Title: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal
Surface
Description: Provides functions to run statistical analyses on
surface-based neuroimaging data, computing measures including cortical
thickness and surface area of the whole-brain and of the hippocampi.
It can make use of 'FreeSurfer', 'fMRIprep', 'XCP-D', 'HCP' and 'CAT12' preprocessed
datasets and 'HippUnfold' hippocampal segmentation outputs for a given
sample by restructuring the data values into a single file. The single
file can then be used by the package for analyses independently from
its base dataset and without need for its access.
Author: Junhong Yu [aut] ,
Charly Billaud [aut, cre]
Maintainer: Charly Billaud <charly.billaud@ntu.edu.sg>
Diff between VertexWiseR versions 1.3.2 dated 2025-06-11 and 1.4.0 dated 2025-07-29
VertexWiseR-1.3.2/VertexWiseR/R/otherfunc.R |only VertexWiseR-1.3.2/VertexWiseR/R/vertTFCE.R |only VertexWiseR-1.3.2/VertexWiseR/R/vertmixedTFCE.R |only VertexWiseR-1.3.2/VertexWiseR/R/vertwise.R |only VertexWiseR-1.3.2/VertexWiseR/inst/demo_data/model1_TFCE.rds |only VertexWiseR-1.3.2/VertexWiseR/vignettes/FINK_tstatmaps.png |only VertexWiseR-1.3.2/VertexWiseR/vignettes/SPRENG_tstatmaps.png |only VertexWiseR-1.3.2/VertexWiseR/vignettes/traj.png |only VertexWiseR-1.4.0/VertexWiseR/DESCRIPTION | 12 VertexWiseR-1.4.0/VertexWiseR/MD5 | 89 +-- VertexWiseR-1.4.0/VertexWiseR/NAMESPACE | 8 VertexWiseR-1.4.0/VertexWiseR/NEWS.md | 14 VertexWiseR-1.4.0/VertexWiseR/R/CAT12vextract.R | 2 VertexWiseR-1.4.0/VertexWiseR/R/DTSERIESvextract.R |only VertexWiseR-1.4.0/VertexWiseR/R/FSLRvextract.R | 6 VertexWiseR-1.4.0/VertexWiseR/R/RFT_vertex_analysis.R |only VertexWiseR-1.4.0/VertexWiseR/R/TFCE_vertex_analysis.R |only VertexWiseR-1.4.0/VertexWiseR/R/TFCE_vertex_analysis_mixed.R |only VertexWiseR-1.4.0/VertexWiseR/R/VWRfirstrun.R | 34 - VertexWiseR-1.4.0/VertexWiseR/R/conversion_functions.R |only VertexWiseR-1.4.0/VertexWiseR/R/decode_surf_data.R |only VertexWiseR-1.4.0/VertexWiseR/R/fs_stats.R |only VertexWiseR-1.4.0/VertexWiseR/R/getting_started.r |only VertexWiseR-1.4.0/VertexWiseR/R/other_functions.R |only VertexWiseR-1.4.0/VertexWiseR/R/plot_overlay_surf.r |only VertexWiseR-1.4.0/VertexWiseR/R/plot_surf.R | 75 ++ VertexWiseR-1.4.0/VertexWiseR/R/smooth_surf.R |only VertexWiseR-1.4.0/VertexWiseR/README.md | 289 +++++----- VertexWiseR-1.4.0/VertexWiseR/build/partial.rdb |binary VertexWiseR-1.4.0/VertexWiseR/build/vignette.rds |binary VertexWiseR-1.4.0/VertexWiseR/inst/doc/Python_troubleshooting.html | 4 VertexWiseR-1.4.0/VertexWiseR/inst/doc/VertexWiseR_Example_1.html | 94 +-- VertexWiseR-1.4.0/VertexWiseR/inst/doc/VertexWiseR_Example_2.html | 164 ++--- VertexWiseR-1.4.0/VertexWiseR/inst/doc/VertexWiseR_surface_extraction.html | 141 ++-- VertexWiseR-1.4.0/VertexWiseR/man/DTSERIESvextract.Rd |only VertexWiseR-1.4.0/VertexWiseR/man/FSLRvextract.Rd | 4 VertexWiseR-1.4.0/VertexWiseR/man/RFT_vertex_analysis.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/TFCE_threshold.Rd | 8 VertexWiseR-1.4.0/VertexWiseR/man/TFCE_vertex_analysis.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/TFCE_vertex_analysis_mixed.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/atlas_to_surf.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/decode_surf_data.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/fs5_to_fs6.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/fs6_to_fs5.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/fs_stats.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/getting_started.Rd |only VertexWiseR-1.4.0/VertexWiseR/man/plot_overlay_surf.Rd |only VertexWiseR-1.4.0/VertexWiseR/man/plot_surf.Rd | 8 VertexWiseR-1.4.0/VertexWiseR/man/smooth_surf.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/surf_to_atlas.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/man/surf_to_vol.Rd | 2 VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_Example_1.Rmd | 26 VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_Example_2.Rmd | 27 VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_plot_overlay.Rmd |only VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_plot_overlay.asis |only VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_plot_overlay.html |only VertexWiseR-1.4.0/VertexWiseR/vignettes/VertexWiseR_surface_extraction.Rmd | 115 +-- VertexWiseR-1.4.0/VertexWiseR/vignettes/references.bib | 16 58 files changed, 635 insertions(+), 523 deletions(-)
Title: Web Framework Inspired by 'Express.js'
Description: A web framework inspired by 'express.js' to build
any web service from multi-page websites to 'RESTful'
application programming interfaces.
Author: John Coene [aut, cre] ,
Opifex [fnd],
Kennedy Mwavu [ctb] ,
Julio Collazos [ctb]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between ambiorix versions 2.2.0 dated 2025-03-15 and 2.2.1 dated 2025-07-29
DESCRIPTION | 14 - MD5 | 69 ++++--- NEWS.md | 62 ++++-- R/ambiorix.R | 150 ++++++++-------- R/assertions.R | 30 +-- R/content.R | 22 +- R/cookie.R | 84 ++++----- R/docker.R | 33 ++- R/forward.R | 24 +- R/log.R | 52 ++--- R/parser.R | 10 - R/render.R | 111 ++++++------ R/request.R | 162 +++++++++-------- R/response.R | 390 +++++++++++++++++++++++++++---------------- R/route.R | 37 ++-- R/router.R | 30 +-- R/routing.R | 311 +++++++++++++++++++--------------- R/stop.R | 6 R/token.R | 6 R/utils.R | 66 ++++--- R/websocket.R | 65 +++---- README.md | 7 inst/app.R | 2 man/Routing.Rd | 4 man/Websocket.Rd | 2 man/create_dockerfile.Rd | 2 man/pre_hook.Rd | 2 tests/testthat/_snaps |only tests/testthat/render.R | 4 tests/testthat/test-app.R | 2 tests/testthat/test-basic.R | 19 +- tests/testthat/test-cookie.R | 6 tests/testthat/test-parser.R |only 33 files changed, 1008 insertions(+), 776 deletions(-)
Title: Tufte's Styles for R Markdown Documents
Description: Provides R Markdown output formats to use Tufte styles for
PDF and HTML output.
Author: Yihui Xie [aut] ,
Christophe Dervieux [ctb, cre] ,
JJ Allaire [aut],
Andrzej Oles [ctb],
Dave Liepmann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between tufte versions 0.13 dated 2023-06-22 and 0.14.0 dated 2025-07-29
DESCRIPTION | 14 - MD5 | 24 - NEWS.md | 208 +++++++-------- R/handout.R | 81 ++++- R/html.R | 125 ++++++--- R/utils.R | 14 - README.md | 4 inst/WORDLIST |only man/tufte-package.Rd | 72 ++--- man/tufte_handout.Rd | 4 tests/testthat/_snaps/new-citeproc-post-2.14.0.2/html.md | 102 +++---- tests/testthat/_snaps/new-citeproc-post-3.1.8 |only tests/testthat/helpers.R | 17 - tests/testthat/test-html.R | 42 ++- 14 files changed, 429 insertions(+), 278 deletions(-)
Title: Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Description: Convert 'Ensembl' gene identifiers from Genotype-Tissue
Expression (GTEx) data to identifiers in other annotation systems,
including 'Entrez', 'HGNC', and 'UniProt'.
Author: Nan Xiao [aut, cre] ,
Gao Wang [aut],
Lei Sun [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between grex versions 1.9 dated 2019-05-17 and 1.9.1 dated 2025-07-29
grex-1.9.1/grex/DESCRIPTION | 15 grex-1.9.1/grex/MD5 | 29 - grex-1.9.1/grex/NEWS.md | 23 - grex-1.9.1/grex/R/grex-datalist.R | 6 grex-1.9.1/grex/README.md | 24 - grex-1.9.1/grex/build/vignette.rds |binary grex-1.9.1/grex/inst/doc/grex.R | 6 grex-1.9.1/grex/inst/doc/grex.Rmd | 31 - grex-1.9.1/grex/inst/doc/grex.html | 830 +++++++++++++------------------------ grex-1.9.1/grex/man/figures |only grex-1.9.1/grex/man/gtexv6.Rd | 6 grex-1.9.1/grex/man/gtexv6p.Rd | 6 grex-1.9.1/grex/man/gtexv7.Rd | 6 grex-1.9.1/grex/vignettes/grex.Rmd | 31 - grex-1.9.1/grex/vignettes/grex.bib | 27 - grex-1.9/grex/LICENSE |only grex-1.9/grex/vignettes/custom.css |only 17 files changed, 422 insertions(+), 618 deletions(-)
Title: Black Marble Data and Statistics
Description: Geographically referenced data and statistics of nighttime lights from NASA Black Marble <https://blackmarble.gsfc.nasa.gov/>.
Author: Robert Marty [aut, cre] ,
Gabriel Stefanini Vicente [aut]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between blackmarbler versions 0.2.4 dated 2025-01-07 and 0.2.5 dated 2025-07-29
DESCRIPTION | 13 MD5 | 11 NAMESPACE | 1 R/blackmarbler.R | 665 +++++++++++++++++++++++++++++++-------------------- man/bm_extract.Rd | 3 man/bm_raster.Rd | 12 man/wget_h5_files.Rd |only 7 files changed, 437 insertions(+), 268 deletions(-)
Title: Tidy Estimation of Heterogeneous Treatment Effects
Description: Estimates heterogeneous treatment effects using tidy semantics
on experimental or observational data. Methods are based on the doubly-robust
learner of Kennedy (2023) <doi:10.1214/23-EJS2157>. You provide a simple
recipe for what machine learning algorithms to use in estimating the nuisance
functions and 'tidyhte' will take care of cross-validation, estimation, model
selection, diagnostics and construction of relevant quantities of interest about
the variability of treatment effects.
Author: Drew Dimmery [aut, cre, cph]
Maintainer: Drew Dimmery <cran@ddimmery.com>
Diff between tidyhte versions 1.0.2 dated 2023-08-14 and 1.0.4 dated 2025-07-29
tidyhte-1.0.2/tidyhte/inst/doc/methodological_details.pdf |only tidyhte-1.0.2/tidyhte/vignettes/methodological_details.html |only tidyhte-1.0.4/tidyhte/DESCRIPTION | 17 +- tidyhte-1.0.4/tidyhte/MD5 | 25 +--- tidyhte-1.0.4/tidyhte/NEWS.md | 10 + tidyhte-1.0.4/tidyhte/R/SL.glmnet.interaction.R | 2 tidyhte-1.0.4/tidyhte/README.md | 9 + tidyhte-1.0.4/tidyhte/build/partial.rdb |binary tidyhte-1.0.4/tidyhte/build/vignette.rds |binary tidyhte-1.0.4/tidyhte/inst/doc/experimental_analysis.html | 64 +++++----- tidyhte-1.0.4/tidyhte/inst/doc/methodological_details.R | 22 +-- tidyhte-1.0.4/tidyhte/inst/doc/methodological_details.html |only tidyhte-1.0.4/tidyhte/inst/doc/observational_analysis.html | 73 +++++------- tidyhte-1.0.4/tidyhte/man/predict.SL.glmnet.interaction.Rd | 2 tidyhte-1.0.4/tidyhte/man/tidyhte-package.Rd | 4 15 files changed, 122 insertions(+), 106 deletions(-)
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
Differential Equation) Gaussian Markov random field approximation to
Gaussian random fields. One common application is for spatially explicit
species distribution models (SDMs).
See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Author: Sean C. Anderson [aut, cre] ,
Eric J. Ward [aut] ,
Philina A. English [aut] ,
Lewis A. K. Barnett [aut] ,
James T. Thorson [aut, cph] ,
Joe Watson [ctb] ,
Julia Indivero [ctb] ,
Jillian C. Dunic [ctb] ,
Cole C. Monnahan [ctb, cph] ,
Mollie Brooks [ct [...truncated...]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Diff between sdmTMB versions 0.7.2 dated 2025-06-19 and 0.7.4 dated 2025-07-29
sdmTMB-0.7.2/sdmTMB/tests/testthat/test-tidy.R |only sdmTMB-0.7.4/sdmTMB/DESCRIPTION | 8 sdmTMB-0.7.4/sdmTMB/MD5 | 78 ++++---- sdmTMB-0.7.4/sdmTMB/NAMESPACE | 1 sdmTMB-0.7.4/sdmTMB/NEWS.md | 30 +++ sdmTMB-0.7.4/sdmTMB/R/check.R | 7 sdmTMB-0.7.4/sdmTMB/R/cross-val.R | 52 ++--- sdmTMB-0.7.4/sdmTMB/R/extra-optimization.R | 45 +++- sdmTMB-0.7.4/sdmTMB/R/fit.R | 27 +- sdmTMB-0.7.4/sdmTMB/R/index.R | 6 sdmTMB-0.7.4/sdmTMB/R/methods.R | 72 +++++++ sdmTMB-0.7.4/sdmTMB/R/print.R | 14 + sdmTMB-0.7.4/sdmTMB/R/project.R | 29 ++ sdmTMB-0.7.4/sdmTMB/R/tidy.R | 107 ++++++++++- sdmTMB-0.7.4/sdmTMB/R/tmb-sim.R | 21 -- sdmTMB-0.7.4/sdmTMB/R/utils.R | 4 sdmTMB-0.7.4/sdmTMB/build/partial.rdb |binary sdmTMB-0.7.4/sdmTMB/build/vignette.rds |binary sdmTMB-0.7.4/sdmTMB/man/Effect.sdmTMB.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/add_utm_columns.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/dharma_residuals.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/emmeans.sdmTMB.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/get_index.Rd | 16 - sdmTMB-0.7.4/sdmTMB/man/plot_anisotropy.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/predict.sdmTMB.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/project.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/sdmTMB.Rd | 4 sdmTMB-0.7.4/sdmTMB/man/sdmTMB_cv.Rd | 27 ++ sdmTMB-0.7.4/sdmTMB/man/sdmTMBcontrol.Rd | 5 sdmTMB-0.7.4/sdmTMB/man/set_delta_model.Rd | 2 sdmTMB-0.7.4/sdmTMB/man/simulate.sdmTMB.Rd | 5 sdmTMB-0.7.4/sdmTMB/src/sdmTMB.cpp | 6 sdmTMB-0.7.4/sdmTMB/tests/testthat/test-2-print-anisotropy.R | 6 sdmTMB-0.7.4/sdmTMB/tests/testthat/test-2-tidy.R |only sdmTMB-0.7.4/sdmTMB/tests/testthat/test-8-delta2.R | 6 sdmTMB-0.7.4/sdmTMB/tests/testthat/test-cross-validation.R | 72 +++++++ sdmTMB-0.7.4/sdmTMB/tests/testthat/test-index.R | 20 +- sdmTMB-0.7.4/sdmTMB/tests/testthat/test-random-effects.R | 3 sdmTMB-0.7.4/sdmTMB/tests/testthat/test-random-intercepts.R | 16 + sdmTMB-0.7.4/sdmTMB/tests/testthat/test-time-varying.R | 14 - sdmTMB-0.7.4/sdmTMB/tests/testthat/test-tmb-simulation.R | 71 +++++++ 41 files changed, 608 insertions(+), 180 deletions(-)
Title: Detect and Remove Outliers in Phylogenomics Datasets
Description: Analyzis and filtering of phylogenomics datasets.
It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify
what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.
Author: Damien M. de Vienne [aut] ,
Stephane Dray [aut] ,
Theo Tricou [aut] ,
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between phylter versions 0.9.11 dated 2023-08-24 and 0.9.12 dated 2025-07-29
DESCRIPTION | 27 ++++++---- MD5 | 17 +++--- R/phylter.R | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/phyltercontainer.html | 6 +- inst/doc/runphylter.R | 102 ++++++++++++++++++++--------------------- inst/doc/runphylter.html | 6 +- man/phylter.Rd | 4 - 10 files changed, 85 insertions(+), 81 deletions(-)
Title: Multiple Survival Crossing Curves Tests
Description: Tests of comparison of two or more survival curves. Allows for
comparison of more than two survival curves whether the proportional
hazards hypothesis is verified or not.
Author: Hugo MINA PASSI [aut, cre, cph],
Olayide BOUSSARI [aut]
Maintainer: Hugo MINA PASSI <hugo.minapassi@gmail.com>
Diff between MSCCT versions 1.0.0 dated 2025-07-25 and 1.0.2 dated 2025-07-29
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 30 ++++++++++++++++++++---------- tests/testthat/test-multi_rmst.R | 4 +++- tests/testthat/test-multi_ts.R | 15 +++++++++------ 5 files changed, 39 insertions(+), 24 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Automatic open data acquisition from resources of IGN
('Institut National de Information Geographique et forestiere')
(<https://www.ign.fr/>). Available datasets include various types of
raster and vector data, such as digital elevation models, state
borders, spatial databases, cadastral parcels, and more. 'happign' also
provide access to API Carto (<https://apicarto.ign.fr/api/doc/>).
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.3.3 dated 2025-03-28 and 0.3.5 dated 2025-07-29
happign-0.3.3/happign/R/get_raw_lidar.R |only happign-0.3.3/happign/inst/doc/Getting_started.Rmd |only happign-0.3.3/happign/inst/doc/Getting_started.html |only happign-0.3.3/happign/man/figures |only happign-0.3.3/happign/man/get_raw_lidar.Rd |only happign-0.3.3/happign/tests/testthat/wfs_ecql_filter/data.geopf.fr/wfs/ows-8dfae6-e3ab15-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_empty/data.geopf.fr/wfs/ows-8dfae6-b509dc-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-112f09-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-440356-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-5c7aa0-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-813088-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-b1c75a-POST.R |only happign-0.3.3/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-d8f837-POST.R |only happign-0.3.3/happign/vignettes/Getting_started.Rmd |only happign-0.3.3/happign/vignettes/Getting_started.Rmd.orig |only happign-0.3.3/happign/vignettes/unnamed-chunk-5-1.png |only happign-0.3.3/happign/vignettes/unnamed-chunk-6-1.png |only happign-0.3.3/happign/vignettes/unnamed-chunk-7-1.png |only happign-0.3.3/happign/vignettes/web_only |only happign-0.3.5/happign/DESCRIPTION | 18 - happign-0.3.5/happign/MD5 | 105 ++---- happign-0.3.5/happign/NAMESPACE | 7 happign-0.3.5/happign/NEWS.md | 23 + happign-0.3.5/happign/R/data.R | 59 +++ happign-0.3.5/happign/R/get_apicarto_cadastre.R | 64 +-- happign-0.3.5/happign/R/get_apicarto_gpu.R | 2 happign-0.3.5/happign/R/get_wfs.R | 8 happign-0.3.5/happign/R/get_wms_raster.R | 171 +++++----- happign-0.3.5/happign/R/utils.R | 40 ++ happign-0.3.5/happign/build/vignette.rds |binary happign-0.3.5/happign/data/com_2024.rda |binary happign-0.3.5/happign/data/com_2025.rda |only happign-0.3.5/happign/data/dep_2025.rda |only happign-0.3.5/happign/data/reg_2025.rda |only happign-0.3.5/happign/inst/doc/getting_started.Rmd |only happign-0.3.5/happign/inst/doc/getting_started.html |only happign-0.3.5/happign/man/com_2025.Rd |only happign-0.3.5/happign/man/dep_2025.Rd |only happign-0.3.5/happign/man/get_apicarto_cadastre.Rd | 13 happign-0.3.5/happign/man/get_apicarto_gpu.Rd | 2 happign-0.3.5/happign/man/reg_2025.Rd |only happign-0.3.5/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-454d5f.R | 19 - happign-0.3.5/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-762292.R | 19 - happign-0.3.5/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-820ece.R | 19 - happign-0.3.5/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-f46f07.R | 19 - happign-0.3.5/happign/tests/testthat/get_wfs_default_crs/data.geopf.fr/wfs/ows-866ab9.R | 24 - happign-0.3.5/happign/tests/testthat/get_wfs_default_geometry_name |only happign-0.3.5/happign/tests/testthat/test-get_apicarto_cadastre.R | 56 +-- happign-0.3.5/happign/tests/testthat/test-get_iso.R | 94 ++--- happign-0.3.5/happign/tests/testthat/test-get_wfs.R | 18 - happign-0.3.5/happign/tests/testthat/test-get_wms_raster.R | 9 happign-0.3.5/happign/tests/testthat/test-utils.R | 27 + happign-0.3.5/happign/tests/testthat/wfs_ecql_filter/data.geopf.fr/wfs/ows-866ab9.R | 24 - happign-0.3.5/happign/tests/testthat/wfs_ecql_filter/data.geopf.fr/wfs/ows-8dfae6-f5be14-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_empty/data.geopf.fr/wfs/ows-8dfae6-05084c-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-866ab9.R | 24 - happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-56ff61-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-79586b-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-b5487e-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-c07799-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-c773a3-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-8dfae6-eb50df-POST.R |only happign-0.3.5/happign/tests/testthat/wfs_intersect/data.geopf.fr/wfs/ows-d5d390.R |only happign-0.3.5/happign/vignettes/get_wfs-1.jpeg |only happign-0.3.5/happign/vignettes/get_wfs2-1.jpeg |only happign-0.3.5/happign/vignettes/get_wms_raster-1.jpeg |only happign-0.3.5/happign/vignettes/get_wmts-1.jpeg |only happign-0.3.5/happign/vignettes/getting_started.Rmd |only happign-0.3.5/happign/vignettes/precompile.R | 12 69 files changed, 496 insertions(+), 380 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Maria Jose Ginzo Villamayor [aut, com],
Manuel Antonio Novo Perez [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
Diff between FORTLS versions 1.5.3 dated 2025-06-12 and 1.6.0 dated 2025-07-29
FORTLS-1.5.3/FORTLS/R/species.classification.R |only FORTLS-1.5.3/FORTLS/inst/python/random_forest_fit.py |only FORTLS-1.5.3/FORTLS/inst/python/random_forest_sp.py |only FORTLS-1.5.3/FORTLS/man/VoxR_vox_update.Rd |only FORTLS-1.5.3/FORTLS/man/chunk_size_from_area.Rd |only FORTLS-1.5.3/FORTLS/man/datatable_grid.Rd |only FORTLS-1.5.3/FORTLS/man/geometric_features.Rd |only FORTLS-1.5.3/FORTLS/man/random.forest.fit.Rd |only FORTLS-1.5.3/FORTLS/man/random.forest.sp.Rd |only FORTLS-1.5.3/FORTLS/man/save_file_as_laz.Rd |only FORTLS-1.5.3/FORTLS/man/save_to_tiles.Rd |only FORTLS-1.5.3/FORTLS/man/species.classification.Rd |only FORTLS-1.6.0/FORTLS/DESCRIPTION | 15 FORTLS-1.6.0/FORTLS/MD5 | 62 - FORTLS-1.6.0/FORTLS/R/RcppExports.R | 8 FORTLS-1.6.0/FORTLS/R/auxiliary.functions.R | 46 FORTLS-1.6.0/FORTLS/R/geometric.features.R | 604 +++---------- FORTLS-1.6.0/FORTLS/R/globals.R | 5 FORTLS-1.6.0/FORTLS/R/install_fortls_python_deps.R |only FORTLS-1.6.0/FORTLS/R/normalize.R | 26 FORTLS-1.6.0/FORTLS/R/python.functions.R | 28 FORTLS-1.6.0/FORTLS/R/section.functions.R | 3 FORTLS-1.6.0/FORTLS/R/tree.detection.multi.scan.R | 399 +++----- FORTLS-1.6.0/FORTLS/R/tree.detection.several.plots.R | 11 FORTLS-1.6.0/FORTLS/R/tree.detection.single.scan.R | 218 ++-- FORTLS-1.6.0/FORTLS/R/zzz.R |only FORTLS-1.6.0/FORTLS/README.md | 4 FORTLS-1.6.0/FORTLS/build/partial.rdb |binary FORTLS-1.6.0/FORTLS/inst/doc/plot_design_optimization.html | 6 FORTLS-1.6.0/FORTLS/inst/doc/tree_level.html | 108 +- FORTLS-1.6.0/FORTLS/inst/python/geometric_features.py |only FORTLS-1.6.0/FORTLS/man/geometric.features.Rd | 12 FORTLS-1.6.0/FORTLS/man/geometric_features_point.Rd | 17 FORTLS-1.6.0/FORTLS/man/geometric_features_py.Rd |only FORTLS-1.6.0/FORTLS/man/install_fortls_python_deps.Rd |only FORTLS-1.6.0/FORTLS/man/subset_matrix_by_indices.Rd |only FORTLS-1.6.0/FORTLS/man/tree.detection.multi.scan.Rd | 43 FORTLS-1.6.0/FORTLS/man/tree.detection.several.plots.Rd | 48 - FORTLS-1.6.0/FORTLS/man/tree.detection.single.scan.Rd | 46 FORTLS-1.6.0/FORTLS/src/RcppExports.cpp | 26 FORTLS-1.6.0/FORTLS/src/geometric.features.cpp | 484 +++++----- 41 files changed, 944 insertions(+), 1275 deletions(-)
Title: Working with netCDF for Essential Biodiversity Variables
Description: The concept of Essential Biodiversity Variables (EBV, <https://geobon.org/ebvs/what-are-ebvs/>)
comes with a data structure based on the Network Common Data Form (netCDF).
The 'ebvcube' 'R' package provides functionality to easily create, access and
visualise this data. The EBV netCDFs can be downloaded from the EBV Data
Portal: Christian Langer/ iDiv (2020) <https://portal.geobon.org/>.
Author: Emmanuel Oceguera Conchas [aut, cre] ,
Luise Quoss [aut] ,
Nestor Fernandez [aut] ,
Christian Langer [aut] ,
Jose Valdez [aut] ,
Henrique Miguel Pereira [aut]
Maintainer: Emmanuel Oceguera Conchas <e.oceguera@idiv.de>
Diff between ebvcube versions 0.5.1 dated 2025-06-18 and 0.5.2 dated 2025-07-29
ebvcube-0.5.1/ebvcube/inst/docs/ebvcube_0.5.1.pdf |only ebvcube-0.5.2/ebvcube/DESCRIPTION | 24 ++++++++++------ ebvcube-0.5.2/ebvcube/MD5 | 14 ++++----- ebvcube-0.5.2/ebvcube/NEWS.md | 16 +++++++++- ebvcube-0.5.2/ebvcube/R/ebv_create_taxonomy.R | 33 ++++++++++++++-------- ebvcube-0.5.2/ebvcube/README.md | 30 +++++++++++++------- ebvcube-0.5.2/ebvcube/inst/docs/ebvcube_0.5.2.pdf |only ebvcube-0.5.2/ebvcube/man/ebv_create_taxonomy.Rd | 20 ++++++++----- ebvcube-0.5.2/ebvcube/man/ebvcube.Rd | 3 +- 9 files changed, 93 insertions(+), 47 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.0 dated 2025-02-13 and 1.4.1 dated 2025-07-29
DESCRIPTION | 14 + LICENSE | 2 MD5 | 126 ++++++++-------- NAMESPACE | 5 NEWS.md | 7 R/aaa_ranges.R | 21 +- R/aaa_values.R | 22 +- R/compat-vctrs-parameters.R | 56 ++++++- R/constructors.R | 4 R/dials-package.R | 2 R/encode_unit.R | 8 - R/finalize.R | 23 +-- R/grids.R | 80 ++++++---- R/misc.R | 27 ++- R/param_activation.R | 30 +++- R/param_cal_method.R |only R/param_engine_partykit.R | 5 R/param_engine_ranger.R | 7 R/param_initial_umap.R | 16 +- R/param_network.R | 5 R/param_num_breaks.R | 2 R/param_over_ratio.R | 4 R/param_prune_method.R | 14 + R/param_schedulers.R | 32 ++-- R/param_sparse_bayes_pca.R | 5 R/param_summary_stat.R | 11 + R/param_target_weight.R | 4 R/param_trees.R | 2 R/parameters.R | 58 ++++--- R/space_filling.R | 193 +++++++++++++++----------- R/zzz.R | 36 ++++ README.md | 3 build/vignette.rds |binary inst/doc/dials.R | 29 +-- inst/doc/dials.Rmd | 31 ++-- inst/doc/dials.html | 33 ++-- man/calibration.Rd |only man/dials-package.Rd | 2 man/finalize.Rd | 10 - man/grid_regular.Rd | 2 man/grid_space_filling.Rd | 22 +- man/initial_umap.Rd | 2 man/range_validate.Rd | 8 - man/rmd/rand_notes.Rmd | 2 man/rmd/rand_notes.md | 2 man/rmd/sfd_notes.Rmd | 6 man/rmd/sfd_notes.md | 6 man/value_validate.Rd | 12 - tests/testthat.R | 10 + tests/testthat/_snaps/parameters.md | 9 - tests/testthat/test-aaa_ranges.R | 27 ++- tests/testthat/test-aaa_unknown.R | 26 ++- tests/testthat/test-aaa_values.R | 88 +++++++---- tests/testthat/test-compat-dplyr-parameters.R | 6 tests/testthat/test-constructors.R | 38 +++-- tests/testthat/test-encode_unit.R | 7 tests/testthat/test-extract.R | 26 ++- tests/testthat/test-finalize.R | 13 + tests/testthat/test-grids.R | 2 tests/testthat/test-misc.R | 6 tests/testthat/test-parameters.R | 40 +++-- tests/testthat/test-params.R | 110 +++++++++++--- tests/testthat/test-space_filling.R | 74 +++++---- tests/testthat/test-type_sum.R | 1 vignettes/dials.Rmd | 31 ++-- 65 files changed, 939 insertions(+), 566 deletions(-)
Title: Tools for Modeling Bumblebee Colony Growth and Decline
Description: Bumblebee colonies grow during worker production, then
decline after switching to production of reproductive individuals
(drones and gynes). This package provides tools for modeling and
visualizing this pattern by identifying a switchpoint with a growth
rate before and a decline rate after the switchpoint. The mathematical
models fit by bumbl are described in Crone and Williams (2016)
<doi:10.1111/ele.12581>.
Author: Eric R. Scott [aut, cre]
Maintainer: Eric R. Scott <scottericr@gmail.com>
Diff between bumbl versions 1.0.3 dated 2023-03-08 and 1.0.4 dated 2025-07-29
DESCRIPTION | 39 +++++---- LICENSE |only MD5 | 23 +++-- NEWS.md | 5 + R/colony-growth.R | 2 README.md | 33 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/bumbl.R | 2 inst/doc/bumbl.html | 201 +++++++++++++++++++++++++-------------------------- man/brkpt.Rd | 2 man/bumbl-package.Rd | 1 13 files changed, 159 insertions(+), 151 deletions(-)
Title: Significance Tests for Palaeoenvironmental Reconstructions
Description: Several tests of quantitative palaeoenvironmental reconstructions
from microfossil assemblages, including the null model tests of the
statistically significant of reconstructions developed by Telford and Birks
(2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of
spatial autocorrelation on transfer function model performance using methods
from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and
Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with
generalized mixed-effect regression from Heegaard et al (2005)
<doi:10.1191/0959683605hl836rr> are also included.
Author: Richard Telford [aut, cre, cph],
Mathias Trachsel [ctb]
Maintainer: Richard Telford <Richard.Telford@uib.no>
Diff between palaeoSig versions 2.1-3 dated 2023-03-10 and 2.1-4 dated 2025-07-29
palaeoSig-2.1-3/palaeoSig/man/agelme.rd |only palaeoSig-2.1-4/palaeoSig/DESCRIPTION | 10 palaeoSig-2.1-4/palaeoSig/MD5 | 89 +- palaeoSig-2.1-4/palaeoSig/NAMESPACE | 1 palaeoSig-2.1-4/palaeoSig/NEWS.md | 4 palaeoSig-2.1-4/palaeoSig/R/1_randomTF.R | 6 palaeoSig-2.1-4/palaeoSig/R/Hill.N2.core.R | 24 palaeoSig-2.1-4/palaeoSig/R/agedepth.2015.r | 106 ++ palaeoSig-2.1-4/palaeoSig/R/anamorph.R | 28 palaeoSig-2.1-4/palaeoSig/R/centipede.plot.r | 4 palaeoSig-2.1-4/palaeoSig/R/coverage.plot.r | 4 palaeoSig-2.1-4/palaeoSig/R/data.R | 11 palaeoSig-2.1-4/palaeoSig/R/jointsig.r | 8 palaeoSig-2.1-4/palaeoSig/R/multi.mat.R | 30 palaeoSig-2.1-4/palaeoSig/R/obs.cor.R | 44 - palaeoSig-2.1-4/palaeoSig/R/palaeoSig-package.R |only palaeoSig-2.1-4/palaeoSig/R/plot.palaeoSig.R | 4 palaeoSig-2.1-4/palaeoSig/R/rne.R | 10 palaeoSig-2.1-4/palaeoSig/R/simulate_species.r | 253 ++++++ palaeoSig-2.1-4/palaeoSig/build/partial.rdb |binary palaeoSig-2.1-4/palaeoSig/build/vignette.rds |binary palaeoSig-2.1-4/palaeoSig/inst/doc/h-block-crossvalidation.R | 21 palaeoSig-2.1-4/palaeoSig/inst/doc/h-block-crossvalidation.Rmd | 14 palaeoSig-2.1-4/palaeoSig/inst/doc/h-block-crossvalidation.html | 375 +++++----- palaeoSig-2.1-4/palaeoSig/inst/doc/randomTF-spatial.R | 10 palaeoSig-2.1-4/palaeoSig/inst/doc/randomTF-spatial.Rmd | 4 palaeoSig-2.1-4/palaeoSig/inst/doc/randomTF-spatial.html | 210 ++--- palaeoSig-2.1-4/palaeoSig/man/Atlantic.Rd | 6 palaeoSig-2.1-4/palaeoSig/man/Hill.N2.core.Rd | 50 - palaeoSig-2.1-4/palaeoSig/man/STOR.Rd | 3 palaeoSig-2.1-4/palaeoSig/man/abundances.Rd | 82 +- palaeoSig-2.1-4/palaeoSig/man/agelme.Rd |only palaeoSig-2.1-4/palaeoSig/man/anamorph.Rd | 47 - palaeoSig-2.1-4/palaeoSig/man/cor.mat.fun.Rd | 62 - palaeoSig-2.1-4/palaeoSig/man/jointsig.Rd | 3 palaeoSig-2.1-4/palaeoSig/man/make.env.Rd | 89 +- palaeoSig-2.1-4/palaeoSig/man/make.set.Rd | 142 +-- palaeoSig-2.1-4/palaeoSig/man/multi.mat.Rd | 64 + palaeoSig-2.1-4/palaeoSig/man/obs.cor.Rd | 32 palaeoSig-2.1-4/palaeoSig/man/palaeoSig-package.Rd | 85 +- palaeoSig-2.1-4/palaeoSig/man/predict.agelme.Rd | 77 +- palaeoSig-2.1-4/palaeoSig/man/randomTF.Rd | 4 palaeoSig-2.1-4/palaeoSig/man/rne.Rd | 5 palaeoSig-2.1-4/palaeoSig/man/species.Rd | 210 +++-- palaeoSig-2.1-4/palaeoSig/tests/testthat/test-test-randomTF.R | 14 palaeoSig-2.1-4/palaeoSig/vignettes/h-block-crossvalidation.Rmd | 14 palaeoSig-2.1-4/palaeoSig/vignettes/randomTF-spatial.Rmd | 4 47 files changed, 1394 insertions(+), 869 deletions(-)
Title: Agnostic, Idiomatic Data Filter Module for Shiny
Description: When added to an existing shiny app, users may subset any
developer-chosen R data.frame on the fly. That is, users are empowered to
slice & dice data by applying multiple (order specific) filters using the
AND (&) operator between each, and getting real-time updates on the number
of rows effected/available along the way. Thus, any downstream processes
that leverage this data source (like tables, plots, or statistical procedures)
will re-render after new filters are applied. The shiny module’s user interface has
a 'minimalist' aesthetic so that the focus can be on the data &
other visuals. In addition to returning a reactive (filtered) data.frame,
'IDEAFilter' as also returns 'dplyr' filter statements used to actually slice
the data.
Author: Aaron Clark [aut, cre] ,
Jeff Thompson [aut],
Doug Kelkhoff [ctb, cph] ,
Maya Gans [ctb],
SortableJS contributors [ctb] ,
Biogen [cph]
Maintainer: Aaron Clark <clark.aaronchris@gmail.com>
Diff between IDEAFilter versions 0.2.0 dated 2024-04-15 and 0.2.1 dated 2025-07-29
IDEAFilter-0.2.0/IDEAFilter/LICENSE.note |only IDEAFilter-0.2.1/IDEAFilter/DESCRIPTION | 10 IDEAFilter-0.2.1/IDEAFilter/LICENSE | 4 IDEAFilter-0.2.1/IDEAFilter/MD5 | 175 -- IDEAFilter-0.2.1/IDEAFilter/NAMESPACE | 180 +- IDEAFilter-0.2.1/IDEAFilter/NEWS.md | 69 IDEAFilter-0.2.1/IDEAFilter/R/IDEAFilter.R | 620 +++---- IDEAFilter-0.2.1/IDEAFilter/R/IDEAFilter_item.R | 446 ++--- IDEAFilter-0.2.1/IDEAFilter/R/selectInput_column.R | 188 +- IDEAFilter-0.2.1/IDEAFilter/R/selectInput_proportion.R | 200 +- IDEAFilter-0.2.1/IDEAFilter/R/shinyDataFilter_df.R | 26 IDEAFilter-0.2.1/IDEAFilter/R/shiny_data_filter.R | 550 +++--- IDEAFilter-0.2.1/IDEAFilter/R/shiny_data_filter_item.R | 422 ++-- IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter.R | 290 +-- IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_NULL.R | 46 IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_character.R | 132 - IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_date.R | 174 - IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_datetime.R | 222 +- IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_factor.R | 34 IDEAFilter-0.2.1/IDEAFilter/R/shiny_vector_filter_factor_few.R | 162 - 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IDEAFilter-0.2.1/IDEAFilter/inst/www/shared/Sortable.min.js | 4 IDEAFilter-0.2.1/IDEAFilter/man/IDEAFilter.Rd | 188 +- IDEAFilter-0.2.1/IDEAFilter/man/IDEAFilter_item.Rd | 100 - IDEAFilter-0.2.1/IDEAFilter/man/IDEAFilter_item_ui.Rd | 38 IDEAFilter-0.2.1/IDEAFilter/man/IDEAFilter_ui.Rd | 152 - IDEAFilter-0.2.1/IDEAFilter/man/columnSelectInput.Rd | 82 IDEAFilter-0.2.1/IDEAFilter/man/filter_log.Rd | 46 IDEAFilter-0.2.1/IDEAFilter/man/filter_log_ns_style.Rd | 30 IDEAFilter-0.2.1/IDEAFilter/man/filter_log_style.Rd | 30 IDEAFilter-0.2.1/IDEAFilter/man/getInitializationCode.shinyDataFilter_df.Rd | 42 IDEAFilter-0.2.1/IDEAFilter/man/get_dataFilter_class.Rd | 40 IDEAFilter-0.2.1/IDEAFilter/man/is.empty.Rd | 36 IDEAFilter-0.2.1/IDEAFilter/man/nullor.Rd | 36 IDEAFilter-0.2.1/IDEAFilter/man/proportionSelectInput.Rd | 82 IDEAFilter-0.2.1/IDEAFilter/man/shiny_data_filter.Rd | 180 +- IDEAFilter-0.2.1/IDEAFilter/man/shiny_data_filter_item.Rd | 86 IDEAFilter-0.2.1/IDEAFilter/man/shiny_data_filter_item_ui.Rd | 50 IDEAFilter-0.2.1/IDEAFilter/man/shiny_data_filter_ui.Rd | 150 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter.Rd | 136 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter_factor_few.Rd | 98 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter_factor_many.Rd | 98 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter_numeric_few.Rd | 96 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter_numeric_many.Rd | 96 - IDEAFilter-0.2.1/IDEAFilter/man/shiny_vector_filter_ui.Rd | 44 IDEAFilter-0.2.1/IDEAFilter/man/shinytest_path.Rd | 36 IDEAFilter-0.2.1/IDEAFilter/man/strip_leading_ws.Rd | 40 IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_IDEAFilter/app.R | 60 IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_IDEAFilter_item/app.R | 50 IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_data_types/app.R | 58 IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_html_scripts/app.R | 18 IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_preselection/app.R | 94 - IDEAFilter-0.2.1/IDEAFilter/tests/shinytest/shinytest_reactive_data/app.R | 92 - 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IDEAFilter-0.2.1/IDEAFilter/tests/testthat/test_shiny_vector_filter_character.R | 120 - IDEAFilter-0.2.1/IDEAFilter/tests/testthat/test_shiny_vector_filter_factor.R | 196 +- IDEAFilter-0.2.1/IDEAFilter/tests/testthat/test_shiny_vector_filter_numeric.R | 128 - IDEAFilter-0.2.1/IDEAFilter/tests/testthat/test_shiny_vector_filter_unknown.R | 38 IDEAFilter-0.2.1/IDEAFilter/tests/testthat/test_utils.R | 14 IDEAFilter-0.2.1/IDEAFilter/vignettes/IDEAFilter.Rmd | 160 - 89 files changed, 5420 insertions(+), 5414 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb],
R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 4.2-2 dated 2022-07-13 and 4.2-4 dated 2025-07-29
DESCRIPTION | 16 MD5 | 47 +- NAMESPACE | 10 NEWS | 18 + R/Effect.R | 5 R/plot-methods.R | 9 R/plot.effpoly.R | 11 R/summary-print-methods.R | 475 ++++++++++++++-------------- R/utilities.R | 34 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 14 inst/doc/functions-supported-by-effects.pdf |binary inst/doc/partial-residuals.pdf |binary inst/doc/predictor-effects-gallery.R | 44 ++ inst/doc/predictor-effects-gallery.Rnw | 62 +++ inst/doc/predictor-effects-gallery.pdf |binary man/LegacyArguments.Rd | 4 man/effCoef.Rd | 2 man/effect.Rd | 32 + man/effects-package.Rd | 2 man/effectsTheme.Rd | 8 man/plot.effect.Rd | 58 ++- vignettes/chicago.bst |only vignettes/predictor-effects-gallery.Rnw | 62 +++ 25 files changed, 586 insertions(+), 327 deletions(-)
Title: Efficient and Accessible Discrete Choice Experiments
Description: Design, conduct and analyze 'DCEs' from a virtual interface in shiny. Reference: Perez-Troncoso, D. (2022) <https://github.com/danielpereztr/DCEtool>.
Author: Daniel Perez Troncoso [aut, cre]
Maintainer: Daniel Perez Troncoso <dpereztr@gmail.com>
Diff between DCEtool versions 1.2.0 dated 2025-07-21 and 1.2.1 dated 2025-07-29
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- R/app.R | 32 ++++++++++++++++++++++++++------ inst/doc/DCEtool.html | 2 +- 4 files changed, 35 insertions(+), 16 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax is concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.10.0 dated 2025-07-03 and 0.11.0 dated 2025-07-29
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Title: Clustering Algorithm for Data Integration and Disease Subtyping
Description: Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) <DOI: 10.1093/bioinformatics/bty1049>, Nguyen et al. (2017)<DOI: 10.1101/gr.215129.116>, Nguyen et al. (2021)<DOI: 10.3389/fonc.2021.725133>).
Author: Hung Nguyen [aut],
Bang Tran [aut],
Duc Tran [aut],
Tin Nguyen [aut],
Van-Dung Pham [cre]
Maintainer: Van-Dung Pham <dvp0001@auburn.edu>
Diff between PINSPlus versions 2.0.7 dated 2024-04-05 and 2.0.9 dated 2025-07-29
DESCRIPTION | 34 +++- MD5 | 12 - R/perturbation-clustering.R | 2 build/vignette.rds |binary inst/doc/PINSPlus.R | 322 +++++++++++++++++++++--------------------- inst/doc/PINSPlus.html | 16 +- man/PerturbationClustering.Rd | 2 7 files changed, 204 insertions(+), 184 deletions(-)
Title: Helper Functions for Org Files
Description: Helper functions for Org files (<https://orgmode.org/>):
a generic function 'toOrg' for transforming R objects into Org
markup (most useful for data frames; there are also methods for
Dates/POSIXt) and a function to read Org tables into data frames.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between orgutils versions 0.5-0 dated 2024-01-31 and 0.5-1 dated 2025-07-29
orgutils-0.5-0/orgutils/inst/unitTests |only orgutils-0.5-0/orgutils/vignettes/auto |only orgutils-0.5-1/orgutils/DESCRIPTION | 17 +- orgutils-0.5-1/orgutils/MD5 | 51 +++--- orgutils-0.5-1/orgutils/NAMESPACE | 1 orgutils-0.5-1/orgutils/NEWS | 11 + orgutils-0.5-1/orgutils/R/toOrg.R | 128 +++++++++++++---- orgutils-0.5-1/orgutils/build/vignette.rds |binary orgutils-0.5-1/orgutils/inst/doc/orgutils_examples.pdf |binary orgutils-0.5-1/orgutils/inst/tinytest |only orgutils-0.5-1/orgutils/man/readOrg.Rd | 113 +++++++++------ orgutils-0.5-1/orgutils/man/toOrg.Rd | 2 orgutils-0.5-1/orgutils/tests |only 13 files changed, 221 insertions(+), 102 deletions(-)
Title: Multi-Omic Differentially Expressed Gene-Gene Pairs
Description: Performs multi-omic differential network
analysis by revealing differential interactions between molecular entities
(genes, proteins, transcription factors, or other biomolecules) across the
omic datasets provided.
For each omic dataset, a differential network is constructed where
links represent statistically significant differential interactions between
entities. These networks are then integrated into a comprehensive visualization
using distinct colors to distinguish interactions from different omic layers.
This unified display allows interactive exploration of cross-omic
patterns, such as differential interactions present at both transcript and
protein levels. For each link, users can access differential statistical
significance metrics (p values or adjusted p values, calculated via robust or
traditional linear regression with interaction term) and differential regression
plots.
The methods implemented in this package are described in Sciacca et al. (2023)
<doi:10.1093/bioinform [...truncated...]
Author: Elisabetta Sciacca [aut, cre, cph] ,
Myles Lewis [ctb]
Maintainer: Elisabetta Sciacca <e.sciacca@qmul.ac.uk>
Diff between multiDEGGs versions 1.0.0 dated 2025-06-05 and 1.1.0 dated 2025-07-29
DESCRIPTION | 12 MD5 | 36 + NAMESPACE | 5 NEWS.md | 17 R/core_functions.R | 10 R/feature_selection_for_ML.R |only R/plotting_functions.R | 34 - README.md | 39 +- data/synthetic_metadata.rda |binary inst/doc/multiDEGGs_vignette.R | 166 ++++---- inst/doc/multiDEGGs_vignette.Rmd | 464 ++++++++++++++---------- inst/doc/multiDEGGs_vignette.html | 580 +++++++++++++++++++----------- man/cat_parallel.Rd |only man/dot-predict_multiDEGGs.Rd |only man/figures |only man/get_diffNetworks.Rd | 5 man/multiDEGGs_combined_filter.Rd |only man/multiDEGGs_filter.Rd |only man/predict.multiDEGGs_filter.Rd |only man/predict.multiDEGGs_filter_combined.Rd |only tests/testthat/test-ML_functions.R |only tests/testthat/test-core_functions.R | 12 vignettes/multiDEGGs_vignette.Rmd | 464 ++++++++++++++---------- vignettes/plot_regressions.png |only 24 files changed, 1113 insertions(+), 731 deletions(-)
Title: Higher Level 'API' for 'torch'
Description: A high level interface for 'torch' providing utilities to reduce the
the amount of code needed for common tasks, abstract away torch details and
make the same code work on both the 'CPU' and 'GPU'. It's flexible enough to
support expressing a large range of models. It's heavily inspired by 'fastai' by
Howard et al. (2020) <doi:10.48550/arXiv.2002.04688>, 'Keras' by Chollet et al. (2015) and
'PyTorch Lightning' by Falcon et al. (2019) <doi:10.5281/zenodo.3828935>.
Author: Daniel Falbel [aut, cre, cph],
Christophe Regouby [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between luz versions 0.4.0 dated 2023-04-17 and 0.5.0 dated 2025-07-29
luz-0.4.0/luz/vignettes/examples |only luz-0.5.0/luz/DESCRIPTION | 20 luz-0.5.0/luz/MD5 | 136 +-- luz-0.5.0/luz/NAMESPACE | 2 luz-0.5.0/luz/NEWS.md | 12 luz-0.5.0/luz/R/accelerator.R | 2 luz-0.5.0/luz/R/as_dataloader.R | 5 luz-0.5.0/luz/R/callbacks-amp.R |only luz-0.5.0/luz/R/callbacks-mixup.R | 2 luz-0.5.0/luz/R/callbacks-monitor-metrics.R | 10 luz-0.5.0/luz/R/callbacks-resume.R | 4 luz-0.5.0/luz/R/callbacks.R | 34 luz-0.5.0/luz/R/context.R | 17 luz-0.5.0/luz/R/module.R | 15 luz-0.5.0/luz/R/serialization.R | 10 luz-0.5.0/luz/R/utils.R | 2 luz-0.5.0/luz/build/vignette.rds |binary luz-0.5.0/luz/inst/doc/accelerator.R | 2 luz-0.5.0/luz/inst/doc/accelerator.html | 67 - luz-0.5.0/luz/inst/doc/custom-loop.R | 194 ++--- luz-0.5.0/luz/inst/doc/custom-loop.Rmd | 5 luz-0.5.0/luz/inst/doc/custom-loop.html | 197 ++--- luz-0.5.0/luz/inst/doc/get-started.R | 346 +++++----- luz-0.5.0/luz/inst/doc/get-started.html | 235 +++--- luz-0.5.0/luz/inst/po |only luz-0.5.0/luz/man/as_dataloader.Rd | 5 luz-0.5.0/luz/man/context.Rd | 19 luz-0.5.0/luz/man/evaluate.Rd | 10 luz-0.5.0/luz/man/fit.luz_module_generator.Rd | 2 luz-0.5.0/luz/man/luz_callback.Rd | 5 luz-0.5.0/luz/man/luz_callback_auto_resume.Rd | 5 luz-0.5.0/luz/man/luz_callback_csv_logger.Rd | 7 luz-0.5.0/luz/man/luz_callback_early_stopping.Rd | 7 luz-0.5.0/luz/man/luz_callback_interrupt.Rd | 5 luz-0.5.0/luz/man/luz_callback_keep_best_model.Rd | 5 luz-0.5.0/luz/man/luz_callback_lr_scheduler.Rd | 5 luz-0.5.0/luz/man/luz_callback_metrics.Rd | 5 luz-0.5.0/luz/man/luz_callback_mixed_precision.Rd |only luz-0.5.0/luz/man/luz_callback_mixup.Rd | 5 luz-0.5.0/luz/man/luz_callback_model_checkpoint.Rd | 5 luz-0.5.0/luz/man/luz_callback_profile.Rd | 5 luz-0.5.0/luz/man/luz_callback_progress.Rd | 5 luz-0.5.0/luz/man/luz_callback_resume_from_checkpoint.Rd | 7 luz-0.5.0/luz/man/luz_callback_train_valid.Rd | 7 luz-0.5.0/luz/man/luz_load.Rd | 2 luz-0.5.0/luz/man/luz_load_checkpoint.Rd | 2 luz-0.5.0/luz/man/luz_load_model_weights.Rd | 2 luz-0.5.0/luz/man/luz_metric.Rd | 2 luz-0.5.0/luz/man/luz_metric_accuracy.Rd | 6 luz-0.5.0/luz/man/luz_metric_binary_accuracy.Rd | 4 luz-0.5.0/luz/man/luz_metric_binary_accuracy_with_logits.Rd | 4 luz-0.5.0/luz/man/luz_metric_binary_auroc.Rd | 6 luz-0.5.0/luz/man/luz_metric_mae.Rd | 6 luz-0.5.0/luz/man/luz_metric_mse.Rd | 6 luz-0.5.0/luz/man/luz_metric_multiclass_auroc.Rd | 6 luz-0.5.0/luz/man/luz_metric_rmse.Rd | 6 luz-0.5.0/luz/man/luz_save.Rd | 2 luz-0.5.0/luz/man/predict.luz_module_fitted.Rd | 2 luz-0.5.0/luz/man/rmd/callbacks.Rmd | 2 luz-0.5.0/luz/man/setup.Rd | 2 luz-0.5.0/luz/po |only luz-0.5.0/luz/tests/testthat/_snaps/callbacks-resume.md |only luz-0.5.0/luz/tests/testthat/_snaps/callbacks.md | 58 + luz-0.5.0/luz/tests/testthat/_snaps/module-plot/ggplot2-histogram.svg | 2 luz-0.5.0/luz/tests/testthat/test-callbacks-amp.R |only luz-0.5.0/luz/tests/testthat/test-callbacks-resume.R | 55 + luz-0.5.0/luz/tests/testthat/test-callbacks.R | 79 ++ luz-0.5.0/luz/vignettes/custom-loop.Rmd | 5 68 files changed, 976 insertions(+), 714 deletions(-)
Title: Generate Analysis Results Programmes Using ARS Metadata
Description: Analysis Results Standard (ARS), a foundational standard by CDISC
(Clinical Data Interchange Standards Consortium), provides a logical
data model for metadata describing all components to calculate Analysis Results.
<https://www.cdisc.org/standards/foundational/analysis-results-standard>
Using 'siera' package, ARS metadata is ingested (JSON or Excel format),
producing programmes to generate Analysis Results Datasets (ARDs).
Author: Malan Bosman [aut, cre],
Clymb Clinical [cph, fnd]
Maintainer: Malan Bosman <malanbos@gmail.com>
Diff between siera versions 0.4.0 dated 2025-07-18 and 0.5.0 dated 2025-07-29
siera-0.4.0/siera/inst/doc/Read_Excel.R |only siera-0.4.0/siera/inst/doc/Read_Excel.Rmd |only siera-0.4.0/siera/inst/doc/Read_Excel.html |only siera-0.4.0/siera/vignettes/Read_Excel.Rmd |only siera-0.5.0/siera/DESCRIPTION | 8 siera-0.5.0/siera/MD5 | 26 siera-0.5.0/siera/NEWS.md | 4 siera-0.5.0/siera/R/readARS.R | 2459 ++++++---- siera-0.5.0/siera/R/readARS_xl.R | 1964 ++++++- siera-0.5.0/siera/README.md | 127 siera-0.5.0/siera/build/vignette.rds |binary siera-0.5.0/siera/inst/doc/Getting_started.R |only siera-0.5.0/siera/inst/doc/Getting_started.Rmd |only siera-0.5.0/siera/inst/doc/Getting_started.html |only siera-0.5.0/siera/inst/extdata/Common_Safety_Displays_cards.xlsx |binary siera-0.5.0/siera/man/readARS.Rd | 34 siera-0.5.0/siera/man/readARS_xl.Rd | 104 siera-0.5.0/siera/vignettes/Getting_started.Rmd |only 18 files changed, 3299 insertions(+), 1427 deletions(-)
Title: Predictor-Assisted Graphical Models under Error-in-Variables
Description: We consider the network structure detection for variables Y with auxiliary variables X accommodated, which are possibly subject to measurement error. The following three functions are designed to address various structures by different methods : one is NP_Graph() that is used for handling the nonlinear relationship between the responses and the covariates, another is Joint_Gaussian() that is used for correction in linear regression models via the Gaussian maximum likelihood, and the other Cond_Gaussian() is for linear regression models via conditional likelihood function.
Author: Wan-Yi Chang [aut, cre],
Li-Pang Chen [aut]
Maintainer: Wan-Yi Chang <jessica306a@gmail.com>
Diff between PAGE versions 0.1.0 dated 2025-07-21 and 0.2.0 dated 2025-07-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Con_Gaussian.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Predict Fish Hatch and Emergence Timing
Description: Predict hatch and emergence timing for a wide range of wild
fishes using the effective value framework (Sparks et al., (2019)
<DOI:10.1139/cjfas-2017-0468>). 'hatchR' offers users access to
established phenological models and the flexibility to incorporate
custom parameterizations using external datasets.
Author: Bryan M. Maitland [aut, cre] ,
Morgan M. Sparks [aut, cph] ,
Eli Felts [ctb] ,
Allison Swartz [ctb],
Paul Frater [ctb]
Maintainer: Bryan M. Maitland <bryan.maitland@usda.gov>
Diff between hatchR versions 0.3.2 dated 2025-03-05 and 1.0.1 dated 2025-07-29
DESCRIPTION | 57 +++--- MD5 | 98 ++++++---- NAMESPACE | 25 +- NEWS.md | 61 ++++-- R/plot_phenology.R | 69 ++++--- R/predict_phenology.R | 48 ++--- R/predict_spawn.R |only README.md | 76 +++----- build/vignette.rds |binary inst/CITATION | 22 +- inst/doc/Advanced_plotting.R | 26 +- inst/doc/Advanced_plotting.Rmd | 30 +-- inst/doc/Advanced_plotting.html | 30 +-- inst/doc/Introduction.html | 6 inst/doc/Model_bibliography.Rmd | 2 inst/doc/Non-fish.R |only inst/doc/Non-fish.Rmd |only inst/doc/Non-fish.html |only inst/doc/Parameterize_models.R | 12 - inst/doc/Parameterize_models.Rmd | 12 - inst/doc/Parameterize_models.html | 14 - inst/doc/Predict_phenology_advanced.R | 6 inst/doc/Predict_phenology_advanced.Rmd | 8 inst/doc/Predict_phenology_advanced.html | 32 +-- inst/doc/Predict_phenology_basic.R | 32 +-- inst/doc/Predict_phenology_basic.Rmd | 42 ++-- inst/doc/Predict_phenology_basic.html | 30 +-- inst/doc/Predict_phenology_nested.R | 51 ++--- inst/doc/Predict_phenology_nested.Rmd | 56 +++--- inst/doc/Predict_phenology_nested.html | 213 ++++++++++++----------- inst/doc/Predict_spawning.R |only inst/doc/Predict_spawning.Rmd |only inst/doc/Predict_spawning.html |only inst/doc/Shiny_app.R |only inst/doc/Shiny_app.Rmd |only inst/doc/Shiny_app.html |only inst/references.bib | 274 +++++++++++++++++++++++++++++- man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/hatchR-package.Rd | 2 man/plot_phenology.Rd | 4 man/predict_phenology.Rd | 2 man/predict_spawn.Rd |only tests/testthat/test-plot_check_temp.R | 14 - tests/testthat/test-plot_phenology.R | 8 tests/testthat/test-predict_phenology.R | 4 tests/testthat/test-predict_spawn.R |only vignettes/Advanced_plotting.Rmd | 30 +-- vignettes/Model_bibliography.Rmd | 2 vignettes/Non-fish.Rmd |only vignettes/Parameterize_models.Rmd | 12 - vignettes/Predict_phenology_advanced.Rmd | 8 vignettes/Predict_phenology_basic.Rmd | 42 ++-- vignettes/Predict_phenology_nested.Rmd | 56 +++--- vignettes/Predict_spawning.Rmd |only vignettes/Shiny_app.Rmd |only vignettes/img/Rstudio_app.png |only vignettes/img/Shiny_dir.png |only vignettes/img/Shiny_download.png |only 59 files changed, 928 insertions(+), 588 deletions(-)
Title: Extracts the Backbone from Graphs
Description: An implementation of methods for extracting an unweighted unipartite
graph (i.e. a backbone) from an unweighted unipartite graph, a weighted unipartite
graph, the projection of an unweighted bipartite graph, or the projection
of a weighted bipartite graph (Neal, 2022 <doi:10.1371/journal.pone.0269137>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 2.1.4 dated 2024-05-09 and 2.1.5 dated 2025-07-29
DESCRIPTION | 11 ++-- MD5 | 86 ++++++++++++++++++------------------ NEWS.md | 1 R/backbone.R | 2 R/backbone.suggest.R | 2 R/disparity.R | 2 R/fdsm.R | 2 R/fixedcol.R | 2 R/fixedfill.R | 2 R/fixedrow.R | 2 R/global.R | 2 R/lans.R | 2 R/mlf.R | 2 R/osdsm.R | 2 R/sdsm.R | 2 R/sparsify.R | 22 ++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/backbone.Rmd | 2 inst/doc/backbone.html | 54 ++++++++++++---------- man/backbone.Rd | 20 ++++++++ man/backbone.suggest.Rd | 2 man/disparity.Rd | 2 man/fdsm.Rd | 2 man/fixedcol.Rd | 2 man/fixedfill.Rd | 2 man/fixedrow.Rd | 2 man/global.Rd | 2 man/lans.Rd | 2 man/mlf.Rd | 2 man/osdsm.Rd | 2 man/sdsm.Rd | 2 man/sparsify.Rd | 2 man/sparsify.with.geometric.Rd | 2 man/sparsify.with.gspar.Rd | 2 man/sparsify.with.hypergeometric.Rd | 2 man/sparsify.with.jaccard.Rd | 2 man/sparsify.with.localdegree.Rd | 2 man/sparsify.with.lspar.Rd | 2 man/sparsify.with.meetmin.Rd | 2 man/sparsify.with.quadrilateral.Rd | 2 man/sparsify.with.simmelian.Rd | 2 man/sparsify.with.skeleton.Rd | 2 vignettes/backbone.Rmd | 2 44 files changed, 146 insertions(+), 120 deletions(-)
Title: Interface to the arXiv API
Description: An interface to the API for 'arXiv',
a repository of electronic preprints for
computer science, mathematics, physics, quantitative biology,
quantitative finance, and statistics.
Author: Karthik Ram [aut] ,
Karl Broman [aut, cre]
Maintainer: Karl Broman <broman@wisc.edu>
Diff between aRxiv versions 0.10 dated 2024-02-29 and 0.12 dated 2025-07-29
DESCRIPTION | 14 - MD5 | 28 +- NEWS.md | 12 R/arxiv_count.R | 6 R/arxiv_search.R | 4 R/can_arxiv_connect.R | 4 build/vignette.rds |binary data/arxiv_cats.RData |binary data/query_terms.RData |binary inst/doc/aRxiv.R | 12 inst/doc/aRxiv.Rmd | 4 inst/doc/aRxiv.html | 457 ++++++++++++++----------------------- tests/testthat/test-arxiv_errors.R | 4 tests/testthat/test-clean.R | 6 vignettes/aRxiv.Rmd | 4 15 files changed, 230 insertions(+), 325 deletions(-)
Title: Statistical Framework for in Vivo Drug Combination Studies
Description: A framework for evaluating drug combination effects in preclinical in vivo studies.
'SynergyLMM' provides functions to analyze longitudinal tumor growth experiments using mixed-effects models,
perform time-resolved analyses of synergy and antagonism, evaluate model diagnostics and performance,
and assess both post-hoc and a priori statistical power.
The calculation of drug combination synergy follows the statistical framework provided by Demidenko and Miller (2019, <doi:10.1371/journal.pone.0224137>).
The implementation and analysis of linear mixed-effect models is based on the methods described by Pinheiro and Bates (2000, <doi:10.1007/b98882>),
and Gałecki and Burzykowski (2013, <doi:10.1007/978-1-4614-3900-4>).
Author: Rafael Romero-Becerra [aut, cre] ,
Zhi Zhao [ctb],
Tero Aittokallio [ctb]
Maintainer: Rafael Romero-Becerra <r.r.becerra@medisin.uio.no>
Diff between SynergyLMM versions 1.0.1 dated 2025-02-07 and 1.1.0 dated 2025-07-29
DESCRIPTION | 14 MD5 | 113 ++-- NAMESPACE | 8 NEWS.md | 24 + R/APrioriPwr.R | 45 + R/CookDistance.R | 116 ++++ R/ObsvsPred.R | 1 R/PostHocPwr.R | 12 R/PwrSampleSize.R | 26 - R/PwrTime.R | 21 R/lmmModel.R | 166 ++++++- R/lmmModel_estimates.R | 107 ++++ R/lmmSynergy.R | 599 +++++++++++++++++++++++-- R/logLikSubjectDisplacements.R | 39 + R/plot_ObsvsPred.R | 2 R/plot_lmmModel.R | 40 - R/plot_lmmSynergy.R | 61 +- R/plot_ranefDiagnostics.R | 32 - R/ranefDiagnostics.R | 47 - R/residDiagnostics.R | 28 - R/simulateTumorGrowth.R |only R/utils.R | 105 ++-- inst/doc/SynergyLMM.R | 75 ++- inst/doc/SynergyLMM.Rmd | 152 ++++-- inst/doc/SynergyLMM.html | 709 ++++++++++++++---------------- man/APrioriPwr.Rd | 6 man/CookDistance.Rd | 53 +- man/PwrSampleSize.Rd | 6 man/PwrTime.Rd | 6 man/figures/README-CooksD-1.png |binary man/figures/README-CooksD_fitted-1.png |only man/figures/README-CooksD_fixef-1.png |only man/figures/README-bliss_syn-1.png |binary man/figures/README-fit_model-1.png |binary man/figures/README-fit_model_gomp-1.png |only man/figures/README-hsa_syn-1.png |binary man/figures/README-logLikDisp-1.png |binary man/figures/README-obs_vs_pred-1.png |binary man/figures/README-pwrsamplesize-1.png |binary man/figures/README-ra_syn-1.png |binary man/figures/README-ranef_diag-1.png |binary man/figures/README-robustSE-1.png |binary man/figures/logo.png |only man/lmmModel.Rd | 75 ++- man/lmmModel_estimates.Rd | 23 man/lmmSynergy.Rd | 134 +++++ man/logLikSubjectDisplacements.Rd | 2 man/plot_ranefDiagnostics.Rd | 4 man/ranefDiagnostics.Rd | 14 man/residDiagnostics.Rd | 16 man/simulateTumorGrowth.Rd | 2 tests/testthat/test-lmmDiagnostics.R | 80 ++- tests/testthat/test-lmmModel.R | 163 ++++++ tests/testthat/test-lmmPower.R | 2 tests/testthat/test-lmmSynergy.R | 255 +++++++++- tests/testthat/test-plot_SynergyLMM.R | 3 vignettes/CooksDistance_fitted.png |only vignettes/CooksDistance_fixef.png |only vignettes/Fig1_LMM_Graphical_Abstract.png |binary vignettes/Gompertz_model.png |only vignettes/SynergyLMM.Rmd | 152 ++++-- vignettes/loglikDisp.png |only 62 files changed, 2643 insertions(+), 895 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R.
ADaM datasets are a mandatory part of any New Drug or Biologics
License Application submitted to the United States Food and Drug
Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam>).
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Arianna Cascone [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
G Gayatri [aut],
Solveig Holmgaard [aut],
Dinakar Kulkarni [aut],
Edoardo Mancini [aut] ,
Gordon Miller [aut],
J [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiral versions 1.3.0 dated 2025-06-25 and 1.3.1 dated 2025-07-29
DESCRIPTION | 10 +- MD5 | 138 ++++++++++++++++++------------------ NEWS.md | 17 +++- R/create_query_data.R | 28 +++---- R/data.R | 8 +- R/derive_joined.R | 2 R/derive_merged.R | 2 R/derive_param_tte.R | 2 R/derive_var_atoxgr.R | 6 - R/derive_vars_dt.R | 4 - R/derive_vars_dtm.R | 3 R/derive_vars_query.R | 14 +-- R/roxygen2.R | 4 - inst/WORDLIST | 25 +----- inst/doc/adsl.R | 2 inst/doc/adsl.Rmd | 2 inst/doc/adsl.html | 10 +- inst/doc/bds_exposure.html | 2 inst/doc/bds_finding.html | 2 inst/doc/bds_tte.html | 2 inst/doc/concepts_conventions.html | 2 inst/doc/generic.html | 6 - inst/doc/higher_order.html | 2 inst/doc/hys_law.html | 2 inst/doc/imputation.html | 2 inst/doc/lab_grading.Rmd | 7 - inst/doc/lab_grading.html | 12 +-- inst/doc/occds.html | 2 inst/doc/pk_adnca.html | 2 inst/doc/questionnaires.html | 2 inst/doc/visits_periods.html | 4 - inst/templates/ad_adsl.R | 2 man/admiral-package.Rd | 2 man/assert_db_requirements.Rd |only man/assert_terms.Rd |only man/atoxgr_criteria_ctcv4.Rd | 2 man/atoxgr_criteria_ctcv4_uscv.Rd | 2 man/atoxgr_criteria_ctcv5.Rd | 2 man/atoxgr_criteria_ctcv5_uscv.Rd | 2 man/create_query_data.Rd | 9 +- man/derive_extreme_event.Rd | 2 man/derive_locf_records.Rd | 2 man/derive_param_tte.Rd | 6 - man/derive_var_atoxgr_dir.Rd | 6 + man/derive_var_extreme_flag.Rd | 2 man/derive_var_joined_exist_flag.Rd | 8 -- man/derive_var_obs_number.Rd | 2 man/derive_var_relative_flag.Rd | 2 man/derive_var_trtemfl.Rd | 3 man/derive_vars_atc.Rd | 3 man/derive_vars_dt.Rd | 4 - man/derive_vars_dtm.Rd | 4 - man/derive_vars_extreme_event.Rd | 2 man/derive_vars_joined.Rd | 4 - man/derive_vars_joined_summary.Rd | 2 man/derive_vars_merged.Rd | 10 +- man/derive_vars_merged_lookup.Rd | 2 man/derive_vars_query.Rd | 10 +- man/event.Rd | 2 man/event_joined.Rd | 2 man/figures/gsk_logo.png |only man/figures/roche_logo.png |only man/filter_joined.Rd | 2 man/filter_relative.Rd | 2 man/get_joined_data.Rd | 2 man/get_terms_from_db.Rd | 9 -- man/get_vars_query.Rd | 7 - man/query.Rd | 4 - man/validate_basket_select.Rd |only man/validate_query.Rd |only tests/testthat/test-roxygen2.R | 4 - vignettes/adsl.Rmd | 2 vignettes/lab_grading.Rmd | 7 - 73 files changed, 232 insertions(+), 232 deletions(-)
Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types
of resampling objects (e.g. bootstrap, cross-validation).
Author: Hannah Frick [aut, cre] ,
Fanny Chow [aut],
Max Kuhn [aut],
Michael Mahoney [aut] ,
Julia Silge [aut] ,
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between rsample versions 1.3.0 dated 2025-04-02 and 1.3.1 dated 2025-07-29
rsample-1.3.0/rsample/R/inner_split.R |only rsample-1.3.0/rsample/man/inner_split.Rd |only rsample-1.3.0/rsample/tests/testthat/test-inner_split.R |only rsample-1.3.1/rsample/DESCRIPTION | 27 rsample-1.3.1/rsample/LICENSE | 2 rsample-1.3.1/rsample/MD5 | 208 +- rsample-1.3.1/rsample/NAMESPACE | 38 rsample-1.3.1/rsample/NEWS.md | 7 rsample-1.3.1/rsample/R/apparent.R | 6 rsample-1.3.1/rsample/R/boot.R | 199 +- rsample-1.3.1/rsample/R/bootci.R | 169 + rsample-1.3.1/rsample/R/caret.R | 28 rsample-1.3.1/rsample/R/clustering.R | 32 rsample-1.3.1/rsample/R/compat-vctrs-helpers.R | 7 rsample-1.3.1/rsample/R/compat-vctrs.R | 8 rsample-1.3.1/rsample/R/complement.R | 6 rsample-1.3.1/rsample/R/initial_split.R | 51 rsample-1.3.1/rsample/R/initial_validation_split.R | 89 rsample-1.3.1/rsample/R/internal_calibration_split.R |only rsample-1.3.1/rsample/R/labels.R | 8 rsample-1.3.1/rsample/R/make_groups.R | 44 rsample-1.3.1/rsample/R/mc.R | 50 rsample-1.3.1/rsample/R/misc.R | 22 rsample-1.3.1/rsample/R/permutations.R | 18 rsample-1.3.1/rsample/R/printing.R | 43 rsample-1.3.1/rsample/R/reg_intervals.R | 43 rsample-1.3.1/rsample/R/reverse_splits.R | 3 rsample-1.3.1/rsample/R/rolling_origin.R | 30 rsample-1.3.1/rsample/R/rsample-package.R | 44 rsample-1.3.1/rsample/R/rset.R | 3 rsample-1.3.1/rsample/R/rsplit.R | 35 rsample-1.3.1/rsample/R/slide.R | 78 rsample-1.3.1/rsample/R/validation_set.R | 20 rsample-1.3.1/rsample/R/validation_split.R | 30 rsample-1.3.1/rsample/R/vfold.R | 189 +- rsample-1.3.1/rsample/R/zzz-compat-vctrs-bootstraps.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-clustering_cv.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-group_bootstraps.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-group_mc_cv.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-group_validation_split.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-group_vfold_cv.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-manual_rset.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-permutations.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-rolling_origin.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-sliding_index.R | 48 rsample-1.3.1/rsample/R/zzz-compat-vctrs-sliding_period.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-sliding_window.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-validation_set.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-validation_split.R | 80 rsample-1.3.1/rsample/R/zzz-compat-vctrs-validation_time_split.R | 80 rsample-1.3.1/rsample/R/zzz.R | 6 rsample-1.3.1/rsample/README.md | 2 rsample-1.3.1/rsample/build/vignette.rds |binary rsample-1.3.1/rsample/inst/calibration-sets.Rmd |only rsample-1.3.1/rsample/inst/doc/Common_Patterns.R | 15 rsample-1.3.1/rsample/inst/doc/Common_Patterns.Rmd | 21 rsample-1.3.1/rsample/inst/doc/Common_Patterns.html | 357 +-- rsample-1.3.1/rsample/inst/doc/Working_with_rsets.R | 36 rsample-1.3.1/rsample/inst/doc/Working_with_rsets.Rmd | 67 rsample-1.3.1/rsample/inst/doc/rsample.R | 8 rsample-1.3.1/rsample/inst/doc/rsample.Rmd | 14 rsample-1.3.1/rsample/inst/images |only rsample-1.3.1/rsample/man/add_resample_id.Rd | 8 rsample-1.3.1/rsample/man/as.data.frame.rsplit.Rd | 4 rsample-1.3.1/rsample/man/group_vfold_cv.Rd | 8 rsample-1.3.1/rsample/man/int_pctl.Rd | 22 rsample-1.3.1/rsample/man/internal_calibration_split.Rd |only rsample-1.3.1/rsample/man/make_splits.Rd | 2 rsample-1.3.1/rsample/man/permutations.Rd | 2 rsample-1.3.1/rsample/man/rolling_origin.Rd | 4 rsample-1.3.1/rsample/man/rsample-package.Rd | 2 rsample-1.3.1/rsample/tests/testthat/_snaps/internal_calibration_split.md |only rsample-1.3.1/rsample/tests/testthat/_snaps/labels.md | 12 rsample-1.3.1/rsample/tests/testthat/helpers-rsample.R | 6 rsample-1.3.1/rsample/tests/testthat/test-boot.R | 3 rsample-1.3.1/rsample/tests/testthat/test-bootci.R | 251 +- rsample-1.3.1/rsample/tests/testthat/test-caret.R | 912 +++++++--- rsample-1.3.1/rsample/tests/testthat/test-clustering.R | 2 rsample-1.3.1/rsample/tests/testthat/test-compat-dplyr.R | 24 rsample-1.3.1/rsample/tests/testthat/test-initial_split.R | 41 rsample-1.3.1/rsample/tests/testthat/test-initial_validation_split.R | 46 rsample-1.3.1/rsample/tests/testthat/test-internal_calibration_split.R |only rsample-1.3.1/rsample/tests/testthat/test-labels.R | 19 rsample-1.3.1/rsample/tests/testthat/test-loo.R | 2 rsample-1.3.1/rsample/tests/testthat/test-make_groups.R | 7 rsample-1.3.1/rsample/tests/testthat/test-make_strata.R | 24 rsample-1.3.1/rsample/tests/testthat/test-manual.R | 6 rsample-1.3.1/rsample/tests/testthat/test-mc.R | 10 rsample-1.3.1/rsample/tests/testthat/test-misc.R | 9 rsample-1.3.1/rsample/tests/testthat/test-nested_cv.R | 30 rsample-1.3.1/rsample/tests/testthat/test-permutations.R | 2 rsample-1.3.1/rsample/tests/testthat/test-reg_intervals.R | 11 rsample-1.3.1/rsample/tests/testthat/test-reshuffle_rset.R | 6 rsample-1.3.1/rsample/tests/testthat/test-reverse_splits.R | 3 rsample-1.3.1/rsample/tests/testthat/test-rolling_origin.R | 24 rsample-1.3.1/rsample/tests/testthat/test-rsplit.R | 59 rsample-1.3.1/rsample/tests/testthat/test-validation_set.R | 38 rsample-1.3.1/rsample/tests/testthat/test-validation_split.R | 6 rsample-1.3.1/rsample/tests/testthat/test-vfold.R | 19 rsample-1.3.1/rsample/vignettes/Applications/Intervals.Rmd | 48 rsample-1.3.1/rsample/vignettes/Applications/Recipes_and_rsample.Rmd | 20 rsample-1.3.1/rsample/vignettes/Common_Patterns.Rmd | 21 rsample-1.3.1/rsample/vignettes/Working_with_rsets.Rmd | 67 rsample-1.3.1/rsample/vignettes/rsample.Rmd | 14 104 files changed, 3296 insertions(+), 1569 deletions(-)
Title: Linkage Disequilibrium Corrected by the Structure and the
Relatedness
Description: Four measures of linkage disequilibrium are provided: the usual r^2
measure, the r^2_S measure (r^2 corrected by the structure
sample), the r^2_V (r^2 corrected by the relatedness of
genotyped individuals), the r^2_VS measure (r^2 corrected by
both the relatedness of genotyped individuals and the structure
of the sample).
Author: David Desrousseaux [aut],
Florian Sandron [aut],
Aurelie Siberchicot [aut, cre] ,
Christine Cierco-Ayrolles [aut],
Brigitte Mangin [aut]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between LDcorSV versions 1.3.3 dated 2020-08-26 and 1.3.4 dated 2025-07-29
DESCRIPTION | 22 ++++++++++++++++------ MD5 | 2 +- 2 files changed, 17 insertions(+), 7 deletions(-)
Title: Official R API for Fetching Data from 'EODHD'
Description: Second and backward-incompatible version of R package 'eodhd' <https://eodhd.com/>, extended with a cache and quota system,
also offering functions for cleaning and aggregating the financial data.
Author: Marcelo S. Perlin [aut, cre, ctr],
Unicorn Data Services [cph]
Maintainer: Marcelo S. Perlin <marceloperlin@gmail.com>
Diff between eodhdR2 versions 0.5.1 dated 2024-09-12 and 0.5.2 dated 2025-07-29
DESCRIPTION | 7 +-- MD5 | 19 +++++---- NAMESPACE | 1 NEWS.md | 4 + R/intraday.R |only README.md | 64 +++++++++++++++---------------- man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/get_intraday.Rd |only tests/testthat/test-intraday.R |only tests/testthat/test-news.R | 2 tests/testthat/test-prices.R | 2 12 files changed, 54 insertions(+), 45 deletions(-)
Title: Disease-Drived Differential Proteins Co-Expression Network
Analysis
Description: Functions designed to connect disease-related differential proteins and
co-expression network. It provides the basic statics analysis included t test, ANOVA analysis.
The network construction is not offered by the package, you can used 'WGCNA' package which you
can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis
included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and
hub analysis.
Author: Kefu Liu [aut, cre]
Maintainer: Kefu Liu <liukefu19@163.com>
Diff between DDPNA versions 0.3.3 dated 2024-03-13 and 0.4.1 dated 2025-07-29
DESCRIPTION | 10 +++--- MD5 | 14 ++++----- NAMESPACE | 3 + R/missing_value_impute.R | 67 +++++++++++++++++++++++--------------------- R/plot.R | 7 ++-- README.md | 4 -- man/DDPNA-package.Rd | 4 +- man/missing_value_impute.Rd | 12 ------- 8 files changed, 57 insertions(+), 64 deletions(-)
Title: Gene Operations for Real-Coded Genes
Description: Representation-dependent gene-level operations
for genetic and evolutionary algorithms with real-coded genes
are collected in this package. The common feature of the gene
operations is that all of them are useful for derivation-free
optimization algorithms. At the moment the package
implements initialization, mutation, crossover, and replication
operations for differential evolution as described in
Price, Kenneth V., Storn, Rainer M. and Lampinen, Jouni A. (2005)
<doi:10.1007/3-540-31306-0>. In addition, several (more recent)
methods for determining the scale factor are provided.
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaDfGene versions 1.0.0.3 dated 2025-04-16 and 1.0.0.5 dated 2025-07-29
DESCRIPTION | 13 - MD5 | 30 +-- NAMESPACE | 8 NEWS | 21 ++ R/xegaDfInitGene.R | 3 R/xegaDfMutate.R | 17 + R/xegaDfReplicate.R | 87 +++++++++ R/xegaDfScaleFactor.R | 316 ++++++++++++++++++++++++++++++++++- man/CauchySF.Rd |only man/ConstScaleFactor.Rd | 7 man/DETVSF.Rd |only man/FitnessBasedSelfAdaptiveSF.Rd |only man/RandomGaussianSF.Rd |only man/UniformRandomScaleFactor.Rd | 9 man/UniformRandomScaleFactorDERSF.Rd |only man/xegaDfInitGene.Rd | 3 man/xegaDfReplicateGeneDE.Rd | 4 man/xegaDfReplicateGeneDEPipeline.Rd |only man/xegaDfScaleFactorFactory.Rd | 5 19 files changed, 494 insertions(+), 29 deletions(-)
Title: A Collection of Utilities
Description: This is a new version of the 'userfriendlyscience' package,
which has grown a bit unwieldy. Therefore, distinct functionalities
are being 'consciously uncoupled' into different packages. This package
contains the general-purpose tools and utilities (see the
'behaviorchange' package, the 'rosetta' package, and the
soon-to-be-released 'scd' package for other functionality), and
is the most direct 'successor' of the original 'userfriendlyscience' package.
For example, this package contains a number of basic functions to create
higher level plots, such as diamond plots, to easily plot sampling
distributions, to generate confidence intervals, to plan study sample sizes
for confidence intervals, and to do some basic operations such as
(dis)attenuate effect size estimates.
Author: Gjalt-Jorn Peters [aut, cre] ,
Stefan Gruijters [ctb]
Maintainer: Gjalt-Jorn Peters <ufs@opens.science>
Diff between ufs versions 0.5.12 dated 2024-03-09 and 25.7.1 dated 2025-07-29
DESCRIPTION | 13 +- MD5 | 154 ++++++++++++++++---------------- R/areColors.R | 2 R/associationMatrix.R | 4 R/associationsDiamondPlot.R | 28 +++-- R/biAxisDiamondPlot.R | 20 ++-- R/checkDataIntegrity.R | 2 R/cohensdDist.R | 2 R/confIntOmegaSq.R | 2 R/confIntProp.R | 2 R/confIntR.R | 2 R/convert.R | 2 R/convert.d.to.nnc.R | 2 R/descr.R | 2 R/diamondPlot.R | 4 R/escapeRegex_(from_Hmisc).R | 2 R/extractVarName.R | 2 R/faConfInt.R | 2 R/factorLoadingDiamondCIplot.R | 2 R/factorLoadingHeatmap.R | 2 R/findShortestInterval.R | 2 R/ggBarChart.R | 2 R/ggBoxplot.R | 10 +- R/ggDiamondLayer.R | 20 ++-- R/ggEasyBar.R | 8 - R/ggPie.R | 2 R/ggProportionPlot.R | 18 +-- R/ggSave.R | 14 ++ R/ggqq.R | 18 +-- R/invertItems.R | 2 R/iqrOutlier.R | 2 R/knitFig.R | 29 +++--- R/meanSDtoDiamondPlot.R | 12 +- R/meansComparisonDiamondPlot.R | 4 R/meansDiamondPlot.R | 8 - R/multiResponse.R | 2 R/multiVarFreq.R | 2 R/normalHist.R | 2 R/pwr.omegasq.R | 14 +- build/partial.rdb |binary man/areColors.Rd | 2 man/associationMatrix.Rd | 2 man/associationMatrixHelperFunctions.Rd | 2 man/associationsDiamondPlot.Rd | 28 +++-- man/basicDiamondplotFunctions.Rd | 20 ++-- man/biAxisDiamondPlot.Rd | 20 ++-- man/checkDataIntegrity.Rd | 2 man/cohensDdistribution.Rd | 2 man/comparisonDiamondPlots.Rd | 4 man/confIntOmegaSq.Rd | 2 man/confIntProp.Rd | 2 man/confIntR.Rd | 2 man/convert.Rd | 2 man/descriptives.Rd | 2 man/diamondPlot.Rd | 4 man/escapeRegex.Rd | 2 man/extractVarName.Rd | 2 man/faConfInt.Rd | 2 man/factorLoadingDiamondCIplot.Rd | 2 man/factorLoadingHeatmap.Rd | 2 man/findShortestInterval.Rd | 2 man/ggBarChart.Rd | 2 man/ggBoxplot.Rd | 10 +- man/ggEasyPlots.Rd | 8 - man/ggPie.Rd | 2 man/ggProportionPlot.Rd | 18 +-- man/ggSave.Rd | 14 ++ man/ggqq.Rd | 14 +- man/invertingItems.Rd | 2 man/iqrOutlier.Rd | 2 man/knitFig.Rd | 29 +++--- man/meanSDtoDiamondPlot.Rd | 4 man/meansDiamondPlot.Rd | 6 - man/multiResponse.Rd | 2 man/multiVarFreq.Rd | 2 man/nncConversion.Rd | 2 man/normalHist.Rd | 2 man/pwr.omegasq.Rd | 14 +- 78 files changed, 351 insertions(+), 312 deletions(-)
Title: Hot-Spot Analysis with Simple Features
Description: Identify and understand clusters of points (typically representing
the locations of places or events) stored in simple-features (SF) objects.
This is useful for analysing, for example, hot-spots of crime events. The
package emphasises producing results from point SF data in a single step
using reasonable default values for all other arguments, to aid rapid data
analysis by users who are starting out. Functions available include kernel
density estimation (for details, see Yip (2020)
<doi:10.22224/gistbok/2020.1.12>), analysis of spatial association (Getis
and Ord (1992) <doi:10.1111/j.1538-4632.1992.tb00261.x>) and hot-spot
classification (Chainey (2020) ISBN:158948584X).
Author: Matt Ashby [aut, cre]
Maintainer: Matt Ashby <matthew.ashby@ucl.ac.uk>
Diff between sfhotspot versions 0.9.1 dated 2025-02-19 and 1.0.0 dated 2025-07-29
sfhotspot-0.9.1/sfhotspot/inst/doc/introduction.Rmd |only sfhotspot-0.9.1/sfhotspot/vignettes/introduction.Rmd |only sfhotspot-1.0.0/sfhotspot/DESCRIPTION | 12 sfhotspot-1.0.0/sfhotspot/MD5 | 55 sfhotspot-1.0.0/sfhotspot/NAMESPACE | 2 sfhotspot-1.0.0/sfhotspot/NEWS.md | 20 sfhotspot-1.0.0/sfhotspot/R/create_grid.R | 20 sfhotspot-1.0.0/sfhotspot/R/hotspot_clip.R |only sfhotspot-1.0.0/sfhotspot/R/hotspot_dual_kde.R | 19 sfhotspot-1.0.0/sfhotspot/R/hotspot_gistar.R | 11 sfhotspot-1.0.0/sfhotspot/R/hotspot_kde.R | 11 sfhotspot-1.0.0/sfhotspot/R/kernel_density.R | 45 sfhotspot-1.0.0/sfhotspot/R/set_bandwidth.R | 2 sfhotspot-1.0.0/sfhotspot/R/st_transform_auto.R |only sfhotspot-1.0.0/sfhotspot/R/validate_inputs.R | 32 sfhotspot-1.0.0/sfhotspot/README.md | 4 sfhotspot-1.0.0/sfhotspot/build/vignette.rds |binary sfhotspot-1.0.0/sfhotspot/inst/doc/introduction.R | 52 sfhotspot-1.0.0/sfhotspot/inst/doc/introduction.html | 667 ++-------- sfhotspot-1.0.0/sfhotspot/inst/doc/introduction.qmd |only sfhotspot-1.0.0/sfhotspot/man/hotspot_clip.Rd |only sfhotspot-1.0.0/sfhotspot/man/hotspot_dual_kde.Rd | 10 sfhotspot-1.0.0/sfhotspot/man/hotspot_gistar.Rd | 10 sfhotspot-1.0.0/sfhotspot/man/hotspot_kde.Rd | 10 sfhotspot-1.0.0/sfhotspot/man/st_transform_auto.Rd |only sfhotspot-1.0.0/sfhotspot/tests/testthat/40th_precinct.gpkg |only sfhotspot-1.0.0/sfhotspot/tests/testthat/test-create_grid.R | 13 sfhotspot-1.0.0/sfhotspot/tests/testthat/test-hotspot_clip.R |only sfhotspot-1.0.0/sfhotspot/tests/testthat/test-hotspot_dual_kde.R | 21 sfhotspot-1.0.0/sfhotspot/tests/testthat/test-kernel_density.R | 64 sfhotspot-1.0.0/sfhotspot/tests/testthat/test-set_bandwidth.R | 11 sfhotspot-1.0.0/sfhotspot/tests/testthat/test-st_transform_auto.R |only sfhotspot-1.0.0/sfhotspot/tests/testthat/test-validate_inputs.R | 12 sfhotspot-1.0.0/sfhotspot/vignettes/introduction.qmd |only 34 files changed, 524 insertions(+), 579 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data generated by WALZ hardware. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 1.0.2 dated 2025-02-25 and 1.0.4 dated 2025-07-29
pam-1.0.2/pam/tests/testthat/results/20240925_model_result.csv |only pam-1.0.2/pam/tests/testthat/results/20240925_raw_data.csv |only pam-1.0.2/pam/tests/testthat/results/20240925_regression_data.csv |only pam-1.0.4/pam/DESCRIPTION | 10 pam-1.0.4/pam/MD5 | 42 +-- pam-1.0.4/pam/NAMESPACE | 1 pam-1.0.4/pam/R/read_pam_data.R | 112 ++++++++++ pam-1.0.4/pam/build/partial.rdb |binary pam-1.0.4/pam/inst/CITATION | 2 pam-1.0.4/pam/inst/extdata/junior_pam |only pam-1.0.4/pam/man/read_junior_pam_data.Rd |only pam-1.0.4/pam/tests/testthat/Rplots.pdf |binary pam-1.0.4/pam/tests/testthat/data_junior_pam |only pam-1.0.4/pam/tests/testthat/helper-os-detection.R |only pam-1.0.4/pam/tests/testthat/test-compare_regression_models_etr_I.R | 36 +-- pam-1.0.4/pam/tests/testthat/test-compare_regression_models_etr_II.R | 34 +-- pam-1.0.4/pam/tests/testthat/test-compare_regression_models_total.R | 62 ++--- pam-1.0.4/pam/tests/testthat/test-eilers_peeters_etr_I.R | 94 +++----- pam-1.0.4/pam/tests/testthat/test-eilers_peeters_etr_II.R | 94 +++----- pam-1.0.4/pam/tests/testthat/test-eilers_peeters_etr_II_junior_pam.R |only pam-1.0.4/pam/tests/testthat/test-platt_etr_I.R | 86 +++---- pam-1.0.4/pam/tests/testthat/test-platt_etr_II.R | 86 +++---- pam-1.0.4/pam/tests/testthat/test-vollenweider_etr_I.R | 93 +++----- pam-1.0.4/pam/tests/testthat/test-vollenweider_etr_II.R | 96 +++----- pam-1.0.4/pam/tests/testthat/test-walsby_etr_I.R | 76 ++---- pam-1.0.4/pam/tests/testthat/test-walsby_etr_II.R | 76 ++---- 26 files changed, 473 insertions(+), 527 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.58.0 dated 2025-06-05 and 1.67.0 dated 2025-07-29
future-1.58.0/future/man/FutureBackend.Rd |only future-1.58.0/future/man/MulticoreFuture-class.Rd |only future-1.67.0/future/DESCRIPTION | 44 + future-1.67.0/future/MD5 | 83 +-- future-1.67.0/future/NAMESPACE | 1 future-1.67.0/future/NEWS.md | 54 ++ future-1.67.0/future/R/backend_api-01-FutureBackend-class.R | 13 future-1.67.0/future/R/backend_api-03.MultiprocessFutureBackend-class.R | 6 future-1.67.0/future/R/backend_api-11.ClusterFutureBackend-class.R | 254 +++++----- future-1.67.0/future/R/backend_api-11.MulticoreFutureBackend-class.R | 54 +- future-1.67.0/future/R/backend_api-11.SequentialFutureBackend-class.R | 12 future-1.67.0/future/R/backend_api-13.MultisessionFutureBackend-class.R | 9 future-1.67.0/future/R/backend_api-Future-class.R | 5 future-1.67.0/future/R/backend_api-evalFuture.R | 14 future-1.67.0/future/R/core_api-cancel.R | 22 future-1.67.0/future/R/core_api-resolved.R | 46 + future-1.67.0/future/R/protected_api-FutureResult-class.R | 2 future-1.67.0/future/R/protected_api-resolve.R | 2 future-1.67.0/future/R/utils-options.R | 2 future-1.67.0/future/R/utils_api-nbrOfWorkers.R | 25 future-1.67.0/future/R/utils_api-plan-with.R | 5 future-1.67.0/future/R/utils_api-plan.R | 18 future-1.67.0/future/R/utils_api-tweak.R | 5 future-1.67.0/future/build/vignette.rds |binary future-1.67.0/future/inst/doc/future-1-overview.html | 97 +-- future-1.67.0/future/inst/doc/future-1-overview.md.rsp | 97 +-- future-1.67.0/future/inst/doc/future-6-future-api-backend-specification.html | 2 future-1.67.0/future/inst/doc/future-6-future-api-backend-specification.md.rsp | 1 future-1.67.0/future/inst/vignettes-static/future-1-overview.md.rsp.rsp | 8 future-1.67.0/future/man/Future-class.Rd | 2 future-1.67.0/future/man/FutureBackend-class.Rd |only future-1.67.0/future/man/cluster.Rd | 28 - future-1.67.0/future/man/future.Rd | 2 future-1.67.0/future/man/futureAssign.Rd | 2 future-1.67.0/future/man/multicore.Rd | 35 - future-1.67.0/future/man/multisession.Rd | 30 - future-1.67.0/future/man/plan.Rd | 89 +-- future-1.67.0/future/man/resolve.Rd | 2 future-1.67.0/future/man/resolved.Rd | 78 ++- future-1.67.0/future/man/sequential.Rd | 17 future-1.67.0/future/man/value.Rd | 2 future-1.67.0/future/man/zzz-future.options.Rd | 2 future-1.67.0/future/vignettes/future-1-overview.md.rsp | 97 +-- future-1.67.0/future/vignettes/future-6-future-api-backend-specification.md.rsp | 1 44 files changed, 724 insertions(+), 544 deletions(-)
Title: Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Description: Bayesian nonparametric density estimation modeling mixtures by a Ferguson-Klass type algorithm for posterior normalized random measures.
Author: Julyan Arbel [ctb],
Ernesto Barrios [aut],
Guillaume Kon Kam King [aut, cre, cph],
Antonio Lijoi [aut],
Luis E. Nieto-Barajas [aut],
Igor Pruenster [aut]
Maintainer: Guillaume Kon Kam King <guillaume.konkamking.work@gmail.com>
Diff between BNPdensity versions 2023.3.8 dated 2023-03-24 and 2025.7.29 dated 2025-07-29
BNPdensity-2023.3.8/BNPdensity/man/BNPdensity-package.Rd |only BNPdensity-2025.7.29/BNPdensity/DESCRIPTION | 15 - BNPdensity-2025.7.29/BNPdensity/MD5 | 95 +++++----- BNPdensity-2025.7.29/BNPdensity/NAMESPACE | 1 BNPdensity-2025.7.29/BNPdensity/R/BNPdensity-package.R | 55 ----- BNPdensity-2025.7.29/BNPdensity/R/GOFplots.R | 30 +-- BNPdensity-2025.7.29/BNPdensity/R/MixNRMI1.R | 16 - BNPdensity-2025.7.29/BNPdensity/R/MixNRMI1cens.R | 3 BNPdensity-2025.7.29/BNPdensity/R/MixNRMI2.R | 6 BNPdensity-2025.7.29/BNPdensity/R/MixNRMI2cens.R | 3 BNPdensity-2025.7.29/BNPdensity/R/MixPY1.R | 2 BNPdensity-2025.7.29/BNPdensity/R/MixPY2.R | 2 BNPdensity-2025.7.29/BNPdensity/R/MvInv.R | 24 -- BNPdensity-2025.7.29/BNPdensity/R/cens_data_check.R | 2 BNPdensity-2025.7.29/BNPdensity/R/censor_code_rl.R | 2 BNPdensity-2025.7.29/BNPdensity/R/comment_on_NRMI_type.R | 12 - BNPdensity-2025.7.29/BNPdensity/R/convert_fit_to_MCMC_chain.R | 6 BNPdensity-2025.7.29/BNPdensity/R/dk.R | 33 +-- BNPdensity-2025.7.29/BNPdensity/R/dt_.R | 5 BNPdensity-2025.7.29/BNPdensity/R/expected_number_of_clusters_stable_process.R | 25 +- BNPdensity-2025.7.29/BNPdensity/R/gs3.R | 9 BNPdensity-2025.7.29/BNPdensity/R/gsHP.R | 21 -- BNPdensity-2025.7.29/BNPdensity/R/gsYZstar.R | 3 BNPdensity-2025.7.29/BNPdensity/R/gsYZstarcens2.R | 6 BNPdensity-2025.7.29/BNPdensity/R/helper_functions.R | 20 +- BNPdensity-2025.7.29/BNPdensity/R/mixture_density_functions.R | 6 BNPdensity-2025.7.29/BNPdensity/R/multMixNRMI.R | 3 BNPdensity-2025.7.29/BNPdensity/R/p0.R | 24 -- BNPdensity-2025.7.29/BNPdensity/R/pk.R | 66 ++---- BNPdensity-2025.7.29/BNPdensity/R/posterior_clustering_analysis.R | 77 +++++--- BNPdensity-2025.7.29/BNPdensity/R/ptnorm.R | 6 BNPdensity-2025.7.29/BNPdensity/R/qgeneric.R | 2 BNPdensity-2025.7.29/BNPdensity/R/rfystar.R | 2 BNPdensity-2025.7.29/BNPdensity/R/rfyzstar.R | 2 BNPdensity-2025.7.29/BNPdensity/R/rk.R | 51 +---- BNPdensity-2025.7.29/BNPdensity/R/summarytext.R | 3 BNPdensity-2025.7.29/BNPdensity/README.md |only BNPdensity-2025.7.29/BNPdensity/TODO |only BNPdensity-2025.7.29/BNPdensity/man/MixNRMI1.Rd | 10 - BNPdensity-2025.7.29/BNPdensity/man/MvInv.Rd | 15 - BNPdensity-2025.7.29/BNPdensity/man/compute_optimal_clustering.Rd | 24 +- BNPdensity-2025.7.29/BNPdensity/man/cpo.Rd | 2 BNPdensity-2025.7.29/BNPdensity/man/cpo.default.Rd |only BNPdensity-2025.7.29/BNPdensity/man/dt_.Rd | 7 BNPdensity-2025.7.29/BNPdensity/man/gsHP.Rd | 9 BNPdensity-2025.7.29/BNPdensity/man/gsYZstarcens2.Rd | 3 BNPdensity-2025.7.29/BNPdensity/man/log_Vnk_PY.Rd |only BNPdensity-2025.7.29/BNPdensity/man/p0.Rd | 12 - BNPdensity-2025.7.29/BNPdensity/man/pk.Rd | 33 +-- BNPdensity-2025.7.29/BNPdensity/man/ptnorm.Rd | 3 BNPdensity-2025.7.29/BNPdensity/man/rk.Rd | 18 - 51 files changed, 301 insertions(+), 473 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity
in all their dimensions (taxonomic, phylogenetic and functional).
It allows performing a number of analyses based on species
identities/abundances, phylogenetic/functional distances, trees,
convex-hulls or kernel density n-dimensional hypervolumes
depicting species relationships.
Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>.
Author: Pedro Cardoso [aut, cre],
Stefano Mammola [aut],
Francois Rigal [aut],
Renato Hilario [aut],
Jose Carvalho [aut]
Maintainer: Pedro Cardoso <pmcardoso@ciencias.ulisboa.pt>
Diff between BAT versions 2.10.0 dated 2025-05-26 and 2.11.0 dated 2025-07-29
DESCRIPTION | 14 - MD5 | 16 - NAMESPACE | 4 R/BAT.R | 520 +++++++++++++++++++++++++++++++++++++--------- man/alpha.Rd | 3 man/alpha.accum.Rd | 4 man/alpha.estimate.Rd | 2 man/hyper.arrangement.Rd |only man/kernel.arrangement.Rd | 39 +-- man/kernel.bandwidth.Rd |only 10 files changed, 474 insertions(+), 128 deletions(-)
Title: Analyse and Interpret Time Series Features
Description: Provides a suite of functions for analysing, interpreting, and visualising
time-series features calculated from different feature sets from the 'theft' package.
Implements statistical learning methodologies described in Henderson, T.,
Bryant, A., and Fulcher, B. (2023) <doi:10.48550/arXiv.2303.17809>.
Author: Trent Henderson [cre, aut]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theftdlc versions 0.2.0 dated 2025-07-10 and 0.2.1 dated 2025-07-29
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/interval.R | 20 ++++++++++++-------- README.md | 8 ++++---- inst/doc/theftdlc.Rmd | 4 ++-- inst/doc/theftdlc.html | 10 +++++----- man/interval.Rd | 8 ++++---- vignettes/theftdlc.Rmd | 4 ++-- 8 files changed, 40 insertions(+), 36 deletions(-)
Title: Collinearity Detection using Redefined Variance Inflation Factor
and Graphical Methods
Description: The detection of troubling approximate collinearity in a multiple linear regression model is a classical problem in Econometrics. The objective of this package is to detect it using the variance inflation factor redefined and the scatterplot between the variance inflation factor and the coefficient of variation. For more details see Salmerón R., García C.B. and García J. (2018) <doi:10.1080/00949655.2018.1463376>, Salmerón, R., Rodríguez, A. and García C. (2020) <doi:10.1007/s00180-019-00922-x>, Salmerón, R., García, C.B, Rodríguez, A. and García, C. (2022) <doi:10.32614/RJ-2023-010>, Salmerón, R., García, C.B. and García, J. (2025) <doi:10.1007/s10614-024-10575-8> and Salmerón, R., García, C.B, García J. (2023, working paper) <doi:10.48550/arXiv.2005.02245>. You can also view the package vignette using 'browseVignettes("rvif")', the package website using 'browseURL(system.file("docs/index.html", package = "rvif"))' or version control on GitHub (<https: [...truncated...]
Author: R. Salmeron [aut, cre],
C.B. Garcia [aut]
Maintainer: R. Salmeron <romansg@ugr.es>
Diff between rvif versions 2.0 dated 2024-11-14 and 3.0 dated 2025-07-29
rvif-2.0/rvif/R/CV_VIF.R |only rvif-2.0/rvif/R/RVIF.R |only rvif-2.0/rvif/R/Theorem.R |only rvif-2.0/rvif/man/CV_VIF.Rd |only rvif-2.0/rvif/man/RVIF.Rd |only rvif-2.0/rvif/man/Theorem.Rd |only rvif-3.0/rvif/DESCRIPTION | 19 +++-- rvif-3.0/rvif/MD5 | 114 ++++++++++++++++++++++++++------- rvif-3.0/rvif/NAMESPACE | 9 +- rvif-3.0/rvif/R/cv_vif.R |only rvif-3.0/rvif/R/cv_vif_plot.R |only rvif-3.0/rvif/R/multicollinearity.R |only rvif-3.0/rvif/R/rvifs.R |only rvif-3.0/rvif/build |only rvif-3.0/rvif/data/CDpf.rda |binary rvif-3.0/rvif/data/SLM1.rda |binary rvif-3.0/rvif/data/SLM2.rda |binary rvif-3.0/rvif/data/Wissel.rda |binary rvif-3.0/rvif/data/employees.rda |binary rvif-3.0/rvif/data/euribor.rda |binary rvif-3.0/rvif/data/soil.rda |only rvif-3.0/rvif/inst |only rvif-3.0/rvif/man/CDpf.Rd | 23 +++--- rvif-3.0/rvif/man/SLM1.Rd | 19 ++--- rvif-3.0/rvif/man/SLM2.Rd | 19 ++--- rvif-3.0/rvif/man/Wissel.Rd | 11 +-- rvif-3.0/rvif/man/cv_vif.Rd |only rvif-3.0/rvif/man/cv_vif_plot.Rd |only rvif-3.0/rvif/man/employees.Rd | 17 ++-- rvif-3.0/rvif/man/euribor.Rd | 19 ++--- rvif-3.0/rvif/man/multicollinearity.Rd |only rvif-3.0/rvif/man/rvif-package.Rd | 47 ++++++++----- rvif-3.0/rvif/man/rvifs.Rd |only rvif-3.0/rvif/man/soil.Rd |only rvif-3.0/rvif/tests |only rvif-3.0/rvif/vignettes |only 36 files changed, 192 insertions(+), 105 deletions(-)
Title: Diagnostics for Lists of Codes Based on Measurements
Description: Diagnostics of list of codes based on concepts from the domains measurement and observation. This package works for data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Author: Edward Burn [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Marta Alcalde-Herraiz [aut]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between MeasurementDiagnostics versions 0.0.1 dated 2025-07-11 and 0.1.0 dated 2025-07-29
MeasurementDiagnostics-0.0.1/MeasurementDiagnostics/man/figures/HexstickerMeasurementDiagnostics.png |only MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/DESCRIPTION | 7 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/MD5 | 40 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/documentationHelpers.R | 2 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/plotMeasurementTimings.R | 100 + MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/plotMeasurementValueAsNumeric.R | 60 - MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/summariseMeasurementUse.R | 12 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/tableMeasurementTimings.R | 2 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/R/tableMeasurementValueAsNumeric.R | 5 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/README.md | 48 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/build/vignette.rds |binary MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/inst/doc/summariseMeasurementUse.html | 564 +++++----- MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/man/figures/README-unnamed-chunk-6-1.png |binary MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/man/figures/logo.png |only MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/man/plotDoc.Rd | 2 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/man/plotMeasurementTimings.Rd | 15 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/man/plotMeasurementValueAsNumeric.Rd | 5 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/tests/testthat/test-plotMeasurementTimings.R | 39 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/tests/testthat/test-plotMeasurementValueAsNumeric.R | 18 MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/tests/testthat/test-summariseCohortMeasurementUse.R | 86 - MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/tests/testthat/test-summariseMeasurementUse.R | 65 - MeasurementDiagnostics-0.1.0/MeasurementDiagnostics/tests/testthat/test-tableMeasurementTimings.R | 1 22 files changed, 619 insertions(+), 452 deletions(-)
More information about MeasurementDiagnostics at CRAN
Permanent link
Title: Web Server Log Analysis
Description: Provides Apache and IIS log analytics for transaction performance, client populations and workload definitions.
Author: Greg Hunt [aut, cre, cph]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between WebAnalytics versions 0.9.13 dated 2025-07-22 and 0.9.14 dated 2025-07-29
WebAnalytics-0.9.13/WebAnalytics/tests/_snaps |only WebAnalytics-0.9.13/WebAnalytics/tests/minimum.config |only WebAnalytics-0.9.13/WebAnalytics/tests/test-configVariables.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-getFileNames.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-getIISLogFields.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-latexfunctions.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-logFileRead.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-pdfgeneration.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-plotfunctions.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-texfunctions.R |only WebAnalytics-0.9.13/WebAnalytics/tests/test-workingDirectory.R |only WebAnalytics-0.9.13/WebAnalytics/tests/texmacrotest.X |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields1.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields2.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields3.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields4.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields5.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields6.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields7.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields8.log |only WebAnalytics-0.9.13/WebAnalytics/tests/u_getIISFields9.log |only WebAnalytics-0.9.13/WebAnalytics/tests/variables.config |only WebAnalytics-0.9.14/WebAnalytics/DESCRIPTION | 12 WebAnalytics-0.9.14/WebAnalytics/MD5 | 65 ++-- WebAnalytics-0.9.14/WebAnalytics/NAMESPACE | 1 WebAnalytics-0.9.14/WebAnalytics/NEWS.md | 12 WebAnalytics-0.9.14/WebAnalytics/R/configVariablesGet.R | 36 +- WebAnalytics-0.9.14/WebAnalytics/R/logFileRead.R | 147 +++++----- WebAnalytics-0.9.14/WebAnalytics/R/pdfGenerate.R | 24 + WebAnalytics-0.9.14/WebAnalytics/R/posixCut.R | 3 WebAnalytics-0.9.14/WebAnalytics/inst/doc/performance.pdf |binary WebAnalytics-0.9.14/WebAnalytics/inst/templates/makerpt.sh | 71 +++- WebAnalytics-0.9.14/WebAnalytics/man/configVariablesGet.Rd | 8 WebAnalytics-0.9.14/WebAnalytics/tests/testthat |only WebAnalytics-0.9.14/WebAnalytics/tests/testthat.R |only 35 files changed, 228 insertions(+), 151 deletions(-)
Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple
'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>,
'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>,
'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020)
<https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J.,
and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020)
<doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021)
<https://facebookresearch.github.io/Kats/>.
Author: Trent Henderson [cre, aut],
Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theft versions 0.8.1 dated 2025-07-10 and 0.8.2 dated 2025-07-29
DESCRIPTION | 8 - MD5 | 29 +++-- NAMESPACE | 6 + R/calculate_features.R | 207 +++++++++++++++++++++++++++----------- R/moment_calcs.R |only R/moments.R |only R/quantiles.R |only README.md | 22 ++-- inst/doc/theft.Rmd | 11 +- inst/doc/theft.html | 34 +++++- inst/python/kats_calculator.py | 6 - inst/python/tsfel_calculator.py | 11 +- inst/python/tsfresh_calculator.py | 10 + man/calculate_features.Rd | 16 ++ man/kurtosis.Rd |only man/moments.Rd |only man/quantiles.Rd |only man/skewness.Rd |only vignettes/theft.Rmd | 11 +- 19 files changed, 267 insertions(+), 104 deletions(-)
Title: Get Spanish Origin-Destination Data
Description: Gain seamless access to origin-destination (OD) data from the
Spanish Ministry of Transport, hosted at
<https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>.
This package simplifies the management of these large datasets by
providing tools to download zone boundaries, handle associated
origin-destination data, and process it efficiently with the 'duckdb'
database interface. Local caching minimizes repeated downloads,
streamlining workflows for researchers and analysts. Extensive
documentation is available at
<https://ropenspain.github.io/spanishoddata/index.html>, offering
guides on creating static and dynamic mobility flow visualizations and
transforming large datasets into analysis-ready formats.
Author: Egor Kotov [aut, cre] ,
Robin Lovelace [aut] ,
Eugeni Vidal-Tortosa [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between spanishoddata versions 0.2.0 dated 2025-06-15 and 0.2.1 dated 2025-07-29
DESCRIPTION | 6 MD5 | 46 +++--- NEWS.md | 10 + R/convert.R | 4 R/data-dir.R | 7 - R/duckdb-helpers.R | 2 README.md | 5 inst/doc/convert.html | 2 inst/doc/quick-get.html | 2 inst/doc/v1-2020-2021-mitma-data-codebook.html | 2 inst/doc/v2-2022-onwards-mitma-data-codebook.html | 2 inst/extdata/sql-queries/v1-nt-municipios-clean-csv-view-en.sql | 2 inst/extdata/sql-queries/v1-nt-municipios-clean-csv-view-es.sql | 2 inst/extdata/sql-queries/v1-od-distritos-clean-csv-view-en.sql | 4 inst/extdata/sql-queries/v1-od-distritos-clean-csv-view-es.sql | 8 - inst/extdata/sql-queries/v1-od-municipios-clean-csv-view-en.sql | 8 - inst/extdata/sql-queries/v1-od-municipios-clean-csv-view-es.sql | 10 - inst/schemaorg.json | 2 man/spod_connect.Rd | 2 man/spod_convert.Rd | 4 man/spod_duckdb_set_temp.Rd | 2 man/spod_get.Rd | 2 man/spod_get_data_dir.Rd | 2 tests/testthat/test-internal_utils.R | 67 ++++++++-- 24 files changed, 129 insertions(+), 74 deletions(-)
Title: Tools to Generate Vector Time Series
Description: A method 'generate()' is implemented in this package for the random
generation of vector time series according to models obtained by 'RMAWGEN',
'vars' or other packages. This package was created to generalize the
algorithms of the 'RMAWGEN' package for the analysis and generation of any
environmental vector time series.
Author: Emanuele Cordano [aut, cre, ctb]
Maintainer: Emanuele Cordano <emanuele.cordano@gmail.com>
Diff between RGENERATE versions 1.3.7 dated 2022-01-14 and 1.3.8 dated 2025-07-29
DESCRIPTION | 18 MD5 | 25 NAMESPACE | 1 R/gapFilling.R | 14 R/generate.R | 16 README.md | 12 build/vignette.rds |binary inst/CITATION | 75 inst/build_website.R |only inst/doc/stochastic_generation.R | 14 inst/doc/stochastic_generation.Rmd | 41 inst/doc/stochastic_generation.html |21080 ++++++++++++++++++------------------ man/generate.Rd | 14 vignettes/stochastic_generation.Rmd | 41 14 files changed, 10781 insertions(+), 10570 deletions(-)
Title: Make Optimal Financial Decisions
Description: Make optimal decisions for your personal or
household finances. Use tools and methods that are selected carefully
to align with academic consensus, bridging the gap between theoretical
knowledge and practical application. They help you find
your own personalized optimal discretionary spending or
optimal asset allocation, and prepare you for retirement
or financial independence.
The optimal solution to this problems is extremely complex,
and we only have a single lifetime to get it right.
Fortunately, we now have the user-friendly tools implemented,
that integrate life-cycle models
with single-period net-worth mean-variance optimization models.
Those tools can be used by anyone who wants to see
what highly-personalized optimal decisions can look like.
For more details see:
Idzorek T., Kaplan P. (2024, ISBN:9781952927379),
Haghani V., White J. (2023, ISBN:9781119747918).
Author: Kamil Wais [aut, cre, cph, fnd] ,
Olesia Wais [aut]
Maintainer: Kamil Wais <kamil.wais@gmail.com>
Diff between R4GoodPersonalFinances versions 1.0.0 dated 2025-06-04 and 1.1.0 dated 2025-07-29
R4GoodPersonalFinances-1.0.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_life_expectancy/plot1.svg |only R4GoodPersonalFinances-1.0.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_scenarios |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/DESCRIPTION | 8 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/MD5 | 138 - R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/NAMESPACE | 3 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/NEWS.md | 32 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/Household.R | 24 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/HouseholdMember.R | 25 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/calc_optimal_asset_allocation.R | 6 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/calc_optimal_portfolio.R | 63 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/create_portfolio_template.R | 4 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/generate_cashflow_streams.R | 10 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/get_default_gompertz_parameters.R |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_expected_allocation.R | 46 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_expected_spending.R | 12 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_future_saving_rates.R |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_future_spending.R | 22 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_life_expectancy.R | 43 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_optimal_portfolio.R | 58 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_scenarios.R | 18 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/plot_structure.R | 19 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/render_scenario_snapshot.R |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/simulate_scenario.R | 55 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/simulate_scenarios.R | 32 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/simulate_single_scenario.R | 75 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/sysdata.rda |binary R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/R/utils.R | 44 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/inst/CITATION | 2 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/Household.Rd | 18 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/HouseholdMember.Rd | 18 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/get_default_gompertz_parameters.Rd |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/plot_expected_allocation.Rd | 3 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/plot_future_saving_rates.Rd |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/render_scenario_snapshot.Rd |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/simulate_scenario.Rd | 19 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/man/simulate_scenarios.Rd | 14 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/calc_portfolio.md | 38 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/create_portfolio_template.md | 144 - R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/generate_random_returns.md | 40 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_expected_allocation/ea-mc.svg |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_expected_allocation/plot1.svg | 78 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_expected_allocation/plot2.svg | 78 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_expected_allocation/plot3.svg | 78 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_expected_capital/plot1.svg | 93 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_income/plot1.svg | 236 ++ R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_income/plot2.svg | 239 ++ R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_saving_rates |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot1.svg | 190 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot2.svg | 229 ++ R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot3.svg | 116 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot4.svg | 196 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot5.svg | 229 ++ R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot6.svg | 232 ++ R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_future_spending/plot7.svg | 120 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_life_expectancy/plot-leh.svg |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_life_expectancy/plot-lep.svg |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_optimal_portfolio/plot1.svg | 115 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/plot_survival/plot1.svg | 83 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/_snaps/simulate_single_scenario.md | 1066 +++++----- R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-Household.R | 6 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-calc_optimal_portfolio.R | 7 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-get_default_gompertz_parameters.R |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_expected_allocation.R | 77 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_expected_capital.R | 7 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_future_income.R | 12 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_future_saving_rates.R |only R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_future_spending.R | 47 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_life_expectancy.R | 23 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_optimal_portfolio.R | 8 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_scenarios.R | 36 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-plot_survival.R | 6 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-simulate_scenario.R | 168 + R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-simulate_scenarios.R | 15 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-simulate_single_scenario.R | 47 R4GoodPersonalFinances-1.1.0/R4GoodPersonalFinances/tests/testthat/test-utils.R | 22 75 files changed, 3984 insertions(+), 908 deletions(-)
More information about R4GoodPersonalFinances at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.17 dated 2025-07-04 and 1.18 dated 2025-07-29
DESCRIPTION | 6 MD5 | 40 +-- NEWS.md | 30 ++ R/baseXML.R | 31 +- R/class-workbook-wrappers.R | 51 +++- R/class-workbook.R | 315 +++++++++++++++++++-------- R/class-worksheet.R | 31 +- R/read.R | 19 + R/utils.R | 17 - R/wb_load.R | 112 ++++++++- R/wb_styles.R | 6 inst/doc/openxlsx2_charts_manual.html | 9 man/wbWorkbook.Rd | 10 man/wb_add_border.Rd | 13 + man/wb_add_fill.Rd | 3 man/wb_to_df.Rd | 6 tests/testthat/test-conditional_formatting.R | 260 +++++++++++++++++----- tests/testthat/test-read_from_created_wb.R | 36 +++ tests/testthat/test-read_sources.R | 25 ++ tests/testthat/test-tables.R | 24 ++ tests/testthat/test-wb_styles.R | 46 +++ 21 files changed, 832 insertions(+), 258 deletions(-)
Title: Bayesian Analyses of Radiocarbon Dates with NIMBLE
Description: Provides utility functions and custom probability distribution for Bayesian analyses of radiocarbon dates within the 'nimble' modelling framework. It includes various population growth models, nimbleFunction objects, as well as a suite of functions for prior and posterior predictive checks for demographic inference (Crema and Shoda (2021) <doi:10.1371/journal.pone.0251695>) and other analyses.
Author: Enrico Crema [aut, cre] ,
Robert Di Napoli [ctb]
Maintainer: Enrico Crema <enrico.crema@gmail.com>
Diff between nimbleCarbon versions 0.2.5 dated 2023-08-14 and 0.2.6 dated 2025-07-29
DESCRIPTION | 15 MD5 | 18 - NEWS.md | 4 R/compare.models.R | 2 R/postPredSPD.R | 4 README.md | 5 build/vignette.rds |binary inst/doc/nimble_carbon_vignette.html | 617 +++++++++++++++++------------------ man/compare.models.Rd | 2 man/postPredSPD.Rd | 4 10 files changed, 338 insertions(+), 333 deletions(-)
Title: Statistical Tools for Filebacked Big Matrices
Description: Easy-to-use, efficient, flexible and scalable statistical tools.
Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping.
It provides for instance matrix operations, Principal Component Analysis,
sparse linear supervised models, utility functions and more
<doi:10.1093/bioinformatics/bty185>.
Author: Florian Prive [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between bigstatsr versions 1.6.1 dated 2024-09-09 and 1.6.2 dated 2025-07-29
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/utils-assert.R | 8 ++++---- tests/testthat/test-colstats.R | 14 ++++++++++---- tests/testthat/test-counts.R | 3 +++ tests/testthat/test-crossprodSelf.R | 3 +++ tests/testthat/test-prodVec.R | 3 +++ tests/testthat/test-randomSVD.R | 3 +++ tests/testthat/test-univLinReg.R | 3 +++ tests/testthat/test-univLogReg.R | 3 +++ 12 files changed, 53 insertions(+), 24 deletions(-)
Title: Annual Regional Database of the European Commission (ARDECO)
Description: A set of functions to access the 'ARDECO' (Annual Regional Database
of the European Commission) data directly from the official ARDECO public
repository through the exploitation of the 'ARDECO' APIs.
The APIs are completely transparent to the user and the provided functions
provide a direct access to the 'ARDECO' data.
The 'ARDECO' database is a collection of variables related to demography,
employment, labour market, domestic product, capital formation.
Each variable can be exposed in one or more units of measure as well as
refers to total values plus additional dimensions like economic sectors, gender,
age classes. Data can be also aggregated at country level according
to the tercet classes as defined by EUROSTAT.
The description of the 'ARDECO' database can be found at the following URL
<https://territorial.ec.europa.eu/ardeco>.
Author: Carmelo Attardo [cre],
Giuseppe Bucciarelli [aut],
European Commission, JRC [cph]
Maintainer: Carmelo Attardo <carmelo.attardo@ec.europa.eu>
Diff between ARDECO versions 2.2.2 dated 2025-04-28 and 2.2.3 dated 2025-07-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 2 ++ R/get_dataset_data.R | 2 +- R/get_dataset_list.R | 2 +- R/get_tercet_list.R | 2 +- R/get_variable_list.R | 2 +- R/get_variable_props.R | 2 +- build/vignette.rds |binary man/ardeco.Rd | 2 +- 10 files changed, 21 insertions(+), 19 deletions(-)
Title: Construct Two-Phase Experimental Designs with Correlated Errors
Description: Tools for constructing and analyzing two-phase experimental designs under correlated error structures. Version 1.1.1 includes improved efficiency factor classification with tolerance control, updated plot visualizations, and improved clarity of the results. The conceptual framework and the term two-phase were introduced by McIntyre (1955) <doi:10.2307/3001770>).
Author: Akhilesh Jha [aut, cre],
Cini Varghese [aut],
Seema Jaggi [aut],
Eldho Varghese [aut],
Mohd Harun [aut],
Med Ram Verma [aut]
Maintainer: Akhilesh Jha <jha.akhilesh09@gmail.com>
Diff between TwoPhaseCorR versions 1.1.0 dated 2025-07-28 and 1.1.1 dated 2025-07-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 34 ++++++++++++++++++++++++---------- R/TwoPhaseDesign.R | 1 + man/TwoPhaseDesign.Rd | 1 + 5 files changed, 35 insertions(+), 19 deletions(-)
Title: Robust Effect Size Index (RESI) Estimation
Description: Summarize model output using a robust effect size index. The index is introduced in Vandekar, Tao, & Blume (2020, <doi:10.1007/s11336-020-09698-2>). Software paper available at <doi:10.18637/jss.v112.i03>.
Author: Megan Jones [aut, cre],
Kaidi Kang [aut],
Simon Vandekar [aut],
Gina Yu [ctb],
Xinyu Zhang [ctb]
Maintainer: Megan Jones <megan.n.taylor@vanderbilt.edu>
Diff between RESI versions 1.3.0 dated 2025-03-23 and 1.3.2 dated 2025-07-29
RESI-1.3.0/RESI/inst/doc/RESI.R |only RESI-1.3.0/RESI/inst/doc/RESI.Rmd |only RESI-1.3.0/RESI/inst/doc/RESI.html |only RESI-1.3.0/RESI/man/Anova.resi.Rd |only RESI-1.3.2/RESI/DESCRIPTION | 21 +- RESI-1.3.2/RESI/MD5 | 31 +-- RESI-1.3.2/RESI/NAMESPACE | 6 RESI-1.3.2/RESI/NEWS.md | 11 + RESI-1.3.2/RESI/R/Anova.resi.R | 1 RESI-1.3.2/RESI/R/resi.R | 44 ++++- RESI-1.3.2/RESI/R/resi_pe.R | 217 +++++++++++++++++++++++++- RESI-1.3.2/RESI/README.md | 5 RESI-1.3.2/RESI/build/vignette.rds |binary RESI-1.3.2/RESI/inst/doc/RESI_paper.pdf |only RESI-1.3.2/RESI/inst/doc/RESI_paper.pdf.asis |only RESI-1.3.2/RESI/man/anova.resi.Rd |only RESI-1.3.2/RESI/man/resi.Rd | 38 ++++ RESI-1.3.2/RESI/man/resi_pe.Rd | 43 ++++- RESI-1.3.2/RESI/tests/testthat/test-resi.R | 67 +++++++- RESI-1.3.2/RESI/vignettes/RESI_paper.Rmd |only RESI-1.3.2/RESI/vignettes/RESI_paper.pdf.asis |only 21 files changed, 442 insertions(+), 42 deletions(-)
Title: Automated Construction of R Data Packages from REDCap Projects
Description: Export all data, including metadata, from a REDCap (Research
Electronic Data Capture) Project via the REDCap API
<https://projectredcap.org/wp-content/resources/REDCapTechnicalOverview.pdf>.
The exported (meta)data will be processed and formatted into a stand alone R
data package which can be installed and shared between researchers. Several
default reports are generated as vignettes in the resulting package.
Author: Peter DeWitt [aut, cre]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between REDCapExporter versions 0.3.1 dated 2024-11-06 and 0.3.2 dated 2025-07-29
DESCRIPTION | 9 +++--- MD5 | 20 ++++++------- NEWS.md | 14 +++++++++ build/vignette.rds |binary inst/doc/api.R | 24 ++++++++-------- inst/doc/api.html | 5 ++- inst/doc/formatting.R | 2 - inst/doc/formatting.html | 5 ++- inst/doc/redcap2package.R | 4 +- inst/doc/redcap2package.html | 25 +++++++++-------- tests/test-export.R | 62 +++++++++++++++++++++++++------------------ 11 files changed, 100 insertions(+), 70 deletions(-)
More information about REDCapExporter at CRAN
Permanent link
Title: Random Network Model Estimation, Selection and Parameter Tuning
Description: Model fitting, model selection and parameter tuning procedures for a class of random network models. Many useful network modeling, estimation, and processing methods are included. The work to build and improve this package is partially supported by the NSF grants DMS-2015298 and DMS-2015134.
Author: Tianxi Li [aut, cre],
Elizeveta Levina [aut],
Ji Zhu [aut],
Can M. Le [aut]
Maintainer: Tianxi Li <tianxili@umn.edu>
Diff between randnet versions 0.7 dated 2023-05-20 and 1.0 dated 2025-07-29
DESCRIPTION | 23 +++---- MD5 | 60 ++++++++++--------- NAMESPACE | 9 +- R/RCode.R | 133 +++++++++++++++++++++++++++++--------------- R/RcppExports.R |only man/BHMC.estimate.Rd | 2 man/BlockModel.Gen.Rd | 2 man/ConcensusClust.Rd | 2 man/DCSBM.estimate.Rd | 2 man/ECV.Rank.Rd | 2 man/ECV.block.Rd | 2 man/ECV.nSmooth.lowrank.Rd | 2 man/InformativeCore.Rd | 4 - man/LRBIC.Rd | 2 man/LSM.PGD.Rd | 2 man/NCV.select.Rd | 2 man/NMI.Rd | 2 man/NSBM.Gen.Rd | 7 -- man/NSBM.estimate.Rd | 6 - man/RDPG.Gen.Rd | 2 man/RightSC.Rd | 4 - man/SBM.estimate.Rd | 2 man/Smooth.Oracle.Rd | 2 man/USVT.Rd | 2 man/k.core.Rd |only man/nSmooth.Rd | 2 man/network.mixing.Bfold.Rd | 5 - man/network.mixing.Rd | 8 -- man/randnet-package.Rd | 15 ++-- man/reg.SP.Rd | 2 man/reg.SSP.Rd | 2 src |only 32 files changed, 179 insertions(+), 131 deletions(-)
Title: Client Interface for 'openEO' Servers
Description: Access data and processing functionalities of 'openEO' compliant back-ends in R.
Author: Florian Lahn [aut, cre],
Peter James Zellner [ctb],
Matthias Mohr [ctb]
Maintainer: Florian Lahn <florian.lahn@eftas.com>
Diff between openeo versions 1.4.0 dated 2025-05-13 and 1.4.1 dated 2025-07-29
DESCRIPTION | 6 +- MD5 | 11 ++- NEWS.md | 6 ++ R/authentication.R | 6 -- inst/doc/openeo-04-process_graph_concepts.html | 2 inst/doc/openeo-05-process_graph_building_application.html | 38 ++++++------- tests/testthat/gee_test |only 7 files changed, 37 insertions(+), 32 deletions(-)
Title: A Metadata and Text Extraction and Manipulation Tool Set
Description: Provides a function collection to extract metadata, sectioned text and study characteristics from scientific articles in 'NISO-JATS' format. Articles in PDF format can be converted to 'NISO-JATS' with the 'Content ExtRactor and MINEr' ('CERMINE', <https://github.com/CeON/CERMINE>). For convenience, two functions bundle the extraction heuristics: JATSdecoder() converts 'NISO-JATS'-tagged XML files to a structured list with elements title, author, journal, history, 'DOI', abstract, sectioned text and reference list. study.character() extracts multiple study characteristics like number of included studies, statistical methods used, alpha error, power, statistical results, correction method for multiple testing, software used. The function get.stats() extracts all statistical results from text and recomputes p-values for many standard test statistics. It performs a consistency check of the reported with the recalculated p-values. An estimation of the involved sample size is performed [...truncated...]
Author: Ingmar Boeschen [aut, cre]
Maintainer: Ingmar Boeschen <ingmar.boeschen@uni-hamburg.de>
Diff between JATSdecoder versions 1.2.0 dated 2023-10-12 and 1.2.1 dated 2025-07-29
DESCRIPTION | 15 ++- MD5 | 30 +++---- R/JATS_get.author.R | 6 - R/JATS_get.tables.R | 41 +++++++--- R/JATSdecoder.R | 7 + R/character_allStats.R | 3 R/character_get.stats.R | 1 R/character_standardStats.R | 171 ++++++++++++++++++++++++++++++++++---------- R/helper_Pcheck.R | 157 ++++++++++++++++++++++++++++++++++------ R/helper_letter.convert.R | 22 ++++- R/helper_preCheck.R | 2 R/helper_text2num.R | 21 +++-- R/helper_text2sentences.R | 3 man/get.stats.Rd | 3 man/get.tables.Rd | 4 - man/standardStats.Rd | 11 ++ 16 files changed, 382 insertions(+), 115 deletions(-)
Title: Genome-Wide Robust Analysis for Biobank Data (GRAB)
Description: Provides a comprehensive suite of genome-wide association study (GWAS) methods
specifically designed for biobank-scale data. The package offers computationally efficient
and robust association tests for time-to-event traits (e.g., Bi et al., 2020
<doi:10.1016/j.ajhg.2020.06.003>), ordinal categorical traits (e.g., Bi et al., 2021
<doi:10.1016/j.ajhg.2021.03.019>), and longitudinal traits (Xu et al., 2025
<doi:10.1038/s41467-025-56669-1>). Additionally, it includes functions for
simulating genotype and phenotype data to support research and method development.
Author: Wenjian Bi [aut],
Wei Zhou [aut],
Rounak Dey [aut],
Zhangchen Zhao [aut],
Seunggeun Lee [aut],
Woody Miao [cre]
Maintainer: Woody Miao <miaolin@pku.edu.cn>
Diff between GRAB versions 0.2.1 dated 2025-07-25 and 0.2.2 dated 2025-07-29
DESCRIPTION | 12 MD5 | 38 R/GRAB_Marker.R | 4 R/GRAB_Region.R | 4 R/GRAB_Simu.R | 4 R/POLMM.R | 8 R/SPACox.R | 4 R/SPAGRM.R | 1674 ++++++++++++++++++------------------- R/SPAmix.R | 4 R/WtCoxG.R | 6 README.md | 277 ------ inst/extdata/simuPHENO.txt | 2002 ++++++++++++++++++++++----------------------- man/GRAB.Marker.Rd | 4 man/GRAB.POLMM.Rd | 8 man/GRAB.Region.Rd | 4 man/GRAB.SPACox.Rd | 4 man/GRAB.SPAGRM.Rd | 4 man/GRAB.SPAmix.Rd | 4 man/GRAB.WtCoxG.Rd | 6 man/GRAB.makePlink.Rd | 4 20 files changed, 1918 insertions(+), 2157 deletions(-)
Title: Wrangle and Analyze Growth Curve Data
Description: Easy wrangling and model-free analysis of
microbial growth curve data, as commonly output by plate readers.
Tools for reshaping common plate reader outputs into 'tidy' formats and
merging them with design information, making data easy to work with using
'gcplyr' and other packages. Also streamlines common growth curve
processing steps, like smoothing and calculating derivatives, and
facilitates model-free characterization and analysis of growth data.
See methods at <https://mikeblazanin.github.io/gcplyr/>.
Author: Mike Blazanin [aut, cre]
Maintainer: Mike Blazanin <mikeblazanin@gmail.com>
Diff between gcplyr versions 1.11.0 dated 2025-01-16 and 1.12.0 dated 2025-07-29
DESCRIPTION | 15 - MD5 | 62 +++--- NEWS.md | 12 + R/example_functions.R | 17 + R/functions.R | 311 +++++++++++++------------------ R/utility_functions.R | 25 +- README.md | 2 build/vignette.rds |binary inst/doc/gc01_gcplyr.pdf |binary inst/doc/gc02_import_reshape.pdf |binary inst/doc/gc03_incorporate_designs.pdf |binary inst/doc/gc04_preprocess_plot.R | 13 + inst/doc/gc04_preprocess_plot.Rmd | 25 ++ inst/doc/gc04_preprocess_plot.pdf |binary inst/doc/gc05_process.pdf |binary inst/doc/gc06_analyze.pdf |binary inst/doc/gc07_noise.pdf |binary inst/doc/gc08_conclusion.pdf |binary inst/doc/gc09_multiple_plates.pdf |binary inst/doc/gc10_using_make_design.pdf |binary man/merge_dfs.Rd | 4 man/trans_block_to_wide.Rd | 14 - man/trans_wide_to_tidy.Rd | 44 ++-- tests/testthat/test_readfunctions.R | 81 ++++++++ tests/testthat/test_smoothingfunctions.R | 110 ++++++++++ tests/testthat/test_utilityfunctions.R | 17 + vignettes/gc01_gcplyr.html | 2 vignettes/gc02_import_reshape.html | 14 - vignettes/gc04_preprocess_plot.Rmd | 25 ++ vignettes/gc04_preprocess_plot.html | 166 +++++++++------- vignettes/gc07_noise.html | 6 vignettes/gc09_multiple_plates.html | 36 +-- 32 files changed, 635 insertions(+), 366 deletions(-)
Title: Fatty Acid Metabolic Analysis
Description: Fatty acid metabolic analysis aimed to the estimation of FA import (I), de novo synthesis (S), fractional contribution of the 13C-tracers (D0, D1, D2), elongation (E) and desaturation (Des) based on mass isotopologue data.
Author: Maribel Alcoriza-Balaguer [aut, cre],
Juan Carlos Garcia-Canaveras [ctb],
Agustin Lahoz [ths]
Maintainer: Maribel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between FAMetA versions 0.1.6 dated 2024-02-20 and 0.1.7 dated 2025-07-29
DESCRIPTION | 6 MD5 | 28 - R/FAMetA.R | 2 R/internal.R | 12 R/metabolicanalysis.R | 4 build/vignette.rds |binary inst/doc/vignette.R | 852 +++++++++++++++++++++---------------------- inst/doc/vignette.html | 6 man/elongationAnalysis.Rd | 2 man/estimatePars.Rd | 2 man/estimateSynthesis.Rd | 2 man/getFormula.Rd | 4 man/runElongationAnalysis.Rd | 154 +++---- man/runSynthesisAnalysis.Rd | 2 man/synthesisAnalysis.Rd | 2 15 files changed, 539 insertions(+), 539 deletions(-)
Title: Dynamic Model Averaging
Description: Dynamic model averaging for binary and continuous
outcomes.
Author: Tyler H. McCormick [aut],
Adrian Raftery [aut],
David Madigan [aut],
Sevvandi Kandanaarachchi [ctb, aut],
Hana Sevcikova [ctb, aut, cre]
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between dma versions 1.4-0 dated 2018-10-05 and 1.4-1 dated 2025-07-29
ChangeLog | 3 +++ DESCRIPTION | 32 ++++++++++++++++++++++++++------ MD5 | 10 +++++----- man/dma-package.Rd | 12 ++++++------ man/dma.Rd | 24 ++++++++++++------------ man/logistic.dma.Rd | 2 +- 6 files changed, 53 insertions(+), 30 deletions(-)
Title: Functional Singular Spectrum Analysis
Description: Methods and tools for implementing functional singular spectrum analysis and related techniques.
Author: Hossein Haghbin [aut, cre] ,
Jordan Trinka [aut],
Seyed Morteza Najibi [aut],
Mehdi Maadooliat [aut]
Maintainer: Hossein Haghbin <haghbin@pgu.ac.ir>
Diff between Rfssa versions 3.1.0 dated 2024-01-10 and 3.2.0 dated 2025-07-29
Rfssa-3.1.0/Rfssa/R/freconstruct.R |only Rfssa-3.1.0/Rfssa/R/wcor.R |only Rfssa-3.2.0/Rfssa/DESCRIPTION | 13 +- Rfssa-3.2.0/Rfssa/MD5 | 36 +++--- Rfssa-3.2.0/Rfssa/NEWS.md | 14 ++ Rfssa-3.2.0/Rfssa/R/as.R | 8 - Rfssa-3.2.0/Rfssa/R/freconstruct.r |only Rfssa-3.2.0/Rfssa/R/funts_class.R | 4 Rfssa-3.2.0/Rfssa/R/wcor.r |only Rfssa-3.2.0/Rfssa/man/Callcenter.Rd | 84 +++++++-------- Rfssa-3.2.0/Rfssa/man/Montana.Rd | 48 ++++----- Rfssa-3.2.0/Rfssa/man/Rfssa-package.Rd | 126 +++++++++++------------ Rfssa-3.2.0/Rfssa/man/as.funts.Rd | 8 - Rfssa-3.2.0/Rfssa/man/freconstruct.Rd | 2 Rfssa-3.2.0/Rfssa/man/funts.Rd | 36 ++++++ Rfssa-3.2.0/Rfssa/man/launchApp.Rd | 62 +++++------ Rfssa-3.2.0/Rfssa/man/loadAustinData.Rd | 64 ++++++------ Rfssa-3.2.0/Rfssa/man/loadCallcenterData.Rd | 130 ++++++++++++------------ Rfssa-3.2.0/Rfssa/man/loadMontanaData.Rd | 148 ++++++++++++++-------------- Rfssa-3.2.0/Rfssa/man/loadUtqiagvikData.Rd | 62 +++++------ Rfssa-3.2.0/Rfssa/man/print.fforecast.Rd | 62 +++++------ 21 files changed, 478 insertions(+), 429 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-25 1.0.8
2025-04-24 1.0.7
Title: Multi-Study Multi-Modality Generalized Factor Model
Description: We introduce a generalized factor model designed to jointly analyze high-dimensional multi-modality data from multiple studies by extracting study-shared and specified factors. Our factor models account for heterogeneous noises and overdispersion among modality variables with augmented covariates. We propose an efficient and speedy variational estimation procedure for estimating model parameters, along with a novel criterion for selecting the optimal number of factors. More details can be referred to Liu et al. (2025) <doi:10.48550/arXiv.2507.09889>.
Author: Wei Liu [aut, cre],
Qingzhi Zhong [aut]
Maintainer: Wei Liu <liuwei8@scu.edu.cn>
Diff between MMGFM versions 1.1.0 dated 2024-09-03 and 1.2.0 dated 2025-07-29
DESCRIPTION | 11 +-- MD5 | 16 +++- R/mmgfm.R | 4 - README.md |only build |only inst |only src/mmcgfm.cpp | 188 ++++++++++++++++++++++++++++----------------------------- vignettes |only 8 files changed, 115 insertions(+), 104 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] ,
Daniel Barnett [aut],
Yiwen He [aut],
Zhaoming Su [aut],
Lushi Cai [ctb],
Akshay Gupta [ctb],
Owen Jin [ctb],
Christoph Knopf [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 2.0.1 dated 2023-10-12 and 2.0.3 dated 2025-07-29
DESCRIPTION | 27 +++++++++++++++------------ MD5 | 14 +++++++------- R/aggregate.R | 2 +- R/import_data.R | 22 +++++++++++++++++++--- R/tidycode.R | 2 +- man/survey_IQR.Rd | 2 +- tests/testthat/test_extract_dt_comp.R | 13 ++++++++++--- tests/testthat/test_smart_read.R | 3 ++- 8 files changed, 56 insertions(+), 29 deletions(-)
Title: Tools for Exploring Regression Models with 'iNZight'
Description: Provides a suite of functions to use with regression models, including summaries, residual plots, and factor comparisons. Used as part of the Model Fitting module of 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] ,
Simon Potter [aut],
David Banks [aut],
Danny Chang [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightRegression versions 1.3.4 dated 2024-04-04 and 1.3.5 dated 2025-07-29
DESCRIPTION | 16 MD5 | 12 NAMESPACE | 3 R/bootstrap.R | 105 +++--- R/inzplot_lm.R | 26 - R/summary.R | 828 ++++++++++++++++++++++++++++---------------------- man/iNZightSummary.Rd | 2 7 files changed, 559 insertions(+), 433 deletions(-)
More information about iNZightRegression at CRAN
Permanent link
Title: Functions and Data for a Course on Modern Regression and
Classification
Description: Functions and data are provided that support a course
that emphasizes statistical issues of inference and generalizability.
The functions are designed to make it straightforward to illustrate
the use of cross-validation, the training/test approach, simulation,
and model-based estimates of accuracy. Methods considered are
Generalized Additive Modeling, Linear and Quadratic Discriminant
Analysis, Tree-based methods, and Random Forests.
Author: John Maindonald [aut, cre]
Maintainer: John Maindonald <john@statsresearch.co.nz>
Diff between gamclass versions 0.62.5 dated 2023-08-21 and 0.62.7 dated 2025-07-29
DESCRIPTION | 15 ++- MD5 | 30 +++--- NEWS | 7 + build/vignette.rds |binary inst/doc/AirbagEffectiveness.Rmd | 188 +++++++++++++++++++------------------- inst/doc/AirbagEffectiveness.html | 168 ++++++++++++++++----------------- inst/doc/airAccs.html | 13 +- inst/doc/resampling.html | 102 +++++++++++++------- man/CVgam.Rd | 8 - man/FARS.Rd | 2 man/addhlines.Rd | 4 man/bomregions2018.Rd | 4 man/fars2007.Rd | 2 man/gamRF.Rd | 12 +- man/greatLakesM.Rd | 6 - vignettes/AirbagEffectiveness.Rmd | 188 +++++++++++++++++++------------------- 16 files changed, 399 insertions(+), 350 deletions(-)
Title: Ensemble Partial Least Squares Regression
Description: An algorithmic framework for measuring feature importance,
outlier detection, model applicability domain evaluation,
and ensemble predictive modeling with (sparse)
partial least squares regressions.
Author: Nan Xiao [aut, cre] ,
Dong-Sheng Cao [aut],
Miao-Zhu Li [aut],
Qing-Song Xu [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between enpls versions 6.1 dated 2019-05-18 and 6.1.1 dated 2025-07-29
enpls-6.1.1/enpls/DESCRIPTION | 14 enpls-6.1.1/enpls/MD5 | 66 +-- enpls-6.1.1/enpls/NEWS.md | 33 + enpls-6.1.1/enpls/README.md | 50 +- enpls-6.1.1/enpls/build/vignette.rds |binary enpls-6.1.1/enpls/inst/doc/enpls.R | 22 - enpls-6.1.1/enpls/inst/doc/enpls.Rmd | 27 - enpls-6.1.1/enpls/inst/doc/enpls.html | 496 ++++++++++++++++------------ enpls-6.1.1/enpls/man/alkanes.Rd | 6 enpls-6.1.1/enpls/man/enpls-package.Rd | 9 enpls-6.1.1/enpls/man/enpls.ad.Rd | 16 enpls-6.1.1/enpls/man/enpls.fit.Rd | 12 enpls-6.1.1/enpls/man/enpls.fs.Rd | 12 enpls-6.1.1/enpls/man/enpls.od.Rd | 12 enpls-6.1.1/enpls/man/enspls.ad.Rd | 18 - enpls-6.1.1/enpls/man/enspls.fit.Rd | 14 enpls-6.1.1/enpls/man/enspls.fs.Rd | 14 enpls-6.1.1/enpls/man/enspls.od.Rd | 14 enpls-6.1.1/enpls/man/enspls.od.core.Rd | 3 enpls-6.1.1/enpls/man/figures |only enpls-6.1.1/enpls/man/logd1k.Rd | 6 enpls-6.1.1/enpls/man/plot.cv.enpls.Rd | 3 enpls-6.1.1/enpls/man/plot.cv.enspls.Rd | 3 enpls-6.1.1/enpls/man/plot.enpls.ad.Rd | 3 enpls-6.1.1/enpls/man/plot.enpls.fs.Rd | 10 enpls-6.1.1/enpls/man/plot.enpls.od.Rd | 11 enpls-6.1.1/enpls/man/plot.enspls.ad.Rd | 3 enpls-6.1.1/enpls/man/plot.enspls.fs.Rd | 10 enpls-6.1.1/enpls/man/plot.enspls.od.Rd | 11 enpls-6.1.1/enpls/man/predict.enpls.fit.Rd | 3 enpls-6.1.1/enpls/man/predict.enspls.fit.Rd | 3 enpls-6.1.1/enpls/vignettes/enpls.Rmd | 27 - enpls-6.1/enpls/LICENSE |only enpls-6.1/enpls/TODO |only 34 files changed, 570 insertions(+), 361 deletions(-)
Title: Distributed Online Goodness-of-Fit Tests for Distributed
Datasets
Description: Distributed Online Goodness-of-Fit Test can process the distributed datasets. The philosophy of the package is described in Guo G.(2024) <doi:10.1016/j.apm.2024.115709>.
Author: Guangbao Guo [aut, cre] ,
Di Chang [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between Dogoftest versions 0.2 dated 2025-06-24 and 0.3 dated 2025-07-29
DESCRIPTION | 9 +++++---- MD5 | 12 +++++++++++- data |only man/BSdata.Rd |only man/WhiteWine.Rd |only man/goats.Rd |only man/snow.Rd |only man/strength.Rd |only 8 files changed, 16 insertions(+), 5 deletions(-)