irregularly Spaced Data
Description: A constrained two-dimensional Delaunay triangulation package
providing both triangulation and generation of voronoi mosaics of
irregular spaced data.
Please note that most of the functions are now also covered in package
interp, which is a re-implementation from scratch under a free license
based on a different triangulation algorithm.
Author: Albrecht Gebhardt [aut, cre, cph] ,
R. J. Renka [aut] ,
Stephen Eglen [aut, cph] ,
Sergej Zuyev [aut, cph] ,
Denis White [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between tripack versions 1.3-9.2 dated 2024-10-21 and 1.3-9.3 dated 2025-06-02
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Quantitative Trait Locus Mapping in Experimental Crosses
Description: Provides a set of tools to perform quantitative
trait locus (QTL) analysis in experimental crosses. It is a
reimplementation of the 'R/qtl' package to better handle
high-dimensional data and complex cross designs.
Broman et al. (2019) <doi:10.1534/genetics.118.301595>.
Author: Karl W Broman [aut, cre] ,
R Core Team [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2 versions 0.36 dated 2024-05-13 and 0.38 dated 2025-06-02
DESCRIPTION | 13 +++-- MD5 | 46 ++++++++++---------- NAMESPACE | 1 NEWS.md | 19 +++++++- R/CCcolors-data.R | 2 R/clean_genoprob.R | 2 R/compare_geno.R | 51 ++++++++++++++++++++++ R/qtl2-package.R | 2 R/read_cross2.R | 6 ++ R/scan1_pg.R | 66 ++++++++++++++++++++--------- README.md | 4 - build/partial.rdb |binary data/CCaltcolors.RData |binary data/CCcolors.RData |binary data/CCorigcolors.RData |binary man/CCcolors.Rd | 2 man/clean_genoprob.Rd | 2 man/compare_founder_geno.Rd |only man/qtl2-package.Rd | 2 src/cross_riself16.cpp | 5 +- src/cross_riself4.cpp | 5 +- src/cross_riself8.cpp | 5 +- src/cross_risib4.cpp | 5 +- src/cross_risib8.cpp | 5 +- tests/testthat/test-compare_founder_geno.R |only 25 files changed, 182 insertions(+), 61 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp [aut, cre]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.13 dated 2024-06-20 and 0.13.1 dated 2025-06-02
DESCRIPTION | 9 +- MD5 | 25 +++--- NAMESPACE | 2 NEWS | 7 + R/03_modelformation_samplestats_norawts.R | 27 ++++-- R/21_Ising_identify.R | 2 R/a_models_dlvm1.R | 2 R/a_models_ri_clpm.R |only R/e_modelmodifications_partialprune.R | 105 ++++++++++++++++++++++++-- R/e_modelmodifications_ri_clpm_stationarity.R |only build/partial.rdb |binary man/CIplot.Rd | 3 man/partialprune.Rd | 50 +++++++++++- man/psychonetrics-class.Rd | 3 man/ri_clpm.Rd |only 15 files changed, 198 insertions(+), 37 deletions(-)
Title: Sourcing Archaeological Materials by Chemical Composition
Description: Exploration and analysis of compositional data in the
framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This package
provides tools for chemical fingerprinting and source tracking of
ancient materials.
Author: Nicolas Frerebeau [aut, cre] ,
Anne Philippe [aut] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between nexus versions 0.5.0 dated 2025-04-07 and 0.6.0 dated 2025-06-02
nexus-0.5.0/nexus/inst/fr |only nexus-0.5.0/nexus/man/group_metadata.Rd |only nexus-0.5.0/nexus/man/mutators.Rd |only nexus-0.6.0/nexus/DESCRIPTION | 48 nexus-0.6.0/nexus/MD5 | 181 +- nexus-0.6.0/nexus/NAMESPACE | 13 nexus-0.6.0/nexus/NEWS.md | 22 nexus-0.6.0/nexus/R/AllClasses.R | 5 nexus-0.6.0/nexus/R/AllGenerics.R | 222 +- nexus-0.6.0/nexus/R/aggregate.R | 2 nexus-0.6.0/nexus/R/barplot.R | 19 nexus-0.6.0/nexus/R/bind.R | 7 nexus-0.6.0/nexus/R/boxplot.R |only nexus-0.6.0/nexus/R/coerce.R | 62 nexus-0.6.0/nexus/R/condense.R | 13 nexus-0.6.0/nexus/R/describe.R | 98 - nexus-0.6.0/nexus/R/group.R | 114 - nexus-0.6.0/nexus/R/mix.R | 2 nexus-0.6.0/nexus/R/mutators.R | 10 nexus-0.6.0/nexus/R/nexus-package.R | 34 nexus-0.6.0/nexus/R/pairs.R | 7 nexus-0.6.0/nexus/R/plot.R | 71 nexus-0.6.0/nexus/R/reexport.R | 8 nexus-0.6.0/nexus/R/scale.R | 2 nexus-0.6.0/nexus/R/simplex.R | 18 nexus-0.6.0/nexus/R/subset.R | 5 nexus-0.6.0/nexus/R/transform_alr.R | 6 nexus-0.6.0/nexus/R/transform_clr.R | 6 nexus-0.6.0/nexus/R/transform_ilr.R | 9 nexus-0.6.0/nexus/R/transform_inverse.R | 9 nexus-0.6.0/nexus/R/transform_lr.R | 3 nexus-0.6.0/nexus/R/transform_plr.R | 3 nexus-0.6.0/nexus/README.md | 29 nexus-0.6.0/nexus/build/vignette.rds |binary nexus-0.6.0/nexus/inst/doc/groups.R | 63 nexus-0.6.0/nexus/inst/doc/groups.Rmd | 90 - nexus-0.6.0/nexus/inst/doc/groups.html | 171 + nexus-0.6.0/nexus/inst/doc/nexus.R | 55 nexus-0.6.0/nexus/inst/doc/nexus.Rmd | 105 + nexus-0.6.0/nexus/inst/doc/nexus.html | 104 + nexus-0.6.0/nexus/inst/examples/ex-boxplot.R |only nexus-0.6.0/nexus/inst/examples/ex-describe.R | 6 nexus-0.6.0/nexus/inst/examples/ex-group.R | 2 nexus-0.6.0/nexus/inst/examples/ex-mix.R | 2 nexus-0.6.0/nexus/inst/examples/ex-pca.R | 2 nexus-0.6.0/nexus/inst/examples/ex-plot.R | 7 nexus-0.6.0/nexus/inst/po/fr/LC_MESSAGES/R-nexus.mo |binary nexus-0.6.0/nexus/inst/tinytest/_snaps/coerce_group.rds |binary nexus-0.6.0/nexus/inst/tinytest/_snaps/condense.rds |binary nexus-0.6.0/nexus/inst/tinytest/_snaps/scale.rds |binary nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/boxplot_ratio.svg |only nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/boxplot_ratio_group.svg |only nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/describe_coda.txt |only nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/describe_groups.txt |only nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_barplot.svg | 364 ++-- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_barplot_group.svg | 374 ++-- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_barplot_order_columns.svg | 364 ++-- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_barplot_order_rows.svg | 364 ++-- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_hist.svg | 53 nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_hist_count.svg | 58 nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_outliers_dotchart.svg | 40 nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_pairs.svg | 590 +++--- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_pairs_group.svg | 898 +++++----- nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_ratio.svg | 28 nexus-0.6.0/nexus/inst/tinytest/_tinysnapshot/plot_ratio_group.svg | 54 nexus-0.6.0/nexus/inst/tinytest/helpers.R |only nexus-0.6.0/nexus/inst/tinytest/test_describe.R | 11 nexus-0.6.0/nexus/inst/tinytest/test_group.R | 2 nexus-0.6.0/nexus/inst/tinytest/test_outliers.R | 6 nexus-0.6.0/nexus/inst/tinytest/test_plot.R | 21 nexus-0.6.0/nexus/inst/tinytest/test_simplex.R | 11 nexus-0.6.0/nexus/man/ReferenceGroups-class.Rd | 3 nexus-0.6.0/nexus/man/as.data.frame.Rd | 41 nexus-0.6.0/nexus/man/as_graph.Rd | 1 nexus-0.6.0/nexus/man/barplot.Rd | 8 nexus-0.6.0/nexus/man/boxplot.Rd |only nexus-0.6.0/nexus/man/describe.Rd | 6 nexus-0.6.0/nexus/man/figures/README-barplot-1.png |binary nexus-0.6.0/nexus/man/figures/README-lra-1.png |binary nexus-0.6.0/nexus/man/figures/README-lra-2.png |binary nexus-0.6.0/nexus/man/group.Rd | 9 nexus-0.6.0/nexus/man/group_names.Rd |only nexus-0.6.0/nexus/man/group_split.Rd | 5 nexus-0.6.0/nexus/man/group_subset.Rd | 7 nexus-0.6.0/nexus/man/hist.Rd | 1 nexus-0.6.0/nexus/man/is_assigned.Rd |only nexus-0.6.0/nexus/man/labels.Rd |only nexus-0.6.0/nexus/man/mix.Rd | 2 nexus-0.6.0/nexus/man/nexus-package.Rd | 40 nexus-0.6.0/nexus/man/pairs.Rd | 18 nexus-0.6.0/nexus/man/pca.Rd | 2 nexus-0.6.0/nexus/man/plot.Rd | 50 nexus-0.6.0/nexus/man/reexports.Rd | 4 nexus-0.6.0/nexus/man/totals.Rd | 11 nexus-0.6.0/nexus/man/weights.Rd |only nexus-0.6.0/nexus/po/R-fr.po | 112 - nexus-0.6.0/nexus/po/R-nexus.pot | 64 nexus-0.6.0/nexus/vignettes/groups.Rmd | 90 - nexus-0.6.0/nexus/vignettes/nexus.Rmd | 105 + 99 files changed, 3083 insertions(+), 2369 deletions(-)
Title: Convert GBM Object Trees to SAS Code
Description: Writes SAS code to get predicted values from every tree of a gbm.object.
Author: John R. Dixon [aut, cre]
Maintainer: John R. Dixon <gbm2sas@gmail.com>
Diff between gbm2sas versions 3.0 dated 2024-01-23 and 4.0 dated 2025-06-02
DESCRIPTION | 14 +++++++++----- MD5 | 2 +- 2 files changed, 10 insertions(+), 6 deletions(-)
Title: Generate and Simulate Deterministic Discrete-Time Compartmental
Models
Description: R package to build and simulate deterministic discrete-time compartmental models that can be non-Markov. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).
Author: Thinh Ong [aut, cph] ,
Anh Phan [aut, cre] ,
Marc Choisy [aut] ,
Niels Lohman [ctb],
Bjoern Hoehrmann [ctb],
Florian Loitsch [ctb],
Ingo Berg [ctb]
Maintainer: Anh Phan <anhptq@oucru.org>
Diff between denim versions 1.2.0 dated 2025-05-30 and 1.2.1 dated 2025-06-02
DESCRIPTION | 10 ++--- MD5 | 25 ++++++------- NAMESPACE | 1 NEWS.md | 4 ++ R/simulators.R | 20 +++++++--- inst/doc/denim.html | 34 ++++++++--------- inst/doc/denim_dsl.R | 2 - inst/doc/denim_dsl.Rmd | 4 +- inst/doc/denim_dsl.html | 84 +++++++++++++++++++------------------------- inst/doc/nonparametric.html | 6 +-- man/plot.denim.Rd |only src/Compartment.cpp | 56 +++++++++++++++-------------- src/Compartment.h | 14 +++---- vignettes/denim_dsl.Rmd | 4 +- 14 files changed, 134 insertions(+), 130 deletions(-)
Title: Interpolation of Irregularly and Regularly Spaced Data
Description: Several cubic spline interpolation methods of H. Akima for irregular and
regular gridded data are available through this package, both for the bivariate case
(irregular data: ACM 761, regular data: ACM 760) and univariate case (ACM 433 and ACM 697).
Linear interpolation of irregular gridded data is also covered by reusing D. J. Renkas
triangulation code which is part of Akimas Fortran code. A bilinear interpolator
for regular grids was also added for comparison with the bicubic interpolator on
regular grids.
Please note that most of the functions are now also covered in package
interp, which is a re-implementation from scratch under a free license.
Author: Hiroshi Akima [aut, cph] ),
Albrecht Gebhardt [aut, cre, cph] , bilinear code),
Thomas Petzold [ctb, cph] ,
Martin Maechler [ctb, cph] ,
YYYY Association for Computing Machinery, Inc. [cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between akima versions 0.6-3.4 dated 2022-04-28 and 0.6-3.6 dated 2025-06-02
DESCRIPTION | 12 +++++++----- MD5 | 8 ++++---- R/bicubic.R | 2 +- R/bilinear.R | 2 +- man/interpp.Rd | 2 +- 5 files changed, 14 insertions(+), 12 deletions(-)
Title: Sample Selection Models
Description: In order to facilitate the adjustment of the sample selection models
existing in the literature, we created the 'ssmodels' package. Our package
allows the adjustment of the classic Heckman model (Heckman (1976),
Heckman (1979) <doi:10.2307/1912352>), and the estimation of the parameters of
this model via the maximum likelihood method and two-step method, in addition
to the adjustment of the Heckman-t models introduced in the literature by
Marchenko and Genton (2012) <doi:10.1080/01621459.2012.656011> and the
Heckman-Skew model introduced in the literature by Ogundimu and Hutton (2016)
<doi:10.1111/sjos.12171>. We also implemented functions to adjust the
generalized version of the Heckman model, introduced by Bastos, Barreto-Souza,
and Genton (2021) <doi:10.5705/ss.202021.0068>, that allows the inclusion of
covariables to the dispersion and correlation parameters, and a function to
adjust the Heckman-BS model introduced by Bastos and Barreto-Souza (2020)
<doi: [...truncated...]
Author: Fernando de Souza Bastos [aut, cre],
Wagner Barreto de Souza [aut]
Maintainer: Fernando de Souza Bastos <fernando.bastos@ufv.br>
Diff between ssmodels versions 2.0.0 dated 2025-06-01 and 2.0.1 dated 2025-06-02
DESCRIPTION | 7 +- MD5 | 18 +++--- NEWS.md | 6 ++ R/HeckmanBS.R | 2 R/HeckmanCL.R | 2 R/HeckmanGe.R | 2 R/HeckmanSK.R | 18 ++++++ R/HeckmantS.R | 2 build/partial.rdb |binary inst/doc/vignette.html | 128 ++++++++++++++++++++++++------------------------- 10 files changed, 103 insertions(+), 82 deletions(-)
Title: Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling
Framework
Description: Can be used to model the fate of soil organic carbon and soil organic nitrogen and to calculate N mineralisation rates. Provides a framework that numerically solves differential equations of soil organic carbon models based on first-order kinetics and extends these models to include the nitrogen component. The name 'sorcering' is an acronym for 'Soil ORganic Carbon & CN Ratio drIven Nitrogen modellinG framework'.
Author: Marc Scherstjanoi [aut, cre],
Rene Dechow [aut]
Maintainer: Marc Scherstjanoi <marc.scherstjanoi@thuenen.de>
Diff between sorcering versions 1.1.0 dated 2024-10-09 and 1.2.0 dated 2025-06-02
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 62 +++++ R/RcppExports.R | 4 build/partial.rdb |binary build/sorcering.pdf |binary build/stage23.rdb |binary inst/doc/sorcering.pdf |binary man/sorcering.Rd | 17 - src/RcppExports.cpp | 9 src/sorcering.cpp | 414 ++++++++++++++++++++++++--------------- vignettes/sorcering_vignette.pdf |binary 12 files changed, 357 insertions(+), 179 deletions(-)
Title: The Q-Matrix Validation Methods Framework
Description: Provide a variety of Q-matrix validation methods for the generalized
cognitive diagnosis models, including the method based on the generalized
deterministic input, noisy, and gate model (G-DINA) by de la Torre (2011)
<DOI:10.1007/s11336-011-9207-7> discrimination index (the GDI method) by
de la Torre and Chiu (2016) <DOI:10.1007/s11336-015-9467-8>, the Hull method
by Najera et al. (2021) <DOI:10.1111/bmsp.12228>, the stepwise Wald test method
(the Wald method) by Ma and de la Torre (2020) <DOI:10.1111/bmsp.12156>, the
multiple logistic regression‑based Q‑matrix validation method (the MLR-B method)
by Tu et al. (2022) <DOI:10.3758/s13428-022-01880-x>, the beta method based on
signal detection theory by Li and Chen (2024) <DOI:10.1111/bmsp.12371> and
Q-matrix validation based on relative fit index by Chen et al. (2013)
<DOI:10.1111/j.1745-3984.2012.00185.x>. Different research methods and iterative
procedures during Q-matrix validating are availa [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between Qval versions 1.2.2 dated 2025-05-02 and 1.2.3 dated 2025-06-02
DESCRIPTION | 8 +- MD5 | 71 +++++++++---------- NAMESPACE | 5 + NEWS.md | 12 +++ R/CDM.R | 16 ++-- R/IndexBeta.R | 15 +--- R/IndexPVAF.R | 2 R/IndexPriority.R | 2 R/IndexR2.R | 2 R/MLR.R | 2 R/MLRlasso.R | 5 - R/QvalIndex.R | 8 +- R/QvalMLRB.R | 8 +- R/QvalValidation.R | 24 +++++- R/S3Extract.R | 197 +++++++++++++++++++++++++++++++++++------------------ R/S3Plot.R | 2 R/S3Print.R | 60 ++++++++++++++-- R/S3Summary.R | 37 +++++++++ R/S3Update.R | 40 +++++++++- R/fit.R | 15 +++- R/sim.MQ.R | 2 inst |only man/CDM.Rd | 2 man/extract.Rd | 127 ++++++++++++++++++++++------------ man/fit.Rd | 3 man/get.beta.Rd | 9 +- man/plot.Rd | 2 man/print.Rd | 33 +++++++- man/sim.MQ.Rd | 2 man/summary.Rd | 19 ++++- man/update.Rd | 22 +++++ man/validation.Rd | 4 - man/zOSR.Rd | 2 man/zQRR.Rd | 2 man/zTPR.Rd | 2 man/zUSR.Rd | 2 tests/building.R | 6 + 37 files changed, 550 insertions(+), 220 deletions(-)
Title: Remove Vocals from a Song
Description: Attempts to remove vocals from a stereo '.wav' recording of a song.
Author: John R. Dixon [aut, cre]
Maintainer: John R. Dixon <gbm2sas@gmail.com>
Diff between karaoke versions 2.0 dated 2024-01-23 and 3.0 dated 2025-06-02
DESCRIPTION | 14 +++++++++----- MD5 | 2 +- 2 files changed, 10 insertions(+), 6 deletions(-)
Title: Fit Normal, Student-t or Contaminated Normal Heckman Selection
Models
Description: It performs maximum likelihood estimation for the Heckman selection model (Normal, Student-t or Contaminated normal) using an EM-algorithm <doi:10.1016/j.jmva.2021.104737>. It also performs influence diagnostic through global and local influence for four possible perturbation schema.
Author: Marcos Prates [aut, cre, trl] ,
Victor Lachos [aut] ,
Dipak Dey [aut],
Marcos Oliveira [aut, ctb],
Christian Galarza [ctb],
Katherine Loor [ctb],
Alejandro Ordonez [ctb]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>
Diff between HeckmanEM versions 0.2-1 dated 2024-04-07 and 0.2-2 dated 2025-06-02
CHANGELOG | 5 +++++ DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- R/utilitaries.R | 12 ++++++++---- 4 files changed, 23 insertions(+), 13 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between lidR versions 4.2.0 dated 2025-05-28 and 4.2.1 dated 2025-06-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 +++++- README.md | 2 +- src/knn.cpp | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model, multiple-response Gaussian, and the grouped multinomial regression; see <doi:10.18637/jss.v033.i01> and <doi:10.18637/jss.v039.i05>. There are two new and important additions. The family argument can be a GLM family object, which opens the door to any programmed family (<doi:10.18637/jss.v106.i01>). This comes with a modest computational cost, so when the built-in families suffice, they should be used instead. The other novelty is the relax option, which refits each of the active sets in the path unpenalized. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the papers cited.
Author: Jerome Friedman [aut],
Trevor Hastie [aut, cre],
Rob Tibshirani [aut],
Balasubramanian Narasimhan [aut],
Kenneth Tay [aut],
Noah Simon [aut],
Junyang Qian [ctb],
James Yang [aut]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 4.1-8 dated 2023-08-21 and 4.1-9 dated 2025-06-02
DESCRIPTION | 10 ++--- MD5 | 70 +++++++++++++++++------------------ NEWS.md | 5 ++ R/buildPredmat.coxnetlist.R | 14 ++++--- R/coxnet.R | 4 +- R/cv.coxnet.R | 4 +- R/cv.glmnet.R | 4 +- R/glmnet-package.R | 3 - R/glmnet.R | 39 ++++++-------------- R/lognet.R | 8 +--- R/plot.glmnet.R | 8 ++-- R/plot.mrelnet.R | 2 - R/plot.multnet.R | 2 - R/plotCoef.R | 3 + R/predict.glmnet.R | 2 - R/predict.multnet.R | 2 - README.md | 53 ++++++++++++--------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 9 ++-- inst/doc/Coxnet.R | 2 + inst/doc/Coxnet.pdf |binary inst/doc/glmnet.R | 76 +++++++++++++++++++-------------------- inst/doc/glmnet.Rmd | 6 +-- inst/doc/glmnet.pdf |binary inst/doc/glmnetFamily.R | 8 ++-- inst/doc/glmnetFamily.pdf |binary inst/doc/relax.pdf |binary man/cv.glmnet.Rd | 4 +- man/glmnet-package.Rd | 7 +++ man/plot.glmnet.Rd | 12 +++--- src/glmnet_init.cpp | 8 ++++ src/glmnetpp/src/legacy/pb.c | 5 +- src/pb.c | 5 +- vignettes/assets/glmnet_refs.bib | 1 vignettes/glmnet.Rmd | 6 +-- 36 files changed, 195 insertions(+), 187 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.2.2 dated 2025-04-29 and 1.3.0 dated 2025-06-02
DESCRIPTION | 12 +- MD5 | 36 +++--- NEWS.md | 19 +++ src/Makevars | 2 src/Makevars.win | 2 src/duckdb.tar.xz |binary src/include/sources.mk | 2 src/include/typesr.hpp | 9 + src/relational.cpp | 19 ++- src/scan.cpp | 82 ++++++++++++++ src/transform.cpp | 5 src/types.cpp | 46 +++++++- src/utils.cpp | 3 tests/testthat/_snaps/array.md | 10 + tests/testthat/test-array.R | 203 +++++++++++++++++++++++++++++++++---- tests/testthat/test-arrow_stream.R | 18 +-- tests/testthat/test-map.R | 2 tests/testthat/test-signal.R | 2 tests/testthat/test-struct.R | 4 19 files changed, 398 insertions(+), 78 deletions(-)
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by
using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
Author: Matthijs S. Berends [aut, cre] ,
Dennis Souverein [aut, ctb] ,
Erwin E. A. Hassing [aut, ctb],
Aislinn Cook [ctb] ,
Andrew P. Norgan [ctb] ,
Anita Williams [ctb] ,
Annick Lenglet [ctb] ,
Anthony Underwood [ctb] ,
Anton Mymrikov [ctb],
Bart C. Meijer [...truncated...]
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between AMR versions 2.1.1 dated 2023-10-21 and 3.0.0 dated 2025-06-02
AMR-2.1.1/AMR/R/ab_selectors.R |only AMR-2.1.1/AMR/R/plot.R |only AMR-2.1.1/AMR/inst/tinytest |only AMR-2.1.1/AMR/man/antibiotic_class_selectors.Rd |only AMR-2.1.1/AMR/man/antibiotics.Rd |only AMR-2.1.1/AMR/man/figures |only AMR-2.1.1/AMR/tests/tinytest.R |only AMR-3.0.0/AMR/DESCRIPTION | 120 + AMR-3.0.0/AMR/MD5 | 327 ++-- AMR-3.0.0/AMR/NAMESPACE | 168 +- AMR-3.0.0/AMR/NEWS.md | 328 +--- AMR-3.0.0/AMR/R/aa_amr-package.R | 20 AMR-3.0.0/AMR/R/aa_globals.R | 100 + AMR-3.0.0/AMR/R/aa_helper_functions.R | 384 +++-- AMR-3.0.0/AMR/R/aa_helper_pm_functions.R | 10 AMR-3.0.0/AMR/R/aa_options.R | 31 AMR-3.0.0/AMR/R/ab.R | 482 +++--- AMR-3.0.0/AMR/R/ab_from_text.R | 32 AMR-3.0.0/AMR/R/ab_property.R | 47 AMR-3.0.0/AMR/R/age.R | 24 AMR-3.0.0/AMR/R/amr_selectors.R |only AMR-3.0.0/AMR/R/antibiogram.R | 1080 +++++++++++++-- AMR-3.0.0/AMR/R/atc_online.R | 44 AMR-3.0.0/AMR/R/av.R | 26 AMR-3.0.0/AMR/R/av_from_text.R | 22 AMR-3.0.0/AMR/R/av_property.R | 30 AMR-3.0.0/AMR/R/availability.R | 12 AMR-3.0.0/AMR/R/bug_drug_combinations.R | 71 - AMR-3.0.0/AMR/R/count.R | 40 AMR-3.0.0/AMR/R/custom_antimicrobials.R | 42 AMR-3.0.0/AMR/R/custom_eucast_rules.R | 135 + AMR-3.0.0/AMR/R/custom_mdro_guideline.R |only AMR-3.0.0/AMR/R/custom_microorganisms.R | 61 AMR-3.0.0/AMR/R/data.R | 227 +-- AMR-3.0.0/AMR/R/disk.R | 33 AMR-3.0.0/AMR/R/eucast_rules.R | 434 +++--- AMR-3.0.0/AMR/R/export_biosample.R |only AMR-3.0.0/AMR/R/first_isolate.R | 123 - AMR-3.0.0/AMR/R/g.test.R | 10 AMR-3.0.0/AMR/R/get_episode.R | 20 AMR-3.0.0/AMR/R/ggplot_pca.R | 62 AMR-3.0.0/AMR/R/ggplot_sir.R | 266 --- AMR-3.0.0/AMR/R/guess_ab_col.R | 107 - AMR-3.0.0/AMR/R/italicise_taxonomy.R | 23 AMR-3.0.0/AMR/R/join_microorganisms.R | 16 AMR-3.0.0/AMR/R/key_antimicrobials.R | 47 AMR-3.0.0/AMR/R/kurtosis.R | 14 AMR-3.0.0/AMR/R/like.R | 16 AMR-3.0.0/AMR/R/mdro.R | 702 +++++----- AMR-3.0.0/AMR/R/mean_amr_distance.R | 26 AMR-3.0.0/AMR/R/mic.R | 502 ++++--- AMR-3.0.0/AMR/R/mo.R | 588 ++++---- AMR-3.0.0/AMR/R/mo_matching_score.R | 32 AMR-3.0.0/AMR/R/mo_property.R | 157 +- AMR-3.0.0/AMR/R/mo_source.R | 29 AMR-3.0.0/AMR/R/pca.R | 25 AMR-3.0.0/AMR/R/plotting.R |only AMR-3.0.0/AMR/R/proportion.R | 90 - AMR-3.0.0/AMR/R/random.R | 32 AMR-3.0.0/AMR/R/resistance_predict.R | 53 AMR-3.0.0/AMR/R/sir.R | 1670 +++++++++++++++++------- AMR-3.0.0/AMR/R/sir_calc.R | 51 AMR-3.0.0/AMR/R/sir_df.R | 8 AMR-3.0.0/AMR/R/skewness.R | 12 AMR-3.0.0/AMR/R/sysdata.rda |binary AMR-3.0.0/AMR/R/top_n_microorganisms.R |only AMR-3.0.0/AMR/R/translate.R | 44 AMR-3.0.0/AMR/R/vctrs.R | 174 ++ AMR-3.0.0/AMR/R/whocc.R | 12 AMR-3.0.0/AMR/R/zz_deprecated.R | 221 --- AMR-3.0.0/AMR/R/zzz.R | 187 -- AMR-3.0.0/AMR/README.md | 79 - AMR-3.0.0/AMR/build/partial.rdb |binary AMR-3.0.0/AMR/build/vignette.rds |binary AMR-3.0.0/AMR/data/antibiotics.rda |binary AMR-3.0.0/AMR/data/antimicrobials.rda |only AMR-3.0.0/AMR/data/clinical_breakpoints.rda |binary AMR-3.0.0/AMR/data/dosage.rda |binary AMR-3.0.0/AMR/data/example_isolates.rda |binary AMR-3.0.0/AMR/data/intrinsic_resistant.rda |binary AMR-3.0.0/AMR/data/microorganisms.codes.rda |binary AMR-3.0.0/AMR/data/microorganisms.groups.rda |binary AMR-3.0.0/AMR/data/microorganisms.rda |binary AMR-3.0.0/AMR/inst/doc/AMR_for_Python.R |only AMR-3.0.0/AMR/inst/doc/AMR_for_Python.Rmd |only AMR-3.0.0/AMR/inst/doc/AMR_for_Python.html |only AMR-3.0.0/AMR/inst/doc/welcome_to_AMR.Rmd | 56 AMR-3.0.0/AMR/inst/doc/welcome_to_AMR.html | 136 - AMR-3.0.0/AMR/man/AMR-deprecated.Rd | 55 AMR-3.0.0/AMR/man/AMR-options.Rd | 23 AMR-3.0.0/AMR/man/AMR.Rd | 52 AMR-3.0.0/AMR/man/WHOCC.Rd | 4 AMR-3.0.0/AMR/man/WHONET.Rd | 14 AMR-3.0.0/AMR/man/ab_from_text.Rd | 26 AMR-3.0.0/AMR/man/ab_property.Rd | 43 AMR-3.0.0/AMR/man/add_custom_antimicrobials.Rd | 22 AMR-3.0.0/AMR/man/add_custom_microorganisms.Rd | 6 AMR-3.0.0/AMR/man/age.Rd | 10 AMR-3.0.0/AMR/man/age_groups.Rd | 6 AMR-3.0.0/AMR/man/antibiogram.Rd | 346 +++- AMR-3.0.0/AMR/man/antimicrobial_selectors.Rd |only AMR-3.0.0/AMR/man/antimicrobials.Rd |only AMR-3.0.0/AMR/man/as.ab.Rd | 38 AMR-3.0.0/AMR/man/as.av.Rd | 22 AMR-3.0.0/AMR/man/as.disk.Rd | 8 AMR-3.0.0/AMR/man/as.mic.Rd | 44 AMR-3.0.0/AMR/man/as.mo.Rd | 136 + AMR-3.0.0/AMR/man/as.sir.Rd | 425 ++++-- AMR-3.0.0/AMR/man/atc_online.Rd | 26 AMR-3.0.0/AMR/man/av_from_text.Rd | 26 AMR-3.0.0/AMR/man/av_property.Rd | 24 AMR-3.0.0/AMR/man/availability.Rd | 4 AMR-3.0.0/AMR/man/bug_drug_combinations.Rd | 44 AMR-3.0.0/AMR/man/clinical_breakpoints.Rd | 48 AMR-3.0.0/AMR/man/count.Rd | 79 - AMR-3.0.0/AMR/man/custom_eucast_rules.Rd | 111 + AMR-3.0.0/AMR/man/custom_mdro_guideline.Rd |only AMR-3.0.0/AMR/man/dosage.Rd | 18 AMR-3.0.0/AMR/man/eucast_rules.Rd | 76 - AMR-3.0.0/AMR/man/example_isolates.Rd | 14 AMR-3.0.0/AMR/man/example_isolates_unclean.Rd | 12 AMR-3.0.0/AMR/man/export_ncbi_biosample.Rd |only AMR-3.0.0/AMR/man/first_isolate.Rd | 92 - AMR-3.0.0/AMR/man/g.test.Rd | 7 AMR-3.0.0/AMR/man/get_episode.Rd | 8 AMR-3.0.0/AMR/man/ggplot_pca.Rd | 79 - AMR-3.0.0/AMR/man/ggplot_sir.Rd | 148 -- AMR-3.0.0/AMR/man/guess_ab_col.Rd | 23 AMR-3.0.0/AMR/man/intrinsic_resistant.Rd | 29 AMR-3.0.0/AMR/man/italicise_taxonomy.Rd | 10 AMR-3.0.0/AMR/man/join.Rd | 8 AMR-3.0.0/AMR/man/key_antimicrobials.Rd | 64 AMR-3.0.0/AMR/man/kurtosis.Rd | 6 AMR-3.0.0/AMR/man/like.Rd | 6 AMR-3.0.0/AMR/man/mdro.Rd | 190 -- AMR-3.0.0/AMR/man/mean_amr_distance.Rd | 12 AMR-3.0.0/AMR/man/microorganisms.Rd | 83 - AMR-3.0.0/AMR/man/microorganisms.codes.Rd | 16 AMR-3.0.0/AMR/man/microorganisms.groups.Rd | 14 AMR-3.0.0/AMR/man/mo_matching_score.Rd | 32 AMR-3.0.0/AMR/man/mo_property.Rd | 414 ++--- AMR-3.0.0/AMR/man/mo_source.Rd | 16 AMR-3.0.0/AMR/man/pca.Rd | 28 AMR-3.0.0/AMR/man/plot.Rd | 395 ++++- AMR-3.0.0/AMR/man/proportion.Rd | 129 - 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2016-07-22 1.1.4
2016-04-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-25 0.9.8
2019-12-16 0.9.7
2019-05-17 0.9.6
2016-03-19 0.9.4
2013-10-14 0.9.1
2013-06-21 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-23 1.2-4
2023-10-24 1.2-3
2021-04-30 1.2-1
2020-03-13 1.0-7
2019-10-01 1.0-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-01 0.2.3
2017-11-13 0.2.2
2017-10-13 0.2.1
2017-09-16 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-23 1.0.5
2020-07-18 1.0.4
2020-05-04 1.0.3
2020-03-19 1.0.2
2019-12-15 1.0.1
2019-06-19 1.0
Title: Tests of Multispecies Coalescent Gene Tree Simulator Output
Description: Statistical tests for validating multispecies coalescent gene tree simulators, using pairwise distances and rooted triple counts. See Allman ES, Baños HD, Rhodes JA 2023. Testing multispecies coalescent simulators using summary statistics, IEEE/ACM Trans Comput Biol Bioinformat, 20(2):1613–1618. <doi:10.1109/TCBB.2022.3177956>.
Author: Elizabeth Allman [aut, cre, cph],
Hector Banos [aut, cph],
John Rhodes [aut, cph]
Maintainer: Elizabeth Allman <e.allman@alaska.edu>
Diff between MSCsimtester versions 1.0.0 dated 2021-12-14 and 1.1 dated 2025-06-02
MSCsimtester-1.0.0/MSCsimtester/inst/extdata |only MSCsimtester-1.1/MSCsimtester/DESCRIPTION | 12 ++-- MSCsimtester-1.1/MSCsimtester/MD5 | 19 +++---- MSCsimtester-1.1/MSCsimtester/NAMESPACE | 1 MSCsimtester-1.1/MSCsimtester/R/MSCsimtester.R | 26 ++++----- MSCsimtester-1.1/MSCsimtester/build/partial.rdb |binary MSCsimtester-1.1/MSCsimtester/inst/REFERENCES.bib | 53 +++++++++----------- MSCsimtester-1.1/MSCsimtester/man/ADtest.Rd | 2 MSCsimtester-1.1/MSCsimtester/man/MSCsimtester.Rd | 15 ++++- MSCsimtester-1.1/MSCsimtester/man/genetreeSample.Rd | 4 - MSCsimtester-1.1/MSCsimtester/man/pairwiseDist.Rd | 7 +- 11 files changed, 75 insertions(+), 64 deletions(-)
Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.8 dated 2025-04-29 and 1.2.9 dated 2025-06-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/CDF.R | 7 ++----- inst/include/pmt/impl_multcomp_pmt.hpp | 10 ++++------ src/pmt_interface.cpp | 17 +++++++++++++---- 6 files changed, 32 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-20 1.0.5
2024-07-28 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-08 2.0.2
2022-11-06 2.0.1
2022-02-21 1.0.4
2021-06-14 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-31 0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-12 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-08 0.6.6
2022-06-01 0.6.5
2022-01-04 0.6.4
2021-09-02 0.6.3
2021-05-17 0.6.2
2020-10-15 0.6.1
2020-07-09 0.6.0
2019-06-05 0.5.7
2018-09-11 0.5.6
2018-03-27 0.5.5
2018-01-03 0.5.4
2017-01-27 0.5.3
2016-09-16 0.5.2
2016-07-23 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-15 1.4.7.2
2024-02-06 1.4.7.1
2022-05-11 1.4.7
2014-12-26 1.4.6
2014-01-13 1.4.5
2012-03-23 1.4.4
2011-03-23 1.4.2
2010-04-06 1.4.1
2009-10-11 1.4
2009-06-17 1.3
2009-01-20 1.2
2008-11-10 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-15 1.0.11
2018-10-06 1.0.10
2018-07-31 1.0.9
2017-11-14 1.0.6
2017-06-25 0.1.6
2017-01-14 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-01 1.0.7
2025-04-15 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-31 0.1.5
2017-01-14 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-30 0.5.5
2023-09-07 0.5.4
2022-09-18 0.5.3
2022-01-11 0.5.2
2018-05-14 0.5.1
2018-02-28 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-16 0.0.3
Title: Estimates Economic Variables for Word-of-Mouth-Campaigns
Description: Methods for estimating profit, profit-maximizing price, demand and consumer surplus of Word-of-Mouth-campaigns on mean-field networks.
Author: Michael Scholz [cre, aut],
Thomas Woehner [aut],
Ralf Peters [ctb]
Maintainer: Michael Scholz <michael.scholz@th-deg.de>
Diff between WordOfMouth versions 1.1.0 dated 2021-10-04 and 1.2.0 dated 2025-06-02
DESCRIPTION | 11 MD5 | 13 - NAMESPACE | 1 NEWS.md | 30 +- R/Computation.r | 560 ++++++++++++++++++++++++--------------------- R/WordOfMouth-package.r | 51 ++-- man/WordOfMouth-package.Rd | 4 man/incentivizeWoM.Rd |only 8 files changed, 370 insertions(+), 300 deletions(-)
Title: Causal Modeling with Coincidence Analysis
Description: Provides comprehensive functionalities for causal modeling with Coincidence Analysis (CNA), which is a configurational comparative method of causal data analysis that was first introduced in Baumgartner (2009) <doi:10.1177/0049124109339369>, and generalized in Baumgartner & Ambuehl (2020) <doi:10.1017/psrm.2018.45>. CNA is designed to recover INUS-causation from data, which is particularly relevant for analyzing processes featuring conjunctural causation (component causation) and equifinality (alternative causation). CNA is currently the only method for INUS-discovery that allows for multiple effects (outcomes/endogenous factors), meaning it can analyze common-cause and causal chain structures. Moreover, as of version 4.0, it is the only method of its kind that provides measures for model evaluation and selection that are custom-made for the problem of INUS-discovery.
Author: Mathias Ambuehl [aut, cre, cph],
Michael Baumgartner [aut, cph],
Ruedi Epple [ctb],
Veli-Pekka Parkkinen [ctb],
Alrik Thiem [ctb]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Diff between cna versions 4.0.0 dated 2025-04-04 and 4.0.3 dated 2025-06-02
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/condTbl.r | 53 ++++++++++++++++++++++++++++++++++------------------- R/configTable.R | 11 +++++++---- inst/NEWS | 6 ++++-- inst/doc/cna.pdf |binary man/cna-package.Rd | 4 ++-- 7 files changed, 57 insertions(+), 37 deletions(-)
Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Offers a systematic way for conditional reporting of figures and tables for many
(and bivariate combinations of) variables, typically from survey data.
Contains interactive 'ggiraph'-based
(<https://CRAN.R-project.org/package=ggiraph>) plotting functions and
data frame-based summary tables (bivariate significance tests,
frequencies/proportions, unique open ended responses, etc) with
many arguments for customization, and extensions possible. Uses a global
options() system for neatly reducing redundant code.
Also contains tools for immediate saving of objects and returning a hashed link to the object,
useful for creating download links to high resolution images upon rendering in 'Quarto'.
Suitable for highly customized reports, primarily intended for survey
research.
Author: Stephan Daus [aut, cre, cph] ,
Julia Silge [ctb] ,
David Robinson [ctb] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros versions 1.5.1 dated 2025-02-12 and 1.5.3 dated 2025-06-02
DESCRIPTION | 9 +- MD5 | 35 ++++---- NEWS.md | 3 R/check_options.R | 60 +++++++++++++-- R/fig_height_h_barchart.R | 13 +-- R/make_content.cat_plot_html.R | 4 - R/make_content.cat_table_html.R | 3 R/make_content.sigtest_table_html.R | 2 build/vignette.rds |binary inst/doc/for_chapter_author.html | 45 ++--------- inst/doc/for_developers.html | 40 +--------- inst/doc/for_readers.html | 40 +--------- inst/doc/saros_name.html | 3 man/girafe.Rd | 116 ++++++++++++++--------------- man/make_link.Rd | 142 ++++++++++++++++++------------------ man/make_link.default.Rd | 142 ++++++++++++++++++------------------ man/make_link.list.Rd | 140 +++++++++++++++++------------------ tests/testthat.R | 8 +- tests/testthat/test-check_options.R |only 19 files changed, 390 insertions(+), 415 deletions(-)