Title: Parametric Bootstrap, Kenward-Roger and Satterthwaite Based
Methods for Test in Mixed Models
Description: Computes p-values based on (a) Satterthwaite or
Kenward-Rogers degree of freedom methods and (b) parametric bootstrap
for mixed effects models as implemented in the 'lme4'
package. Implements parametric bootstrap test for generalized linear
mixed models as implemented in 'lme4' and generalized linear
models. The package is documented in the paper by Halekoh and
Højsgaard, (2012, <doi:10.18637/jss.v059.i09>). Please see
'citation("pbkrtest")' for citation details.
Author: Ulrich Halekoh [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between pbkrtest versions 0.5.4 dated 2025-04-28 and 0.5.5 dated 2025-07-17
pbkrtest-0.5.4/pbkrtest/R/PB_utils.R |only pbkrtest-0.5.4/pbkrtest/R/data_beets.R |only pbkrtest-0.5.4/pbkrtest/R/data_budworm.R |only pbkrtest-0.5.4/pbkrtest/R/do_modcomp.R |only pbkrtest-0.5.4/pbkrtest/R/getKR.R |only pbkrtest-0.5.4/pbkrtest/R/get_ddf_Lb.R |only pbkrtest-0.5.4/pbkrtest/R/handle_models.r |only pbkrtest-0.5.4/pbkrtest/R/internal_pbkrtest.R |only pbkrtest-0.5.4/pbkrtest/R/utilities.R |only pbkrtest-0.5.4/pbkrtest/man/comodex.Rd |only pbkrtest-0.5.4/pbkrtest/man/internal.Rd |only pbkrtest-0.5.5/pbkrtest/DESCRIPTION | 8 pbkrtest-0.5.5/pbkrtest/MD5 | 68 ++--- pbkrtest-0.5.5/pbkrtest/NAMESPACE | 8 pbkrtest-0.5.5/pbkrtest/NEWS | 7 pbkrtest-0.5.5/pbkrtest/R/DATA_pbkrtest.R |only pbkrtest-0.5.5/pbkrtest/R/KR_utils.R | 1 pbkrtest-0.5.5/pbkrtest/R/KR_vcovAdj.R | 218 +++-------------- pbkrtest-0.5.5/pbkrtest/R/NAMESPACE_pbkrtest.R | 1 pbkrtest-0.5.5/pbkrtest/R/PB_modcomp.R | 188 +++++++------- pbkrtest-0.5.5/pbkrtest/R/PB_refdist.R | 241 +++++++++---------- pbkrtest-0.5.5/pbkrtest/R/X2_modcomp.R | 164 +++++++++--- pbkrtest-0.5.5/pbkrtest/R/get_info_functions.R |only pbkrtest-0.5.5/pbkrtest/R/linear_algebra.R |only pbkrtest-0.5.5/pbkrtest/R/model_coerce.R | 153 ++---------- pbkrtest-0.5.5/pbkrtest/R/nested_model_info.R |only pbkrtest-0.5.5/pbkrtest/R/pbkr_utilities.R |only pbkrtest-0.5.5/pbkrtest/R/xx_modcomp_new.R | 75 +++-- pbkrtest-0.5.5/pbkrtest/build/vignette.rds |binary pbkrtest-0.5.5/pbkrtest/inst/doc/a01-pbkrtest.R | 3 pbkrtest-0.5.5/pbkrtest/inst/doc/a01-pbkrtest.html | 28 +- pbkrtest-0.5.5/pbkrtest/inst/doc/a01-pbkrtest.rmd | 5 pbkrtest-0.5.5/pbkrtest/inst/doc/a02-coercion.html | 12 pbkrtest-0.5.5/pbkrtest/man/compare_column_space.Rd | 2 pbkrtest-0.5.5/pbkrtest/man/data-beets.Rd | 2 pbkrtest-0.5.5/pbkrtest/man/data-budworm.Rd | 2 pbkrtest-0.5.5/pbkrtest/man/getLRT.Rd |only pbkrtest-0.5.5/pbkrtest/man/get_ddf_Lb.Rd | 23 - pbkrtest-0.5.5/pbkrtest/man/get_modcomp.Rd | 31 +- pbkrtest-0.5.5/pbkrtest/man/get_nested_model_info.Rd |only pbkrtest-0.5.5/pbkrtest/man/kr-vcovAdj.Rd | 33 +- pbkrtest-0.5.5/pbkrtest/man/pb__modcomp.Rd | 12 pbkrtest-0.5.5/pbkrtest/man/x2__modcomp.Rd | 5 pbkrtest-0.5.5/pbkrtest/vignettes/a01-pbkrtest.rmd | 5 44 files changed, 592 insertions(+), 703 deletions(-)
Title: R Wrapper for 'Firebase Authentication REST API'
Description: A convenient and user-friendly interface to
interact with the 'Firebase Authentication REST API': <https://firebase.google.com/docs/reference/rest/auth>.
It enables R developers to integrate 'Firebase Authentication' services
seamlessly into their projects, allowing for user authentication, account
management, and other authentication-related tasks.
Author: Kennedy Mwavu [aut, cre, cph]
Maintainer: Kennedy Mwavu <mwavukennedy@gmail.com>
Diff between firebase.auth.rest versions 1.0.0 dated 2025-03-20 and 1.0.1 dated 2025-07-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 9 ++++++++- R/perform_req.R | 9 ++------- README.md | 6 ++++++ 5 files changed, 24 insertions(+), 16 deletions(-)
More information about firebase.auth.rest at CRAN
Permanent link
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gabriel Staples [ctb],
Gerhard W [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 4.0.0 dated 2025-07-16 and 4.0.1 dated 2025-07-17
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NEWS.md | 6 ++++++ R/rbind.R |only R/rxode2_md5.R | 2 +- inst/doc/rxode2-syntax.html | 26 +++++++++++++------------- inst/include/rxode2parseVer.h | 4 ++-- src/init.c | 4 ++-- tests/testthat/test-rbind.R |only 9 files changed, 35 insertions(+), 27 deletions(-)
Title: Standardizing Physiological Composite Risk Endpoints
Description: Provides a number of functions to
simplify and automate the scoring, comparison, and evaluation of
different ways of creating composites of data. It is particularly
aimed at facilitating the creation of physiological composites of
metabolic syndrome symptom score (MetSSS) and allostatic load (AL).
Provides a wrapper to calculate the MetSSS on new data using the
Healthy Hearts formula.
Author: Joshua F. Wiley [aut, cre]
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between pscore versions 0.4.0 dated 2022-05-13 and 0.4.1 dated 2025-07-17
DESCRIPTION | 11 MD5 | 24 NEWS | 7 R/MetSSS.R | 98 +-- R/MetSSS_model.R | 18 R/misc.R | 6 R/onLoad.R | 10 build/vignette.rds |binary inst/doc/metsss.R | 84 +- inst/doc/metsss.Rmd | 370 +++++------ inst/doc/metsss.html | 1333 ++++++++++++++++++++--------------------- inst/extdata/sample_metsss.csv | 12 vignettes/metsss.Rmd | 370 +++++------ 13 files changed, 1178 insertions(+), 1165 deletions(-)
Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis,
statistical modeling (including direct, model-assisted, photo-based, and
small area tools), and USDA Forest Service data base tools. These tools are
aimed to help Foresters, Analysts, and Scientists extract and perform
analyses on USDA Forest Service data.
Author: Tracey Frescino [aut],
Chris Toney [aut],
Grayson White [aut, cre],
Joshua Yamamoto [aut]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTAutils versions 1.3.1 dated 2025-03-25 and 1.3.2 dated 2025-07-17
DESCRIPTION | 8 MD5 | 252 +- NAMESPACE | 449 ++-- NEWS.md | 70 R/DBinternal.R | 4496 +++++++++++++++++++++---------------------- R/DBtestPostgreSQL.R | 140 - R/DBtestSQLite.R | 220 +- R/FIESTAutils-package.R | 740 +++---- R/GBest.pbar.R | 256 +- R/MAest.pbar.R | 1605 +++++++-------- R/PBest_pbar.R | 182 - R/PBest_pbarRatio.R | 290 +- R/Ratio2SizeWF.R | 474 ++-- R/RcppExports.R | 14 R/SAest.pbar.R | 2582 ++++++++++++------------ R/aaa.R | 10 R/addCI.R | 110 - R/change10char.R | 64 R/check.pltcnt.R | 346 +-- R/checks.R | 1546 +++++++------- R/checks_desc.R | 48 R/cool_functions.R | 1588 +++++++-------- R/cool_spfunctions.R | 444 ++-- R/datExportData.R | 386 +-- R/datSum_options.R | 144 - R/database_options.R | 96 R/estimation_desc.R | 46 R/eval_options.R | 187 - R/fileexistsnm.R | 26 R/getEvalid.R | 1000 ++++----- R/getRefcodes.R | 82 R/getRefobject.R | 84 R/getadjfactorDWM.R | 358 +-- R/getadjfactorGB.R | 470 ++-- R/getadjfactorP2VEG.R | 354 +-- R/getadjfactorPLOT.R | 310 +- R/getadjfactorVOL.R | 612 ++--- R/getfunnm.R | 42 R/getlt10char.R | 192 - R/getpse.R | 210 +- R/getrhat.R | 128 - R/groupClasses.R | 216 +- R/groupStrata.R | 250 +- R/groupUnits.R | 151 - R/internal_desc.R | 46 R/multest_options.R | 114 - R/pcheck.functions.R | 3882 ++++++++++++++++++------------------- R/pcheck_desc.R | 42 R/popFilters.R | 132 - R/popTabchk.R | 144 - R/popTableIDs.R | 170 - R/popTables.R | 254 +- R/query_functions.R | 392 +-- R/raster_analysis.R | 3208 +++++++++++++++--------------- R/raster_desc.R | 40 R/raster_functions.R | 556 ++--- R/re_exports.R | 10 R/save1tab.R | 226 +- R/save2tabs.R | 154 - R/savedata_options.R | 156 - R/setup_list_parameters.R | 208 - R/spMakeSpatial_options.R | 94 R/spatial_desc.R | 40 R/spatial_functions.R | 1645 +++++++-------- R/strat_collapse.R | 396 +-- R/strata_options.R | 112 - R/subpsamp.R | 186 - R/subpsampP2VEG.R | 178 - R/tableIDs.R | 96 R/table_functions.R | 1682 ++++++++-------- R/table_options.R | 232 +- R/title_options.R | 120 - R/unit_options.R | 102 R/update_refs.R | 474 ++-- R/vector_proc.R | 550 ++--- R/write2_desc.R | 38 R/write2csv.R | 200 - R/write2postgresql.R | 246 +- R/write2sqlite.R | 324 +-- R/wtcalc.R | 20 R/wtcalc_unit.R | 22 R/xy_options.R | 92 R/zzz.R | 18 README.md | 66 data/ref_codes.rda |binary data/ref_domain.rda |binary data/ref_estvar.rda |binary data/ref_titles.rda |binary inst/COPYRIGHTS | 6 man/DBtestPostgreSQL.Rd | 92 man/DBtestSQLite.Rd | 100 man/GDT_NAMES.Rd | 32 man/checks_desc.Rd | 166 - man/datExportData.Rd | 120 - man/dot-update_refs.Rd | 40 man/estimation_desc.Rd | 604 ++--- man/eval_options.Rd | 170 - man/internal_desc.Rd | 1793 ++++++++--------- man/kindcd3old.Rd | 50 man/multest_options.Rd | 124 - man/pcheck_desc.Rd | 340 +-- man/raster_desc.Rd | 588 ++--- man/reexports.Rd | 32 man/ref_codes.Rd | 50 man/ref_codes_archive.Rd | 50 man/ref_cond.Rd | 54 man/ref_conversion.Rd | 32 man/ref_diacl2in.Rd | 48 man/ref_domain.Rd | 34 man/ref_estvar.Rd | 28 man/ref_plt.Rd | 54 man/ref_popType.Rd | 32 man/ref_shp.Rd | 56 man/ref_species.Rd | 56 man/ref_statecd.Rd | 50 man/ref_titles.Rd | 32 man/ref_tree.Rd | 54 man/savedata_options.Rd | 184 - man/spMakeSpatial_options.Rd | 124 - man/spatial_desc.Rd | 212 +- man/strata_options.Rd | 116 - man/stunitco.Rd | 74 man/table_options.Rd | 304 +- man/title_options.Rd | 144 - man/unit_options.Rd | 110 - man/write2_desc.Rd | 138 - man/xy_options.Rd | 94 127 files changed, 22294 insertions(+), 22038 deletions(-)
Title: Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Description: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. Outputs a table with compound names, matching scores and the integrated area of the compound for each sample. Package implementation is described in Domingo-Almenara et al. (2016) <doi:10.1021/acs.analchem.6b02927>.
Author: Xavier Domingo-Almenara [aut, cre, cph],
Jasen P. Finch [ctb],
Adria Olomi [ctb],
Sara Samino [aut],
Maria Vinaixa [aut],
Alexandre Perera [aut, ths],
Jesus Brezmes [aut, ths],
Oscar Yanes [aut, ths]
Maintainer: Xavier Domingo-Almenara <xavier.domingo@urv.cat>
Diff between erah versions 2.0.1 dated 2023-12-20 and 2.2.0 dated 2025-07-17
erah-2.0.1/erah/R/reexports.R |only erah-2.0.1/erah/man/reexports.Rd |only erah-2.0.1/erah/src/registerDynamicSymbol.c |only erah-2.0.1/erah/src/runfunc.c |only erah-2.2.0/erah/DESCRIPTION | 57 +++++++-- erah-2.2.0/erah/MD5 | 29 ++-- erah-2.2.0/erah/NAMESPACE | 9 - erah-2.2.0/erah/R/RI.R | 3 erah-2.2.0/erah/R/RcppExports.R |only erah-2.2.0/erah/R/alignment.R | 167 ++++++++++++++++++++++++---- erah-2.2.0/erah/R/support.R | 59 ++++++--- erah-2.2.0/erah/R/zzz.R | 2 erah-2.2.0/erah/build/vignette.rds |binary erah-2.2.0/erah/inst/NEWS | 4 erah-2.2.0/erah/inst/doc/erah-manual.Rmd | 4 erah-2.2.0/erah/inst/doc/erah-manual.html | 8 - erah-2.2.0/erah/src/RcppExports.cpp |only erah-2.2.0/erah/src/cfunctions.cpp |only erah-2.2.0/erah/vignettes/erah-manual.Rmd | 4 19 files changed, 263 insertions(+), 83 deletions(-)
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.3.1 dated 2025-07-03 and 0.3.2 dated 2025-07-17
DESCRIPTION | 8 MD5 | 28 NEWS.md | 5 R/controls.R | 56 + R/layers.R | 1665 +++++++++++++++---------------- R/sources.R | 5 R/terrain.R | 159 ++ inst/htmlwidgets/mapboxgl.js | 248 +++- inst/htmlwidgets/mapboxgl_compare.js | 158 ++ inst/htmlwidgets/maplibregl.js | 426 ++++++- inst/htmlwidgets/maplibregl.yaml | 8 inst/htmlwidgets/maplibregl_compare.js | 521 +++++++-- inst/htmlwidgets/maplibregl_compare.yaml | 8 man/add_draw_control.Rd | 6 man/add_geocoder_control.Rd | 10 15 files changed, 2159 insertions(+), 1152 deletions(-)
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MOVE, DELETE and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.1.5 dated 2025-05-20 and 0.1.6 dated 2025-07-17
DESCRIPTION | 14 +-- MD5 | 25 +++---- NAMESPACE | 4 - NEWS.md | 16 ++++ R/webdav.R | 146 ++++++++++++++++++----------------------- R/zzz.R |only inst/doc/env_variables.html | 4 - inst/doc/webdav.html | 4 - man/webdav_create_directory.Rd | 9 +- man/webdav_create_request.Rd | 9 +- man/webdav_delete_resource.Rd | 9 +- man/webdav_download_file.Rd | 9 +- man/webdav_list_files.Rd | 19 ++--- man/webdav_upload_file.Rd | 9 +- 14 files changed, 139 insertions(+), 138 deletions(-)
Title: Connecting R and 'Raven' Sound Analysis Software
Description: A tool to exchange data between R and 'Raven' sound analysis software (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
Author: Marcelo Araya-Salas [aut, cre]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between Rraven versions 1.0.14 dated 2024-08-19 and 1.0.15 dated 2025-07-17
DESCRIPTION | 12 - MD5 | 38 ++--- NEWS.md | 12 + R/exp_est.R | 9 - R/exp_raven.R | 4 R/raven_batch_detec.R | 3 R/relabel_colms.R | 4 R/run_raven.R | 3 R/selection_files.R | 2 build/vignette.rds |binary data/selection_files.rda |binary inst/doc/Rraven.R | 343 +++++++++++++++++++++++------------------------ inst/doc/Rraven.Rmd | 22 ++- inst/doc/Rraven.html | 88 +++++++----- man/exp_est.Rd | 8 - man/exp_raven.Rd | 4 man/raven_batch_detec.Rd | 2 man/run_raven.Rd | 2 man/selection_files.Rd | 2 vignettes/Rraven.Rmd | 22 ++- 20 files changed, 314 insertions(+), 266 deletions(-)
Title: Estimating Bivariate Dependency from Marginal Data
Description: Provides maximum likelihood methods to estimate bivariate dependency (correlation) from marginal summary statistics in multi-study settings.
The package supports both binary and continuous variables assumed to follow a bivariate normal distribution,
enabling privacy-preserving joint estimation when individual-level data are unavailable.
The binary method is fully described in the manuscript by Shang, Tsao and Zhang (2025)
<doi:10.48550/arXiv.2505.03995>: "Estimating the Joint Distribution of Two Binary Variables from Their Marginal Summaries".
Author: Longwen Shang [aut, cre],
Min Tsao [aut],
Xuekui Zhang [aut]
Maintainer: Longwen Shang <shanglongwen0918@gmail.com>
Diff between ebdm versions 1.0.0 dated 2025-06-05 and 1.1.0 dated 2025-07-17
ebdm-1.0.0/ebdm/R/ebdm.R |only ebdm-1.0.0/ebdm/R/eg_data.R |only ebdm-1.0.0/ebdm/data/eg_data.rda |only ebdm-1.0.0/ebdm/man/ebdm_estimate.Rd |only ebdm-1.0.0/ebdm/man/eg_data.Rd |only ebdm-1.1.0/ebdm/DESCRIPTION | 16 ++++++++-------- ebdm-1.1.0/ebdm/MD5 | 19 ++++++++++++------- ebdm-1.1.0/ebdm/NAMESPACE | 3 ++- ebdm-1.1.0/ebdm/R/bin_example.R |only ebdm-1.1.0/ebdm/R/cont_example.R |only ebdm-1.1.0/ebdm/R/cor_bin.R |only ebdm-1.1.0/ebdm/R/cor_cont.R |only ebdm-1.1.0/ebdm/data/bin_example.rda |only ebdm-1.1.0/ebdm/data/cont_example.rda |only ebdm-1.1.0/ebdm/man/bin_example.Rd |only ebdm-1.1.0/ebdm/man/cont_example.Rd |only ebdm-1.1.0/ebdm/man/cor_bin.Rd |only ebdm-1.1.0/ebdm/man/cor_cont.Rd |only 18 files changed, 22 insertions(+), 16 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.10.1 dated 2025-06-23 and 0.10.2 dated 2025-07-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/sv_interaction.R | 4 ++++ inst/doc/basic_use.html | 2 +- 5 files changed, 18 insertions(+), 8 deletions(-)
Title: Monitoring Overall Survival in Pivotal Trials in Indolent
Cancers
Description: These guidelines are meant to provide a pragmatic, yet rigorous, help to drug developers and decision makers, since they are shaped by three fundamental ingredients: the clinically determined margin of detriment on OS that is unacceptably high (delta null); the benefit on OS that is plausible given the mechanism of action of the novel intervention (delta alt); and the quantity of information (i.e. survival events) it is feasible to accrue given the clinical and drug development setting. The proposed guidelines facilitate transparent discussions between stakeholders focusing on the risks of erroneous decisions and what might be an acceptable trade-off between power and the false positive error rate.
Author: Thomas Fleming [ctb],
Lisa Hampson [aut],
Bharani Bharani-Dharan [ctb],
Frank Bretz [ctb],
Arunava Chakravartty [ctb],
Thibaud Coroller [aut, cre],
Evanthia Koukouli [aut],
Janet Wittes [ctb],
Nigel Yateman [ctb],
Emmanuel Zuber [ctb],
Novartis Pharm [...truncated...]
Maintainer: Thibaud Coroller <thibaud.coroller@novartis.com>
Diff between monitOS versions 0.1.5 dated 2024-03-21 and 0.1.6 dated 2025-07-17
monitOS-0.1.5/monitOS/build |only monitOS-0.1.5/monitOS/inst |only monitOS-0.1.5/monitOS/vignettes |only monitOS-0.1.6/monitOS/DESCRIPTION | 20 - monitOS-0.1.6/monitOS/LICENSE |only monitOS-0.1.6/monitOS/MD5 | 40 +-- monitOS-0.1.6/monitOS/NAMESPACE | 4 monitOS-0.1.6/monitOS/NEWS.md | 9 monitOS-0.1.6/monitOS/R/bounds.R | 97 +++++--- monitOS-0.1.6/monitOS/R/get_pos.R |only monitOS-0.1.6/monitOS/R/posteriors.R | 37 ++- monitOS-0.1.6/monitOS/R/probs.R | 20 - monitOS-0.1.6/monitOS/R/server.R | 6 monitOS-0.1.6/monitOS/R/ui.R | 233 ++++++++++++++++---- monitOS-0.1.6/monitOS/README.md | 48 +--- monitOS-0.1.6/monitOS/man/bounds.Rd | 31 +- monitOS-0.1.6/monitOS/man/calc_posterior.Rd | 14 - monitOS-0.1.6/monitOS/man/calc_predictive.Rd | 7 monitOS-0.1.6/monitOS/man/figures |only monitOS-0.1.6/monitOS/man/find_pos.Rd |only monitOS-0.1.6/monitOS/man/meeting_probs.Rd | 6 monitOS-0.1.6/monitOS/tests/testthat/test-bounds.R | 118 ++++++---- monitOS-0.1.6/monitOS/tests/testthat/test_get_pos.R |only 23 files changed, 462 insertions(+), 228 deletions(-)
Title: Modify and Share Images
Description: Tools for manipulating, visualizing, and exporting raster images in R.
Designed as an educational resource for students learning the basics of remote sensing,
the package provides user-friendly functions to apply color ramps, export RGB composites,
and create multi-frame visualizations. Built on top of the 'terra' and 'ggplot2' packages.
See <https://github.com/ducciorocchini/imageRy> for more details and examples.
Author: Duccio Rocchini [aut],
Ludovico Chieffallo [aut, cre],
Giovanni Andrea Nocera [ctb],
Giacomo Panza [ctb],
Michele Torresani [aut],
Elisa Thouverai [aut]
Maintainer: Ludovico Chieffallo <ludovico.chieffallo2@unibo.it>
Diff between imageRy versions 0.2.0 dated 2025-07-08 and 0.3.0 dated 2025-07-17
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/im.classify.R | 20 +++++++------- R/im.import.R | 77 ++++++++++++++++++++++++++++++++----------------------- R/im.list.R | 6 ++-- man/im.import.Rd | 7 ++--- 6 files changed, 70 insertions(+), 56 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Edouard F. Bonneville [aut],
Lars van der Burg [aut],
Claus Thorn Ekstroem [ctb]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between smcfcs versions 2.0.0 dated 2025-03-25 and 2.0.1 dated 2025-07-17
DESCRIPTION | 6 +-- MD5 | 23 ++++++------ R/smcfcs.r | 32 +++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/coarsening.html | 6 +-- inst/doc/coverror.html | 12 +++--- inst/doc/smcfcs-vignette.html | 70 +++++++++++++++++--------------------- tests/testthat/test_biasreduced.r | 31 ---------------- tests/testthat/test_dtsam.r | 46 ++++++++++++------------ tests/testthat/test_flexsurv.r | 36 ++++++------------- tests/testthat/test_mlogit.r |only tests/testthat/test_parallel.r | 4 +- 13 files changed, 108 insertions(+), 158 deletions(-)
Title: Robust Multi-Model Subset Selection
Description: Efficient algorithms for generating ensembles of robust, sparse and diverse models via robust
multi-model subset selection (RMSS). The robust ensembles are generated by minimizing the sum of
the least trimmed square loss of the models in the ensembles under constraints for the size of
the models and the sharing of the predictors. Tuning parameters for the robustness, sparsity and
diversity of the robust ensemble are selected by cross-validation.
Author: Anthony Christidis [aut, cre],
Gabriela Cohen-Freue [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between RMSS versions 1.1.2 dated 2024-12-19 and 1.2.0 dated 2025-07-17
DESCRIPTION | 8 - MD5 | 16 +- NEWS | 5 src/Array2Cube.cpp | 19 ++- src/EnsembleModel.cpp | 238 +++++++++++++++++++++++++++++++--------- src/EnsembleModel.hpp | 35 ++++- src/Generate3D.cpp | 26 +--- src/NeighborhoodSearch.cpp | 265 ++++++++++++++++++--------------------------- src/RInterfaceCV.cpp | 41 +++--- 9 files changed, 377 insertions(+), 276 deletions(-)
Title: Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting
Results
Description: This allows you to generate reporting workflows around 'nlmixr2' analyses with outputs in Word and PowerPoint. You can specify figures, tables and report structure in a user-definable 'YAML' file. Also you can use the internal functions to access the figures and tables to allow their including in other outputs (e.g. R Markdown).
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between nlmixr2rpt versions 0.2.0 dated 2023-06-06 and 0.2.1 dated 2025-07-17
DESCRIPTION | 15 MD5 | 46 NEWS.md | 10 R/build_figures.R | 62 R/rptnlmixr.R | 109 README.md | 2 build/vignette.rds |binary inst/doc/Accessing_Figures_and_Tables.R | 25 inst/doc/Accessing_Figures_and_Tables.Rmd | 12 inst/doc/Accessing_Figures_and_Tables.html | 81 inst/doc/Reporting_nlmixr_Fit_Results.R | 44 inst/doc/Reporting_nlmixr_Fit_Results.Rmd | 10 inst/doc/Reporting_nlmixr_Fit_Results.html | 84 inst/examples/TEST_DATA.csv |20402 +++++++++++++++-------------- inst/examples/TEST_DATA_DDT.csv | 18 inst/examples/report_fit_test_lg_tbl.yaml |only man/build_figures.Rd | 4 man/fetch_fdim.Rd | 2 man/fetch_option.Rd | 2 man/process_ph.Rd | 2 man/report_fit.Rd | 4 man/yaml_read_fit.Rd | 2 vignettes/Accessing_Figures_and_Tables.Rmd | 12 vignettes/Reporting_nlmixr_Fit_Results.Rmd | 10 vignettes/dv_vs_pred-Word.png |only 25 files changed, 11013 insertions(+), 9945 deletions(-)
Title: Fast and Efficient Access to MODIS Earth Observation Data
Description: Programmatic interface to several NASA Earth Observation 'OPeNDAP' servers (Open-source Project for a Network Data Access Protocol) (<https://www.opendap.org/>). Allows for easy downloads of MODIS subsets, as well as other Earth Observation datacubes, in a time-saving and efficient way : by sampling it at the very downloading phase (spatially, temporally and dimensionally).
Author: Paul Taconet [aut, cre, cph] ,
Nicolas Moiroux [fnd] ,
French National Research Institute for Sustainable Development, IRD
[fnd]
Maintainer: Paul Taconet <paul.taconet@gmail.com>
Diff between modisfast versions 1.0.0 dated 2024-11-12 and 1.0.2 dated 2025-07-17
DESCRIPTION | 11 MD5 | 23 NEWS.md | 26 R/functions_import_data.R | 13 R/internal_tests.R | 18 R/sysdata.rda |binary R/zzz.R |only README.md | 2542 ++++++++++++++++++++++++++------- data/entomological_data.rda |binary inst/CITATION | 23 man/figures/logo.png |binary tests/testthat/test-mf_download_data.R | 4 tests/testthat/test-mf_get_url.R | 8 13 files changed, 2078 insertions(+), 590 deletions(-)
Title: Delineating Inter- And Intra-Antibody Repertoire Evolution
Description: The generated wealth of immune repertoire sequencing data
requires software to investigate and quantify inter- and
intra-antibody repertoire evolution to uncover how B cells evolve
during immune responses. Here, we present 'AntibodyForests', a software
to investigate and quantify inter- and intra-antibody repertoire
evolution.
Author: Daphne van Ginneken [aut, cre],
Alexander Yermanos [aut],
Valentijn Tromp [aut],
Tudor-Stefan Cotet [ctb]
Maintainer: Daphne van Ginneken <daphne.v.ginneken@gmail.com>
Diff between AntibodyForests versions 1.0.0 dated 2025-01-23 and 1.1.0 dated 2025-07-17
DESCRIPTION | 9 MD5 | 60 +-- NAMESPACE | 4 R/Af_PLM_dataframe.R | 53 ++ R/Af_build.R | 39 +- R/Af_compare_PLM.R |only R/Af_distance_scatterplot.R | 4 R/Af_edge_RMSD.R | 10 R/Af_metrics.R | 68 +++ R/Af_node_size_boxplot.R |only R/Af_plot_PLM.R | 22 - R/Af_plot_PLM_mut_vs_cons.R |only R/Af_plot_tree.R | 38 +- R/Af_to_newick.R | 2 R/VDJ_3d_properties.R | 10 R/VDJ_import_IgBLAST_annotations.R | 10 R/igraph_to_phylo.R | 3 R/newick_to_Af.R |only README.md | 60 +++ data/PLM_dataframe.rda |binary inst/doc/AntibodyForests_vignette.R | 594 ++++++++++++++++----------------- inst/doc/AntibodyForests_vignette.Rmd | 6 inst/doc/AntibodyForests_vignette.html | 16 man/Af_compare_PLM.Rd |only man/Af_distance_scatterplot.Rd | 6 man/Af_metrics.Rd | 5 man/Af_node_size_boxplot.Rd |only man/Af_plot_PLM.Rd | 7 man/Af_plot_PLM_mut_vs_cons.Rd |only man/Af_to_newick.Rd | 2 man/PLM_dataframe.Rd | 2 man/VDJ_import_IgBLAST_annotations.Rd | 4 man/igraph_to_phylo.Rd | 3 man/newick_to_Af.Rd |only vignettes/AntibodyForests_vignette.Rmd | 6 35 files changed, 613 insertions(+), 430 deletions(-)
More information about AntibodyForests at CRAN
Permanent link
Title: Scraper for National Hockey League Data
Description: Scrapes data from the 'NHL' and 'ESPN' APIs into 'tibble's. It primarily wraps endpoints documented by Zach Maludzinski (2023) <https://github.com/Zmalski/NHL-API-Reference>, Drew Hynes (2018) <https://gitlab.com/dword4/nhlapi/>, and Joseph Wilson (2023) <https://github.com/pseudo-r/Public-ESPN-API>, covering data from high-level multi-season summaries and award winners to low-level play-by-play logs and sports books' odds.
Author: Rento Saijo [aut, cre, cph] ,
Lars Skytte [ctb]
Maintainer: Rento Saijo <rentosaijo0527@gmail.com>
Diff between nhlscraper versions 0.1.1 dated 2025-06-11 and 0.2.0 dated 2025-07-17
nhlscraper-0.1.1/nhlscraper/man/get_draft_information.Rd |only nhlscraper-0.1.1/nhlscraper/man/get_playoff_bracket.Rd |only nhlscraper-0.1.1/nhlscraper/man/get_series_carousel.Rd |only nhlscraper-0.1.1/nhlscraper/tests/testthat/test-get_draft_information.R |only nhlscraper-0.1.1/nhlscraper/tests/testthat/test-get_playoff_bracket.R |only nhlscraper-0.1.1/nhlscraper/tests/testthat/test-get_series_carousel.R |only nhlscraper-0.2.0/nhlscraper/DESCRIPTION | 17 nhlscraper-0.2.0/nhlscraper/MD5 | 208 ++++-- nhlscraper-0.2.0/nhlscraper/NAMESPACE | 31 - nhlscraper-0.2.0/nhlscraper/NEWS.md | 152 +++-- nhlscraper-0.2.0/nhlscraper/R/Award.R |only nhlscraper-0.2.0/nhlscraper/R/Draft.R | 94 +-- nhlscraper-0.2.0/nhlscraper/R/ESPNAthlete.R |only nhlscraper-0.2.0/nhlscraper/R/ESPNCoach.R |only nhlscraper-0.2.0/nhlscraper/R/ESPNEvent.R |only nhlscraper-0.2.0/nhlscraper/R/ESPNOther.R |only nhlscraper-0.2.0/nhlscraper/R/ESPNTeam.R |only nhlscraper-0.2.0/nhlscraper/R/Game.R | 155 ++--- nhlscraper-0.2.0/nhlscraper/R/Goalie.R | 140 ++-- nhlscraper-0.2.0/nhlscraper/R/League.R | 70 +- nhlscraper-0.2.0/nhlscraper/R/Other.R | 181 +++-- nhlscraper-0.2.0/nhlscraper/R/Player.R | 41 + nhlscraper-0.2.0/nhlscraper/R/Playoff.R | 61 +- nhlscraper-0.2.0/nhlscraper/R/Record.R |only nhlscraper-0.2.0/nhlscraper/R/Skater.R | 157 ++--- nhlscraper-0.2.0/nhlscraper/R/Team.R | 304 +++++----- nhlscraper-0.2.0/nhlscraper/R/Utility.R | 46 + nhlscraper-0.2.0/nhlscraper/R/zzz.R | 7 nhlscraper-0.2.0/nhlscraper/README.md | 141 ---- nhlscraper-0.2.0/nhlscraper/build/vignette.rds |binary nhlscraper-0.2.0/nhlscraper/inst/doc/nhlscraper.R | 91 -- nhlscraper-0.2.0/nhlscraper/inst/doc/nhlscraper.Rmd | 112 --- nhlscraper-0.2.0/nhlscraper/inst/doc/nhlscraper.html | 104 --- nhlscraper-0.2.0/nhlscraper/man/espn_api.Rd |only nhlscraper-0.2.0/nhlscraper/man/figures |only nhlscraper-0.2.0/nhlscraper/man/get_attendance.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_award_winners.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_awards.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_bracket.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_configuration.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_countries.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_draft_picks.Rd | 13 nhlscraper-0.2.0/nhlscraper/man/get_draft_rankings.Rd | 13 nhlscraper-0.2.0/nhlscraper/man/get_draft_tracker.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_drafts.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_athlete.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_athletes.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_coach.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_coach_career.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_coaches.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_event.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_event_odds.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_event_officials.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_event_play_by_play.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_event_stars.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_events.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_futures.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_injuries.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_team.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_teams.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_espn_transactions.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_franchise_season_by_season.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_franchise_team_totals.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_franchise_vs_franchise.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_franchises.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_game_boxscore.Rd | 6 nhlscraper-0.2.0/nhlscraper/man/get_game_landing.Rd | 6 nhlscraper-0.2.0/nhlscraper/man/get_game_story.Rd | 6 nhlscraper-0.2.0/nhlscraper/man/get_games.Rd | 7 nhlscraper-0.2.0/nhlscraper/man/get_gc_play_by_play.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_glossary.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_goalie_leaders.Rd | 10 nhlscraper-0.2.0/nhlscraper/man/get_goalie_milestones.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_goalie_statistics.Rd | 37 - nhlscraper-0.2.0/nhlscraper/man/get_goalies.Rd | 8 nhlscraper-0.2.0/nhlscraper/man/get_officials.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_partner_odds.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_player_game_log.Rd | 6 nhlscraper-0.2.0/nhlscraper/man/get_player_landing.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_players.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_schedule.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_scoreboards.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_scores.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_season_now.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_seasons.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_series.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_series_schedule.Rd | 8 nhlscraper-0.2.0/nhlscraper/man/get_shift_charts.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_skater_leaders.Rd | 10 nhlscraper-0.2.0/nhlscraper/man/get_skater_milestones.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_skater_statistics.Rd | 36 - nhlscraper-0.2.0/nhlscraper/man/get_skaters.Rd | 8 nhlscraper-0.2.0/nhlscraper/man/get_spotlight_players.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_standings.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_standings_information.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_streams.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_team_prospects.Rd | 7 nhlscraper-0.2.0/nhlscraper/man/get_team_roster.Rd | 9 nhlscraper-0.2.0/nhlscraper/man/get_team_roster_statistics.Rd | 10 nhlscraper-0.2.0/nhlscraper/man/get_team_schedule.Rd | 6 nhlscraper-0.2.0/nhlscraper/man/get_team_scoreboard.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_team_seasons.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_team_statistics.Rd | 21 nhlscraper-0.2.0/nhlscraper/man/get_teams.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/get_tv_schedule.Rd | 4 nhlscraper-0.2.0/nhlscraper/man/get_venues.Rd |only nhlscraper-0.2.0/nhlscraper/man/get_wsc_play_by_play.Rd | 2 nhlscraper-0.2.0/nhlscraper/man/nhl_api.Rd | 13 nhlscraper-0.2.0/nhlscraper/man/ping.Rd | 4 nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_attendance.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_award_winners.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_awards.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_bracket.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_draft_picks.R | 6 nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_drafts.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_athlete.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_athletes.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_coach.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_coach_career.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_coaches.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_event.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_event_odds.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_event_officials.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_event_play_by_play.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_event_stars.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_events.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_futures.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_injuries.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_team.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_teams.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_espn_transactions.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_franchise_season_by_season.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_franchise_team_totals.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_franchise_vs_franchise.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_officials.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_partner_odds.R | 6 nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_players.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_series.R |only nhlscraper-0.2.0/nhlscraper/tests/testthat/test-get_venues.R |only nhlscraper-0.2.0/nhlscraper/vignettes/index.md |only nhlscraper-0.2.0/nhlscraper/vignettes/nhlscraper.Rmd | 112 --- 141 files changed, 1168 insertions(+), 1380 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] ,
Etienne Bacher [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between datawizard versions 1.1.0 dated 2025-05-09 and 1.2.0 dated 2025-07-17
DESCRIPTION | 16 MD5 | 98 - NAMESPACE | 8 NEWS.md | 34 R/data_match.R | 10 R/data_read.R | 37 R/data_rename.R | 33 R/data_tabulate.R | 347 +++++- R/data_write.R | 14 R/data_xtabulate.R | 6 R/demean.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 man/data_match.Rd | 14 man/data_read.Rd | 14 man/data_rename.Rd | 16 man/data_tabulate.Rd | 46 man/demean.Rd | 2 tests/testthat/_snaps/categorize.md | 92 - tests/testthat/_snaps/contr.deviation.md | 46 tests/testthat/_snaps/data_codebook.md | 1370 ++++++++++++------------- tests/testthat/_snaps/data_modify.md | 208 +-- tests/testthat/_snaps/data_partition.md | 272 ++-- tests/testthat/_snaps/data_peek.md | 86 - tests/testthat/_snaps/data_rescale.md | 86 - tests/testthat/_snaps/data_seek.md | 34 tests/testthat/_snaps/data_separate.md | 308 ++--- tests/testthat/_snaps/data_summary.md | 110 +- tests/testthat/_snaps/data_tabulate.md | 440 ++++++-- tests/testthat/_snaps/data_to_factor.md | 168 +-- tests/testthat/_snaps/data_to_long.md | 112 +- tests/testthat/_snaps/data_to_numeric.md | 86 - tests/testthat/_snaps/demean.md | 192 +-- tests/testthat/_snaps/describe_distribution.md | 242 ++-- tests/testthat/_snaps/empty-dataframe.md | 68 - tests/testthat/_snaps/means_by_group.md | 344 +++--- tests/testthat/_snaps/normalize.md | 26 tests/testthat/_snaps/print.dw_transformer.md | 256 ++-- tests/testthat/_snaps/ranktransform.md | 26 tests/testthat/_snaps/rescale_weights.md | 394 +++---- tests/testthat/_snaps/reshape_ci.md | 56 - tests/testthat/_snaps/skewness-kurtosis.md | 192 +-- tests/testthat/_snaps/smoothness.md | 22 tests/testthat/_snaps/text_format.md | 110 +- tests/testthat/_snaps/winsorization.md | 14 tests/testthat/test-data_read.R | 22 tests/testthat/test-data_rename.R | 21 tests/testthat/test-data_tabulate.R | 127 ++ tests/testthat/test-describe_distribution.R | 1 50 files changed, 3425 insertions(+), 2804 deletions(-)
Title: Read the Swiss Register of Plant Protection Products
Description: Generate data objects from XML versions of the Swiss
Register of Plant Protection Products. An online version of the
register can be accessed at <https://www.psm.admin.ch/de/produkte>. There is no
guarantee of correspondence of the data read in using this package with that
online version, or with the original registration documents. Also, the
Federal Food Safety and Veterinary Office, coordinating the authorisation of
plant protection products in Switzerland, does not answer requests regarding
this package.
Author: Daniel Baumgartner [ctb] ,
Marcel Mathis [rev, ctb],
Romualdus Kasteel [rev] ,
Elisabeth Lutz [ctb],
Johannes Ranke [aut, cre] ,
Agroscope [cph]
Maintainer: Johannes Ranke <johannes.ranke@agroscope.admin.ch>
Diff between srppp versions 1.0.1 dated 2024-11-01 and 1.1.0 dated 2025-07-17
srppp-1.0.1/srppp/vignettes/joss |only srppp-1.1.0/srppp/DESCRIPTION | 13 srppp-1.1.0/srppp/MD5 | 69 srppp-1.1.0/srppp/NAMESPACE | 8 srppp-1.1.0/srppp/NEWS.md | 13 srppp-1.1.0/srppp/R/alternatives.R | 132 srppp-1.1.0/srppp/R/resolve_cultures.R |only srppp-1.1.0/srppp/R/srppp-package.R | 1 srppp-1.1.0/srppp/R/srppp-xml-culture-tree.R |only srppp-1.1.0/srppp/R/srppp-xml.R | 116 srppp-1.1.0/srppp/R/use-rates.R | 25 srppp-1.1.0/srppp/README.md | 13 srppp-1.1.0/srppp/build/vignette.rds |binary srppp-1.1.0/srppp/inst/doc/srppp.R | 85 srppp-1.1.0/srppp/inst/doc/srppp.html | 1917 +++++++++-- srppp-1.1.0/srppp/inst/doc/srppp.rmd | 116 srppp-1.1.0/srppp/inst/doc/srppp_products_with_MO.R | 10 srppp-1.1.0/srppp/inst/doc/srppp_products_with_MO.html | 545 +-- srppp-1.1.0/srppp/inst/doc/srppp_products_with_MO.rmd | 12 srppp-1.1.0/srppp/inst/testdata |only srppp-1.1.0/srppp/man/alternative_products.Rd | 73 srppp-1.1.0/srppp/man/application_rate_g_per_ha.Rd | 13 srppp-1.1.0/srppp/man/build_culture_tree.Rd |only srppp-1.1.0/srppp/man/resolve_cultures.Rd |only srppp-1.1.0/srppp/man/srppp_dm.Rd | 25 srppp-1.1.0/srppp/man/srppp_xml_define_use_numbers.Rd | 2 srppp-1.1.0/srppp/man/srppp_xml_get.Rd | 4 srppp-1.1.0/srppp/man/srppp_xml_get_ingredients.Rd | 3 srppp-1.1.0/srppp/man/srppp_xml_get_parallel_imports.Rd | 4 srppp-1.1.0/srppp/man/srppp_xml_get_products.Rd | 4 srppp-1.1.0/srppp/man/srppp_xml_get_substances.Rd | 2 srppp-1.1.0/srppp/man/srppp_xml_get_uses.Rd | 8 srppp-1.1.0/srppp/tests/testthat/setup.R |only srppp-1.1.0/srppp/tests/testthat/test-alternative_products.R |only srppp-1.1.0/srppp/tests/testthat/test-resolve_cultures.R |only srppp-1.1.0/srppp/tests/testthat/test-srppp_xml.R | 15 srppp-1.1.0/srppp/tests/testthat/test-use_rates.R | 31 srppp-1.1.0/srppp/vignettes/srppp.rmd | 116 srppp-1.1.0/srppp/vignettes/srppp_products_with_MO.rmd | 12 39 files changed, 2625 insertions(+), 762 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <andrey.anikin@cogsci.se>
Diff between soundgen versions 2.7.2 dated 2025-01-22 and 2.7.3 dated 2025-07-17
DESCRIPTION | 8 MD5 | 120 +++++----- NEWS | 17 + R/analyze.R | 3 R/formants.R | 3 R/math.R | 5 R/modulationSpectrum.R | 13 - R/modulationSpectrum_utilities.R | 19 - R/pitch_postprocessing.R | 5 R/presets.R | 28 +- R/segment.R | 21 + R/smoothContours.R | 8 R/soundgen.R | 6 R/soundgen_utilities.R | 1 R/source.R | 47 ++-- R/spectrogram.R | 440 ++++++++++++++++++++------------------- README.md | 12 - data/presets.rda |binary man/analyze.Rd | 12 - man/audSpectrogram.Rd | 2 man/compareSounds.Rd | 12 - man/dot-analyze.Rd | 12 - man/dot-audSpectrogram.Rd | 2 man/dot-flatSpectrum.Rd | 12 - man/dot-getLoudness.Rd | 12 - man/dot-getRMS.Rd | 12 - man/dot-getSurprisal.Rd | 2 man/dot-segment.Rd | 20 + man/dot-shiftFormants.Rd | 12 - man/dot-shiftPitch.Rd | 12 - man/dot-spectrogram.Rd | 14 - man/dot-ssm.Rd | 12 - man/findBursts.Rd | 3 man/findSyllables.Rd | 3 man/findVoicedSegments.Rd | 9 man/flatSpectrum.Rd | 12 - man/generateGC.Rd | 4 man/getFormants.Rd | 12 - man/getFrameBank.Rd | 9 man/getLoudness.Rd | 12 - man/getMelSpec.Rd | 12 - man/getRMS.Rd | 12 - man/getSmoothSpectrum.Rd | 3 man/getSurprisal.Rd | 2 man/invertSpectrogram.Rd | 12 - man/modulationSpectrum.Rd | 4 man/msToSpec.Rd | 12 - man/noiseRemoval.Rd | 12 - man/normalizeFolder.Rd | 12 - man/pathfinder.Rd | 9 man/pathfinding_fast.Rd | 9 man/plotMS.Rd | 4 man/plotSpec.Rd | 2 man/plotUnrasterized.Rd | 3 man/segment.Rd | 26 +- man/shiftFormants.Rd | 12 - man/shiftPitch.Rd | 12 - man/specToMS.Rd | 12 - man/spectrogram.Rd | 48 ++-- man/ssm.Rd | 12 - man/transplantFormants.Rd | 12 - 61 files changed, 671 insertions(+), 539 deletions(-)
Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses). Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.2.3 dated 2025-05-21 and 0.3.1 dated 2025-07-17
DESCRIPTION | 23 - MD5 | 24 - R/Spower.R | 72 ++++- R/SpowerCurve.R | 7 R/util.R | 6 README.md | 21 + inst/doc/gpower_examples.Rmd | 202 +++++++++++---- inst/doc/gpower_examples.html | 561 ++++++++++++++++++++++++------------------ man/Spower.Rd | 41 ++- man/SpowerCurve.Rd | 4 man/figures |only tests/testthat/test-Spower.R | 64 ++++ vignettes/gpower_examples.Rmd | 202 +++++++++++---- 13 files changed, 849 insertions(+), 378 deletions(-)
Title: Quantifying (Animal) Sound Degradation
Description: Intended to facilitate acoustic analysis of (animal) sound propagation experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
Author: Marcelo Araya-Salas [aut, cre] ,
Michael Mahoney [rev] ,
Dena Clink [rev]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between baRulho versions 2.1.3 dated 2025-01-24 and 2.1.5 dated 2025-07-17
DESCRIPTION | 16 - MD5 | 124 +++++------ NAMESPACE | 1 NEWS.md | 32 ++ R/add_noise.R | 23 +- R/align_test_files.R | 7 R/attenuation.R | 5 R/auto_realign.R | 33 +-- R/blur_ratio.R | 5 R/detection_distance.R | 9 R/envelope_correlation.R | 5 R/excess_attenuation.R | 5 R/find_markers.R | 10 R/internal_functions.R | 404 ++++++++++++++++++++++++++++++------- R/manual_realign.R | 15 - R/master_est-data.R | 2 R/master_sound_file.R | 2 R/noise_profile.R | 8 R/plot_aligned_sounds.R | 8 R/plot_blur_ratio.R | 5 R/plot_degradation.R | 48 ++-- R/set_reference_sounds.R | 6 R/signal_to_noise_ratio.R | 43 ++- R/spcc.R | 6 R/spectrum_blur_ratio.R | 6 R/spectrum_correlation.R | 6 R/spot_ambient_noise.R |only R/synth_sounds.R | 12 - R/tail_to_signal_ratio.R | 15 - R/template_params.R | 4 README.md | 23 +- data/master_est.rda |binary inst/doc/align_test_sounds.R | 93 ++++---- inst/doc/align_test_sounds.Rmd | 34 +-- inst/doc/align_test_sounds.html | 223 ++++++++------------ inst/doc/quantify_degradation.R | 114 +++++----- inst/doc/quantify_degradation.Rmd | 31 +- inst/doc/quantify_degradation.html | 114 +++++----- man/add_noise.Rd | 11 - man/align_test_files.Rd | 6 man/attenuation.Rd | 4 man/auto_realign.Rd | 13 - man/blur_ratio.Rd | 6 man/detection_distance.Rd | 10 man/envelope_correlation.Rd | 6 man/excess_attenuation.Rd | 6 man/find_markers.Rd | 4 man/manual_realign.Rd | 10 man/master_est.Rd | 2 man/master_sound_file.Rd | 3 man/noise_profile.Rd | 7 man/plot_aligned_sounds.Rd | 6 man/plot_blur_ratio.Rd | 6 man/plot_degradation.Rd | 6 man/set_reference_sounds.Rd | 4 man/signal_to_noise_ratio.Rd | 8 man/spcc.Rd | 7 man/spectrum_blur_ratio.Rd | 7 man/spectrum_correlation.Rd | 7 man/spot_ambient_noise.Rd |only man/synth_sounds.Rd | 10 man/tail_to_signal_ratio.Rd | 14 - vignettes/align_test_sounds.Rmd | 34 +-- vignettes/quantify_degradation.Rmd | 31 +- 64 files changed, 990 insertions(+), 735 deletions(-)
Title: Streamline Bioacoustic Analysis
Description: Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. 'warbleR' makes use of the basic sound analysis tools from the packages 'tuneR' and 'seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
Author: Marcelo Araya-Salas [aut, cre] ,
Grace Smith-Vidaurre [aut]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between warbleR versions 1.1.34 dated 2025-01-17 and 1.1.35 dated 2025-07-17
warbleR-1.1.34/warbleR/inst/doc/d_warbleR_workflow_03.R |only warbleR-1.1.34/warbleR/inst/doc/d_warbleR_workflow_03.Rmd |only warbleR-1.1.34/warbleR/inst/doc/d_warbleR_workflow_03.html |only warbleR-1.1.34/warbleR/vignettes/154161-autodetec.th15.jpg |only warbleR-1.1.34/warbleR/vignettes/Catalog_p1.jpeg |only warbleR-1.1.34/warbleR/vignettes/Phae.XC.csv |only warbleR-1.1.34/warbleR/vignettes/Phae.lon.XC.csv |only warbleR-1.1.34/warbleR/vignettes/Phae_hisnr.csv |only warbleR-1.1.34/warbleR/vignettes/d_warbleR_workflow_03.Rmd |only warbleR-1.1.34/warbleR/vignettes/logo.png |only warbleR-1.1.35/warbleR/DESCRIPTION | 12 warbleR-1.1.35/warbleR/MD5 | 258 +-- warbleR-1.1.35/warbleR/NAMESPACE | 1 warbleR-1.1.35/warbleR/NEWS.md | 14 warbleR-1.1.35/warbleR/R/RcppExports.R | 4 warbleR-1.1.35/warbleR/R/by_element_est.R | 6 warbleR-1.1.35/warbleR/R/catalog.R | 2 warbleR-1.1.35/warbleR/R/catalog2pdf.R | 2 warbleR-1.1.35/warbleR/R/check_sels.R | 15 warbleR-1.1.35/warbleR/R/check_sound_files.R | 71 warbleR-1.1.35/warbleR/R/color_spectro.R | 2 warbleR-1.1.35/warbleR/R/compare_methods.R | 2 warbleR-1.1.35/warbleR/R/consolidate.R | 2 warbleR-1.1.35/warbleR/R/cross_correlation.R | 8 warbleR-1.1.35/warbleR/R/cut_sels.R | 3 warbleR-1.1.35/warbleR/R/duration_sound_files.R | 4 warbleR-1.1.35/warbleR/R/filter_sels.R | 4 warbleR-1.1.35/warbleR/R/find_clipping.R | 4 warbleR-1.1.35/warbleR/R/fix_wavs.R | 4 warbleR-1.1.35/warbleR/R/freq_DTW.R | 6 warbleR-1.1.35/warbleR/R/freq_range.R | 5 warbleR-1.1.35/warbleR/R/freq_range_detec.R | 5 warbleR-1.1.35/warbleR/R/full_spectrogram2pdf.R | 5 warbleR-1.1.35/warbleR/R/full_spectrograms.R | 37 warbleR-1.1.35/warbleR/R/gaps.R | 5 warbleR-1.1.35/warbleR/R/image_to_wave.R | 5 warbleR-1.1.35/warbleR/R/inflections.R | 5 warbleR-1.1.35/warbleR/R/info_sound_files.R | 5 warbleR-1.1.35/warbleR/R/internal_functions.R | 43 warbleR-1.1.35/warbleR/R/mfcc_stats.R | 5 warbleR-1.1.35/warbleR/R/move_images.R | 4 warbleR-1.1.35/warbleR/R/mp32wav.R | 5 warbleR-1.1.35/warbleR/R/multi_DTW.R | 5 warbleR-1.1.35/warbleR/R/overlapping_sels.R | 5 warbleR-1.1.35/warbleR/R/phylo_spectro.R | 4 warbleR-1.1.35/warbleR/R/query_xc.R | 17 warbleR-1.1.35/warbleR/R/read_sound_file.R | 5 warbleR-1.1.35/warbleR/R/read_wave.R | 5 warbleR-1.1.35/warbleR/R/remove_channels.R | 5 warbleR-1.1.35/warbleR/R/remove_silence.R | 5 warbleR-1.1.35/warbleR/R/rename_est_waves.R | 5 warbleR-1.1.35/warbleR/R/resample_est.R | 5 warbleR-1.1.35/warbleR/R/selection_table.R | 13 warbleR-1.1.35/warbleR/R/sig2noise.R | 4 warbleR-1.1.35/warbleR/R/simulate_songs.R | 5 warbleR-1.1.35/warbleR/R/snr_spectrograms.R | 6 warbleR-1.1.35/warbleR/R/song_analysis.R | 20 warbleR-1.1.35/warbleR/R/sound_pressure_level.R | 8 warbleR-1.1.35/warbleR/R/spectro_analysis.R | 5 warbleR-1.1.35/warbleR/R/spectrograms.R | 5 warbleR-1.1.35/warbleR/R/split_sound_files.R | 6 warbleR-1.1.35/warbleR/R/tailor_sels.R | 5 warbleR-1.1.35/warbleR/R/test_coordination.R | 3 warbleR-1.1.35/warbleR/R/track_freq_contour.R | 5 warbleR-1.1.35/warbleR/R/track_harmonic.R | 5 warbleR-1.1.35/warbleR/R/waveform_similarity.R |only warbleR-1.1.35/warbleR/R/wpd_features.R | 5 warbleR-1.1.35/warbleR/R/xc_maps.R | 4 warbleR-1.1.35/warbleR/build/vignette.rds |binary warbleR-1.1.35/warbleR/data/comp_matrix.rda |binary warbleR-1.1.35/warbleR/data/lbh_selec_table.rda |binary warbleR-1.1.35/warbleR/data/sim_coor_sing.rda |binary warbleR-1.1.35/warbleR/data/sth_annotations.rda |binary warbleR-1.1.35/warbleR/inst/doc/a_warbleR.Rmd | 6 warbleR-1.1.35/warbleR/inst/doc/a_warbleR.html | 45 warbleR-1.1.35/warbleR/inst/doc/b_annotation_data_format.Rmd | 16 warbleR-1.1.35/warbleR/inst/doc/b_annotation_data_format.html | 52 warbleR-1.1.35/warbleR/inst/doc/c_warbleR_workflow_02.R | 354 +++- warbleR-1.1.35/warbleR/inst/doc/c_warbleR_workflow_02.Rmd | 565 ++++-- warbleR-1.1.35/warbleR/inst/doc/c_warbleR_workflow_02.html | 827 ++++++---- warbleR-1.1.35/warbleR/man/by_element_est.Rd | 4 warbleR-1.1.35/warbleR/man/catalog.Rd | 2 warbleR-1.1.35/warbleR/man/catalog2pdf.Rd | 2 warbleR-1.1.35/warbleR/man/check_sels.Rd | 2 warbleR-1.1.35/warbleR/man/check_sound_files.Rd | 18 warbleR-1.1.35/warbleR/man/color_spectro.Rd | 2 warbleR-1.1.35/warbleR/man/compare_methods.Rd | 2 warbleR-1.1.35/warbleR/man/consolidate.Rd | 2 warbleR-1.1.35/warbleR/man/cross_correlation.Rd | 4 warbleR-1.1.35/warbleR/man/cut_sels.Rd | 2 warbleR-1.1.35/warbleR/man/duration_sound_files.Rd | 2 warbleR-1.1.35/warbleR/man/envelope.Rd | 2 warbleR-1.1.35/warbleR/man/filter_sels.Rd | 2 warbleR-1.1.35/warbleR/man/find_clipping.Rd | 2 warbleR-1.1.35/warbleR/man/fix_wavs.Rd | 2 warbleR-1.1.35/warbleR/man/freq_DTW.Rd | 3 warbleR-1.1.35/warbleR/man/freq_range.Rd | 2 warbleR-1.1.35/warbleR/man/freq_range_detec.Rd | 2 warbleR-1.1.35/warbleR/man/full_spectrogram2pdf.Rd | 2 warbleR-1.1.35/warbleR/man/full_spectrograms.Rd | 2 warbleR-1.1.35/warbleR/man/gaps.Rd | 2 warbleR-1.1.35/warbleR/man/image_to_wave.Rd | 2 warbleR-1.1.35/warbleR/man/inflections.Rd | 2 warbleR-1.1.35/warbleR/man/info_sound_files.Rd | 2 warbleR-1.1.35/warbleR/man/map_xc.Rd | 2 warbleR-1.1.35/warbleR/man/mfcc_stats.Rd | 2 warbleR-1.1.35/warbleR/man/move_images.Rd | 2 warbleR-1.1.35/warbleR/man/mp32wav.Rd | 2 warbleR-1.1.35/warbleR/man/multi_DTW.Rd | 2 warbleR-1.1.35/warbleR/man/overlapping_sels.Rd | 2 warbleR-1.1.35/warbleR/man/phylo_spectro.Rd | 2 warbleR-1.1.35/warbleR/man/query_xc.Rd | 2 warbleR-1.1.35/warbleR/man/read_sound_file.Rd | 2 warbleR-1.1.35/warbleR/man/read_wave.Rd | 2 warbleR-1.1.35/warbleR/man/remove_channels.Rd | 2 warbleR-1.1.35/warbleR/man/remove_silence.Rd | 2 warbleR-1.1.35/warbleR/man/rename_est_waves.Rd | 2 warbleR-1.1.35/warbleR/man/resample_est.Rd | 3 warbleR-1.1.35/warbleR/man/selection_table.Rd | 2 warbleR-1.1.35/warbleR/man/sig2noise.Rd | 3 warbleR-1.1.35/warbleR/man/simulate_songs.Rd | 2 warbleR-1.1.35/warbleR/man/snr_spectrograms.Rd | 3 warbleR-1.1.35/warbleR/man/song_analysis.Rd | 2 warbleR-1.1.35/warbleR/man/sound_pressure_level.Rd | 3 warbleR-1.1.35/warbleR/man/spectro_analysis.Rd | 2 warbleR-1.1.35/warbleR/man/spectrograms.Rd | 2 warbleR-1.1.35/warbleR/man/split_sound_files.Rd | 2 warbleR-1.1.35/warbleR/man/tailor_sels.Rd | 2 warbleR-1.1.35/warbleR/man/test_coordination.Rd | 2 warbleR-1.1.35/warbleR/man/track_freq_contour.Rd | 2 warbleR-1.1.35/warbleR/man/track_harmonic.Rd | 2 warbleR-1.1.35/warbleR/man/waveform_similarity.Rd |only warbleR-1.1.35/warbleR/man/wpd_features.Rd | 2 warbleR-1.1.35/warbleR/vignettes/a_warbleR.Rmd | 6 warbleR-1.1.35/warbleR/vignettes/b_annotation_data_format.Rmd | 16 warbleR-1.1.35/warbleR/vignettes/c_warbleR_workflow_02.Rmd | 565 ++++-- 136 files changed, 2033 insertions(+), 1261 deletions(-)
Title: Generate UpSet Plots of VP and HP Based on the ASV Concept
Description: Using matrix layout to visualize the unique, common, or individual contribution of each predictor (or matrix of predictors) towards explained variation on different models. These contributions were derived from variation partitioning (VP) and hierarchical partitioning (HP), applying the algorithm of "Lai et al. (2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution, 13: 782-788 <doi:10.1111/2041-210X.13800>".
Author: Jiangshan Lai [aut, cre] ,
Yao Liu [aut],
Bangken Ying [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between upset.hp versions 0.0.2 dated 2025-06-27 and 0.0.3 dated 2025-07-17
upset.hp-0.0.2/upset.hp/R/upset.hp.r |only upset.hp-0.0.3/upset.hp/DESCRIPTION | 8 ++++---- upset.hp-0.0.3/upset.hp/MD5 | 8 ++++---- upset.hp-0.0.3/upset.hp/R/upset.hp.R |only upset.hp-0.0.3/upset.hp/R/zzz.r | 2 +- upset.hp-0.0.3/upset.hp/man/upset.hp.Rd | 4 +--- 6 files changed, 10 insertions(+), 12 deletions(-)
Title: Cluster Analysis with Trimming
Description: Trimmed k-means clustering. The method is described in Cuesta-Albertos et al. (1997) <doi:10.1214/aos/1031833664>.
Author: Christian Hennig [aut],
Valentin Todorov [cre]
Maintainer: Valentin Todorov <valentin@todorov.at>
Diff between trimcluster versions 0.1-6 dated 2025-06-28 and 0.2-0 dated 2025-07-17
DESCRIPTION | 15 +++--- MD5 | 13 +++-- NAMESPACE | 11 ++-- R/trimkmeans.R | 111 +++++++++++++++++-------------------------------- R/trimkmeans_orig.R |only man/trimkmeans.Rd | 52 ++++++++++++++++------ tests/trtest.R | 36 ++++++++++++++- tests/trtest.Rout.save | 67 ++++++++++++++++++++++++----- 8 files changed, 187 insertions(+), 118 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre2' (BSD license, see <https://github.com/PCRE2Project/pcre2/blob/master/LICENCE.md>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stephanie Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.6.7 dated 2025-04-11 and 0.6.8 dated 2025-07-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/RcppCWB_package.R | 2 +- inst/doc/vignette.html | 4 ++-- src/cwb/cqp/print-modes.c | 2 +- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Eigendecomposition, Singular-Values and the Power Method
Description: For a data matrix with m rows and n columns (m>=n), the power
method is used to compute, simultaneously, the eigendecomposition
of a square symmetric matrix. This result is used to obtain the
singular value decomposition (SVD) and the principal component
analysis (PCA) results. Compared to the classical SVD method,
the first r singular values can be computed.
Author: Doulaye Dembele [aut, cre]
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between psvd versions 0.1-0 dated 2024-10-25 and 1.0-0 dated 2025-07-17
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- R/calcSVD.R | 12 ++++++++---- man/calcSVD.Rd | 3 ++- 4 files changed, 19 insertions(+), 13 deletions(-)
Title: Tools and Data for Quantitative Peace Science Research
Description: These are useful tools and data sets for the study of quantitative
peace science. The goal for this package is to include tools and data sets
for doing original research that mimics well what a user would have to previously
get from a software package that may not be well-sourced or well-supported.
Those software bundles were useful the extent to which they encourage replications
of long-standing analyses by starting the data-generating process from scratch. However,
a lot of the functionality can be done relatively quickly and more transparently
in the R programming language.
Author: Steve Miller [aut, cre]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between peacesciencer versions 1.1.0 dated 2023-03-24 and 1.2.0 dated 2025-07-17
peacesciencer-1.1.0/peacesciencer/man/ccode_democracy.Rd |only peacesciencer-1.1.0/peacesciencer/man/cow_alliance.Rd |only peacesciencer-1.1.0/peacesciencer/man/cow_gw_years.Rd |only peacesciencer-1.1.0/peacesciencer/man/cow_sdp_gdp.Rd |only peacesciencer-1.1.0/peacesciencer/man/gw_cow_years.Rd |only peacesciencer-1.1.0/peacesciencer/man/gw_sdp_gdp.Rd |only peacesciencer-1.1.0/peacesciencer/man/gwcode_democracy.Rd |only peacesciencer-1.2.0/peacesciencer/DESCRIPTION | 17 peacesciencer-1.2.0/peacesciencer/MD5 | 261 - peacesciencer-1.2.0/peacesciencer/NAMESPACE | 1 peacesciencer-1.2.0/peacesciencer/NEWS.md | 38 peacesciencer-1.2.0/peacesciencer/R/add_archigos.R | 356 +- peacesciencer-1.2.0/peacesciencer/R/add_atop_alliance.R | 234 + peacesciencer-1.2.0/peacesciencer/R/add_capital_distance.R | 592 ++- peacesciencer-1.2.0/peacesciencer/R/add_ccode_to_gw.R | 209 - peacesciencer-1.2.0/peacesciencer/R/add_contiguity.R | 357 +- peacesciencer-1.2.0/peacesciencer/R/add_cow_alliance.R | 66 peacesciencer-1.2.0/peacesciencer/R/add_cow_majors.R | 229 + peacesciencer-1.2.0/peacesciencer/R/add_cow_mids.R | 15 peacesciencer-1.2.0/peacesciencer/R/add_cow_trade.R | 45 peacesciencer-1.2.0/peacesciencer/R/add_creg_fractionalization.R | 364 +- peacesciencer-1.2.0/peacesciencer/R/add_democracy.R | 269 + peacesciencer-1.2.0/peacesciencer/R/add_gml_mids.R | 82 peacesciencer-1.2.0/peacesciencer/R/add_gwcode_to_cow.R | 177 - peacesciencer-1.2.0/peacesciencer/R/add_igos.R | 53 peacesciencer-1.2.0/peacesciencer/R/add_latent_territorial_threat.R |only peacesciencer-1.2.0/peacesciencer/R/add_lead.R | 18 peacesciencer-1.2.0/peacesciencer/R/add_lwuf.R | 5 peacesciencer-1.2.0/peacesciencer/R/add_minimum_distance.R | 557 ++- peacesciencer-1.2.0/peacesciencer/R/add_nmc.R | 204 - peacesciencer-1.2.0/peacesciencer/R/add_peace_years.R | 129 peacesciencer-1.2.0/peacesciencer/R/add_rugged_terrain.R | 78 peacesciencer-1.2.0/peacesciencer/R/add_sdp_gdp.R | 15 peacesciencer-1.2.0/peacesciencer/R/add_sim_gdp_pop.R |only peacesciencer-1.2.0/peacesciencer/R/add_spells.R | 35 peacesciencer-1.2.0/peacesciencer/R/add_strategic_rivalries.R | 340 + peacesciencer-1.2.0/peacesciencer/R/add_ucdp_acd.R | 79 peacesciencer-1.2.0/peacesciencer/R/create_dyadyears.R | 206 - peacesciencer-1.2.0/peacesciencer/R/create_leaderdays.R | 83 peacesciencer-1.2.0/peacesciencer/R/create_leaderdyadyears.R | 47 peacesciencer-1.2.0/peacesciencer/R/create_leaderyears.R | 80 peacesciencer-1.2.0/peacesciencer/R/create_statedays.R | 155 peacesciencer-1.2.0/peacesciencer/R/create_stateyears.R | 161 peacesciencer-1.2.0/peacesciencer/R/data-cow.R |only peacesciencer-1.2.0/peacesciencer/R/data-deprecated.R |only peacesciencer-1.2.0/peacesciencer/R/data-gml.R |only peacesciencer-1.2.0/peacesciencer/R/data-leaders.R |only peacesciencer-1.2.0/peacesciencer/R/data-others.R |only peacesciencer-1.2.0/peacesciencer/R/data.R | 1766 +--------- peacesciencer-1.2.0/peacesciencer/R/download_extdata.R | 38 peacesciencer-1.2.0/peacesciencer/R/helpymchelperson.R | 12 peacesciencer-1.2.0/peacesciencer/R/zzz.R | 3 peacesciencer-1.2.0/peacesciencer/README.md | 148 peacesciencer-1.2.0/peacesciencer/build/partial.rdb |binary peacesciencer-1.2.0/peacesciencer/data/archigossums.rda |only peacesciencer-1.2.0/peacesciencer/data/atop_alliance.rda |binary peacesciencer-1.2.0/peacesciencer/data/cow_capitals.rda |binary peacesciencer-1.2.0/peacesciencer/data/cow_contdir.rda |binary peacesciencer-1.2.0/peacesciencer/data/cow_ddy.rda |binary peacesciencer-1.2.0/peacesciencer/data/false_gw_dyads.rda |binary peacesciencer-1.2.0/peacesciencer/data/gw_capitals.rda |binary peacesciencer-1.2.0/peacesciencer/data/gw_ddy.rda |binary peacesciencer-1.2.0/peacesciencer/data/terrthreat.rda |only peacesciencer-1.2.0/peacesciencer/data/tss_rivalries.rda |binary peacesciencer-1.2.0/peacesciencer/data/ucdp_acd.rda |binary peacesciencer-1.2.0/peacesciencer/inst/CITATION | 4 peacesciencer-1.2.0/peacesciencer/man/LEAD.Rd | 15 peacesciencer-1.2.0/peacesciencer/man/add_archigos.Rd | 31 peacesciencer-1.2.0/peacesciencer/man/add_atop_alliance.Rd | 102 peacesciencer-1.2.0/peacesciencer/man/add_capital_distance.Rd | 44 peacesciencer-1.2.0/peacesciencer/man/add_ccode_to_gw.Rd | 60 peacesciencer-1.2.0/peacesciencer/man/add_contiguity.Rd | 70 peacesciencer-1.2.0/peacesciencer/man/add_cow_alliance.Rd | 49 peacesciencer-1.2.0/peacesciencer/man/add_cow_majors.Rd | 28 peacesciencer-1.2.0/peacesciencer/man/add_cow_mids.Rd | 9 peacesciencer-1.2.0/peacesciencer/man/add_cow_trade.Rd | 35 peacesciencer-1.2.0/peacesciencer/man/add_creg_fractionalization.Rd | 24 peacesciencer-1.2.0/peacesciencer/man/add_democracy.Rd | 47 peacesciencer-1.2.0/peacesciencer/man/add_gml_mids.Rd | 78 peacesciencer-1.2.0/peacesciencer/man/add_gwcode_to_cow.Rd | 22 peacesciencer-1.2.0/peacesciencer/man/add_igos.Rd | 43 peacesciencer-1.2.0/peacesciencer/man/add_latent_territorial_threat.Rd |only peacesciencer-1.2.0/peacesciencer/man/add_lead.Rd | 14 peacesciencer-1.2.0/peacesciencer/man/add_lwuf.Rd | 5 peacesciencer-1.2.0/peacesciencer/man/add_minimum_distance.Rd | 117 peacesciencer-1.2.0/peacesciencer/man/add_nmc.Rd | 35 peacesciencer-1.2.0/peacesciencer/man/add_peace_years.Rd | 122 peacesciencer-1.2.0/peacesciencer/man/add_rugged_terrain.Rd | 64 peacesciencer-1.2.0/peacesciencer/man/add_sdp_gdp.Rd | 13 peacesciencer-1.2.0/peacesciencer/man/add_sim_gdp_pop.Rd |only peacesciencer-1.2.0/peacesciencer/man/add_spells.Rd | 37 peacesciencer-1.2.0/peacesciencer/man/add_strategic_rivalries.Rd | 73 peacesciencer-1.2.0/peacesciencer/man/add_ucdp_acd.Rd | 75 peacesciencer-1.2.0/peacesciencer/man/archigos.Rd | 2 peacesciencer-1.2.0/peacesciencer/man/archigossums.Rd |only peacesciencer-1.2.0/peacesciencer/man/atop_alliance.Rd | 15 peacesciencer-1.2.0/peacesciencer/man/cow_capitals.Rd | 102 peacesciencer-1.2.0/peacesciencer/man/cow_contdir.Rd | 59 peacesciencer-1.2.0/peacesciencer/man/cow_ddy.Rd | 5 peacesciencer-1.2.0/peacesciencer/man/cow_igo_ndy.Rd | 27 peacesciencer-1.2.0/peacesciencer/man/cow_igo_sy.Rd | 24 peacesciencer-1.2.0/peacesciencer/man/cow_majors.Rd | 2 peacesciencer-1.2.0/peacesciencer/man/cow_mid_ddydisps.Rd | 29 peacesciencer-1.2.0/peacesciencer/man/cow_mid_dirdisps.Rd | 26 peacesciencer-1.2.0/peacesciencer/man/cow_mid_disps.Rd | 17 peacesciencer-1.2.0/peacesciencer/man/cow_mindist.Rd | 35 peacesciencer-1.2.0/peacesciencer/man/cow_nmc.Rd | 44 peacesciencer-1.2.0/peacesciencer/man/cow_states.Rd | 13 peacesciencer-1.2.0/peacesciencer/man/cow_trade_sy.Rd | 15 peacesciencer-1.2.0/peacesciencer/man/cow_war_inter.Rd | 33 peacesciencer-1.2.0/peacesciencer/man/cow_war_intra.Rd | 17 peacesciencer-1.2.0/peacesciencer/man/create_dyadyears.Rd | 67 peacesciencer-1.2.0/peacesciencer/man/create_leaderdays.Rd | 37 peacesciencer-1.2.0/peacesciencer/man/create_leaderdyadyears.Rd | 37 peacesciencer-1.2.0/peacesciencer/man/create_leaderyears.Rd | 4 peacesciencer-1.2.0/peacesciencer/man/create_statedays.Rd | 33 peacesciencer-1.2.0/peacesciencer/man/create_stateyears.Rd | 33 peacesciencer-1.2.0/peacesciencer/man/creg.Rd | 94 peacesciencer-1.2.0/peacesciencer/man/data-deprecated.Rd |only peacesciencer-1.2.0/peacesciencer/man/download_extdata.Rd | 36 peacesciencer-1.2.0/peacesciencer/man/false_gw_dyads.Rd | 25 peacesciencer-1.2.0/peacesciencer/man/gml_dirdisp.Rd | 22 peacesciencer-1.2.0/peacesciencer/man/gml_mid_ddlydisps.Rd | 58 peacesciencer-1.2.0/peacesciencer/man/gml_mid_ddydisps.Rd | 34 peacesciencer-1.2.0/peacesciencer/man/gml_mid_dirleaderdisps.Rd | 51 peacesciencer-1.2.0/peacesciencer/man/gml_mid_disps.Rd | 17 peacesciencer-1.2.0/peacesciencer/man/gml_part.Rd | 59 peacesciencer-1.2.0/peacesciencer/man/grh_arms_races.Rd | 8 peacesciencer-1.2.0/peacesciencer/man/gw_capitals.Rd | 110 peacesciencer-1.2.0/peacesciencer/man/gw_ddy.Rd | 7 peacesciencer-1.2.0/peacesciencer/man/gw_mindist.Rd | 35 peacesciencer-1.2.0/peacesciencer/man/gw_states.Rd | 3 peacesciencer-1.2.0/peacesciencer/man/hief.Rd | 11 peacesciencer-1.2.0/peacesciencer/man/leader_codes.Rd | 19 peacesciencer-1.2.0/peacesciencer/man/lwuf.Rd | 2 peacesciencer-1.2.0/peacesciencer/man/maoz_powers.Rd | 17 peacesciencer-1.2.0/peacesciencer/man/rugged.Rd | 36 peacesciencer-1.2.0/peacesciencer/man/td_rivalries.Rd | 4 peacesciencer-1.2.0/peacesciencer/man/terrthreat.Rd |only peacesciencer-1.2.0/peacesciencer/man/tss_rivalries.Rd | 47 peacesciencer-1.2.0/peacesciencer/man/ucdp_acd.Rd | 20 peacesciencer-1.2.0/peacesciencer/man/ucdp_onsets.Rd | 14 142 files changed, 6246 insertions(+), 3899 deletions(-)
Title: Finds the Inflection Point of a Curve
Description: Implementation of methods Extremum Surface Estimator (ESE) and
Extremum Distance Estimator (EDE) to identify the inflection point of a curve .
Christopoulos, DT (2014) <doi:10.48550/arXiv.1206.5478> .
Christopoulos, DT (2016) <https://demovtu.veltech.edu.in/wp-content/uploads/2016/04/Paper-04-2016.pdf> .
Christopoulos, DT (2016) <doi:10.2139/ssrn.3043076> .
Author: Demetris T. Christopoulos [aut, cre]
Maintainer: Demetris T. Christopoulos <dchristop@econ.uoa.gr>
Diff between inflection versions 1.3.6 dated 2022-06-15 and 1.3.7 dated 2025-07-17
DESCRIPTION | 13 MD5 | 63 +-- NEWS.md | 9 R/bede.R | 2 R/bese.R | 2 R/ede.R | 2 R/ese.R | 2 R/findiplist.R | 2 R/uik.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/inflection.R | 8 inst/doc/inflection.Rmd | 2 inst/doc/inflection.html | 294 ++++++++------- inst/doc/inflectionDevelopingMethods.R | 26 - inst/doc/inflectionDevelopingMethods.Rmd | 2 inst/doc/inflectionDevelopingMethods.html | 564 ++++++++++++++++-------------- inst/doc/inflectionMissionImpossible.R | 32 - inst/doc/inflectionMissionImpossible.Rmd | 2 inst/doc/inflectionMissionImpossible.html | 557 +++++++++++++++-------------- man/bede.Rd | 4 man/bese.Rd | 4 man/check_curve.Rd | 8 man/ede.Rd | 4 man/edeci.Rd | 2 man/ese.Rd | 4 man/findipiterplot.Rd | 4 man/findipl.Rd | 4 man/findiplist.Rd | 4 man/inflection-package.Rd | 6 vignettes/inflection.Rmd | 2 vignettes/inflectionDevelopingMethods.Rmd | 2 vignettes/inflectionMissionImpossible.Rmd | 2 33 files changed, 875 insertions(+), 759 deletions(-)
Title: Biologically Explainable Machine Learning Framework
Description: Biologically Explainable Machine Learning Framework for Phenotype Prediction using omics data described in Chen and Schwarz (2017) <doi:10.48550/arXiv.1712.00336>.Identifying reproducible and interpretable biological patterns from high-dimensional omics data is a critical factor in understanding the risk mechanism of complex disease. As such, explainable machine learning can offer biological insight in addition to personalized risk scoring.In this process, a feature space of biological pathways will be generated, and the feature space can also be subsequently analyzed using WGCNA (Described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559> ) methods.
Author: Shunjie Zhang [aut, cre],
Junfang Chen [aut]
Maintainer: Shunjie Zhang <zhang.shunjie@qq.com>
Diff between BioM2 versions 1.1.2 dated 2025-05-14 and 1.1.3 dated 2025-07-17
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 4 ++++ R/BioM2.R | 49 ++++++++++++++++++++++++++++--------------------- man/BioM2.Rd | 3 +++ man/baseModel.Rd | 5 ++++- 6 files changed, 47 insertions(+), 30 deletions(-)
Title: Classification Based on Association Rules
Description: Provides the infrastructure for association rule-based classification including the algorithms
CBA, CMAR, CPAR, C4.5, FOIL, PART, PRM, RCAR, and RIPPER to build associative classifiers.
Hahsler et al (2019) <doi:10.32614/RJ-2019-048>.
Author: Michael Hahsler [aut, cre, cph] ,
Ian Johnson [aut, cph],
Tyler Giallanza [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesCBA versions 1.2.7 dated 2024-05-15 and 1.2.8 dated 2025-07-17
DESCRIPTION | 16 ++++++++-------- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/CBA.R | 2 +- README.md | 7 ++++--- build/partial.rdb |binary man/RWeka_CBA.Rd | 6 +++--- man/arulesCBA-package.Rd | 2 +- tests/testthat/test-classifiers.R | 1 + 9 files changed, 31 insertions(+), 24 deletions(-)
Title: Interface to 'Travel Time' API
Description: 'Travel Time' API <https://docs.traveltime.com/api/overview/introduction> helps users find locations by journey time rather than using ‘as the crow flies’ distance.
Time-based searching gives users more opportunities for personalisation and delivers a more relevant search.
Author: TravelTime [aut, cre]
Maintainer: TravelTime <frontend@traveltime.com>
Diff between traveltimeR versions 1.2.1 dated 2024-05-09 and 1.3.1 dated 2025-07-17
DESCRIPTION | 6 +- MD5 | 15 +++-- R/time_filter_fast_proto.R | 21 ++++++-- R/utils.R | 30 +++++++++-- R/zzz.R | 8 ++- inst/proto/RequestsCommon.proto |only inst/proto/TimeFilterFastRequest.proto | 81 +++++++++----------------------- inst/proto/TimeFilterFastResponse.proto | 42 +++++++++++----- man/time_filter_fast_proto.Rd | 9 ++- 9 files changed, 117 insertions(+), 95 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.1-4 dated 2025-05-15 and 3.1-5 dated 2025-07-17
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS | 6 ++++++ R/utilarg.R | 16 +++++++++++++++- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/macros/defns.Rd | 25 +++++++++++++++---------- man/spatstat.utils-internal.Rd | 2 ++ 9 files changed, 53 insertions(+), 23 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Bias Correction Methods for Models Using Synthetic Data
Description: Implements three bias-correction techniques from Battaglia et al. (2025 <doi:10.48550/arXiv.2402.15585>) to improve inference in regression models with covariates generated by AI or machine learning.
Author: Konrad Kurczynski [aut, cre],
Timothy Christensen [aut]
Maintainer: Konrad Kurczynski <konrad.kurczynski@yale.edu>
Diff between MLBC versions 0.2.1 dated 2025-06-04 and 0.2.2 dated 2025-07-17
DESCRIPTION | 8 - MD5 | 12 - R/data.R | 3 R/s3_methods.R | 2 README.md | 364 +++++++++++++------------------------------------------ data/SD_data.rda |binary man/SD_data.Rd | 3 7 files changed, 103 insertions(+), 289 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate
generation, and method-of-moments parameter-estimation functions for the
Delaporte distribution with parameterization based on Vose (2008)
<isbn:9780470512845>. The Delaporte is a discrete probability distribution
which can be considered the convolution of a negative binomial distribution
with a Poisson distribution. Alternatively, it can be considered a counting
distribution with both Poisson and negative binomial components. It has been
studied in actuarial science as a frequency distribution which has more
variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 8.4.1 dated 2024-06-17 and 8.4.2 dated 2025-07-17
DESCRIPTION | 11 +++-- MD5 | 28 +++++++------- NAMESPACE | 2 - R/Delaporte.R | 66 +++++++++++++++------------------- R/omp.R | 3 + R/zzz.R | 15 ++++--- build/partial.rdb |binary inst/CITATION | 2 - inst/NEWS.Rd | 63 ++++++++++++++++++++++---------- inst/tinytest/test-omp.R | 3 + inst/tinytest/test-package-metadata.r | 10 +++-- inst/tinytest/test-pdelap.r | 9 +--- inst/tinytest/test-rdelap.r | 8 ++-- man/Delaporte-internal.Rd | 1 src/delaporte.f90 | 23 ++++++----- 15 files changed, 134 insertions(+), 110 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-19 2.3.2
2018-11-30 2.3.1
2013-04-16 2.3
2012-08-17 2.2
2012-07-27 2.1
Title: Nonlinear Mixed Effects Models in Population PK/PD
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'rxode2' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Anne Keunecke [ctb],
Rik Schoemaker [ctb] ,
Justin Wilkins [ctb] ,
Wenping Wang [ctb],
Mirjam Trame [ctb],
John Harrold [ctb],
Bill Denney [ctb] ,
Theodoros Papathanasiou [ctb],
Richard Hooijmaijers [ctb],
Michael Wayne Ke [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2 versions 3.0.2 dated 2025-02-19 and 4.0.0 dated 2025-07-17
nlmixr2-3.0.2/nlmixr2/R/hardReexports.R |only nlmixr2-3.0.2/nlmixr2/R/reexports.R |only nlmixr2-3.0.2/nlmixr2/R/utils.R |only nlmixr2-3.0.2/nlmixr2/man/addCwres.Rd |only nlmixr2-3.0.2/nlmixr2/man/addNpde.Rd |only nlmixr2-3.0.2/nlmixr2/man/addTable.Rd |only nlmixr2-3.0.2/nlmixr2/man/bobyqaControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/bootplot.Rd |only nlmixr2-3.0.2/nlmixr2/man/bootstrapFit.Rd |only nlmixr2-3.0.2/nlmixr2/man/foceiControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/lbfgsb3cControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/n1qn1Control.Rd |only nlmixr2-3.0.2/nlmixr2/man/newuoaControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/nlmControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/nlmeControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/nlminbControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/nlmixr2.Rd |only nlmixr2-3.0.2/nlmixr2/man/nlsControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/optimControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/preconditionFit.Rd |only nlmixr2-3.0.2/nlmixr2/man/profileFixed.Rd |only nlmixr2-3.0.2/nlmixr2/man/profileFixedSingle.Rd |only nlmixr2-3.0.2/nlmixr2/man/profileLlp.Rd |only nlmixr2-3.0.2/nlmixr2/man/reexports.Rd |only nlmixr2-3.0.2/nlmixr2/man/saemControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/setOfv.Rd |only nlmixr2-3.0.2/nlmixr2/man/tableControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/traceplot.Rd |only nlmixr2-3.0.2/nlmixr2/man/uobyqaControl.Rd |only nlmixr2-3.0.2/nlmixr2/man/vpcCens.Rd |only nlmixr2-3.0.2/nlmixr2/man/vpcCensTad.Rd |only nlmixr2-3.0.2/nlmixr2/man/vpcPlot.Rd |only nlmixr2-3.0.2/nlmixr2/man/vpcPlotTad.Rd |only nlmixr2-3.0.2/nlmixr2/man/vpcSim.Rd |only nlmixr2-4.0.0/nlmixr2/DESCRIPTION | 30 +-- nlmixr2-4.0.0/nlmixr2/MD5 | 48 +--- nlmixr2-4.0.0/nlmixr2/NAMESPACE | 186 ------------------- nlmixr2-4.0.0/nlmixr2/R/nlmixr2CheckInstall.R | 2 nlmixr2-4.0.0/nlmixr2/R/verse.R |only nlmixr2-4.0.0/nlmixr2/man/dot-nlmixr2attach.Rd |only nlmixr2-4.0.0/nlmixr2/man/nlmixr2conflicts.Rd |only nlmixr2-4.0.0/nlmixr2/man/nlmixr2deps.Rd |only nlmixr2-4.0.0/nlmixr2/man/nlmixr2packages.Rd |only nlmixr2-4.0.0/nlmixr2/man/nlmixr2update.Rd |only nlmixr2-4.0.0/nlmixr2/tests/testthat/test-ini-pipe.R | 2 45 files changed, 36 insertions(+), 232 deletions(-)
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression, Cox model, multiple-response Gaussian, and the grouped multinomial regression; see <doi:10.18637/jss.v033.i01> and <doi:10.18637/jss.v039.i05>. There are two new and important additions. The family argument can be a GLM family object, which opens the door to any programmed family (<doi:10.18637/jss.v106.i01>). This comes with a modest computational cost, so when the built-in families suffice, they should be used instead. The other novelty is the relax option, which refits each of the active sets in the path unpenalized. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the papers cited.
Author: Jerome Friedman [aut],
Trevor Hastie [aut, cre],
Rob Tibshirani [aut],
Balasubramanian Narasimhan [aut],
Kenneth Tay [aut],
Noah Simon [aut],
Junyang Qian [ctb],
James Yang [aut]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 4.1-9 dated 2025-06-02 and 4.1-10 dated 2025-07-17
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 6 ++++++ R/coef.cv.glmnet.R | 1 + R/plot.cv.glmnet.R | 15 +++++++-------- R/plot.cv.relaxed.R | 22 ++++++++++++---------- R/plot.glmnet.R | 6 ++++-- R/plot.mrelnet.R | 6 +++--- R/plot.multnet.R | 7 ++++--- R/plot.relaxed.R | 9 +++++---- R/plotCoef.R | 19 +++++++++++++------ R/predict.glmnet.R | 2 +- R/predict.multnet.R | 4 +++- inst/doc/Coxnet.pdf |binary inst/doc/glmnet.pdf |binary inst/doc/glmnetFamily.pdf |binary inst/doc/relax.pdf |binary man/plot.cv.glmnet.Rd | 8 ++++---- man/plot.glmnet.Rd | 21 +++++++++++++++++++-- 19 files changed, 104 insertions(+), 66 deletions(-)
Title: High Performance Remote File System, Database and 'Geospatial'
Access Using 'duckdb'
Description: Provides friendly wrappers for creating 'duckdb'-backed connections
to tabular datasets ('csv', parquet, etc) on local or remote file systems.
This mimics the behaviour of "open_dataset" in the 'arrow' package,
but in addition to 'S3' file system also generalizes to any list of 'http' URLs.
Author: Carl Boettiger [aut, cre] ,
Michael D. Sumner [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between duckdbfs versions 0.1.0 dated 2025-04-04 and 0.1.1 dated 2025-07-17
DESCRIPTION | 12 ++-- MD5 | 46 ++++++++++-------- NAMESPACE | 6 ++ NEWS.md | 12 ++++ R/cached_connection.R | 43 +++++++++++++++-- R/duckdb_config.R | 85 +++++++++++++++++++++++++++++++++-- R/open_dataset.R | 34 +++++++++++--- R/parse_uri.R | 49 ++++++++++++-------- R/write_dataset.R | 84 ++++++++++++++++++++++++++++++---- inst/WORDLIST | 1 man/cached_connection.Rd | 15 +++++- man/close_connection.Rd | 3 - man/duckdb_config.Rd |only man/duckdb_extensions.Rd |only man/duckdb_get_config.Rd |only man/duckdb_reset.Rd |only man/open_dataset.Rd | 14 +++++ man/to_geojson.Rd |only man/write_dataset.Rd | 6 ++ man/write_geo.Rd | 28 +++++++++-- tests/testthat.R | 3 - tests/testthat/test-config.R |only tests/testthat/test-h3.R | 12 ++++ tests/testthat/test-load_extension.R | 6 ++ tests/testthat/test-open_dataset.R | 18 +++++++ tests/testthat/test-s3_uri.R | 4 + tests/testthat/test-write_dataset.R | 76 ++++++++++++++++++++++++++++--- 27 files changed, 469 insertions(+), 88 deletions(-)