Title: Quasi Analysis of Variance for K-Functions
Description: One-way and two-way analysis of variance for replicated point
patterns, grouped by one or two classification factors, on the
basis of the corresponding K-functions.
Author: Rolf Turner [aut, cre]
Maintainer: Rolf Turner <rolfturner@posteo.net>
Diff between kanova versions 0.3-18 dated 2025-07-03 and 0.3-19 dated 2025-07-13
kanova-0.3-18/kanova/inst/preVignettes/testStat.pdf |only kanova-0.3-19/kanova/ChangeLog | 12 ++++++ kanova-0.3-19/kanova/DESCRIPTION | 8 ++-- kanova-0.3-19/kanova/MD5 | 17 ++++---- kanova-0.3-19/kanova/R/kanova.R | 2 - kanova-0.3-19/kanova/data/stomata.rda |binary kanova-0.3-19/kanova/inst/doc/testStat.pdf |binary kanova-0.3-19/kanova/inst/preVignettes/testStat.log | 4 +- kanova-0.3-19/kanova/inst/preVignettes/testStat.tex | 16 ++++---- kanova-0.3-19/kanova/man/kanova.Rd | 39 +++++++++----------- 10 files changed, 54 insertions(+), 44 deletions(-)
Title: Relational Operators for Intervals
Description: Evaluating if values
of vectors are within different open/closed intervals
(`x %[]% c(a, b)`), or if two closed
intervals overlap (`c(a1, b1) %[]o[]% c(a2, b2)`).
Operators for negation and directional relations also implemented.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between intrval versions 0.1-3 dated 2024-05-20 and 1.0-0 dated 2025-07-13
DESCRIPTION | 18 ++++++++---- MD5 | 12 ++++---- NAMESPACE | 5 ++- R/intrnals.R | 80 +++++++++++++++++++++++++++++++++++++++++------------- R/zzz.R |only build/partial.rdb |binary man/opts.Rd |only tests/tests.R | 1 8 files changed, 87 insertions(+), 29 deletions(-)
Title: Analysis of Niche Evolution using Niche and Distribution Models
Description: Constructing niche models and analyzing patterns of niche evolution. Acts as an interface for many popular modeling algorithms, and allows users to conduct Monte Carlo tests to address basic questions in evolutionary ecology and biogeography. Warren, D.L., R.E. Glor, and M. Turelli (2008) <doi:10.1111/j.1558-5646.2008.00482.x> Glor, R.E., and D.L. Warren (2011) <doi:10.1111/j.1558-5646.2010.01177.x> Warren, D.L., R.E. Glor, and M. Turelli (2010) <doi:10.1111/j.1600-0587.2009.06142.x> Cardillo, M., and D.L. Warren (2016) <doi:10.1111/geb.12455> D.L. Warren, L.J. Beaumont, R. Dinnage, and J.B. Baumgartner (2019) <doi:10.1111/ecog.03900>.
Author: Dan Warren [aut, cre] ,
Russell Dinnage [aut]
Maintainer: Dan Warren <dan.l.warren@gmail.com>
Diff between ENMTools versions 1.1.2 dated 2024-01-16 and 1.1.4 dated 2025-07-13
DESCRIPTION | 16 +++++++++------- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 22 ++++++++++++++++++++++ R/background.buffer.R | 6 +++--- R/combine.species.R | 45 ++++++++++++++++++++++++++------------------- R/enmtools.bc.R | 6 +++--- R/enmtools.dm.R | 6 +++--- R/enmtools.ecospat.id.R | 16 ++++++++-------- R/enmtools.gam.R | 6 +++--- R/enmtools.glm.R | 6 +++--- R/enmtools.maxent.R | 6 +++--- R/enmtools.rf.R | 6 +++--- R/enmtools.rf.ranger.R | 6 +++--- R/enmtools.vip.R | 20 ++++++++++---------- R/moses.list.R | 4 ++-- R/visualize.enm.R | 45 +++++++++++++++++++++++++++++++-------------- man/visualize.enm.Rd | 6 +++--- 17 files changed, 151 insertions(+), 103 deletions(-)
Title: Tools for Manipulating Gas Exchange Data
Description: Set of tools for manipulating gas exchange data from cardiopulmonary exercise testing.
Author: Felipe Mattioni Maturana [aut, cre]
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between whippr versions 0.1.3 dated 2024-02-19 and 0.1.4 dated 2025-07-13
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/averages.R | 28 +++++++++++++++++++++++----- R/max.R | 2 +- R/read-data.R | 4 ++-- README.md | 26 +++++++++++++------------- man/perform_average.Rd | 13 +++++++++++++ 8 files changed, 71 insertions(+), 34 deletions(-)
Title: Tour Methods for Multivariate Data Visualisation
Description: Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
Author: Hadley Wickham [aut, ctb] ,
Dianne Cook [aut, cre] ,
Nick Spyrison [ctb] ,
Ursula Laa [ctb] ,
H. Sherry Zhang [ctb] ,
Stuart Lee [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between tourr versions 1.2.4 dated 2025-02-13 and 1.2.6 dated 2025-07-13
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/animate.r | 4 ++++ build/vignette.rds |binary inst/doc/edges.html | 4 ++-- 6 files changed, 33 insertions(+), 20 deletions(-)
Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.1.4 dated 2025-05-16 and 0.1.5 dated 2025-07-13
ReliaGrowR-0.1.4/ReliaGrowR/inst/Abstract.Rmd |only ReliaGrowR-0.1.4/ReliaGrowR/inst/Abstract.html |only ReliaGrowR-0.1.4/ReliaGrowR/inst/Abstract.log |only ReliaGrowR-0.1.4/ReliaGrowR/inst/Abstract.tex |only ReliaGrowR-0.1.5/ReliaGrowR/DESCRIPTION | 6 ReliaGrowR-0.1.5/ReliaGrowR/MD5 | 39 ++-- ReliaGrowR-0.1.5/ReliaGrowR/NAMESPACE | 2 ReliaGrowR-0.1.5/ReliaGrowR/NEWS.md | 5 ReliaGrowR-0.1.5/ReliaGrowR/R/plot_rga.R | 87 +++++---- ReliaGrowR-0.1.5/ReliaGrowR/R/rga.R | 49 ++--- ReliaGrowR-0.1.5/ReliaGrowR/inst/doc/RGA.R | 6 ReliaGrowR-0.1.5/ReliaGrowR/inst/doc/RGA.Rmd | 22 +- ReliaGrowR-0.1.5/ReliaGrowR/inst/doc/RGA.html | 64 +++--- ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.Rmd |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.docx |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.html |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.log |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.tex |only ReliaGrowR-0.1.5/ReliaGrowR/man/figures/README-unnamed-chunk-4-1.png |binary ReliaGrowR-0.1.5/ReliaGrowR/man/plot_rga.Rd | 5 ReliaGrowR-0.1.5/ReliaGrowR/man/rga.Rd | 8 ReliaGrowR-0.1.5/ReliaGrowR/tests/testthat/Rplots.pdf |binary ReliaGrowR-0.1.5/ReliaGrowR/tests/testthat/test-plot-rga.R | 70 ++++--- ReliaGrowR-0.1.5/ReliaGrowR/tests/testthat/test-rga.R | 94 +++------- ReliaGrowR-0.1.5/ReliaGrowR/vignettes/RGA.Rmd | 22 +- 25 files changed, 243 insertions(+), 236 deletions(-)
Title: Multivariate Data Handling with S4 Classes and Sparse Matrices
Description: An S4 update of the 'mefa' package
using sparse matrices for enhanced efficiency.
Sparse array-like objects are supported via
lists of sparse matrices.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between mefa4 versions 0.3-11 dated 2024-05-20 and 0.3-12 dated 2025-07-13
DESCRIPTION | 17 ++++++++++++----- MD5 | 6 +++--- build/partial.rdb |binary man/Xtab.Rd | 2 +- 4 files changed, 16 insertions(+), 9 deletions(-)
Title: Hierarchical Models Made Easy with Data Cloning
Description: S4 classes around infrastructure provided by the
'coda' and 'dclone' packages to make package development easy as a breeze
with data cloning for hierarchical models.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between dcmle versions 0.4-1 dated 2023-07-04 and 0.4-2 dated 2025-07-13
DESCRIPTION | 17 ++++++++++++----- MD5 | 6 +++--- man/dcFit-class.Rd | 2 +- man/gsFit-class.Rd | 2 +- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Description: Low level functions for implementing
maximum likelihood estimating procedures for
complex models using data cloning and Bayesian
Markov chain Monte Carlo methods
as described in Solymos 2010 <doi:10.32614/RJ-2010-011>.
Sequential and parallel MCMC support
for 'JAGS', 'WinBUGS', 'OpenBUGS', and 'Stan'.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between dclone versions 2.3-2 dated 2023-07-03 and 2.3-3 dated 2025-07-13
DESCRIPTION | 17 +++++++--- MD5 | 72 ++++++++++++++++++++++---------------------- NEWS.md | 5 +++ man/DcloneEnv.Rd | 2 - man/bugs.fit.Rd | 2 - man/bugs.parfit.Rd | 2 - man/clusterSize.Rd | 2 - man/clusterSplitSB.Rd | 2 - man/codaSamples.Rd | 2 - man/coef.mcmc.list.Rd | 2 - man/dc.fit.Rd | 2 - man/dc.parfit.Rd | 2 - man/dcFit.Rd | 2 - man/dclone-package.Rd | 2 - man/dclone.Rd | 2 - man/dcoptions.Rd | 4 +- man/dctable.Rd | 2 - man/errlines.Rd | 2 - man/evalParallelArgument.Rd | 2 - man/jags.fit.Rd | 2 - man/jags.parfit.Rd | 2 - man/jagsModel.Rd | 2 - man/lambdamax.diag.Rd | 2 - man/make.symmetric.Rd | 2 - man/mcmcapply.Rd | 2 - man/nclones.Rd | 2 - man/pairs.mcmc.list.Rd | 2 - man/parCodaSamples.Rd | 2 - man/parDosa.Rd | 2 - man/parJagsModel.Rd | 2 - man/parLoadModule.Rd | 2 - man/parSetFactory.Rd | 2 - man/parUpdate.Rd | 2 - man/parallel.inits.Rd | 2 - man/stan.fit.Rd | 2 - man/update.mcmc.list.Rd | 2 - man/write.jags.model.Rd | 2 - 37 files changed, 88 insertions(+), 76 deletions(-)
Title: Weighted-Average Least Squares Model Averaging
Description: Implements Weighted-Average Least Squares model averaging
for negative binomial regression models of Huynh (2024) <doi:10.48550/arXiv.2404.11324>,
generalized linear models of De Luca, Magnus, Peracchi (2018)
<doi:10.1016/j.jeconom.2017.12.007> and linear regression models of
Magnus, Powell, Pruefer (2010) <doi:10.1016/j.jeconom.2009.07.004>, see also
Magnus, De Luca (2016) <doi:10.1111/joes.12094>. Weighted-Average Least Squares
for the linear regression model is based on the original 'MATLAB' code by
Magnus and De Luca <https://www.janmagnus.nl/items/WALS.pdf>, see also
Kumar, Magnus (2013) <doi:10.1007/s13571-013-0060-9> and
De Luca, Magnus (2011) <doi:10.1177/1536867X1201100402>.
Author: Kevin Huynh [aut, cre]
Maintainer: Kevin Huynh <kevin.huynh-dev@gmx.ch>
Diff between WALS versions 0.2.5 dated 2024-06-21 and 0.2.6 dated 2025-07-13
DESCRIPTION | 16 MD5 | 108 +- NAMESPACE | 122 +- NEWS.md | 54 - R/WALS-package.R | 10 R/computePosterior.R | 226 ++--- R/data.R | 272 +++--- R/familyPrior.R | 452 +++++----- R/familyWALS.R | 824 +++++++++--------- R/fitNB2.R | 292 +++--- R/predictCounts.R | 128 +- R/tools.R | 1276 ++++++++++++++--------------- R/wals.R | 1666 ++++++++++++++++++------------------- R/walsGLM.R | 1694 +++++++++++++++++++------------------- R/walsNB.R | 1848 +++++++++++++++++++++--------------------- build/partial.rdb |binary inst/CITATION | 36 inst/REFERENCES.bib | 374 ++++---- man/GrowthMP.Rd | 194 ++-- man/GrowthMPP.Rd | 122 +- man/checkSingularitySVD.Rd | 44 - man/computeGamma1.Rd | 186 ++-- man/computeGamma1r.Rd | 138 +-- man/computeGammaUnSVD.Rd | 144 +-- man/computePosterior.Rd | 110 +- man/computeX2M1X2.Rd | 136 +-- man/controlGLM.Rd | 72 - man/controlNB.Rd | 126 +- man/ddweibull.Rd | 72 - man/dlaplace.Rd | 66 - man/dsubbotin.Rd | 74 - man/familyPrior.Rd | 206 ++-- man/familyWALS.Rd | 276 +++--- man/fitNB2.Rd | 112 +- man/gammaToBeta.Rd | 134 +-- man/negativeBinomial.Rd | 50 - man/predict.wals.Rd | 372 ++++---- man/predict.walsGLM.Rd | 464 +++++----- man/predictCounts.Rd | 102 +- man/semiorthogonalize.Rd | 160 +-- man/snbinom.Rd | 68 - man/svdLSplus.Rd | 114 +- man/vcov.walsNB.Rd | 42 man/wals.Rd | 432 ++++----- man/walsFit.Rd | 274 +++--- man/walsGLM.Rd | 404 ++++----- man/walsGLMfit.Rd | 198 ++-- man/walsGLMfitIterate.Rd | 244 ++--- man/walsNB.Rd | 420 ++++----- man/walsNBfit.Rd | 422 ++++----- man/walsNBfitIterate.Rd | 260 ++--- tests/testthat.R | 8 tests/testthat/test-wals.R | 460 +++++----- tests/testthat/test-walsGLM.R | 348 +++---- tests/testthat/test-walsNB.R | 514 +++++------ 55 files changed, 8483 insertions(+), 8483 deletions(-)
Title: Models and Data Sets for the Study of Species-Area Relationships
Description: Hierarchical models for the analysis of species-area
relationships (SARs) by combining several data sets and covariates;
with a global data set combining individual SAR studies;
as described in Solymos and Lele
(2012) <doi:10.1111/j.1466-8238.2011.00655.x>.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between sharx versions 1.0-6 dated 2024-05-21 and 1.0-7 dated 2025-07-13
DESCRIPTION | 17 ++++++++++++----- MD5 | 4 ++-- inst/ChangeLog | 3 +++ 3 files changed, 17 insertions(+), 7 deletions(-)
Title: Population Viability Analysis with Data Cloning
Description: Likelihood based population viability analysis in the
presence of observation error and missing data.
The package can be used to fit, compare, predict,
and forecast various growth model types using data cloning.
Author: Khurram Nadeem [aut],
Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between PVAClone versions 0.1-7 dated 2024-01-23 and 0.1-8 dated 2025-07-13
PVAClone-0.1-7/PVAClone/data/paurelia.R |only PVAClone-0.1-7/PVAClone/data/redstart.R |only PVAClone-0.1-7/PVAClone/data/songsparrow.R |only PVAClone-0.1-8/PVAClone/DESCRIPTION | 20 +++++++++++++++----- PVAClone-0.1-8/PVAClone/MD5 | 12 ++++++------ PVAClone-0.1-8/PVAClone/build/partial.rdb |binary PVAClone-0.1-8/PVAClone/data/paurelia.rda |only PVAClone-0.1-8/PVAClone/data/redstart.rda |only PVAClone-0.1-8/PVAClone/data/songsparrow.rda |only PVAClone-0.1-8/PVAClone/man/pva-class.Rd | 2 +- 10 files changed, 22 insertions(+), 12 deletions(-)
Title: Likelihood Based Optimal Partitioning and Indicator Species
Analysis
Description: Likelihood based optimal partitioning and indicator
species analysis. Finding the best binary partition for each species
based on model selection, with the possibility to take into account
modifying/confounding variables as described
in Kemencei et al. (2014) <doi:10.1556/ComEc.15.2014.2.6>.
The package implements binary and multi-level response models,
various measures of uncertainty, Lorenz-curve based thresholding,
with native support for parallel computations.
Author: Peter Solymos [aut, cre] ,
Ermias T. Azeria [ctb]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between opticut versions 0.1-3 dated 2024-05-21 and 0.1-4 dated 2025-07-13
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 19 insertions(+), 7 deletions(-)
Title: Agent-Based Bird Point Count Simulator
Description: A highly scientific and utterly addictive
bird point count simulator
to test statistical assumptions, aid survey design,
and have fun while doing it (Solymos 2024 <doi:10.1007/s42977-023-00183-2>).
The simulations follow time-removal and distance sampling models
based on Matsuoka et al. (2012) <doi:10.1525/auk.2012.11190>,
Solymos et al. (2013) <doi:10.1111/2041-210X.12106>,
and Solymos et al. (2018) <doi:10.1650/CONDOR-18-32.1>,
and sound attenuation experiments by
Yip et al. (2017) <doi:10.1650/CONDOR-16-93.1>.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between bSims versions 0.3-2 dated 2024-05-21 and 0.3-3 dated 2025-07-13
DESCRIPTION | 17 MD5 | 14 NEWS.md | 4 build/vignette.rds |binary inst/doc/bsims02-layers.R | 20 - inst/doc/bsims02-layers.html | 705 ++++++++++++++++++++--------------------- inst/doc/bsims03-workflow.R | 18 - inst/doc/bsims03-workflow.html | 323 +++++++++--------- 8 files changed, 555 insertions(+), 546 deletions(-)
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
Author: Peter Solymos [aut, cre]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between mefa versions 3.2-9 dated 2024-05-20 and 3.2-10 dated 2025-07-13
DESCRIPTION | 17 ++++++++++++----- MD5 | 6 +++--- build/partial.rdb |binary inst/ChangeLog | 4 ++++ 4 files changed, 19 insertions(+), 8 deletions(-)
Title: Set Alpha Based on Sample Size Using Bayes Factors
Description: Sets the alpha level for coefficients in a regression model
as a decreasing function of the sample size through the use of
Jeffreys' Approximate Bayes factor. You tell alphaN() your sample
size, and it tells you to which value you must lower alpha to avoid
Lindley's Paradox. For details, see Wulff and Taylor (2024)
<doi:10.1177/14761270231214429>.
Author: Jesper Wulff [aut, cre] ,
Luke Taylor [aut]
Maintainer: Jesper Wulff <jwulff@econ.au.dk>
Diff between alphaN versions 0.1.0 dated 2023-01-12 and 0.1.2 dated 2025-07-13
alphaN-0.1.0/alphaN/inst/CITATION |only alphaN-0.1.2/alphaN/DESCRIPTION | 15 +- alphaN-0.1.2/alphaN/MD5 | 18 +-- alphaN-0.1.2/alphaN/NEWS.md | 6 + alphaN-0.1.2/alphaN/README.md | 27 ++++- alphaN-0.1.2/alphaN/build/vignette.rds |binary alphaN-0.1.2/alphaN/inst/doc/intro-alphaN.R | 26 ----- alphaN-0.1.2/alphaN/inst/doc/intro-alphaN.Rmd | 56 ---------- alphaN-0.1.2/alphaN/inst/doc/intro-alphaN.html | 129 ++----------------------- alphaN-0.1.2/alphaN/man/figures |only alphaN-0.1.2/alphaN/vignettes/intro-alphaN.Rmd | 56 ---------- 11 files changed, 59 insertions(+), 274 deletions(-)
Title: Find Routes for Supersonic Aircraft
Description: For supersonic aircraft, flying subsonic over land,
find the best route between airports. Allow for coastal buffer and
potentially closed regions. Use a minimal model of aircraft
performance: the focus is on time saved versus subsonic flight, rather
than on vertical flight profile. For modelling and forecasting, not for planning your
flight!
Author: David Marsh [aut, cre],
Enrico Spinielli [ctb],
EUROCONTROL [fnd, cph]
Maintainer: David Marsh <david6marsh@gmail.com>
Diff between himach versions 0.3.2 dated 2023-09-20 and 1.0.0 dated 2025-07-13
himach-0.3.2/himach/vignettes/EDDF_KBOS_speed.png |only himach-0.3.2/himach/vignettes/EDDF_KBOS_time.png |only himach-0.3.2/himach/vignettes/polar_examples.png |only himach-0.3.2/himach/vignettes/refuel_examples_pacific.png |only himach-0.3.2/himach/vignettes/three_routes.png |only himach-1.0.0/himach/DESCRIPTION | 25 ++-- himach-1.0.0/himach/MD5 | 50 ++++---- himach-1.0.0/himach/NEWS.md | 6 + himach-1.0.0/himach/R/grids.R | 22 +-- himach-1.0.0/himach/R/routes.R | 52 ++++---- himach-1.0.0/himach/README.md | 10 - himach-1.0.0/himach/build/vignette.rds |binary himach-1.0.0/himach/inst/doc/Supersonic_Routes.R | 6 - himach-1.0.0/himach/inst/doc/Supersonic_Routes.Rmd | 8 - himach-1.0.0/himach/inst/doc/Supersonic_Routes.html | 58 ++++----- himach-1.0.0/himach/inst/doc/Supersonic_Routes_in_depth.R | 66 +++++------ himach-1.0.0/himach/inst/doc/Supersonic_Routes_in_depth.Rmd | 6 - himach-1.0.0/himach/inst/doc/Supersonic_Routes_in_depth.html | 30 ++--- himach-1.0.0/himach/man/figures |only himach-1.0.0/himach/man/find_leg.Rd | 2 himach-1.0.0/himach/man/find_route.Rd | 2 himach-1.0.0/himach/man/find_routes.Rd | 2 himach-1.0.0/himach/man/himach-package.Rd | 3 himach-1.0.0/himach/tests/testthat/test_grid.R | 8 - himach-1.0.0/himach/tests/testthat/test_routes.R | 18 +-- himach-1.0.0/himach/vignettes/Supersonic_Routes.Rmd | 8 - himach-1.0.0/himach/vignettes/Supersonic_Routes_in_depth.Rmd | 6 - 27 files changed, 194 insertions(+), 194 deletions(-)
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include piecewise linear regression
models, multilevel models, overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u',
'baseline corrected tau', 'CDC'), and randomization tests. Data preparation functions
support outlier detection, handling missing values, scaling, and custom transformations.
An export function helps to generate
html, word, and latex tables in a publication friendly style. More details can be
found in the online book 'Analyzing single-case data with R and scan', Juergen Wilbert (2025)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scan versions 0.65.0 dated 2025-06-29 and 0.65.1 dated 2025-07-13
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 8 +++++++- R/export.R | 8 +++++--- R/export.sc_trend.R | 12 ++++++++---- R/plm.R | 2 +- R/plm_contrasts.R | 8 +++++--- R/print-export-plm.R | 28 +++++++++++++++------------- R/private-utilities.R | 26 ++++++++++++-------------- man/bplm.Rd | 3 +-- man/export.Rd | 7 +++---- man/hplm.Rd | 3 +-- man/pand.Rd | 3 +-- man/plm.Rd | 3 +++ man/tau_u.Rd | 3 +-- 15 files changed, 81 insertions(+), 69 deletions(-)
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Description: Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
Author: Teng Fei [aut, cre, cph] ,
Tyler Funnell [aut] ,
Nicholas Waters [aut] ,
Sandeep Raj [aut]
Maintainer: Teng Fei <feit1@mskcc.org>
Diff between FLORAL versions 0.4.0 dated 2025-02-17 and 0.5.0 dated 2025-07-13
DESCRIPTION | 17 - MD5 | 29 - NEWS.md | 8 R/sysdata.rda |only README.md | 62 ++-- inst/WORDLIST | 6 inst/doc/Using-FLORAL-for-Microbiome-Analysis.Rmd | 322 ++++++++++----------- inst/doc/Using-FLORAL-for-Microbiome-Analysis.html | 138 ++++----- inst/doc/Using-FLORAL-with-phyloseq.R | 11 inst/doc/Using-FLORAL-with-phyloseq.Rmd | 11 inst/doc/Using-FLORAL-with-phyloseq.html | 25 - man/figures/README-plot-1.png |binary man/figures/README-plot-2.png |binary tests/testthat/test-utils.R | 6 vignettes/Using-FLORAL-for-Microbiome-Analysis.Rmd | 322 ++++++++++----------- vignettes/Using-FLORAL-with-phyloseq.Rmd | 11 16 files changed, 489 insertions(+), 479 deletions(-)
Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'pedsuite', a collection of packages for
pedigree analysis. A detailed presentation of the 'pedsuite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedtools versions 2.8.1 dated 2025-04-29 and 2.8.2 dated 2025-07-13
DESCRIPTION | 10 ++--- MD5 | 32 +++++++++--------- NEWS.md | 17 +++++++++ R/getMap.R | 20 +++++++---- R/marker_distribute.R | 80 ++++++++++++++++++++++++++++++++------------- R/marker_setattr.R | 63 ++++++++++++++++++++++------------- R/marker_setattr_inplace.R | 2 - R/ped_plot.R | 23 +++++++----- R/plot_methods.R | 71 ++++++++++++++++++++++++++++++++++----- R/setMutmod.R | 8 ++-- build/vignette.rds |binary inst/doc/pedtools.html | 4 +- man/getMap.Rd | 4 +- man/marker_setattr.Rd | 13 +++---- man/plot.ped.Rd | 20 ++++++----- man/plotmethods.Rd | 20 ++++++++--- man/setSNPs.Rd | 17 ++++++--- 17 files changed, 278 insertions(+), 126 deletions(-)
Title: 'HiGHS' Optimization Solver
Description: R interface to 'HiGHS', an optimization solver for solving mixed integer
optimization problems with quadratic or linear objective and linear constraints.
Author: Florian Schwendinger [aut, cre],
Dirk Schumacher [aut],
Julian Hall [cph],
Ivet Galabova [cph],
Leona Gottwald [cph],
Michael Feldmeier [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between highs versions 1.10.0-2 dated 2025-05-16 and 1.10.0-3 dated 2025-07-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/highs.R | 5 ++++- 3 files changed, 9 insertions(+), 6 deletions(-)
Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling
for dichotomous and polytomous item responses. This package enables the estimation of
the DINA and DINO model (Junker & Sijtsma, 2001, <doi:10.1177/01466210122032064>),
the multiple group (polytomous) GDINA model (de la Torre, 2011,
<doi:10.1007/s11336-011-9207-7>), the multiple choice DINA model (de la Torre, 2009,
<doi:10.1177/0146621608320523>), the general diagnostic model (GDM; von Davier, 2008,
<doi:10.1348/000711007X193957>), the structured latent class model (SLCA; Formann, 1992,
<doi:10.1080/01621459.1992.10475229>) and regularized latent class analysis
(Chen, Li, Liu, & Ying, 2017, <doi:10.1007/s11336-016-9545-6>).
See George, Robitzsch, Kiefer, Gross, and Uenlue (2017) <doi:10.18637/jss.v074.i02>
or Robitzsch and George (2019, <doi:10.1007/978-3-030-05584-4_26>)
for further details on estimation and the package structure.
For tutorial [...truncated...]
Author: Alexander Robitzsch [aut, cre],
Thomas Kiefer [aut],
Ann Cathrice George [aut],
Ali Uenlue [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between CDM versions 8.2-6 dated 2022-08-25 and 8.3-14 dated 2025-07-13
CDM-8.2-6/CDM/R/vcov.loglike.din.R |only CDM-8.3-14/CDM/DESCRIPTION | 30 + CDM-8.3-14/CDM/MD5 | 164 +++++----- CDM-8.3-14/CDM/NAMESPACE | 2 CDM-8.3-14/CDM/R/IRT.RMSD.R | 2 CDM-8.3-14/CDM/R/IRT.modelfit.R | 10 CDM-8.3-14/CDM/R/IRT_RMSD_calc_rmsd.R | 11 CDM-8.3-14/CDM/R/IRT_RMSD_summary_print_statistics.R | 4 CDM-8.3-14/CDM/R/RcppExports.R | 2 CDM-8.3-14/CDM/R/array3_sum.R | 6 CDM-8.3-14/CDM/R/attach_environment.R | 4 CDM-8.3-14/CDM/R/cat_paste.R | 4 CDM-8.3-14/CDM/R/cdi.kli.R | 12 CDM-8.3-14/CDM/R/cdm.est.calc.accuracy.R | 4 CDM-8.3-14/CDM/R/cdm_attach_exported_function.R | 4 CDM-8.3-14/CDM/R/cdm_attach_internal_function.R | 4 CDM-8.3-14/CDM/R/cdm_calc_increment.R | 4 CDM-8.3-14/CDM/R/cdm_calc_posterior.R | 8 CDM-8.3-14/CDM/R/cdm_est_calc_accuracy_version1.R | 34 +- CDM-8.3-14/CDM/R/cdm_est_calc_accuracy_version1_computation.R | 6 CDM-8.3-14/CDM/R/din.R | 10 CDM-8.3-14/CDM/R/gdina.R | 18 - CDM-8.3-14/CDM/R/gdina_attr_rpf_hogdina.R | 7 CDM-8.3-14/CDM/R/gdina_attribute_structure_hogdina.R | 9 CDM-8.3-14/CDM/R/gdina_calc_expected_counts.R | 12 CDM-8.3-14/CDM/R/gdina_calc_ic.R | 6 CDM-8.3-14/CDM/R/gdina_calc_individual_likelihood.R | 8 CDM-8.3-14/CDM/R/gdina_calc_loglikelihood.R | 27 - CDM-8.3-14/CDM/R/numerical_Hessian.R | 5 CDM-8.3-14/CDM/R/slca.R | 28 - CDM-8.3-14/CDM/R/slca_est_skillspace.R | 9 CDM-8.3-14/CDM/R/vcov.din.R | 10 CDM-8.3-14/CDM/R/vcov_loglike_din.R |only CDM-8.3-14/CDM/README.md | 4 CDM-8.3-14/CDM/build/partial.rdb |binary CDM-8.3-14/CDM/data/data.Students.rda |binary CDM-8.3-14/CDM/data/data.cdm01.rda |binary CDM-8.3-14/CDM/data/data.cdm02.rda |binary CDM-8.3-14/CDM/data/data.cdm03.rda |binary CDM-8.3-14/CDM/data/data.cdm04.rda |binary CDM-8.3-14/CDM/data/data.cdm05.rda |binary CDM-8.3-14/CDM/data/data.cdm06.rda |binary CDM-8.3-14/CDM/data/data.cdm07.rda |binary CDM-8.3-14/CDM/data/data.cdm08.rda |binary CDM-8.3-14/CDM/data/data.cdm09.rda |binary CDM-8.3-14/CDM/data/data.cdm10.rda |binary CDM-8.3-14/CDM/data/data.dcm.rda |binary CDM-8.3-14/CDM/data/data.dtmr.rda |binary CDM-8.3-14/CDM/data/data.ecpe.rda |binary CDM-8.3-14/CDM/data/data.fraction1.rda |binary CDM-8.3-14/CDM/data/data.fraction2.rda |binary CDM-8.3-14/CDM/data/data.fraction3.rda |binary CDM-8.3-14/CDM/data/data.fraction4.rda |binary CDM-8.3-14/CDM/data/data.fraction5.rda |binary CDM-8.3-14/CDM/data/data.hr.rda |binary CDM-8.3-14/CDM/data/data.jang.rda |binary CDM-8.3-14/CDM/data/data.melab.rda |binary CDM-8.3-14/CDM/data/data.mg.rda |binary CDM-8.3-14/CDM/data/data.pgdina.rda |binary CDM-8.3-14/CDM/data/data.pisa00R.cc.rda |binary CDM-8.3-14/CDM/data/data.pisa00R.ct.rda |binary CDM-8.3-14/CDM/data/data.sda6.rda |binary CDM-8.3-14/CDM/data/data.timss03.G8.su.rda |binary CDM-8.3-14/CDM/data/data.timss07.G4.Qdomains.rda |binary CDM-8.3-14/CDM/data/data.timss07.G4.lee.rda |binary CDM-8.3-14/CDM/data/data.timss07.G4.py.rda |binary CDM-8.3-14/CDM/data/data.timss11.G4.AUT.part.rda |binary CDM-8.3-14/CDM/data/data.timss11.G4.AUT.rda |binary CDM-8.3-14/CDM/data/data.timss11.G4.sa.rda |binary CDM-8.3-14/CDM/data/fraction.subtraction.data.rda |binary CDM-8.3-14/CDM/data/fraction.subtraction.qmatrix.rda |binary CDM-8.3-14/CDM/data/sim.dina.rda |binary CDM-8.3-14/CDM/data/sim.dino.rda |binary CDM-8.3-14/CDM/data/sim.qmatrix.rda |binary CDM-8.3-14/CDM/inst/CITATION | 6 CDM-8.3-14/CDM/inst/NEWS | 11 CDM-8.3-14/CDM/man/IRT.modelfit.Rd | 8 CDM-8.3-14/CDM/man/data.dtmr.Rd | 10 CDM-8.3-14/CDM/man/data.ecpe.Rd | 4 CDM-8.3-14/CDM/man/data.fraction.Rd | 4 CDM-8.3-14/CDM/man/discrim.index.Rd | 4 CDM-8.3-14/CDM/src/RcppExports.cpp | 2 CDM-8.3-14/CDM/src/cdm_rcpp_kli.cpp | 11 CDM-8.3-14/CDM/src/init.c | 2 84 files changed, 292 insertions(+), 238 deletions(-)
Title: Interfacing 'NaileR' with 'Shiny'
Description: A very small package for more convenient use of 'NaileR'. You provide a data set containing a latent variable you want to understand. It generates a description and an interpretation of this latent variable using a Large Language Model. For perceptual data, it describes the stimuli used in the experiment.
Author: Sebastien Le [aut, cre]
Maintainer: Sebastien Le <sebastien.le@institut-agro.fr>
Diff between PolisheR versions 1.0.0 dated 2024-11-29 and 1.1.0 dated 2025-07-13
DESCRIPTION | 13 +- MD5 | 10 +- NAMESPACE | 6 + R/shiny_nail_catdes.R |only R/shiny_nail_condes.R |only R/shiny_nail_qda.R | 219 ++++++++++++++++++++++------------------------- man/shiny_nail_catdes.Rd |only man/shiny_nail_condes.Rd |only 8 files changed, 125 insertions(+), 123 deletions(-)
Title: Interpreting Latent Variables with AI
Description: A small package designed for interpreting continuous and categorical latent variables. You provide a data set with a latent variable you want to understand and some other explanatory variables. It provides a description of the latent variable based on the explanatory variables. It also provides a name to the latent variable.
Author: Nel Herve [aut],
Sebastien Le [aut, cre]
Maintainer: Sebastien Le <sebastien.le@institut-agro.fr>
Diff between NaileR versions 1.2.2 dated 2025-02-18 and 1.2.3 dated 2025-07-13
DESCRIPTION | 11 - MD5 | 26 ++- NAMESPACE | 5 NEWS.md |only R/nail_catdes.R | 387 ++++++++++++++++++++++++++++++++++++----------------- R/nail_condes.R | 83 ++++++++++- R/nail_qda.R | 4 R/nail_sort.R | 145 ++++++++++++++----- README.md | 8 - build |only inst |only man/nail_condes.Rd | 3 man/nail_sort.Rd | 38 ++++- vignettes |only 14 files changed, 518 insertions(+), 192 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R'.
This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2021).
<doi:10.3233/DS-210031>.
Author: Caspar J. Van Lissa [aut, cre] ,
Aaron Peikert [aut] ,
Andreas M. Brandmaier [aut]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between worcs versions 0.1.18 dated 2025-05-16 and 0.1.19 dated 2025-07-13
DESCRIPTION | 13 ++--- MD5 | 31 ++++++------ NAMESPACE | 4 + R/check_installation.R | 9 +-- R/github.R | 17 +++--- R/github_actions.R | 16 ++++++ R/targets.R | 4 - R/testthat.R |only R/worcs_project.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/citation.html | 9 +-- man/add_testthat.Rd |only man/git_release_publish.Rd |only man/git_remote_create.Rd | 81 ++++++++++---------------------- man/github_action_check_endpoints.Rd | 63 +++++++++++++------------ man/list_endpoints.Rd | 76 +++++++++++++++--------------- man/remove_endpoint.Rd | 88 +++++++++++++++++------------------ 18 files changed, 207 insertions(+), 206 deletions(-)
Title: FAIR Theory Construction
Description: An integrated suite of tools for creating, maintaining, and reusing
FAIR (Findable, Accessible, Interoperable, Reusable) theories.
Designed to support transparent and collaborative theory development,
the package enables users to formalize theories,
track changes with version control,
assess pre-empirical coherence,
and derive testable hypotheses.
Aligning with open science principles and workflows,
'theorytools' facilitates the systematic improvement of theoretical frameworks
and enhances their discoverability and usability.
Author: Caspar J. Van Lissa [aut, cre]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between theorytools versions 0.1.1 dated 2025-06-23 and 0.1.2 dated 2025-07-13
DESCRIPTION | 6 MD5 | 54 ++-- NAMESPACE | 2 NEWS.md | 6 R/dagitty.R | 46 +++ R/derive_formula.R | 3 R/download_theory.R | 2 build/vignette.rds |binary inst/doc/causal-inference.Rmd | 8 inst/doc/causal-inference.html | 30 +- inst/doc/computational_social_science.R |only inst/doc/computational_social_science.Rmd |only inst/doc/computational_social_science.html |only inst/doc/dunning-kruger.R | 13 - inst/doc/dunning-kruger.Rmd | 21 + inst/doc/dunning-kruger.html | 8 inst/doc/fair-theory.Rmd | 4 inst/doc/fair-theory.html | 4 inst/doc/readme.Rmd | 2 inst/doc/readme.html | 2 man/prune_dag.Rd |only tests/testthat/tests-empty_formula.R |only vignettes/causal-inference.Rmd | 8 vignettes/computational.bib |only vignettes/computational_social_science.Rmd |only vignettes/dunning-kruger.Rmd | 21 + vignettes/fair-theory.Rmd | 4 vignettes/readme.Rmd | 2 vignettes/theory |only vignettes/vignettes.bib | 362 ++++++++++++++++------------- vignettes/visnetwork.png |only 31 files changed, 377 insertions(+), 231 deletions(-)
Title: Confounder-Adjusted Survival Curves and Cumulative Incidence
Functions
Description: Estimate and plot confounder-adjusted survival curves using
either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values',
various forms of 'Inverse Probability of Treatment Weighting', two
forms of 'Augmented Inverse Probability of Treatment Weighting',
'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'.
Also includes a significance test for the difference
between two adjusted survival curves and the calculation of adjusted
restricted mean survival times. Additionally enables the user to
estimate and plot cause-specific confounder-adjusted cumulative
incidence functions in the competing risks setting using the same
methods (with some exceptions).
For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between adjustedCurves versions 0.11.2 dated 2024-07-29 and 0.11.3 dated 2025-07-13
adjustedCurves-0.11.2/adjustedCurves/inst/doc/introduction.R |only adjustedCurves-0.11.2/adjustedCurves/inst/doc/introduction.Rmd |only adjustedCurves-0.11.2/adjustedCurves/inst/doc/introduction.html |only adjustedCurves-0.11.2/adjustedCurves/vignettes/introduction.Rmd |only adjustedCurves-0.11.3/adjustedCurves/DESCRIPTION | 8 adjustedCurves-0.11.3/adjustedCurves/MD5 | 89 adjustedCurves-0.11.3/adjustedCurves/NEWS.md | 98 adjustedCurves-0.11.3/adjustedCurves/R/adjusted_auc.r | 38 adjustedCurves-0.11.3/adjustedCurves/R/adjusted_curve_diff.r | 194 - adjustedCurves-0.11.3/adjustedCurves/R/adjusted_curve_test.r | 1334 ++++------ adjustedCurves-0.11.3/adjustedCurves/R/adjusted_surv_quantile.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/adjustedcif.r | 48 adjustedCurves-0.11.3/adjustedCurves/R/adjustedsurv.r | 47 adjustedCurves-0.11.3/adjustedCurves/R/ce_model_mi.r | 108 adjustedCurves-0.11.3/adjustedCurves/R/helper_functions.r | 27 adjustedCurves-0.11.3/adjustedCurves/R/input_checks.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/integral_calculation.r | 432 +-- adjustedCurves-0.11.3/adjustedCurves/R/method_aiptw.r | 16 adjustedCurves-0.11.3/adjustedCurves/R/method_aiptw_pseudo.r | 348 +- adjustedCurves-0.11.3/adjustedCurves/R/method_direct.r | 33 adjustedCurves-0.11.3/adjustedCurves/R/method_direct_pseudo.r | 270 -- adjustedCurves-0.11.3/adjustedCurves/R/method_emp_lik.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/method_iptw.r | 22 adjustedCurves-0.11.3/adjustedCurves/R/method_iptw_pseudo.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/method_matching.r | 220 - adjustedCurves-0.11.3/adjustedCurves/R/method_stratification.r | 586 ++-- adjustedCurves-0.11.3/adjustedCurves/R/method_unadjusted.r | 184 - adjustedCurves-0.11.3/adjustedCurves/R/plot.adjustedcif.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/plot.adjustedsurv.r | 964 +++---- adjustedCurves-0.11.3/adjustedCurves/R/plot_auc_curve.r | 14 adjustedCurves-0.11.3/adjustedCurves/R/plot_curve_diff.r | 716 ++--- adjustedCurves-0.11.3/adjustedCurves/R/risk_tables.r | 648 ++-- adjustedCurves-0.11.3/adjustedCurves/R/simulation_functions.r | 596 ++-- adjustedCurves-0.11.3/adjustedCurves/README.md | 95 adjustedCurves-0.11.3/adjustedCurves/build/vignette.rds |binary adjustedCurves-0.11.3/adjustedCurves/inst/doc/adjustedCurves.R |only adjustedCurves-0.11.3/adjustedCurves/inst/doc/adjustedCurves.Rmd |only adjustedCurves-0.11.3/adjustedCurves/inst/doc/adjustedCurves.html |only adjustedCurves-0.11.3/adjustedCurves/inst/doc/comparing_groups.R | 2 adjustedCurves-0.11.3/adjustedCurves/inst/doc/comparing_groups.html | 28 adjustedCurves-0.11.3/adjustedCurves/inst/doc/plot_customization.R | 2 adjustedCurves-0.11.3/adjustedCurves/inst/doc/plot_customization.html | 56 adjustedCurves-0.11.3/adjustedCurves/man/adjustedCurves.Rd | 2 adjustedCurves-0.11.3/adjustedCurves/man/adjusted_rmst.Rd | 7 adjustedCurves-0.11.3/adjustedCurves/man/adjusted_rmtl.Rd | 7 adjustedCurves-0.11.3/adjustedCurves/man/figures/README-unnamed-chunk-4-1.png |only adjustedCurves-0.11.3/adjustedCurves/man/figures/README-unnamed-chunk-5-1.png |only adjustedCurves-0.11.3/adjustedCurves/man/figures/README-unnamed-chunk-6-1.png |only adjustedCurves-0.11.3/adjustedCurves/man/surv_iptw_km.Rd | 3 adjustedCurves-0.11.3/adjustedCurves/tests/testthat/test_general_stuff.r | 80 adjustedCurves-0.11.3/adjustedCurves/vignettes/adjustedCurves.Rmd |only 51 files changed, 3601 insertions(+), 3791 deletions(-)
More information about adjustedCurves at CRAN
Permanent link
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 2.0.2 dated 2025-04-08 and 2.0.5 dated 2025-07-13
DESCRIPTION | 8 MD5 | 80 ++--- NAMESPACE | 2 NEWS.md | 44 +++ R/TMBtrait.R | 255 ++++++++++-------- R/VP.gllvm.R | 17 - R/coefplot.gllvm.R | 17 - R/confint.gllvm.R | 13 R/getEnvironCov.gllvm.R | 18 + R/getResidualCov.gllvm.R | 22 - R/gllvm.R | 155 ++++++----- R/gllvm.TMB.R | 356 ++++++++++++++----------- R/gllvm.auxiliary.R | 605 ++++++++++++++++++++++---------------------- R/gllvm.iter.R | 2 R/goodnessOfFit.gllvm.R | 2 R/ordiplot.gllvm.R | 209 ++++++++------- R/predict.gllvm.R | 32 +- R/randomCoefplot.R | 33 +- R/residuals.gllvm.R | 44 ++- R/se.gllvm.R | 55 +++- R/simulate.gllvm.R | 18 + R/update.gllvm.R | 43 ++- inst/doc/vignette1.Rmd | 6 inst/doc/vignette1.html | 162 +++-------- inst/doc/vignette2.html | 26 - inst/doc/vignette3.html | 346 ++++++++++++------------- inst/doc/vignette4.html | 134 ++++----- inst/doc/vignette5.html | 8 inst/doc/vignette8.html | 6 man/Skabbholmen.Rd | 22 - man/coefplot.gllvm.Rd | 3 man/fungi.Rd | 3 man/getEnvironCov.gllvm.Rd | 6 man/gllvm.Rd | 18 - man/goodnessOfFit.Rd | 118 ++++---- man/ordiplot.gllvm.Rd | 2 man/randomCoefplot.gllvm.Rd | 3 src/distrib.h | 2 src/gllvm.cpp | 523 ++++++++++++++++++++++++++++++-------- src/utils.h | 115 ++++++++ vignettes/vignette1.Rmd | 6 41 files changed, 2119 insertions(+), 1420 deletions(-)
Title: Fast Serializable Random Forests Based on 'ranger'
Description: An updated implementation of R package 'ranger' by Wright et al,
(2017) <doi:10.18637/jss.v077.i01> for training and predicting from random
forests, particularly suited to high-dimensional data, and for embedding in
'Multiple Imputation by Chained Equations' (MICE) by van Buuren (2007)
<doi:10.1177/0962280206074463>. Ensembles of classification and regression
trees are currently supported. Sparse data of class 'dgCMatrix' (R package
'Matrix') can be directly analyzed. Conventional bagged predictions are
available alongside an efficient prediction for MICE via the algorithm
proposed by Doove et al (2014) <doi:10.1016/j.csda.2013.10.025>. Trained
forests can be written to and read from storage. Survival and probability
forests are not supported in the update, nor is data of class 'gwaa.data'
(R package 'GenABEL'); use the original 'ranger' package for these analyses.
Author: Stephen Wade [aut, cre] ,
Marvin N Wright [ctb]
Maintainer: Stephen Wade <stephematician@gmail.com>
Diff between literanger versions 0.1.1 dated 2024-09-22 and 0.2.0 dated 2025-07-13
literanger-0.1.1/literanger/src/literanger/TreeParameters.h |only literanger-0.2.0/literanger/DESCRIPTION | 21 literanger-0.2.0/literanger/MD5 | 107 +- literanger-0.2.0/literanger/NAMESPACE | 1 literanger-0.2.0/literanger/NEWS.md | 14 literanger-0.2.0/literanger/R/cpp11.R | 4 literanger-0.2.0/literanger/R/io.R | 32 literanger-0.2.0/literanger/R/literanger-package.R | 7 literanger-0.2.0/literanger/R/merge.R |only literanger-0.2.0/literanger/R/predict.R | 32 literanger-0.2.0/literanger/R/train.R | 89 +- literanger-0.2.0/literanger/README.md | 16 literanger-0.2.0/literanger/build/partial.rdb |binary literanger-0.2.0/literanger/man/literanger-package.Rd | 7 literanger-0.2.0/literanger/man/merge.literanger.Rd |only literanger-0.2.0/literanger/man/predict.literanger.Rd | 16 literanger-0.2.0/literanger/man/read_literanger.Rd | 2 literanger-0.2.0/literanger/man/train.Rd | 34 literanger-0.2.0/literanger/man/write_literanger.Rd | 10 literanger-0.2.0/literanger/src/cpp11.cpp | 8 literanger-0.2.0/literanger/src/cpp11_io.cpp | 106 -- literanger-0.2.0/literanger/src/cpp11_merge.cpp |only literanger-0.2.0/literanger/src/cpp11_merge.decl.h |only literanger-0.2.0/literanger/src/cpp11_predict.cpp | 32 literanger-0.2.0/literanger/src/cpp11_predict.decl.h | 18 literanger-0.2.0/literanger/src/cpp11_train.cpp | 83 -- literanger-0.2.0/literanger/src/cpp11_train.decl.h | 20 literanger-0.2.0/literanger/src/cpp11_utility.h | 2 literanger-0.2.0/literanger/src/literanger/Data.decl.h | 111 +-- literanger-0.2.0/literanger/src/literanger/Data.defn.h | 95 +- literanger-0.2.0/literanger/src/literanger/DataVector.h | 40 - literanger-0.2.0/literanger/src/literanger/Forest.decl.h | 106 +- literanger-0.2.0/literanger/src/literanger/Forest.defn.h | 87 +- literanger-0.2.0/literanger/src/literanger/ForestBase.decl.h | 129 ++- literanger-0.2.0/literanger/src/literanger/ForestBase.defn.h | 63 - literanger-0.2.0/literanger/src/literanger/ForestClassification.decl.h | 115 +-- literanger-0.2.0/literanger/src/literanger/ForestClassification.defn.h | 145 +-- literanger-0.2.0/literanger/src/literanger/ForestRegression.decl.h | 84 +- literanger-0.2.0/literanger/src/literanger/ForestRegression.defn.h | 72 + literanger-0.2.0/literanger/src/literanger/TrainingParameters.h |only literanger-0.2.0/literanger/src/literanger/Tree.decl.h | 119 ++- literanger-0.2.0/literanger/src/literanger/Tree.defn.h | 228 ++++-- literanger-0.2.0/literanger/src/literanger/TreeBase.decl.h | 252 +++--- literanger-0.2.0/literanger/src/literanger/TreeBase.defn.h | 222 +++--- literanger-0.2.0/literanger/src/literanger/TreeClassification.decl.h | 177 +++- literanger-0.2.0/literanger/src/literanger/TreeClassification.defn.h | 330 ++++----- literanger-0.2.0/literanger/src/literanger/TreeRegression.decl.h | 164 +++- literanger-0.2.0/literanger/src/literanger/TreeRegression.defn.h | 365 +++++----- literanger-0.2.0/literanger/src/literanger/enum_types.h | 46 - literanger-0.2.0/literanger/src/literanger/globals.h | 15 literanger-0.2.0/literanger/src/literanger/utility_draw.h | 25 literanger-0.2.0/literanger/src/literanger/utility_math.h | 21 literanger-0.2.0/literanger/tests/testthat/test-classification.R | 20 literanger-0.2.0/literanger/tests/testthat/test-merge.R |only literanger-0.2.0/literanger/tests/testthat/test-regression.R | 11 literanger-0.2.0/literanger/tests/testthat/test-sparse.R | 4 literanger-0.2.0/literanger/tests/testthat/test-train.R | 10 literanger-0.2.0/literanger/tests/testthat/test-unordered.R | 8 58 files changed, 2041 insertions(+), 1684 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] ,
Zoltan Herczeg [ctb, cph] ,
University of Cambridge [cph] ,
Tilera Corporation [cph] ,
Yann Collet [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.16.0 dated 2023-11-28 and 0.17.0 dated 2025-07-13
stringfish-0.16.0/stringfish/R/sf_functions.r |only stringfish-0.16.0/stringfish/inst/extra_tests/benchmark_test.r |only stringfish-0.17.0/stringfish/ChangeLog | 4 stringfish-0.17.0/stringfish/DESCRIPTION | 14 stringfish-0.17.0/stringfish/MD5 | 34 stringfish-0.17.0/stringfish/R/sf_functions.R |only stringfish-0.17.0/stringfish/README.md | 4 stringfish-0.17.0/stringfish/build/vignette.rds |binary stringfish-0.17.0/stringfish/configure | 709 +++++----- stringfish-0.17.0/stringfish/inst/doc/vignette.R | 4 stringfish-0.17.0/stringfish/inst/doc/vignette.html | 187 +- stringfish-0.17.0/stringfish/inst/doc/vignette.rmd | 4 stringfish-0.17.0/stringfish/inst/extra_tests/benchmark_test.R |only stringfish-0.17.0/stringfish/inst/include/sf_internal.h | 15 stringfish-0.17.0/stringfish/src/Makevars.in | 1 stringfish-0.17.0/stringfish/src/Makevars.win | 2 stringfish-0.17.0/stringfish/src/sf_altrep.h | 7 stringfish-0.17.0/stringfish/src/sf_functions.cpp | 2 stringfish-0.17.0/stringfish/tests/tests.R | 16 stringfish-0.17.0/stringfish/vignettes/vignette.rmd | 4 20 files changed, 546 insertions(+), 461 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
Maximilian Girlich [ctb]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between httr2 versions 1.1.2 dated 2025-03-26 and 1.2.0 dated 2025-07-13
httr2-1.1.2/httr2/cleanup |only httr2-1.1.2/httr2/configure |only httr2-1.1.2/httr2/configure.win |only httr2-1.1.2/httr2/man/multi_req_perform.Rd |only httr2-1.1.2/httr2/tools |only httr2-1.2.0/httr2/DESCRIPTION | 15 httr2-1.2.0/httr2/MD5 | 310 +++++----- httr2-1.2.0/httr2/NAMESPACE | 20 httr2-1.2.0/httr2/NEWS.md | 68 ++ httr2-1.2.0/httr2/R/content-type.R | 25 httr2-1.2.0/httr2/R/curl.R | 31 - httr2-1.2.0/httr2/R/headers.R | 135 ++-- httr2-1.2.0/httr2/R/httr2-package.R | 1 httr2-1.2.0/httr2/R/iterate-helpers.R | 18 httr2-1.2.0/httr2/R/jwt.R | 18 httr2-1.2.0/httr2/R/last.R |only httr2-1.2.0/httr2/R/oauth-client.R | 62 +- httr2-1.2.0/httr2/R/oauth-flow-auth-code.R | 121 +-- httr2-1.2.0/httr2/R/oauth-flow-client-credentials.R | 22 httr2-1.2.0/httr2/R/oauth-flow-device.R | 78 +- httr2-1.2.0/httr2/R/oauth-flow-jwt.R | 34 - httr2-1.2.0/httr2/R/oauth-flow-password.R | 38 - httr2-1.2.0/httr2/R/oauth-flow-refresh.R | 26 httr2-1.2.0/httr2/R/oauth-flow-token-exchange.R | 46 - httr2-1.2.0/httr2/R/oauth-flow.R | 12 httr2-1.2.0/httr2/R/oauth-token.R | 29 httr2-1.2.0/httr2/R/oauth.R | 28 httr2-1.2.0/httr2/R/pooled-request.R | 28 httr2-1.2.0/httr2/R/req-auth-aws.R | 111 ++- httr2-1.2.0/httr2/R/req-auth-sign.R | 7 httr2-1.2.0/httr2/R/req-body.R | 278 +++++--- httr2-1.2.0/httr2/R/req-cache.R | 87 ++ httr2-1.2.0/httr2/R/req-dry-run.R | 24 httr2-1.2.0/httr2/R/req-error.R | 4 httr2-1.2.0/httr2/R/req-headers.R | 46 + httr2-1.2.0/httr2/R/req-method.R | 24 httr2-1.2.0/httr2/R/req-mock.R | 34 - httr2-1.2.0/httr2/R/req-options.R | 17 httr2-1.2.0/httr2/R/req-perform-connection.R | 116 +++ httr2-1.2.0/httr2/R/req-perform-iterative.R | 50 - httr2-1.2.0/httr2/R/req-perform-parallel.R | 108 +-- httr2-1.2.0/httr2/R/req-perform-sequential.R | 64 +- httr2-1.2.0/httr2/R/req-perform-stream.R | 73 +- httr2-1.2.0/httr2/R/req-perform.R | 63 -- httr2-1.2.0/httr2/R/req-progress.R | 10 httr2-1.2.0/httr2/R/req-promise.R | 28 httr2-1.2.0/httr2/R/req-retries.R | 41 - httr2-1.2.0/httr2/R/req-template.R | 28 httr2-1.2.0/httr2/R/req-throttle.R | 6 httr2-1.2.0/httr2/R/req-url.R | 28 httr2-1.2.0/httr2/R/req-verbose.R | 28 httr2-1.2.0/httr2/R/req.R | 38 - httr2-1.2.0/httr2/R/resp-body.R | 29 httr2-1.2.0/httr2/R/resp-headers.R | 11 httr2-1.2.0/httr2/R/resp-status.R | 4 httr2-1.2.0/httr2/R/resp-stream-aws.R | 11 httr2-1.2.0/httr2/R/resp-stream.R | 72 +- httr2-1.2.0/httr2/R/resp-timing.R |only httr2-1.2.0/httr2/R/resp-url.R | 3 httr2-1.2.0/httr2/R/resp.R | 150 +++- httr2-1.2.0/httr2/R/roxygen2.R | 21 httr2-1.2.0/httr2/R/secret.R | 20 httr2-1.2.0/httr2/R/test.R | 11 httr2-1.2.0/httr2/R/url.R | 153 ++-- httr2-1.2.0/httr2/R/utils-multi.R | 36 - httr2-1.2.0/httr2/R/utils-redacted.R |only httr2-1.2.0/httr2/R/utils.R | 126 ++-- httr2-1.2.0/httr2/README.md | 6 httr2-1.2.0/httr2/build/vignette.rds |binary httr2-1.2.0/httr2/inst/doc/httr2.Rmd | 2 httr2-1.2.0/httr2/inst/doc/httr2.html | 45 - httr2-1.2.0/httr2/man/StreamingBody.Rd |only httr2-1.2.0/httr2/man/last_response.Rd | 41 + httr2-1.2.0/httr2/man/new_response.Rd |only httr2-1.2.0/httr2/man/req_body.Rd | 11 httr2-1.2.0/httr2/man/req_get_body_type.Rd |only httr2-1.2.0/httr2/man/req_get_headers.Rd |only httr2-1.2.0/httr2/man/req_get_method.Rd |only httr2-1.2.0/httr2/man/req_get_url.Rd |only httr2-1.2.0/httr2/man/req_oauth_auth_code.Rd | 13 httr2-1.2.0/httr2/man/req_oauth_device.Rd | 6 httr2-1.2.0/httr2/man/req_perform.Rd | 4 httr2-1.2.0/httr2/man/req_perform_connection.Rd | 12 httr2-1.2.0/httr2/man/req_perform_iterative.Rd | 6 httr2-1.2.0/httr2/man/req_perform_parallel.Rd | 12 httr2-1.2.0/httr2/man/req_perform_promise.Rd | 16 httr2-1.2.0/httr2/man/req_perform_sequential.Rd | 6 httr2-1.2.0/httr2/man/req_perform_stream.Rd | 19 httr2-1.2.0/httr2/man/resp_status.Rd | 2 httr2-1.2.0/httr2/man/resp_timing.Rd |only httr2-1.2.0/httr2/man/resp_url.Rd | 3 httr2-1.2.0/httr2/man/response.Rd | 25 httr2-1.2.0/httr2/man/with_mocked_responses.Rd | 12 httr2-1.2.0/httr2/tests/testthat/_snaps/curl.md | 62 +- httr2-1.2.0/httr2/tests/testthat/_snaps/headers.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/last.md |only httr2-1.2.0/httr2/tests/testthat/_snaps/oauth-client.md | 6 httr2-1.2.0/httr2/tests/testthat/_snaps/oauth-flow-auth-code.md | 26 httr2-1.2.0/httr2/tests/testthat/_snaps/oauth-token.md | 4 httr2-1.2.0/httr2/tests/testthat/_snaps/req-auth-aws.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/req-body.md | 42 + httr2-1.2.0/httr2/tests/testthat/_snaps/req-dry-run.md | 12 httr2-1.2.0/httr2/tests/testthat/_snaps/req-error.md | 27 httr2-1.2.0/httr2/tests/testthat/_snaps/req-headers.md | 2 httr2-1.2.0/httr2/tests/testthat/_snaps/req-mock.md | 17 httr2-1.2.0/httr2/tests/testthat/_snaps/req-options.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/req-perform-connection.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/req-perform-parallel.md | 21 httr2-1.2.0/httr2/tests/testthat/_snaps/req-perform-stream.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/req-perform.md | 2 httr2-1.2.0/httr2/tests/testthat/_snaps/req-url.md | 8 httr2-1.2.0/httr2/tests/testthat/_snaps/req.md | 18 httr2-1.2.0/httr2/tests/testthat/_snaps/resp-body.md | 4 httr2-1.2.0/httr2/tests/testthat/_snaps/resp.md | 52 + httr2-1.2.0/httr2/tests/testthat/_snaps/url.md | 21 httr2-1.2.0/httr2/tests/testthat/_snaps/utils-redacted.md |only httr2-1.2.0/httr2/tests/testthat/helper-sync.R | 18 httr2-1.2.0/httr2/tests/testthat/helper.R | 2 httr2-1.2.0/httr2/tests/testthat/test-content-type.R | 22 httr2-1.2.0/httr2/tests/testthat/test-curl.R | 46 + httr2-1.2.0/httr2/tests/testthat/test-headers.R | 64 +- httr2-1.2.0/httr2/tests/testthat/test-last.R |only httr2-1.2.0/httr2/tests/testthat/test-oauth-client.R | 25 httr2-1.2.0/httr2/tests/testthat/test-oauth-flow-auth-code.R | 29 httr2-1.2.0/httr2/tests/testthat/test-oauth-flow-jwt.R | 18 httr2-1.2.0/httr2/tests/testthat/test-oauth-flow-refresh.R | 4 httr2-1.2.0/httr2/tests/testthat/test-oauth-flow.R | 5 httr2-1.2.0/httr2/tests/testthat/test-oauth.R | 5 httr2-1.2.0/httr2/tests/testthat/test-parse.R | 4 httr2-1.2.0/httr2/tests/testthat/test-req-auth-aws.R | 33 - httr2-1.2.0/httr2/tests/testthat/test-req-auth.R | 6 httr2-1.2.0/httr2/tests/testthat/test-req-body.R | 216 ++++-- httr2-1.2.0/httr2/tests/testthat/test-req-cache.R | 78 +- httr2-1.2.0/httr2/tests/testthat/test-req-cookies.R | 24 httr2-1.2.0/httr2/tests/testthat/test-req-dry-run.R | 12 httr2-1.2.0/httr2/tests/testthat/test-req-error.R | 28 httr2-1.2.0/httr2/tests/testthat/test-req-headers.R | 52 + httr2-1.2.0/httr2/tests/testthat/test-req-method.R | 6 httr2-1.2.0/httr2/tests/testthat/test-req-mock.R | 24 httr2-1.2.0/httr2/tests/testthat/test-req-options.R | 20 httr2-1.2.0/httr2/tests/testthat/test-req-perform-connection.R | 45 + httr2-1.2.0/httr2/tests/testthat/test-req-perform-iterative.R | 56 + httr2-1.2.0/httr2/tests/testthat/test-req-perform-parallel.R | 91 +- httr2-1.2.0/httr2/tests/testthat/test-req-perform-sequential.R | 17 httr2-1.2.0/httr2/tests/testthat/test-req-perform-stream.R | 35 - httr2-1.2.0/httr2/tests/testthat/test-req-perform.R | 104 ++- httr2-1.2.0/httr2/tests/testthat/test-req-promise.R | 53 + httr2-1.2.0/httr2/tests/testthat/test-req-retries.R | 41 - httr2-1.2.0/httr2/tests/testthat/test-req-template.R | 10 httr2-1.2.0/httr2/tests/testthat/test-req-throttle.R | 10 httr2-1.2.0/httr2/tests/testthat/test-req-url.R | 108 ++- httr2-1.2.0/httr2/tests/testthat/test-req-verbose.R | 56 + httr2-1.2.0/httr2/tests/testthat/test-req.R | 12 httr2-1.2.0/httr2/tests/testthat/test-resp-body.R | 31 - httr2-1.2.0/httr2/tests/testthat/test-resp-headers.R | 36 - httr2-1.2.0/httr2/tests/testthat/test-resp-status.R | 10 httr2-1.2.0/httr2/tests/testthat/test-resp-stream-aws.R | 28 httr2-1.2.0/httr2/tests/testthat/test-resp-stream.R | 39 - httr2-1.2.0/httr2/tests/testthat/test-resp-timing.R |only httr2-1.2.0/httr2/tests/testthat/test-resp-url.R | 3 httr2-1.2.0/httr2/tests/testthat/test-resp.R | 20 httr2-1.2.0/httr2/tests/testthat/test-secret.R | 13 httr2-1.2.0/httr2/tests/testthat/test-url.R | 47 - httr2-1.2.0/httr2/tests/testthat/test-utils-multi.R | 19 httr2-1.2.0/httr2/tests/testthat/test-utils-redacted.R |only httr2-1.2.0/httr2/vignettes/httr2.Rmd | 2 166 files changed, 3326 insertions(+), 2031 deletions(-)
Title: Distribution Function of Quadratic Forms in Normal Variables
Description: Computes the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.
Author: Pierre Lafaye De Micheaux [aut, cre],
Pierre Duchesne [aut],
Robert B. Davies [aut],
R. W. Farebrother [aut],
J. Sheil [aut],
I. O Muircheartaigh [aut]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between CompQuadForm versions 1.4.3 dated 2017-04-12 and 1.4.4 dated 2025-07-13
DESCRIPTION | 26 +++++--- MD5 | 12 +-- TODO | 186 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ inst/CITATION | 7 +- inst/HISTORY | 8 ++ src/qfc.cpp | 4 + src/ruben.cpp | 13 +++- 7 files changed, 237 insertions(+), 19 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.18.0 dated 2025-05-27 and 0.19.0 dated 2025-07-13
DESCRIPTION | 6 MD5 | 82 +- NAMESPACE | 1 R/adbc.R | 7 R/driver_void.R | 88 ++ R/utils.R | 26 man/adbc_driver_load.Rd |only man/adbc_driver_void.Rd | 10 man/adbc_load_flags.Rd |only src/Makevars | 2 src/Makevars.win |only src/c/driver/common/utils.c | 80 +- src/c/driver/common/utils.h | 94 +- src/c/driver/postgresql/bind_stream.h | 2 src/c/driver/postgresql/connection.cc | 67 + src/c/driver/postgresql/copy/postgres_copy_test_common.h | 23 src/c/driver/postgresql/copy/reader.h | 25 src/c/driver/postgresql/copy/writer.h | 6 src/c/driver/postgresql/database.cc | 22 src/c/driver/postgresql/database.h | 7 src/c/driver/postgresql/postgres_type.h | 18 src/c/driver/postgresql/postgresql.cc | 28 src/c/driver/postgresql/result_helper.h | 2 src/c/driver/postgresql/statement.cc | 101 +- src/c/driver/sqlite/sqlite.cc | 39 - src/c/driver/sqlite/statement_reader.c | 290 ++++--- src/c/driver/sqlite/statement_reader.h | 23 src/c/driver_manager/adbc_driver_manager.cc | 547 ++++++++++++++- src/c/driver_manager/current_arch.h |only src/c/include/arrow-adbc/adbc.h | 14 src/c/include/arrow-adbc/adbc_driver_manager.h | 78 ++ src/c/include/arrow-adbc/driver |only src/c/integration |only src/c/validation/adbc_validation_connection.cc | 16 src/c/validation/adbc_validation_util.cc | 2 src/c/validation/adbc_validation_util.h | 4 src/c/vendor/toml++ |only src/driver_test.cc | 23 src/init.c | 18 src/options.cc | 6 src/radbc.cc | 92 +- tests/testthat/test-driver_void.R | 63 + tests/testthat/test-radbc.R | 2 43 files changed, 1413 insertions(+), 501 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.18.0 dated 2025-05-27 and 0.19.0 dated 2025-07-13
DESCRIPTION | 6 MD5 | 61 - cleanup | 1 configure | 3 src/c/driver/common/utils.c | 80 +- src/c/driver/common/utils.h | 94 +- src/c/driver/postgresql/bind_stream.h | 2 src/c/driver/postgresql/connection.cc | 67 + src/c/driver/postgresql/copy/postgres_copy_test_common.h | 23 src/c/driver/postgresql/copy/reader.h | 25 src/c/driver/postgresql/copy/writer.h | 6 src/c/driver/postgresql/database.cc | 22 src/c/driver/postgresql/database.h | 7 src/c/driver/postgresql/postgres_type.h | 18 src/c/driver/postgresql/postgresql.cc | 28 src/c/driver/postgresql/result_helper.h | 2 src/c/driver/postgresql/statement.cc | 101 +- src/c/driver/sqlite/sqlite.cc | 39 - src/c/driver/sqlite/statement_reader.c | 290 ++++--- src/c/driver/sqlite/statement_reader.h | 23 src/c/driver_manager/adbc_driver_manager.cc | 547 ++++++++++++++- src/c/driver_manager/current_arch.h |only src/c/include/arrow-adbc/adbc.h | 14 src/c/include/arrow-adbc/adbc_driver_manager.h | 78 ++ src/c/include/arrow-adbc/driver |only src/c/integration |only src/c/validation/adbc_validation_connection.cc | 16 src/c/validation/adbc_validation_util.cc | 2 src/c/validation/adbc_validation_util.h | 4 src/c/vendor/toml++ |only src/init.cc | 5 31 files changed, 1122 insertions(+), 442 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.18.0 dated 2025-05-27 and 0.19.0 dated 2025-07-13
DESCRIPTION | 6 MD5 | 55 - src/c/driver/common/utils.c | 80 +- src/c/driver/common/utils.h | 94 +- src/c/driver/postgresql/bind_stream.h | 2 src/c/driver/postgresql/connection.cc | 67 + src/c/driver/postgresql/copy/postgres_copy_test_common.h | 23 src/c/driver/postgresql/copy/reader.h | 25 src/c/driver/postgresql/copy/writer.h | 6 src/c/driver/postgresql/database.cc | 22 src/c/driver/postgresql/database.h | 7 src/c/driver/postgresql/postgres_type.h | 18 src/c/driver/postgresql/postgresql.cc | 28 src/c/driver/postgresql/result_helper.h | 2 src/c/driver/postgresql/statement.cc | 101 +- src/c/driver/sqlite/sqlite.cc | 39 - src/c/driver/sqlite/statement_reader.c | 290 ++++--- src/c/driver/sqlite/statement_reader.h | 23 src/c/driver_manager/adbc_driver_manager.cc | 547 ++++++++++++++- src/c/driver_manager/current_arch.h |only src/c/include/arrow-adbc/adbc.h | 14 src/c/include/arrow-adbc/adbc_driver_manager.h | 78 ++ src/c/include/arrow-adbc/driver |only src/c/integration |only src/c/validation/adbc_validation_connection.cc | 16 src/c/validation/adbc_validation_util.cc | 2 src/c/validation/adbc_validation_util.h | 4 src/c/vendor/toml++ |only 28 files changed, 1114 insertions(+), 435 deletions(-)
More information about adbcpostgresql at CRAN
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