Title: Take Screenshots (Screen Capture) from R Command
Description: Take screenshots from R command and locate an image position.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between screenshot versions 0.9.1 dated 2024-05-29 and 0.9.2 dated 2025-08-26
screenshot-0.9.1/screenshot/man/hay2needle.Rd |only screenshot-0.9.2/screenshot/DESCRIPTION | 17 ++--- screenshot-0.9.2/screenshot/MD5 | 29 ++++---- screenshot-0.9.2/screenshot/NAMESPACE | 2 screenshot-0.9.2/screenshot/NEWS.md | 6 + screenshot-0.9.2/screenshot/R/clipboard.R | 30 ++++++++ screenshot-0.9.2/screenshot/R/display.R | 7 +- screenshot-0.9.2/screenshot/R/locate_image.R | 54 ++++++++++------ screenshot-0.9.2/screenshot/R/screenshot.R | 53 ++++++++------- screenshot-0.9.2/screenshot/README.md | 3 screenshot-0.9.2/screenshot/man/crop_image.Rd |only screenshot-0.9.2/screenshot/man/display_corner.Rd | 7 +- screenshot-0.9.2/screenshot/man/locate_image.Rd | 10 ++ screenshot-0.9.2/screenshot/man/locate_ndl_in_hay.Rd | 4 - screenshot-0.9.2/screenshot/man/reset_transparent.Rd |only screenshot-0.9.2/screenshot/man/save_clipboard_image.Rd | 5 + screenshot-0.9.2/screenshot/man/screenshot.Rd | 6 + 17 files changed, 155 insertions(+), 78 deletions(-)
Title: Provides Some Useful Functions for Making Statistical Tables
Description: You can use the functions provided by the package to make various statistical tables,
such as baseline data tables. Creates 'Table 1', i.e., a description of the baseline patient
characteristics, which is essential in every medical research.
Supports both continuous and categorical variables, as well as
p-values and standardized mean differences.
This method was described by Mary L McHugh (2013) <doi:10.11613/bm.2013.018>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>
Diff between scitb versions 0.2.1 dated 2024-09-25 and 0.2.2 dated 2025-08-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/sci1mean.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: A Modern K-Means (MKMeans) Clustering Algorithm
Description: It's a Modern K-Means clustering algorithm which works for data of any number of dimensions, has no limit with number of clusters expected, and can start with any initial cluster centers.
Author: Yarong Yang [aut, cre],
Nader Ebrahimi [ctb],
Yoram Rubin [ctb],
Jacob Zhang [ctb]
Maintainer: Yarong Yang <Yi.YA_yaya@hotmail.com>
Diff between MKMeans versions 3.2 dated 2025-08-20 and 3.3 dated 2025-08-26
DESCRIPTION | 8 +-- MD5 | 16 +++--- NAMESPACE | 3 - R/AllClasses.R | 2 R/C.f.R | 1 R/MKMeans.R | 126 ++++++++++++++++++++++++------------------------- man/MKMean-class.Rd | 5 + man/MKMeans-package.Rd | 8 +-- man/MKMeans.Rd | 9 +-- 9 files changed, 88 insertions(+), 90 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.6.0 dated 2025-08-19 and 1.6.1 dated 2025-08-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 +++++- R/07_Biclustering.R | 10 +++++----- 4 files changed, 16 insertions(+), 12 deletions(-)
Title: Segregation Analysis for Variant Interpretation
Description: An implementation of the full-likelihood Bayes factor (FLB)
for evaluating segregation evidence in clinical medical genetics. The
method was introduced by Thompson et al. (2003) <doi:10.1086/378100>.
This implementation supports custom penetrance values and liability
classes, and allows visualisations and robustness analysis as
presented in Ratajska et al. (2023) <doi:10.1002/mgg3.2107>. See also the
online app 'shinyseg', <https://chrcarrizosa.shinyapps.io/shinyseg>, which
offers interactive segregation analysis with many additional features
(Carrizosa et al. (2024) <doi:10.1093/bioinformatics/btae201>).
Author: Magnus Dehli Vigeland [aut, cre] ,
Christian Carrizosa [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between segregatr versions 0.4.0 dated 2024-06-28 and 0.5.0 dated 2025-08-26
DESCRIPTION | 15 ++++++++------- MD5 | 11 +++++++---- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/rareDistr.R |only R/sFLB.R |only build/partial.rdb |binary man/sFLB.Rd |only 8 files changed, 22 insertions(+), 11 deletions(-)
Title: K-Sample Rank Tests and their Combinations
Description: Compares k samples using the Anderson-Darling test, Kruskal-Wallis type tests
with different rank score criteria, Steel's multiple comparison test, and the
Jonckheere-Terpstra (JT) test. It computes asymptotic, simulated or (limited) exact
P-values, all valid under randomization, with or without ties, or conditionally
under random sampling from populations, given the observed tie pattern. Except for
Steel's test and the JT test it also combines these tests across several blocks of
samples. Also analyzed are 2 x t contingency tables and their blocked combinations
using the Kruskal-Wallis criterion. Steel's test is inverted to provide simultaneous
confidence bounds for shift parameters. A plotting function compares tail probabilities
obtained under asymptotic approximation with those obtained via simulation or exact
calculations.
Author: Fritz Scholz [aut, cre],
Angie Zhu [aut]
Maintainer: Fritz Scholz <fscholz@u.washington.edu>
Diff between kSamples versions 1.2-10 dated 2023-10-07 and 1.2-12 dated 2025-08-26
DESCRIPTION | 8 +-- MD5 | 14 +++--- R/Steel.test.R | 88 +++++++++++++++++++++++++++++--------- R/Steelnormal.R | 121 ++++++++++++++++++++++++++++------------------------- R/print.kSamples.R | 2 inst/NEWS.Rd | 9 +++ man/Steel.test.Rd | 28 ++++++++---- src/kSamples.c | 46 ++++---------------- 8 files changed, 184 insertions(+), 132 deletions(-)
Title: Factor Analysis for Data
Description: Compute maximum likelihood estimators of parameters in a Gaussian factor model using
the the matrix-free methodology described in Dai et al. (2020) <doi:10.1080/10618600.2019.1704296>.
In contrast to the factanal() function from 'stats' package, fad() can handle high-dimensional datasets where
number of variables exceed the sample size and is also substantially faster than the EM algorithms.
Author: Somak Dutta [aut, cre],
Fan Dai [aut],
Ranjan Maitra [ctb]
Maintainer: Somak Dutta <somakd@iastate.edu>
Diff between fad versions 0.9-1 dated 2022-05-01 and 0.9-3 dated 2025-08-26
DESCRIPTION | 12 +-- MD5 | 23 ++++--- R/fad.r | 2 R/rotations.r | 100 +-------------------------------- build/vignette.rds |binary inst/doc/fad-vignette-knitr.R |only inst/doc/fad-vignette-knitr.Rnw |only inst/doc/fad-vignette-knitr.pdf |only inst/doc/fad-vignette.R | 1 inst/doc/fad-vignette.Rnw | 6 - inst/doc/fad-vignette.pdf |binary src/eig_RXmD.cpp | 30 ++++++--- vignettes/fad-vignette-concordance.tex |only vignettes/fad-vignette-knitr.Rnw |only vignettes/fad-vignette.Rnw | 6 - 15 files changed, 52 insertions(+), 128 deletions(-)
Title: Inter-Widget Interactivity for HTML Widgets
Description: Provides building blocks for allowing HTML widgets to
communicate with each other, with Shiny or without (i.e. static .html
files). Currently supports linked brushing and filtering.
Author: Joe Cheng [aut],
Carson Sievert [aut, cre] ,
Posit Software, PBC [cph, fnd],
jQuery Foundation [cph] ,
jQuery contributors [ctb, cph] ,
Mark Otto [ctb] ,
Jacob Thornton [ctb] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Brian Reavis [ctb, cp [...truncated...]
Maintainer: Carson Sievert <carson@posit.co>
Diff between crosstalk versions 1.2.1 dated 2023-11-23 and 1.2.2 dated 2025-08-26
DESCRIPTION | 64 ++++++++++++++++++++++++++------------------------- MD5 | 8 +++--- NEWS.md | 4 +++ R/controls.R | 10 +++---- man/filter_slider.Rd | 4 +-- 5 files changed, 48 insertions(+), 42 deletions(-)
Title: Fit Hill Dose Response Models
Description: Evaluate, fit, and analyze Hill dose response models (Goutelle et
al., 2008 <doi:10.1111/j.1472-8206.2008.00633.x>), also sometimes referred
to as four-parameter log-logistic models. Includes tools to invert Hill
models, select models based on the Akaike information criterion
(Akaike, 1974 <doi:10.1109/TAC.1974.1100705>) or Bayesian information
criterion (Schwarz, 1978 <https://www.jstor.org/stable/2958889>), and
construct bootstrapped confidence intervals both
on the Hill model parameters and values derived from the Hill model
parameters.
Author: Anang Shelat [aut],
Nathaniel Twarog [aut, cre]
Maintainer: Nathaniel Twarog <nathaniel.twarog@stjude.org>
Diff between basicdrm versions 0.3.0 dated 2024-04-26 and 0.3.2 dated 2025-08-26
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- R/bestHillModel.R | 2 +- R/boundedOptimize.R | 6 +++++- README.md |only man/figures |only 6 files changed, 15 insertions(+), 9 deletions(-)
Title: A Gallery of Animations in Statistics and Utilities to Create
Animations
Description: Provides functions for animations in statistics, covering topics
in probability theory, mathematical statistics, multivariate statistics,
non-parametric statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning. These functions
may be helpful in teaching statistics and data analysis. Also provided in this
package are a series of functions to save animations to various formats, e.g.
Flash, 'GIF', HTML pages, 'PDF' and videos. 'PDF' animations can be inserted
into 'Sweave' / 'knitr' easily.
Author: Yihui Xie [aut, cre] ,
Christian Mueller [ctb],
Lijia Yu [ctb],
Xinyuan Chu [ctb],
Weicheng Zhu [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between animation versions 2.7 dated 2021-10-07 and 2.8 dated 2025-08-26
DESCRIPTION | 17 +++++++---- MD5 | 67 +++++++++++++++++++++++------------------------ NEWS.md | 6 +++- R/Rosling.bubbles.R | 7 ++-- R/ani.options.R | 4 +- R/animation-package.R | 5 +-- R/bisection.method.R | 4 +- R/buffon.needle.R | 4 +- R/cv.nfeaturesLDA.R | 4 +- R/ecol.death.sim.R | 2 - R/g.brownian.motion.R | 4 +- R/im.convert.R | 4 +- R/newton.method.R | 4 +- R/pdftk.R | 4 +- R/qpdf.R | 4 +- R/saveGIF.R | 2 - R/saveLatex.R | 2 - R/saveSWF.R | 4 +- R/saveVideo.R | 2 - README.md | 2 - build/partial.rdb |binary demo/00Index | 25 +++++++++-------- demo/estimate_pi.R |only inst/CITATION | 16 ++++------- inst/articles/jss725.Rnw | 4 +- man/Rosling.bubbles.Rd | 5 ++- man/ani.pause.Rd | 1 man/bisection.method.Rd | 2 - man/convert.Rd | 4 +- man/cv.nfeaturesLDA.Rd | 2 - man/ecol.death.sim.Rd | 2 - man/pollen.Rd | 2 - man/saveGIF.Rd | 2 - man/saveLatex.Rd | 2 - man/saveSWF.Rd | 2 - 35 files changed, 113 insertions(+), 108 deletions(-)
Title: Computing Personal Values Scores
Description: Compute personal values scores from various questionnaires based on the theoretical constructs proposed by professor Shalom H. Schwartz. Designed for researchers and practitioners in psychology, sociology, and related fields, the package facilitates the quantification and visualization of different dimensions related to personal values from survey data. It incorporates the recommended statistical adjustment to enhance the accuracy and interpretation of the results.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between persval versions 1.1.1 dated 2024-09-25 and 1.1.2 dated 2025-08-26
DESCRIPTION | 19 ++++++++++++------- MD5 | 8 ++++---- NEWS.md | 22 +++++++++++++--------- R/persval-package.R | 18 ++++++++++++------ man/persval.Rd | 18 ++++++++++-------- 5 files changed, 51 insertions(+), 34 deletions(-)
Title: Small Area Estimation: Time-Series Models
Description: Time series area-level models for small area estimation.
The package supplements the functionality of the sae package. Specifically, it includes
EBLUP fitting of the Rao-Yu model in the original form without a spatial component.
The package also offers a modified ("dynamic") version of the Rao-Yu model, replacing
the assumption of stationarity. Both univariate and multivariate applications are
supported. Of particular note is the allowance for covariance of the area-level sample
estimates over time, as encountered in rotating panel designs such as the U.S. National
Crime Victimization Survey or present in a time-series of 5-year estimates from the
American Community Survey. Key references to the methods include
J.N.K. Rao and I. Molina (2015, ISBN:9781118735787),
J.N.K. Rao and M. Yu (1994) <doi:10.2307/3315407>, and
R.E. Fay and R.A. Herriot (1979) <doi:10.1080/01621459.1979.10482505>.
Author: Robert Fay [aut, cre],
Mamadou Diallo [aut]
Maintainer: Robert Fay <bobfay@hotmail.com>
Diff between sae2 versions 1.2-1 dated 2023-08-23 and 1.2-2 dated 2025-08-26
DESCRIPTION | 29 ++--- MD5 | 27 ++--- NAMESPACE | 3 R/Gamma_u_f.R | 55 ++++++---- R/Gamma_u_ry.R |only R/Gamma_v_f.R | 22 +++- R/Gamma_v_ry.R |only R/dynRYfit.R | 258 ++++++++++++++++++++++++++------------------------- R/eblupDyn.R | 37 ++++--- R/eblupRY.R | 37 ++++--- inst |only man/dynRYfit.Rd | 71 ++++++++------ man/eblupDyn.Rd | 99 ++++++++++++------- man/geo_ratios.Rd | 2 man/mvrnormSeries.Rd | 2 man/sae2-package.Rd | 32 ++---- 16 files changed, 377 insertions(+), 297 deletions(-)
Title: Feature Selection Using Supervised Filter-Based Methods
Description: Tidy tools to apply filter-based supervised feature selection
methods. These methods score and rank feature relevance using metrics
such as p-values, correlation, and importance scores (Kuhn and Johnson
(2019) <doi:10.1201/9781315108230>).
Author: Frances Lin [aut, cre],
Max Kuhn [aut] ,
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Frances Lin <franceslinyc@gmail.com>
Diff between filtro versions 0.1.0 dated 2025-07-18 and 0.2.0 dated 2025-08-26
filtro-0.1.0/filtro/R/constructor.R |only filtro-0.1.0/filtro/inst/example_ames.R |only filtro-0.1.0/filtro/man/get_scores_aov.Rd |only filtro-0.1.0/filtro/man/new_score_obj.Rd |only filtro-0.1.0/filtro/man/score_aov.Rd |only filtro-0.2.0/filtro/DESCRIPTION | 39 - filtro-0.2.0/filtro/MD5 | 89 ++ filtro-0.2.0/filtro/NAMESPACE | 44 + filtro-0.2.0/filtro/NEWS.md | 14 filtro-0.2.0/filtro/R/class_score.R |only filtro-0.2.0/filtro/R/data.R |only filtro-0.2.0/filtro/R/desirability2.R |only filtro-0.2.0/filtro/R/filtro-package.R | 18 filtro-0.2.0/filtro/R/misc.R |only filtro-0.2.0/filtro/R/score-aov.R | 403 +++++++------ filtro-0.2.0/filtro/R/score-cor.R |only filtro-0.2.0/filtro/R/score-cross_tab.R |only filtro-0.2.0/filtro/R/score-forest_imp.R |only filtro-0.2.0/filtro/R/score-info_gain.R |only filtro-0.2.0/filtro/R/score-roc_auc.R |only filtro-0.2.0/filtro/R/utilities.R |only filtro-0.2.0/filtro/R/zzz.R |only filtro-0.2.0/filtro/README.md | 299 +++++++++ filtro-0.2.0/filtro/build/vignette.rds |only filtro-0.2.0/filtro/data |only filtro-0.2.0/filtro/inst/doc |only filtro-0.2.0/filtro/man/ames_scores_results.Rd |only filtro-0.2.0/filtro/man/arrange_score.Rd |only filtro-0.2.0/filtro/man/bind_scores.Rd |only filtro-0.2.0/filtro/man/class_score.Rd |only filtro-0.2.0/filtro/man/class_score_list.Rd |only filtro-0.2.0/filtro/man/dont_log_pvalues.Rd |only filtro-0.2.0/filtro/man/figures/README-pressure-1.png |binary filtro-0.2.0/filtro/man/figures/logo.png |only filtro-0.2.0/filtro/man/fill_safe_value.Rd |only filtro-0.2.0/filtro/man/fill_safe_values.Rd |only filtro-0.2.0/filtro/man/filtro-package.Rd | 5 filtro-0.2.0/filtro/man/rank_best_score_dense.Rd |only filtro-0.2.0/filtro/man/rank_best_score_min.Rd |only filtro-0.2.0/filtro/man/reexports.Rd |only filtro-0.2.0/filtro/man/rmd |only filtro-0.2.0/filtro/man/score_aov_pval.Rd |only filtro-0.2.0/filtro/man/score_cor_pearson.Rd |only filtro-0.2.0/filtro/man/score_imp_rf.Rd |only filtro-0.2.0/filtro/man/score_info_gain.Rd |only filtro-0.2.0/filtro/man/score_roc_auc.Rd |only filtro-0.2.0/filtro/man/score_xtab_pval_chisq.Rd |only filtro-0.2.0/filtro/man/show_best_desirability_num.Rd |only filtro-0.2.0/filtro/man/show_best_desirability_prop.Rd |only filtro-0.2.0/filtro/man/show_best_score_cutoff.Rd |only filtro-0.2.0/filtro/man/show_best_score_dual.Rd |only filtro-0.2.0/filtro/man/show_best_score_num.Rd |only filtro-0.2.0/filtro/man/show_best_score_prop.Rd |only filtro-0.2.0/filtro/tests/testthat/_snaps |only filtro-0.2.0/filtro/tests/testthat/helper-ames-res.R |only filtro-0.2.0/filtro/tests/testthat/helper-ames.R | 23 filtro-0.2.0/filtro/tests/testthat/helper-cells.R |only filtro-0.2.0/filtro/tests/testthat/helper-hpc_data.R |only filtro-0.2.0/filtro/tests/testthat/helper-perm.R |only filtro-0.2.0/filtro/tests/testthat/helper-titanic.R |only filtro-0.2.0/filtro/tests/testthat/test-classes.R |only filtro-0.2.0/filtro/tests/testthat/test-desirability2.R |only filtro-0.2.0/filtro/tests/testthat/test-score-aov.R | 377 ++++++++---- filtro-0.2.0/filtro/tests/testthat/test-score-cor.R |only filtro-0.2.0/filtro/tests/testthat/test-score-cross_tab.R |only filtro-0.2.0/filtro/tests/testthat/test-score-forest_imp.R |only filtro-0.2.0/filtro/tests/testthat/test-score-info_gain.R |only filtro-0.2.0/filtro/tests/testthat/test-score-roc_auc.R |only filtro-0.2.0/filtro/tests/testthat/test-utilities.R |only filtro-0.2.0/filtro/vignettes |only 70 files changed, 967 insertions(+), 344 deletions(-)
Title: Easier XML Data Collection
Description: Helpers for transforming
XML content into number of tables while preserving parent to child
relationships.
Author: Carson Sievert [aut, cre]
Maintainer: Carson Sievert <cpsievert1@gmail.com>
Diff between XML2R versions 0.0.8 dated 2024-06-04 and 0.0.9 dated 2025-08-26
DESCRIPTION | 15 +++++++++------ MD5 | 18 +++++++++--------- R/XML2R.R | 8 ++++---- R/utils.R | 8 ++++---- man/XML2Obs.Rd | 2 +- man/XML2R.Rd | 6 +++--- man/docsToNodes.Rd | 2 +- man/nodesToList.Rd | 2 +- man/re_name.Rd | 2 +- man/urlsToDocs.Rd | 2 +- 10 files changed, 34 insertions(+), 31 deletions(-)
Title: Client for US Treasury XML Feed and Published Data
Description: Download daily interest rates from the US Treasury XML feed.
Leveraging
<https://home.treasury.gov/treasury-daily-interest-rate-xml-feed>,
this package serves as a wrapper, facilitating the retrieval of daily
treasury rates across various categories, including par yield curves,
treasury bills, long-term rates, and real yield curves.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between treasury versions 0.3.0 dated 2025-07-10 and 0.4.0 dated 2025-08-26
treasury-0.3.0/treasury/man/tr_bill_rates.Rd |only treasury-0.4.0/treasury/DESCRIPTION | 10 +- treasury-0.4.0/treasury/MD5 | 28 +++---- treasury-0.4.0/treasury/NAMESPACE | 2 treasury-0.4.0/treasury/NEWS.md | 18 +++- treasury-0.4.0/treasury/R/interest-rate.R | 29 +++++-- treasury-0.4.0/treasury/R/yield-curve.R | 47 +++++++----- treasury-0.4.0/treasury/README.md | 2 treasury-0.4.0/treasury/man/figures/README-plot-1.png |binary treasury-0.4.0/treasury/man/tr_bill_rate.Rd |only treasury-0.4.0/treasury/man/tr_curve_rate.Rd | 22 ++++- treasury-0.4.0/treasury/man/tr_long_term_rate.Rd | 6 - treasury-0.4.0/treasury/man/tr_real_long_term.Rd | 6 - treasury-0.4.0/treasury/man/tr_real_yield_curve.Rd | 6 - treasury-0.4.0/treasury/man/tr_yield_curve.Rd | 6 - treasury-0.4.0/treasury/tests/testthat/test-interest-rate.R | 4 - 16 files changed, 114 insertions(+), 72 deletions(-)
Title: Tidy Multiverse Analysis Made Simple
Description: Extends 'multiverse' package
(Sarma A., Kale A., Moon M., Taback N., Chevalier F., Hullman J., Kay M., 2021)
<doi:10.31219/osf.io/yfbwm>, which allows users perform to create explorable
multiverse analysis in R. This extension provides an additional level of
abstraction to the 'multiverse' package with the aim of creating
user friendly syntax to researchers, educators, and students in statistics.
The 'mverse' syntax is designed to allow piping and takes hints from
the 'tidyverse' grammar. The package allows users to define and inspect
multiverse analysis using familiar syntax in R.
Author: Michael Jongho Moon [aut, cre],
Haoda Li [aut],
Mingwei Xu [aut],
Nathan Taback [aut],
Fanny Chevalier [aut],
Alison Gibbs [ctb]
Maintainer: Michael Jongho Moon <michael.moon@utoronto.ca>
Diff between mverse versions 0.2.2 dated 2025-06-21 and 0.2.3 dated 2025-08-26
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ build/partial.rdb |binary inst/CITATION | 2 +- inst/doc/mverse_gettingstarted.html | 9 +++++---- inst/doc/mverse_intro_glmmodelling.html | 15 ++++++++------- inst/doc/mverse_intro_regressionmodelling.R | 2 +- inst/doc/mverse_intro_regressionmodelling.Rmd | 2 +- inst/doc/mverse_intro_regressionmodelling.html | 9 +++++---- vignettes/mverse_intro_regressionmodelling.Rmd | 2 +- 11 files changed, 42 insertions(+), 32 deletions(-)
Title: Methods of Moments
Description: Several classes for moment-based models are defined. The classes are defined for moment conditions derived from a single equation or a system of equations. The conditions can also be expressed as functions or formulas. Several methods are also offered to facilitate the development of different estimation techniques. The methods that are currently provided are the Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), for single equations and systems of equation, and the Generalized Empirical Likelihood (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>). Some work is being done to add tools to deal with weak and/or many instruments. This includes K-Class estimators (Limited Information Maximum Likelihood and Fuller), Anderson and Rubin statistic test, etc.
Author: Pierre Chausse [aut, cre]
Maintainer: Pierre Chausse <pchausse@uwaterloo.ca>
Diff between momentfit versions 0.5 dated 2023-06-05 and 1.0 dated 2025-08-26
DESCRIPTION | 20 ++- MD5 | 128 ++++++++++++++---------- NAMESPACE | 11 +- NEWS | 23 +++- R/allClasses.R | 75 +++++++++----- R/gel.R | 21 +++ R/gelfit-methods.R | 155 +++++++++++++++++++++-------- R/gmm4.R | 2 R/gmmfit-methods.R | 40 +++++-- R/minAlgo.R |only R/momentData.R | 5 R/momentModel-methods.R | 222 ++++++++++++++++++++++++++++-------------- R/momentModel.R | 29 +++++ R/momentWeights-methods.R | 144 +++++++++++++++++---------- R/rModel-methods.R | 92 ++++++++++++----- R/rsysMomentModel-methods.R | 15 +- R/sgmmfit-methods.R | 13 +- R/summary-methods.R | 65 ++++++++---- R/sysMomentModel-methods.R | 179 +++++++++++++++++++++++---------- R/sysMomentModel.R | 4 R/sysdata.rda |only R/utils.R |only R/validity.R | 80 ++++++++++++++- R/weak.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/gelS4.R | 18 +-- inst/doc/gelS4.Rnw | 4 inst/doc/gelS4.pdf |binary inst/doc/gmmS4.R | 162 +++++++++++++++++------------- inst/doc/gmmS4.Rnw | 123 ++++++++++++++++++----- inst/doc/gmmS4.pdf |binary inst/doc/weak.R |only inst/doc/weak.Rmd |only inst/doc/weak.pdf |only man/algoObj.Rd |only man/confint-methods.Rd | 19 ++- man/gel4.Rd | 2 man/gelfit-class.Rd | 1 man/gmm4.Rd | 8 - man/gmmFit-methods.Rd | 1 man/gmmfit-class.Rd | 2 man/kclassfit-class.Rd |only man/kclassfit.Rd |only man/lambdaAlgo.Rd | 4 man/lse-methods.Rd |only man/lsefit-class.Rd |only man/minAlgo-class.Rd |only man/minAlgoNlm-class.Rd |only man/minAlgoStd-class.Rd |only man/minFit.Rd |only man/model.matrix-methods.Rd | 2 man/momentModel.Rd | 6 - man/momentStrength-methods.Rd | 32 +++--- man/print-methods.Rd | 6 - man/quadra-methods.Rd | 46 +++++++- man/restModel-methods.Rd | 33 ++++++ man/sgmmfit-class.Rd | 2 man/show-methods.Rd | 6 - man/solveGmm-methods.Rd | 16 +-- man/subsetting.Rd | 1 man/summaryGmm-class.Rd | 2 man/summaryKclass-class.Rd |only man/summarySysGmm-class.Rd | 2 man/sysMomentModel.Rd | 4 man/systemGmm.Rd | 10 - man/vcovHAC-methods.Rd | 7 + man/weakTest.Rd |only src/momentfit.h | 3 src/src.c | 1 src/utils.f |only vignettes/empir.bib | 110 ++++++++++++++++++++ vignettes/gelS4.Rnw | 4 vignettes/gmmS4.Rnw | 123 ++++++++++++++++++----- vignettes/weak.Rmd |only 75 files changed, 1498 insertions(+), 585 deletions(-)
Title: Fast and Scalable Single Cell Differential Expression Analysis
using Mixed-Effects Models
Description: A fast and scalable linear mixed-effects model (LMM) estimation algorithm
for analysis of single-cell differential expression. The algorithm uses
summary-level statistics and requires less computer memory to fit the LMM.
Author: Changjiang Xu [aut, cre],
Delaram Pouyabahar [ctb],
Veronique Voisin [ctb],
Gary Bader [ctb]
Maintainer: Changjiang Xu <changjiang.xu@utoronto.ca>
Diff between FLASHMM versions 1.2.2 dated 2025-08-19 and 1.2.3 dated 2025-08-26
DESCRIPTION | 8 - MD5 | 12 - NEWS.md | 2 inst/doc/FLASHMM-vignette.R | 9 - inst/doc/FLASHMM-vignette.Rmd | 42 +++--- inst/doc/FLASHMM-vignette.html | 270 ++++++++++++++++++++--------------------- vignettes/FLASHMM-vignette.Rmd | 42 +++--- 7 files changed, 200 insertions(+), 185 deletions(-)
Title: Canadian Hydrological Analyses
Description: A collection of user-submitted functions to aid in the analysis of hydrological data, particularly for users in Canada. The functions focus on the use of Canadian data sets, and are suited to Canadian hydrology, such as the important cold region hydrological processes and will work with Canadian hydrological models. The functions are grouped into several themes, currently including Statistical hydrology, Basic data manipulations, Visualization, and Spatial hydrology. Functions developed by the Floodnet project are also included. CSHShydRology has been developed with the assistance of the Canadian Society for Hydrological Sciences (CSHS) which is an affiliated society of the Canadian Water Resources Association (CWRA). As of version 1.2.6, functions now fail gracefully when attempting to download data from a url which is unavailable.
Author: Kevin Shook [cre, aut],
Paul Whitfield [aut],
Robert Chlumsky [aut],
Daniel Moore [aut],
Martin Durocher [aut],
Matthew Lemieux [ctb],
Jason Chiang [ctb],
Joel Trubilowicz [ctb],
SJ Kim [ctb]
Maintainer: Kevin Shook <kevin.shook@usask.ca>
Diff between CSHShydRology versions 1.4.2 dated 2024-07-16 and 1.4.3 dated 2025-08-26
DESCRIPTION | 11 ++++++----- MD5 | 24 +++++++++++++++--------- NAMESPACE | 14 ++++++++++++++ NEWS.md | 9 +++++++++ R/ch_circular_colors.R |only R/ch_col_transparent.R | 4 +--- R/ch_ffa_screen_plot.R |only R/ch_high_Grubbs_test.R |only R/ch_read_AHCCD_daily.R | 2 +- build/vignette.rds |binary inst/doc/hydrograph_plot.html | 22 +++++++++++----------- man/ch_circular_colors.Rd |only man/ch_col_transparent.Rd | 6 ++---- man/ch_ffa_screen_plot.Rd |only man/ch_high_Grubbs_test.Rd |only man/ch_read_AHCCD_daily.Rd | 2 +- 16 files changed, 60 insertions(+), 34 deletions(-)
Title: Maps Bone Densities from CT Scans to Surface Models
Description: Allows local bone density estimates to be derived from CT data and mapped to 3D bone models in a reproducible manner. Processing can be performed at the individual bone or group level. Also includes tools for visualizing the bone density estimates. Example methods are described in Telfer et al., (2021) <doi:10.1002/jor.24792>, Telfer et al., (2021) <doi:10.1016/j.jse.2021.05.011>.
Author: Scott Telfer [aut, cre, cph] ,
Lucas Lacambra [aut]
Maintainer: Scott Telfer <scott.telfer@gmail.com>
Diff between BoneDensityMapping versions 0.1.2 dated 2025-07-28 and 0.1.3 dated 2025-08-26
DESCRIPTION | 8 - MD5 | 30 ++-- NEWS.md | 4 R/BoneDensityFunctions.R | 1 inst/doc/example-workflow-vignette.R | 99 +++++++++++-- inst/doc/example-workflow-vignette.Rmd | 100 +++++++++++-- inst/doc/example-workflow-vignette.html | 152 ++++++++++++++------ tests/testthat/test-bone_scan_check.R | 184 ++++++++++++++++++++++--- tests/testthat/test-fill_bone_points.R | 30 ++-- tests/testthat/test-import_mesh.R | 40 ++--- tests/testthat/test-import_scan.R | 29 ++- tests/testthat/test-landmark_check.R | 29 +++ tests/testthat/test-surface_normal_intersect.R | 51 +++++- tests/testthat/test-surface_points_new.R | 50 +++++- tests/testthat/test-surface_points_template.R | 32 ++-- vignettes/example-workflow-vignette.Rmd | 100 +++++++++++-- 16 files changed, 729 insertions(+), 210 deletions(-)
More information about BoneDensityMapping at CRAN
Permanent link
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression. A description of a part of this package was published by Burgin and Ritschard (2017) <doi:10.18637/jss.v080.i06>.
Author: Reto Burgin [aut, cre] ,
Gilbert Ritschard [ctb]
Maintainer: Reto Burgin <rbuergin@gmx.ch>
Diff between vcrpart versions 1.0-6 dated 2024-10-04 and 1.0-7 dated 2025-08-26
vcrpart-1.0-6/vcrpart/ToDo |only vcrpart-1.0-7/vcrpart/DESCRIPTION | 13 vcrpart-1.0-7/vcrpart/MD5 | 27 vcrpart-1.0-7/vcrpart/NAMESPACE | 9 vcrpart-1.0-7/vcrpart/NEWS | 108 - vcrpart-1.0-7/vcrpart/R/olmm-methods.R | 1727 ++++++++++++------------- vcrpart-1.0-7/vcrpart/R/olmm-utils.R | 132 + vcrpart-1.0-7/vcrpart/R/olmm.R | 146 +- vcrpart-1.0-7/vcrpart/R/tvcm-cv.R | 6 vcrpart-1.0-7/vcrpart/man/olmm-control.Rd | 18 vcrpart-1.0-7/vcrpart/man/olmm-methods.Rd | 107 - vcrpart-1.0-7/vcrpart/man/olmm-overwritePar.Rd |only vcrpart-1.0-7/vcrpart/man/olmm.Rd | 118 - vcrpart-1.0-7/vcrpart/man/schizo.Rd | 8 vcrpart-1.0-7/vcrpart/src/Makevars | 2 vcrpart-1.0-7/vcrpart/src/Makevars.win |only 16 files changed, 1283 insertions(+), 1138 deletions(-)
Title: Interactively Explore Local Explanations with the Radial Tour
Description: Given a non-linear model, calculate the local explanation.
We purpose view the data space, explanation
space, and model residuals as ensemble graphic interactive on a shiny
application. After an observation of interest is identified, the normalized
variable importance of the local explanation is used as a 1D projection
basis. The support of the local explanation is then explored by changing
the basis with the use of the radial tour <doi:10.32614/RJ-2020-027>;
<doi:10.1080/10618600.1997.10474754>.
Author: Nicholas Spyrison [aut, cre]
Maintainer: Nicholas Spyrison <spyrison@gmail.com>
Diff between cheem versions 0.4.0.0 dated 2023-11-08 and 0.4.1 dated 2025-08-26
DESCRIPTION | 9 MD5 | 20 NEWS.md | 5 R/9_data.r | 4 build/vignette.rds |binary inst/doc/getting-started-with-cheem.R | 338 +++++----- inst/doc/getting-started-with-cheem.html | 286 ++++---- inst/shiny_apps/cheem/rsconnect/shinyapps.io/nicholas-spyrison/cheem.dcf | 6 inst/shiny_apps/cheem/ui.r | 2 man/amesHousing2018.Rd | 4 tests/testthat/test-2_visualization.r | 4 11 files changed, 341 insertions(+), 337 deletions(-)
Title: Linked Inference of Genomic Experimental Relationships
Description: Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
Author: Joshua Welch [aut],
Yichen Wang [aut, cre],
Chao Gao [aut],
Jialin Liu [aut],
Joshua Sodicoff [aut, ctb],
Velina Kozareva [aut, ctb],
Evan Macosko [aut, ctb],
Paul Hoffman [ctb],
Ilya Korsunsky [ctb],
Robert Lee [ctb],
Andrew Robbins [ctb]
Maintainer: Yichen Wang <wayichen@umich.edu>
Diff between rliger versions 2.2.0 dated 2025-05-01 and 2.2.1 dated 2025-08-26
rliger-2.2.0/rliger/R/DoubletFinder.R |only rliger-2.2.1/rliger/DESCRIPTION | 8 +- rliger-2.2.1/rliger/MD5 | 70 ++++++++++--------- rliger-2.2.1/rliger/NAMESPACE | 4 + rliger-2.2.1/rliger/NEWS.md | 19 ++--- rliger-2.2.1/rliger/R/ATAC.R | 2 rliger-2.2.1/rliger/R/DEG_marker.R | 4 + rliger-2.2.1/rliger/R/classConversion.R | 2 rliger-2.2.1/rliger/R/clustering.R | 4 - rliger-2.2.1/rliger/R/data.R | 13 +++ rliger-2.2.1/rliger/R/dotplot.R | 4 + rliger-2.2.1/rliger/R/downsample.R | 2 rliger-2.2.1/rliger/R/embedding.R | 2 rliger-2.2.1/rliger/R/factorGSEA.R |only rliger-2.2.1/rliger/R/factorMarker.R | 2 rliger-2.2.1/rliger/R/ggplotting.R | 2 rliger-2.2.1/rliger/R/import.R | 48 ++++++++++--- rliger-2.2.1/rliger/R/suggestK.R | 2 rliger-2.2.1/rliger/README.md | 3 rliger-2.2.1/rliger/build/partial.rdb |binary rliger-2.2.1/rliger/build/vignette.rds |binary rliger-2.2.1/rliger/data/ccGeneHuman.rda |only rliger-2.2.1/rliger/man/ccGeneHuman.Rd |only rliger-2.2.1/rliger/man/downsample.Rd | 2 rliger-2.2.1/rliger/man/factorGSEA.Rd |only rliger-2.2.1/rliger/man/getFactorMarkers.Rd | 2 rliger-2.2.1/rliger/man/imputeKNN.Rd | 2 rliger-2.2.1/rliger/man/ligerToSeurat.Rd | 2 rliger-2.2.1/rliger/man/plot.factorGSEA.Rd |only rliger-2.2.1/rliger/man/plotClusterFactorDot.Rd | 2 rliger-2.2.1/rliger/man/plotClusterGeneDot.Rd | 2 rliger-2.2.1/rliger/man/plotMarkerHeatmap.Rd | 2 rliger-2.2.1/rliger/man/plotPairwiseDEGHeatmap.Rd | 2 rliger-2.2.1/rliger/man/print.factorGSEA.Rd |only rliger-2.2.1/rliger/man/runCluster.Rd | 4 - rliger-2.2.1/rliger/man/runTSNE.Rd | 2 rliger-2.2.1/rliger/man/suggestK.Rd | 2 rliger-2.2.1/rliger/man/summary.factorGSEA.Rd |only rliger-2.2.1/rliger/tests/testthat/test_downstream.R | 4 - rliger-2.2.1/rliger/tests/testthat/test_object.R | 1 40 files changed, 158 insertions(+), 62 deletions(-)
Title: Tools to Fit Flexible Parametric Curves
Description: Model selection tools and 'selfStart' functions to fit parametric curves in 'nls', 'nlsList' and 'nlme' frameworks.
Author: Stephen Oswald [aut, cre]
Maintainer: Stephen Oswald <steve.oswald@psu.edu>
Diff between FlexParamCurve versions 1.5-6 dated 2023-12-10 and 1.5-7 dated 2025-08-26
DESCRIPTION | 8 ++--- MD5 | 40 ++++++++++++++-------------- R/extraF.R | 12 ++++---- R/extraF.nls.R | 14 ++++----- R/get.mod.R | 8 ++--- R/pn.mod.compare.R | 26 +++++++++--------- R/pn.modselect.step.R | 30 ++++++++++----------- inst/NEWS.Rd | 6 ++++ man/FlexParamCurve-package.Rd | 10 +++---- man/SSposnegRichards.Rd | 60 +++++++++++++++++++++--------------------- man/change.pnparameters.Rd | 22 +++++++-------- man/extraF.Rd | 14 ++++----- man/extraF.nls.Rd | 14 ++++----- man/get.mod.Rd | 4 +- man/logist.data.Rd | 4 +- man/modpar.Rd | 48 ++++++++++++++++----------------- man/pn.mod.compare.Rd | 34 +++++++++++------------ man/pn.modselect.step.Rd | 34 +++++++++++------------ man/posneg.data.Rd | 4 +- man/posnegRichards.calls.Rd | 12 ++++---- man/posnegRichards.eqn.Rd | 20 +++++++------- 21 files changed, 215 insertions(+), 209 deletions(-)
More information about FlexParamCurve at CRAN
Permanent link
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below
a project root. The 'root' of a project is defined as a directory that
matches a certain criterion, e.g., it contains a certain regular file.
Author: Kirill Mueller [aut, cre]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between rprojroot versions 2.1.0 dated 2025-07-12 and 2.1.1 dated 2025-08-26
DESCRIPTION | 6 +- MD5 | 16 +++---- NEWS.md | 11 +++++ R/root.R | 14 +++--- build/vignette.rds |binary inst/doc/rprojroot.html | 72 +++++++++++++++++------------------ man/criteria.Rd | 2 tests/testthat/_snaps/root.md | 85 ++++++++++++++++++++++-------------------- tests/testthat/test-root.R | 7 +++ 9 files changed, 119 insertions(+), 94 deletions(-)
Title: Mixed Logistic Regression for Genome-Wide Analysis Studies
(GWAS)
Description: Fast approximate methods for mixed logistic regression in genome-wide analysis studies (GWAS).
Two computationnally efficient methods are proposed for obtaining effect size estimates (beta) in
Mixed Logistic Regression in GWAS: the Approximate Maximum Likelihood Estimate (AMLE), and the Offset
method. The wald test obtained with AMLE is identical to the score test. Data can be genotype matrices
in plink format, or dosage (VCF files). The methods are described in details in
Milet et al (2020) <doi:10.1101/2020.01.17.910109>.
Author: Herve Perdry [cre, aut],
Jacqueline Milet [aut]
Maintainer: Herve Perdry <herve.perdry@universite-paris-saclay.fr>
Diff between milorGWAS versions 0.7 dated 2024-06-21 and 0.7.1 dated 2025-08-26
milorGWAS-0.7.1/milorGWAS/DESCRIPTION | 18 milorGWAS-0.7.1/milorGWAS/MD5 | 18 milorGWAS-0.7.1/milorGWAS/NAMESPACE | 21 milorGWAS-0.7.1/milorGWAS/NEWS.md | 2 milorGWAS-0.7.1/milorGWAS/R/RcppExports.R | 22 milorGWAS-0.7.1/milorGWAS/R/zzz.r |only milorGWAS-0.7.1/milorGWAS/build/vignette.rds |binary milorGWAS-0.7.1/milorGWAS/inst/doc/milorGWAS.R | 52 - milorGWAS-0.7.1/milorGWAS/inst/doc/milorGWAS.html | 268 +++++----- milorGWAS-0.7.1/milorGWAS/inst/include/milorGWAS/snp_filler_dosages.h | 2 milorGWAS-0.7/milorGWAS/inst/include/milorGWAS/matrix-varia.cpp |only 11 files changed, 225 insertions(+), 178 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.5.0 dated 2025-04-28 and 1.6.0 dated 2025-08-26
grates-1.5.0/grates/README.md |only grates-1.6.0/grates/DESCRIPTION | 9 - grates-1.6.0/grates/MD5 | 105 +++++++++--------- grates-1.6.0/grates/NEWS.md | 12 ++ grates-1.6.0/grates/R/accessors.R | 2 grates-1.6.0/grates/R/boundaries.R | 3 grates-1.6.0/grates/R/epiweek-class.R | 59 ++-------- grates-1.6.0/grates/R/epiweek-scale.R | 9 + grates-1.6.0/grates/R/grates-package.R |only grates-1.6.0/grates/R/int_period-class.R | 8 - grates-1.6.0/grates/R/int_period-scale.R | 7 - grates-1.6.0/grates/R/isoweek-class.R | 65 +++-------- grates-1.6.0/grates/R/isoweek-scale.R | 13 +- grates-1.6.0/grates/R/month-class.R | 28 ++-- grates-1.6.0/grates/R/month-scale.R | 11 + grates-1.6.0/grates/R/month-utils.R | 2 grates-1.6.0/grates/R/period-class.R | 50 +++++--- grates-1.6.0/grates/R/period-scale.R | 20 ++- grates-1.6.0/grates/R/utils.R | 20 +++ grates-1.6.0/grates/R/year-class.R | 59 ++++------ grates-1.6.0/grates/R/year-scale.R | 11 + grates-1.6.0/grates/R/yearmonth-class.R | 58 ++------- grates-1.6.0/grates/R/yearmonth-scale.R | 18 ++- grates-1.6.0/grates/R/yearquarter-class.R | 58 ++------- grates-1.6.0/grates/R/yearquarter-scale.R | 17 ++ grates-1.6.0/grates/R/yearweek-class.R | 74 +++++------- grates-1.6.0/grates/R/yearweek-scale.R | 15 +- grates-1.6.0/grates/build/vignette.rds |binary grates-1.6.0/grates/inst/doc/grates.Rmd | 19 +-- grates-1.6.0/grates/inst/doc/grates.html | 41 +++---- grates-1.6.0/grates/man/epiweek_class.Rd | 2 grates-1.6.0/grates/man/grates-package.Rd |only grates-1.6.0/grates/man/int_period_class.Rd | 2 grates-1.6.0/grates/man/isoweek_class.Rd | 7 - grates-1.6.0/grates/man/month_class.Rd | 2 grates-1.6.0/grates/man/period_class.Rd | 22 +-- grates-1.6.0/grates/man/print.grates_period.Rd | 5 grates-1.6.0/grates/man/scale_x_grates_epiweek.Rd | 2 grates-1.6.0/grates/man/scale_x_grates_isoweek.Rd | 2 grates-1.6.0/grates/man/scale_x_grates_yearweek.Rd | 2 grates-1.6.0/grates/man/year_class.Rd | 2 grates-1.6.0/grates/man/yearmonth_class.Rd | 2 grates-1.6.0/grates/man/yearquarter_class.Rd | 2 grates-1.6.0/grates/tests/testthat/test-epiweek.R | 32 ++--- grates-1.6.0/grates/tests/testthat/test-int_period.R | 36 +++--- grates-1.6.0/grates/tests/testthat/test-isoweek.R | 32 ++--- grates-1.6.0/grates/tests/testthat/test-month.R | 38 +++--- grates-1.6.0/grates/tests/testthat/test-period.R | 56 +++++++-- grates-1.6.0/grates/tests/testthat/test-plots.R | 18 +-- grates-1.6.0/grates/tests/testthat/test-refactoring.R | 12 +- grates-1.6.0/grates/tests/testthat/test-year.R | 31 ++--- grates-1.6.0/grates/tests/testthat/test-yearmonth.R | 35 ++---- grates-1.6.0/grates/tests/testthat/test-yearquarter.R | 37 +++--- grates-1.6.0/grates/tests/testthat/test-yearweek.R | 40 +++--- grates-1.6.0/grates/vignettes/grates.Rmd | 19 +-- 55 files changed, 622 insertions(+), 609 deletions(-)
Title: Static and Dynamic 3D and Editable Interactive Plots for the
'vegan' Package
Description: Static and dynamic 3D plots to be used with ordination
results and in diversity analysis, especially with the vegan package.
Author: Jari Oksanen [aut, cre],
Roeland Kindt [aut],
Gavin L. Simpson [aut],
Duncan Murdoch [ctb]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan3d versions 1.4-0 dated 2025-02-20 and 1.4-1 dated 2025-08-26
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/orditkplot.R | 8 +++++++- build/partial.rdb |binary inst/NEWS.md | 8 ++++++++ 6 files changed, 25 insertions(+), 9 deletions(-)
Title: Calculate Metrics for Trauma System Performance
Description: Hospitals, hospital systems, and even trauma systems that
provide care to injured patients may not be aware of robust metrics
that can help gauge the efficacy of their programs in saving the lives
of injured patients. 'traumar' provides robust functions driven by
the academic literature to automate the calculation of relevant
metrics to individuals desiring to measure the performance of their
trauma center or even a trauma system. 'traumar' also provides some
helper functions for the data analysis journey. Users can refer to the
following publications for descriptions of the methods used in
'traumar'. TRISS methodology, including probability of survival, and
the W, M, and Z Scores - Flora (1978)
<doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987,
PMID:3106646), Llullaku et al. (2009) <doi:10.1186/1749-7922-4-2>,
Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974,
PMID:4814394), and Champion et al. (1989)
<doi:10.1097/00005373-198905000- [...truncated...]
Author: Nicolas Foss [aut, cre],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between traumar versions 1.2.1 dated 2025-06-24 and 1.2.2 dated 2025-08-26
DESCRIPTION | 6 ++-- MD5 | 20 +++++++------- NEWS.md | 5 +++ R/non_linear_bins.R | 38 ++++++++++++++++++++------- R/probability_of_survival.R | 4 +- R/relative_mortality.R | 56 +++++++++++++++++++++++++++++------------ README.md | 23 ++++++++++------ man/nonlinear_bins.Rd | 44 ++++++++++++++++++++++---------- man/probability_of_survival.Rd | 4 +- man/rm_bin_summary.Rd | 28 ++++++++++++++------ man/rmm.Rd | 28 ++++++++++++++------ 11 files changed, 176 insertions(+), 80 deletions(-)
Title: Survey Standard Error Estimation for Cumulated Estimates and
their Differences in Complex Panel Designs
Description: Calculate point estimates and their standard errors in complex household surveys using bootstrap replicates. Bootstrapping considers survey design with a rotating panel. A comprehensive description of the methodology can be found under <https://statistikat.github.io/surveysd/articles/methodology.html>.
Author: Johannes Gussenbauer [aut, cre],
Alexander Kowarik [aut] ,
Eileen Vattheuer [aut],
Gregor de Cillia [aut],
Matthias Till [ctb]
Maintainer: Johannes Gussenbauer <Johannes.Gussenbauer@statistik.gv.at>
Diff between surveysd versions 1.3.1 dated 2022-12-19 and 2.0.0 dated 2025-08-26
surveysd-1.3.1/surveysd/vignettes/runtimeTests.R |only surveysd-2.0.0/surveysd/DESCRIPTION | 14 surveysd-2.0.0/surveysd/MD5 | 93 surveysd-2.0.0/surveysd/NAMESPACE | 7 surveysd-2.0.0/surveysd/NEWS.md | 39 surveysd-2.0.0/surveysd/R/RcppExports.R | 6 surveysd-2.0.0/surveysd/R/calc.stError.R | 791 ++-- surveysd-2.0.0/surveysd/R/demo.eusilc.R | 2 surveysd-2.0.0/surveysd/R/draw.bootstrap.R | 330 - surveysd-2.0.0/surveysd/R/get.selection.R |only surveysd-2.0.0/surveysd/R/helpers.R | 69 surveysd-2.0.0/surveysd/R/ipf.r | 402 +- surveysd-2.0.0/surveysd/R/print.R | 11 surveysd-2.0.0/surveysd/R/print_summary.ipf.R |only surveysd-2.0.0/surveysd/R/recalib.R | 200 - surveysd-2.0.0/surveysd/R/rescaled.bootstrap.R | 981 +++- surveysd-2.0.0/surveysd/R/summary.ipf.R |only surveysd-2.0.0/surveysd/README.md | 29 surveysd-2.0.0/surveysd/build/partial.rdb |binary surveysd-2.0.0/surveysd/build/vignette.rds |binary surveysd-2.0.0/surveysd/inst/doc/error_estimation.R | 34 surveysd-2.0.0/surveysd/inst/doc/error_estimation.Rmd | 100 surveysd-2.0.0/surveysd/inst/doc/error_estimation.html | 1970 ++++++++-- surveysd-2.0.0/surveysd/inst/doc/ipf.R | 6 surveysd-2.0.0/surveysd/inst/doc/ipf.html | 252 - surveysd-2.0.0/surveysd/inst/doc/methodology.R | 2 surveysd-2.0.0/surveysd/inst/doc/methodology.html | 3 surveysd-2.0.0/surveysd/inst/doc/raowu.R |only surveysd-2.0.0/surveysd/inst/doc/raowu.Rmd |only surveysd-2.0.0/surveysd/inst/doc/raowu.html |only surveysd-2.0.0/surveysd/man/calc.stError.Rd | 46 surveysd-2.0.0/surveysd/man/computeFrac.Rd | 3 surveysd-2.0.0/surveysd/man/draw.bootstrap.Rd | 82 surveysd-2.0.0/surveysd/man/get.selection.Rd |only surveysd-2.0.0/surveysd/man/ipf.Rd | 9 surveysd-2.0.0/surveysd/man/print.summary.ipf.Rd |only surveysd-2.0.0/surveysd/man/recalib.Rd | 46 surveysd-2.0.0/surveysd/man/rescaled.bootstrap.Rd | 75 surveysd-2.0.0/surveysd/man/summary.ipf.Rd |only surveysd-2.0.0/surveysd/src/RcppExports.cpp | 16 surveysd-2.0.0/surveysd/src/compute_linear.cpp | 109 surveysd-2.0.0/surveysd/src/gm_mean.cpp | 2 surveysd-2.0.0/surveysd/src/ipu_step.cpp | 4 surveysd-2.0.0/surveysd/tests/testthat/Rplots.pdf |binary surveysd-2.0.0/surveysd/tests/testthat/test_calcstError.R | 22 surveysd-2.0.0/surveysd/tests/testthat/test_calcstError_long.R | 10 surveysd-2.0.0/surveysd/tests/testthat/test_drawbootstrap.R | 36 surveysd-2.0.0/surveysd/tests/testthat/test_ipf.R | 22 surveysd-2.0.0/surveysd/tests/testthat/test_recalib.R | 10 surveysd-2.0.0/surveysd/tests/testthat/test_rescaledbootstrap.R | 27 surveysd-2.0.0/surveysd/vignettes/error_estimation.Rmd | 100 surveysd-2.0.0/surveysd/vignettes/raowu.Rmd |only surveysd-2.0.0/surveysd/vignettes/surveysd.html | 162 53 files changed, 4485 insertions(+), 1637 deletions(-)
Title: A Raster Where Cells are Generic Objects
Description: A S4 class has been created such that complex operations can be
executed on each cell of a raster map. The raster of objects contains a raster map with the addition of a list of generic objects: one
object for each raster cells. It allows to write few lines of R code for complex
map algebra. Two environmental applications about frequency analysis of raster
map of precipitation and creation of a raster map of soil water retention curves
have been presented.
Author: Emanuele Cordano [aut, cre]
Maintainer: Emanuele Cordano <emanuele.cordano@gmail.com>
Diff between rasterList versions 0.5.20 dated 2023-08-17 and 0.5.21 dated 2025-08-26
DESCRIPTION | 10 ++-- MD5 | 26 +++++------ R/AAAClasses.R | 6 +- R/raster.R | 2 R/rasterList-package.R | 10 ++-- R/rasterList.R | 2 R/stack.R | 6 +- build/vignette.rds |binary inst/doc/rasterList_vignette_004.html | 78 ++++++++++++++++++++-------------- man/RasterList-Package.Rd | 22 +++++++-- man/RasterList-class.Rd | 6 +- man/raster.Rd | 2 man/rasterList.Rd | 2 man/stack.Rd | 6 +- 14 files changed, 104 insertions(+), 74 deletions(-)
Title: Connector Between 'mlr3' and 'OpenML'
Description: Provides an interface to 'OpenML.org' to list and download
machine learning data, tasks and experiments. The 'OpenML' objects can
be automatically converted to 'mlr3' objects. For a more
sophisticated interface with more upload options, see
the 'OpenML' package.
Author: Michel Lang [aut] ,
Sebastian Fischer [cre, aut]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3oml versions 0.10.1 dated 2025-07-24 and 0.11.0 dated 2025-08-26
DESCRIPTION | 8 ++-- MD5 | 14 ++++--- NAMESPACE | 1 NEWS.md | 6 +++ R/list_oml_collections.R |only build/partial.rdb |binary man/list_oml.Rd | 53 +++++++++++++++++++---------- man/mlr3oml-package.Rd | 2 - tests/testthat/test_list_oml_collections.R |only 9 files changed, 55 insertions(+), 29 deletions(-)
Title: Designing Multi-Arm Multi-Stage Studies
Description: Designing multi-arm multi-stage studies with (asymptotically) normal endpoints and known variance.
Author: Thomas Jaki [aut, cre] ,
Dominique-Laurent Couturier [aut] ,
Dominic Magirr [aut],
Nikita Mozgunov [aut] ,
Philip Pallmann [aut]
Maintainer: Thomas Jaki <thomas.jaki@pm.me>
Diff between MAMS versions 3.0.2 dated 2025-06-05 and 3.0.3 dated 2025-08-26
DESCRIPTION | 8 +++---- MD5 | 23 +++++++++++++--------- R/MAMS-package.R | 56 +++++++++++++++++++++++++++++++++++++++++++++++++++--- R/dtl.R | 12 +++++++---- R/generic.R | 8 ++++--- R/sep.R | 21 ++++++++++++++------ R/simultaneous.R | 8 +++---- build/partial.rdb |binary inst/NEWS | 17 +++++++++++----- inst/tests2 |only man/MAMS.Rd | 29 +++++++++++++++++++++++---- 11 files changed, 139 insertions(+), 43 deletions(-)
Title: Estimation and Testing for a Lognormal-Pareto Mixture
Description: Estimates a lognormal-Pareto mixture by means of the Expectation-Conditional-Maximization-Either algorithm and by maximizing the profile likelihood function. A likelihood ratio test for discriminating between lognormal and Pareto tail is also implemented. See Bee, M. (2022) <doi:10.1007/s11634-022-00497-4>.
Author: Marco Bee [aut, cre]
Maintainer: Marco Bee <marco.bee@unitn.it>
Diff between LNPar versions 1.1.1 dated 2025-04-02 and 1.1.2 dated 2025-08-26
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++--------- NEWS.md | 2 - R/ECMEBoot.R | 2 - R/LPfitEM.R | 10 ++++----- R/rLnormParMix.R | 54 ++++++++++++++++++++++++++-------------------------- build/partial.rdb |binary man/ECMEBoot.Rd | 2 - man/LPfitEM.Rd | 2 - man/rLnormParMix.Rd | 4 +-- 10 files changed, 51 insertions(+), 51 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), the iterated GMM and continuous updated estimator (Hansen, Eaton and Yaron 1996; <doi:10.2307/1392442>) and several methods that belong to the Generalized Empirical Likelihood family of estimators (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>).
Author: Pierre Chausse [aut, cre]
Maintainer: Pierre Chausse <pchausse@uwaterloo.ca>
Diff between gmm versions 1.8 dated 2023-06-06 and 1.9-1 dated 2025-08-26
DESCRIPTION | 15 +++--- MD5 | 50 ++++++++++----------- R/Methods.sysGmm.R | 3 - R/gmm.R | 54 +++++++++++++++++++++++ R/momentEstim.R | 112 ++++++++++++++++++++++++++---------------------- build/partial.rdb |binary build/vignette.rds |binary data/Finance.rda |binary data/Growth.rda |binary data/nsw.rda |binary data/wage.rda |binary inst/doc/gmm_with_R.R | 36 +++++++-------- inst/doc/gmm_with_R.pdf |binary man/ATEgel.Rd | 10 ++-- man/bwWilhelm.Rd | 6 +- man/estfun.Rd | 6 +- man/gel.Rd | 20 ++++---- man/getLamb.Rd | 8 +-- man/gmm.Rd | 20 ++++---- man/growth.Rd | 3 - man/plot.Rd | 4 - man/smoothG.Rd | 4 - man/sysGmm.Rd | 8 +-- man/tsls.Rd | 6 +- man/vcov.Rd | 2 man/wage.Rd | 2 26 files changed, 216 insertions(+), 153 deletions(-)
Title: Semiparametric Least Squares Inference for Causal Effects
Description: Several causal effects are measured using least squares regressions and basis function approximations. Backward and forward selection methods based on different criteria are used to select the basis functions.
Author: Pierre Chausse Developer [aut, cre],
Mihai Giurcanu Developer [aut]
Maintainer: Pierre Chausse Developer <pchausse@uwaterloo.ca>
Diff between causalSLSE versions 0.3-1 dated 2024-01-17 and 0.4 dated 2025-08-26
causalSLSE-0.3-1/causalSLSE/man/extract-causalslse-method.Rd |only causalSLSE-0.3-1/causalSLSE/man/extract-slseFit-method.Rd |only causalSLSE-0.4/causalSLSE/DESCRIPTION | 10 causalSLSE-0.4/causalSLSE/MD5 | 42 +- causalSLSE-0.4/causalSLSE/NAMESPACE | 10 causalSLSE-0.4/causalSLSE/R/Fcslse.R | 5 causalSLSE-0.4/causalSLSE/R/altCausal.R |only causalSLSE-0.4/causalSLSE/R/cslse.R | 24 - causalSLSE-0.4/causalSLSE/R/slse.R | 149 +++++-- causalSLSE-0.4/causalSLSE/build/vignette.rds |binary causalSLSE-0.4/causalSLSE/inst/doc/causalSLSE.R | 214 ++++++----- causalSLSE-0.4/causalSLSE/inst/doc/causalSLSE.Rmd | 61 +++ causalSLSE-0.4/causalSLSE/inst/doc/causalSLSE.pdf |binary causalSLSE-0.4/causalSLSE/man/altCausal.Rd |only causalSLSE-0.4/causalSLSE/man/causalSLSE.Rd | 2 causalSLSE-0.4/causalSLSE/man/cslseModel.Rd | 16 causalSLSE-0.4/causalSLSE/man/estSLSE.Rd | 2 causalSLSE-0.4/causalSLSE/man/extract-method.Rd |only causalSLSE-0.4/causalSLSE/man/llSplines.Rd | 2 causalSLSE-0.4/causalSLSE/man/predict.Rd | 2 causalSLSE-0.4/causalSLSE/man/slseKnots.Rd | 6 causalSLSE-0.4/causalSLSE/man/summary.Rd | 4 causalSLSE-0.4/causalSLSE/src/causal.f |only causalSLSE-0.4/causalSLSE/src/initcausal.c | 24 + causalSLSE-0.4/causalSLSE/vignettes/causalSLSE.Rmd | 61 +++ 25 files changed, 449 insertions(+), 185 deletions(-)
More information about spatialCatalogueViewer at CRAN
Permanent link
Title: 'Shiny' App Usage Telemetry
Description: Enables instrumentation of 'Shiny' apps for tracking
user session events such as input changes, browser type, and session
duration. These events can be sent to any of the available storage
backends and analyzed using the included 'Shiny' app to gain insights
about app usage and adoption.
Author: Andre Verissimo [aut, cre],
Kamil Zyla [aut],
Krystian Igras [aut],
Recle Vibal [aut],
Arun Kodati [aut],
Wahaduzzaman Khan [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Andre Verissimo <opensource+andre@appsilon.com>
Diff between shiny.telemetry versions 0.3.1 dated 2024-10-15 and 0.3.2 dated 2025-08-26
DESCRIPTION | 10 +- MD5 | 43 ++++++------ NEWS.md | 11 +++ R/analytics-app.R | 7 ++ R/auxiliary.R | 28 ++++++++ R/data-storage-log-file.R | 5 + R/data-storage-postgresql.R | 4 - R/prepare-admin-panel.R | 18 +++++ R/telemetry.R | 19 +++-- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/databases.R | 78 +++++++++++------------ inst/doc/databases.Rmd | 14 ++-- inst/doc/databases.html | 17 ++--- inst/doc/rhino.R | 6 - inst/doc/rhino.html | 39 +++++------ inst/doc/tracking-specific-input-id.html | 5 - inst/examples/app/instrumentation/user_stats.txt | 34 ++++++++++ inst/examples/mssql/README.md | 2 man/merge_excluded_regex.Rd |only tests/testthat/test-auxiliary_functions.R | 22 ++++++ tests/testthat/test-telemetry.R | 39 +++++++++++ vignettes/databases.Rmd | 14 ++-- 23 files changed, 292 insertions(+), 124 deletions(-)
More information about shiny.telemetry at CRAN
Permanent link
Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It allows to conveniently build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb] ,
Carson Zhang [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.3.0 dated 2025-07-07 and 0.3.1 dated 2025-08-26
DESCRIPTION | 10 ++-- MD5 | 67 ++++++++++++++--------------- NEWS.md | 11 ++++ R/CallbackSet.R | 7 +-- R/DataDescriptor.R | 10 ++-- R/LearnerTorch.R | 18 ++++++- R/LearnerTorchTabResNet.R | 3 - R/PipeOpTaskPreprocTorch.R | 6 +- R/PipeOpTorchBlock.R | 4 + R/PipeOpTorchFTTransformerBlock.R | 10 ++-- R/PipeOpTorchLoss.R | 1 R/PipeOpTorchMerge.R | 9 ++- R/PipeOpTorchTokenizer.R | 2 R/TorchDescriptor.R | 3 - R/TorchLoss.R | 2 R/cache.R | 6 +- R/lazy_tensor.R | 12 ++--- R/learner_torch_methods.R | 14 +++--- R/paramset_torchlearner.R | 8 ++- R/preprocess.R | 7 +-- R/shape.R | 3 - R/task_dataset.R | 2 R/utils.R | 5 +- build/partial.rdb |binary man/mlr_tasks_cifar.Rd | 2 tests/testthat/_snaps |only tests/testthat/helper_autotest.R | 3 - tests/testthat/helper_functions.R | 33 ++++---------- tests/testthat/test_CallbackSet.R | 2 tests/testthat/test_LearnerFTTransformer.R | 9 +++ tests/testthat/test_LearnerTorch.R | 5 ++ tests/testthat/test_PipeOpTorchBlock.R | 7 +++ tests/testthat/test_cache.R | 2 tests/testthat/test_lazy_tensor.R | 4 - tests/testthat/test_nn.R | 4 + 35 files changed, 175 insertions(+), 116 deletions(-)
Title: Fits Toxicokinetic Models to In Vivo PK Data Sets
Description: Takes in vivo toxicokinetic concentration-time data and fits
parameters of 1-compartment and 2-compartment models for each
chemical. These methods are described in detail in "Informatics for Toxicokinetics" (2025).
Author: John Wambaugh [aut, cre] ,
Caroline Ring [aut] ,
Gilberto Padilla Mercado [aut] ,
Chris Cook [aut]
Maintainer: John Wambaugh <wambaugh.john@epa.gov>
Diff between invivoPKfit versions 2.0.1 dated 2025-03-24 and 2.0.2 dated 2025-08-26
invivoPKfit-2.0.1/invivoPKfit/R/auc_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/check_params_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/cp_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/fill_params_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/get_params_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/get_params_1comp_fup.R |only invivoPKfit-2.0.1/invivoPKfit/R/get_starts_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/R/get_starts_1comp_fup.R |only invivoPKfit-2.0.1/invivoPKfit/R/pk_methods_get_settings_data_info.R |only invivoPKfit-2.0.1/invivoPKfit/R/pk_methods_get_stat_error_model.R |only invivoPKfit-2.0.1/invivoPKfit/R/pkproto_settings_data_info.R |only invivoPKfit-2.0.1/invivoPKfit/R/pkproto_stat_nca.R |only invivoPKfit-2.0.1/invivoPKfit/R/tkstats_1comp_cl.R |only invivoPKfit-2.0.1/invivoPKfit/data/model_1comp_cl_nonrest.rda |only invivoPKfit-2.0.1/invivoPKfit/data/model_1comp_cl_rest.rda |only invivoPKfit-2.0.1/invivoPKfit/data/model_1comp_fup.rda |only invivoPKfit-2.0.1/invivoPKfit/man/auc_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/check_params_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/cp_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/fill_params_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_params_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_params_1comp_fup.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_settings_data_info.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_settings_data_info.default.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_settings_data_info.pk.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_starts_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_starts_1comp_fup.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_stat_error_model.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_stat_error_model.default.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/get_stat_error_model.pk.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/model_1comp_cl_nonrest.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/model_1comp_cl_rest.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/model_1comp_fup.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/pk_add.pk_settings_data_info.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/settings_data_info.Rd |only invivoPKfit-2.0.1/invivoPKfit/man/tkstats_1comp_cl.Rd |only invivoPKfit-2.0.1/invivoPKfit/tests/testthat/test-get_tkstats.R |only invivoPKfit-2.0.2/invivoPKfit/DESCRIPTION | 26 invivoPKfit-2.0.2/invivoPKfit/MD5 | 468 invivoPKfit-2.0.2/invivoPKfit/NAMESPACE | 38 invivoPKfit-2.0.2/invivoPKfit/NEWS.md | 19 invivoPKfit-2.0.2/invivoPKfit/R/auc_1comp.R | 58 invivoPKfit-2.0.2/invivoPKfit/R/auc_2comp.R | 103 invivoPKfit-2.0.2/invivoPKfit/R/auc_flat.R | 6 invivoPKfit-2.0.2/invivoPKfit/R/auc_httk_gas_pbtk.R |only invivoPKfit-2.0.2/invivoPKfit/R/auto_units.R | 38 invivoPKfit-2.0.2/invivoPKfit/R/calc_nca.R | 115 invivoPKfit-2.0.2/invivoPKfit/R/calc_rmse.R | 4 invivoPKfit-2.0.2/invivoPKfit/R/calc_rsq.R | 4 invivoPKfit-2.0.2/invivoPKfit/R/check_group_hierarchy.R |only invivoPKfit-2.0.2/invivoPKfit/R/check_method.R | 24 invivoPKfit-2.0.2/invivoPKfit/R/check_newdata.R | 33 invivoPKfit-2.0.2/invivoPKfit/R/check_params_1comp.R | 26 invivoPKfit-2.0.2/invivoPKfit/R/check_params_2comp.R | 26 invivoPKfit-2.0.2/invivoPKfit/R/check_params_flat.R | 26 invivoPKfit-2.0.2/invivoPKfit/R/combined_sd.R | 29 invivoPKfit-2.0.2/invivoPKfit/R/conc_scale_use.R | 21 invivoPKfit-2.0.2/invivoPKfit/R/convert_summary_to_log10.R | 2 invivoPKfit-2.0.2/invivoPKfit/R/cp_1comp.R | 49 invivoPKfit-2.0.2/invivoPKfit/R/cp_2comp.R | 41 invivoPKfit-2.0.2/invivoPKfit/R/cp_2comp_dt.R | 12 invivoPKfit-2.0.2/invivoPKfit/R/cp_flat.R | 19 invivoPKfit-2.0.2/invivoPKfit/R/cp_httk_gas_pbtk.R |only invivoPKfit-2.0.2/invivoPKfit/R/data.R | 95 invivoPKfit-2.0.2/invivoPKfit/R/dlnorm_summary.R | 38 invivoPKfit-2.0.2/invivoPKfit/R/dnorm_summary.R | 39 invivoPKfit-2.0.2/invivoPKfit/R/fill_params_1comp.R | 24 invivoPKfit-2.0.2/invivoPKfit/R/fill_params_2comp.R | 27 invivoPKfit-2.0.2/invivoPKfit/R/fill_params_flat.R | 24 invivoPKfit-2.0.2/invivoPKfit/R/fit_group.R | 157 invivoPKfit-2.0.2/invivoPKfit/R/get_params_1comp.R | 313 invivoPKfit-2.0.2/invivoPKfit/R/get_params_2comp.R | 319 invivoPKfit-2.0.2/invivoPKfit/R/get_params_flat.R | 249 invivoPKfit-2.0.2/invivoPKfit/R/get_params_httk_gas_pbtk.R |only invivoPKfit-2.0.2/invivoPKfit/R/get_starts_1comp.R | 38 invivoPKfit-2.0.2/invivoPKfit/R/get_starts_2comp.R | 69 invivoPKfit-2.0.2/invivoPKfit/R/get_starts_flat.R | 101 invivoPKfit-2.0.2/invivoPKfit/R/get_starts_httk_gas_pbtk.R |only invivoPKfit-2.0.2/invivoPKfit/R/globals.R | 373 invivoPKfit-2.0.2/invivoPKfit/R/helper_functions.R |only invivoPKfit-2.0.2/invivoPKfit/R/hessian_funs.R | 43 invivoPKfit-2.0.2/invivoPKfit/R/log_likelihood.R | 294 invivoPKfit-2.0.2/invivoPKfit/R/paste2.R | 5 invivoPKfit-2.0.2/invivoPKfit/R/pk.R | 223 invivoPKfit-2.0.2/invivoPKfit/R/pk_method_aafe.R | 82 invivoPKfit-2.0.2/invivoPKfit/R/pk_method_afe.R | 42 invivoPKfit-2.0.2/invivoPKfit/R/pk_method_dispatch.R | 50 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_AIC.R | 25 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_BIC.R | 29 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_add_pkproto.R | 146 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_coef.R | 90 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_coef_sd.R | 133 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_compare_models.R | 12 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_data_summary.R | 37 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_do_data_info.R | 129 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_do_fit.R | 665 - invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_do_prefit.R | 462 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_do_preprocess.R | 946 - invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_eval_tkstats.R | 143 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_fit_sigma.R |only invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_fold_error.R | 22 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_data_group.R | 24 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_data_sigma_group.R | 11 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_error_group.R | 20 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_fit.R | 89 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_hessian.R | 73 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_nca_group.R |only invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_settings_optimx.R | 2 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_settings_preprocess.R | 7 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_stat_model.R | 6 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_status.R | 4 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_tkstats.R | 263 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_get_winning_model.R | 77 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_logLik.R | 174 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_nca.R | 40 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_plot.R | 469 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_predict.R | 212 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_print.R | 15 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_residuals.R | 49 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_rmse.R | 186 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_rsq.R | 48 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_summary.R | 45 invivoPKfit-2.0.2/invivoPKfit/R/pk_methods_twofold_test.R | 155 invivoPKfit-2.0.2/invivoPKfit/R/pk_model.R | 176 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_facet_data.R | 33 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_mapping.R | 28 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_scale_data.R | 36 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_settings_optimx.R | 10 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_settings_preprocess.R | 19 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_stat_error_model.R | 26 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_stat_model.R | 4 invivoPKfit-2.0.2/invivoPKfit/R/pkproto_stat_nca_group.R |only invivoPKfit-2.0.2/invivoPKfit/R/pkproto_stat_preprocess_groups.R |only invivoPKfit-2.0.2/invivoPKfit/R/recalculate_httk_pbtk_params.R |only invivoPKfit-2.0.2/invivoPKfit/R/rename2_cvt.R | 38 invivoPKfit-2.0.2/invivoPKfit/R/tkstats_1comp.R | 69 invivoPKfit-2.0.2/invivoPKfit/R/tkstats_2comp.R | 70 invivoPKfit-2.0.2/invivoPKfit/R/tkstats_flat.R | 2 invivoPKfit-2.0.2/invivoPKfit/R/tkstats_httk_gas_pbtk.R |only invivoPKfit-2.0.2/invivoPKfit/R/transformed_params_2comp.R | 2 invivoPKfit-2.0.2/invivoPKfit/README.md | 205 invivoPKfit-2.0.2/invivoPKfit/data/cvt.rda |binary invivoPKfit-2.0.2/invivoPKfit/data/cvt_2.0.0.rda |only invivoPKfit-2.0.2/invivoPKfit/data/cvt_date.rda |binary invivoPKfit-2.0.2/invivoPKfit/data/cvtdb_original.rda |only invivoPKfit-2.0.2/invivoPKfit/data/model_1comp.rda |binary invivoPKfit-2.0.2/invivoPKfit/data/model_2comp.rda |binary invivoPKfit-2.0.2/invivoPKfit/data/model_flat.rda |binary invivoPKfit-2.0.2/invivoPKfit/data/model_httk_gas_pbtk.rda |only invivoPKfit-2.0.2/invivoPKfit/inst/doc/main_vignette.R | 299 invivoPKfit-2.0.2/invivoPKfit/inst/doc/main_vignette.Rmd | 370 invivoPKfit-2.0.2/invivoPKfit/inst/doc/main_vignette.html | 599 - invivoPKfit-2.0.2/invivoPKfit/inst/doc/mainfit.html | 4 invivoPKfit-2.0.2/invivoPKfit/inst/doc/manuscript2024_final.R | 3962 ++++--- invivoPKfit-2.0.2/invivoPKfit/inst/doc/manuscript2024_final.Rmd | 4124 ++++--- invivoPKfit-2.0.2/invivoPKfit/inst/doc/manuscript2024_final.html | 5172 +++++----- invivoPKfit-2.0.2/invivoPKfit/man/AAFE.pk.Rd | 6 invivoPKfit-2.0.2/invivoPKfit/man/AFE.pk.Rd | 6 invivoPKfit-2.0.2/invivoPKfit/man/AIC.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/BIC.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/adjust_model_name.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/auc_1comp.Rd | 24 invivoPKfit-2.0.2/invivoPKfit/man/auc_2comp.Rd | 64 invivoPKfit-2.0.2/invivoPKfit/man/auc_flat.Rd | 16 invivoPKfit-2.0.2/invivoPKfit/man/auc_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/auto_units.Rd | 32 invivoPKfit-2.0.2/invivoPKfit/man/calc_nca.Rd | 70 invivoPKfit-2.0.2/invivoPKfit/man/calc_rmse.Rd | 8 invivoPKfit-2.0.2/invivoPKfit/man/calc_rsq.Rd | 8 invivoPKfit-2.0.2/invivoPKfit/man/check_group_hierarchy.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/check_method.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/check_params_1comp.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/coef.pk.Rd | 19 invivoPKfit-2.0.2/invivoPKfit/man/coef_sd.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/coef_sd.default.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/coef_sd.pk.Rd | 7 invivoPKfit-2.0.2/invivoPKfit/man/convert_summary_to_log10.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/cp_1comp.Rd | 28 invivoPKfit-2.0.2/invivoPKfit/man/cp_2comp.Rd | 15 invivoPKfit-2.0.2/invivoPKfit/man/cp_2comp_dt.Rd | 10 invivoPKfit-2.0.2/invivoPKfit/man/cp_flat.Rd | 19 invivoPKfit-2.0.2/invivoPKfit/man/cp_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/cvt.Rd | 20 invivoPKfit-2.0.2/invivoPKfit/man/cvt_2.0.0.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/cvtdb_original.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/data_summary.pk.Rd | 27 invivoPKfit-2.0.2/invivoPKfit/man/do_data_info.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/do_fit.pk.Rd | 24 invivoPKfit-2.0.2/invivoPKfit/man/do_prefit.pk.Rd | 18 invivoPKfit-2.0.2/invivoPKfit/man/do_preprocess.pk.Rd | 53 invivoPKfit-2.0.2/invivoPKfit/man/eval_tkstats.pk.Rd | 35 invivoPKfit-2.0.2/invivoPKfit/man/facet_data.Rd | 23 invivoPKfit-2.0.2/invivoPKfit/man/figures |only invivoPKfit-2.0.2/invivoPKfit/man/fill_params_1comp.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/fill_params_2comp.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/fill_params_flat.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/fit_group.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/fit_sigma.pk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/fold_error.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/get_data_group.pk.Rd | 8 invivoPKfit-2.0.2/invivoPKfit/man/get_data_sigma_group.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/get_data_sigma_group.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/get_error_group.pk.Rd | 8 invivoPKfit-2.0.2/invivoPKfit/man/get_hessian.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/get_nca_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/get_nca_group.default.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/get_nca_group.pk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/get_params_1comp.Rd | 129 invivoPKfit-2.0.2/invivoPKfit/man/get_params_2comp.Rd | 127 invivoPKfit-2.0.2/invivoPKfit/man/get_params_flat.Rd | 99 invivoPKfit-2.0.2/invivoPKfit/man/get_params_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/get_starts_1comp.Rd | 70 invivoPKfit-2.0.2/invivoPKfit/man/get_starts_2comp.Rd | 125 invivoPKfit-2.0.2/invivoPKfit/man/get_starts_flat.Rd | 43 invivoPKfit-2.0.2/invivoPKfit/man/get_starts_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/get_tkstats.pk.Rd | 6 invivoPKfit-2.0.2/invivoPKfit/man/get_winning_model.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/is.pk_model.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/log_likelihood.Rd | 28 invivoPKfit-2.0.2/invivoPKfit/man/mapping.Rd | 25 invivoPKfit-2.0.2/invivoPKfit/man/midpt_log10.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/model_1comp.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/model_2comp.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/model_flat.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/model_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/nca.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/pk.Rd | 167 invivoPKfit-2.0.2/invivoPKfit/man/pk_add.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/pk_add.pk_facet_data.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/pk_add.pk_loq_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/pk_add.pk_nca_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/pk_add.pk_sd_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/pk_model.Rd | 25 invivoPKfit-2.0.2/invivoPKfit/man/plot.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/post_name_value.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/predict.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/pseudo_cvt.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/recalculate_httk_pbtk_params.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/rename2_cvt.Rd | 8 invivoPKfit-2.0.2/invivoPKfit/man/residuals.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/rmse.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/rsq.pk.Rd | 2 invivoPKfit-2.0.2/invivoPKfit/man/scale_conc.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/man/set_params_optimize.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/set_params_starts.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/settings_optimx.Rd | 11 invivoPKfit-2.0.2/invivoPKfit/man/settings_preprocess.Rd | 19 invivoPKfit-2.0.2/invivoPKfit/man/stat_error_model.Rd | 12 invivoPKfit-2.0.2/invivoPKfit/man/stat_loq_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/stat_nca_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/stat_sd_group.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/tkstats_1comp.Rd | 55 invivoPKfit-2.0.2/invivoPKfit/man/tkstats_2comp.Rd | 59 invivoPKfit-2.0.2/invivoPKfit/man/tkstats_httk_gas_pbtk.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/toggle_clearance_mode.Rd |only invivoPKfit-2.0.2/invivoPKfit/man/transformed_params_2comp.Rd | 10 invivoPKfit-2.0.2/invivoPKfit/man/twofold_test.pk.Rd | 4 invivoPKfit-2.0.2/invivoPKfit/tests/testthat.R | 24 invivoPKfit-2.0.2/invivoPKfit/tests/testthat/example_fitted_data.rds |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-auto_units.R | 72 invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-check_params.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk.R | 128 invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_method_aafe.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_method_afe.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_AIC.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_coef_sd.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_eval_tkstats.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_fold_error.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_data_info.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_data_original.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_data_sigma_group.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_fit.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_mapping.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_prefit.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_get_status.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_logLik.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_predict.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_residuals.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_rmse.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_methods_rsq.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pk_model.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pkmethods_do_fit.R |only invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pkmethods_preprocess_data.R | 144 invivoPKfit-2.0.2/invivoPKfit/tests/testthat/test-pkproto_scale_data.R | 132 invivoPKfit-2.0.2/invivoPKfit/vignettes/main_vignette.Rmd | 370 invivoPKfit-2.0.2/invivoPKfit/vignettes/manuscript2024_final.Rmd | 4124 ++++--- 286 files changed, 16688 insertions(+), 13802 deletions(-)
Title: Makefile Generator for R Analytical Projects
Description: Creates and maintains a build process for complex analytic tasks in R.
Package allows to easily generate Makefile for the (GNU) 'make' tool, which drives the build process
by (in parallel) executing build commands in order to update results accordingly to given dependencies
on changed data or updated source files.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between rmake versions 1.1.0 dated 2018-08-30 and 1.2.0 dated 2025-08-26
rmake-1.1.0/rmake/R/visualize.R |only rmake-1.1.0/rmake/man/visualize.Rd |only rmake-1.2.0/rmake/DESCRIPTION | 25 ++ rmake-1.2.0/rmake/MD5 | 77 +++++--- rmake-1.2.0/rmake/NAMESPACE | 9 - rmake-1.2.0/rmake/NEWS.md | 13 + rmake-1.2.0/rmake/R/copyRule.R |only rmake-1.2.0/rmake/R/depRule.R |only rmake-1.2.0/rmake/R/expandTemplate.R | 89 +++++++--- rmake-1.2.0/rmake/R/knitrRule.R |only rmake-1.2.0/rmake/R/makefile.R | 21 +- rmake-1.2.0/rmake/R/markdownRule.R | 39 +++- rmake-1.2.0/rmake/R/offlineRule.R | 2 rmake-1.2.0/rmake/R/pipe.R | 9 - rmake-1.2.0/rmake/R/rRule.R | 16 + rmake-1.2.0/rmake/R/sanitizePath.R |only rmake-1.2.0/rmake/R/sanitizeSpaces.R |only rmake-1.2.0/rmake/R/subdirRule.R |only rmake-1.2.0/rmake/R/visualizeRules.R |only rmake-1.2.0/rmake/build |only rmake-1.2.0/rmake/inst |only rmake-1.2.0/rmake/man/copyRule.Rd |only rmake-1.2.0/rmake/man/defaultVars.Rd | 4 rmake-1.2.0/rmake/man/depRule.Rd |only rmake-1.2.0/rmake/man/expandTemplate.Rd | 36 +++- rmake-1.2.0/rmake/man/grapes-greater-than-greater-than-grapes.Rd | 2 rmake-1.2.0/rmake/man/knitrRule.Rd |only rmake-1.2.0/rmake/man/makefile.Rd | 26 ++ rmake-1.2.0/rmake/man/markdownRule.Rd | 13 - rmake-1.2.0/rmake/man/offlineRule.Rd | 2 rmake-1.2.0/rmake/man/rRule.Rd | 20 +- rmake-1.2.0/rmake/man/replaceVariables.Rd | 2 rmake-1.2.0/rmake/man/rmake-package.Rd | 22 +- rmake-1.2.0/rmake/man/rule.Rd | 17 + rmake-1.2.0/rmake/man/sanitizePath.Rd |only rmake-1.2.0/rmake/man/sanitizeSpaces.Rd |only rmake-1.2.0/rmake/man/subdirRule.Rd |only rmake-1.2.0/rmake/man/visualizeRules.Rd |only rmake-1.2.0/rmake/tests/testthat/realRunTools.R | 10 - rmake-1.2.0/rmake/tests/testthat/sanitizeCovr.R | 5 rmake-1.2.0/rmake/tests/testthat/test-expandTemplate.R | 36 ++++ rmake-1.2.0/rmake/tests/testthat/test-makefile.R | 8 rmake-1.2.0/rmake/tests/testthat/test-markdownRule.R | 47 +++-- rmake-1.2.0/rmake/tests/testthat/test-replaceVariables.R | 1 rmake-1.2.0/rmake/tests/testthat/test-run-simple.R | 39 ++++ rmake-1.2.0/rmake/tests/testthat/test-run-subdir.R |only rmake-1.2.0/rmake/tests/testthat/test-visualize.R |only rmake-1.2.0/rmake/vignettes |only 48 files changed, 443 insertions(+), 147 deletions(-)
Title: Call Rust Code from R using the 'extendr' Crate
Description: Provides functions to compile and load Rust code from R, similar
to how 'Rcpp' or 'cpp11' allow easy interfacing with C++ code. Also provides
helper functions to create R packages that use Rust code. Under the hood,
the Rust crate 'extendr' is used to do all the heavy lifting.
Author: Claus O. Wilke [aut] ,
Andy Thomason [aut],
Mossa M. Reimert [aut],
Ilia Kosenkov [aut, cre] ,
Malcolm Barrett [aut] ,
Josiah Parry [ctb] ,
Kenneth Vernon [ctb] ,
Alberson Miranda [ctb]
Maintainer: Ilia Kosenkov <ilia.kosenkov@outlook.com>
Diff between rextendr versions 0.4.1 dated 2025-06-19 and 0.4.2 dated 2025-08-26
DESCRIPTION | 9 ++--- MD5 | 50 +++++++++++++++++-------------- NAMESPACE | 3 + NEWS.md | 11 ++++++ R/badge.R |only R/cran-compliance.R | 6 +++ R/rust_sitrep.R | 12 +------ R/setup.R | 18 ++++++++--- R/use_extendr.R | 23 +++++++++++++- R/use_vscode.R |only R/utils.R | 16 +++++++++ R/zzz.R | 24 +++++++++++++- inst/doc/setting_up_rust.html | 4 +- inst/templates/Makevars.in | 2 - inst/templates/config.R | 12 ++++++- inst/templates/settings.json |only man/rextendr.Rd | 2 - man/use_extendr_badge.Rd |only man/use_vscode.Rd |only tests/testthat/_snaps/cran-compliance.md | 21 ++++++------- tests/testthat/_snaps/license_note.md | 7 ---- tests/testthat/_snaps/rust-sitrep.md | 15 --------- tests/testthat/_snaps/use_extendr.md | 14 +++++++- tests/testthat/setup.R | 12 ++++++- tests/testthat/test-rust-sitrep.R | 27 ---------------- tests/testthat/test-use_extendr.R | 26 +++++++++++++--- tests/testthat/test-use_msrv.R | 6 +-- tests/testthat/test-use_vscode.R |only tests/testthat/test-utils.R | 28 +++++++++++++++++ 29 files changed, 229 insertions(+), 119 deletions(-)
Title: Tools for Analysing and Visualising Viva Insights Data
Description: Opinionated functions that enable easier and faster
analysis of Viva Insights data. There are three main types of functions in 'wpa':
(i) Standard functions create a 'ggplot' visual or a summary table based on a specific
Viva Insights metric; (2) Report Generation functions generate HTML reports on
a specific analysis area, e.g. Collaboration; (3) Other miscellaneous functions cover
more specific applications (e.g. Subject Line text mining) of Viva Insights data.
This package adheres to 'tidyverse' principles and works well with the pipe syntax.
'wpa' is built with the beginner-to-intermediate R users in mind, and is optimised for
simplicity.
Author: Martin Chan [aut, cre],
Carlos Morales [aut],
Mark Powers [ctb],
Ainize Cidoncha [ctb],
Rosamary Ochoa Vargas [ctb],
Tannaz Sattari [ctb],
Lucas Hogner [ctb],
Jasminder Thind [ctb],
Simone Liebal [ctb],
Aleksey Ashikhmin [ctb],
Ellen Trinklein [ctb], [...truncated...]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between wpa versions 1.9.2 dated 2025-05-28 and 1.10.0 dated 2025-08-26
DESCRIPTION | 6 MD5 | 54 +++++--- NEWS.md | 8 + R/calculate_IV.R | 103 +++++++++++----- R/create_IV.R | 10 - R/create_bubble.R | 4 R/create_dt.R | 100 ++++++++++++++-- R/create_line.R | 3 R/create_scatter.R | 8 - R/globals.R | 3 R/hrvar_count_all.R | 6 R/identify_outlier.R | 2 R/meeting_skim.R | 4 R/meetingtype_dist_ca.R | 6 R/meetingtype_summary.R | 2 R/period_change.R | 4 R/tm_wordcloud.R | 6 man/create_IV.Rd | 6 man/create_dt.Rd | 25 +++- man/hrvar_count_all.Rd | 13 +- man/map_IV.Rd | 4 man/theme_wpa.Rd | 3 man/tm_wordcloud.Rd | 6 tests/testthat/test-create_IV.R | 213 +++++++++++++++++++++++++++-------- tests/testthat/test-create_bar.R |only tests/testthat/test-create_boxplot.R |only tests/testthat/test-create_dist.R |only tests/testthat/test-create_dt.R |only tests/testthat/test-create_fizz.R |only tests/testthat/test-create_line.R |only tests/testthat/test-create_rank.R |only tests/testthat/test-create_scatter.R |only 32 files changed, 435 insertions(+), 164 deletions(-)
Title: Analysis and Visualization of Multi-Omics Data
Description: A tool for comprehensive transcriptomic data analysis, with a focus on transcript-level data preprocessing, expression profiling, differential expression analysis, and functional enrichment. It enables researchers to identify key biological processes, disease biomarkers, and gene regulatory mechanisms. 'TransProR' is aimed at researchers and bioinformaticians working with RNA-Seq data, providing an intuitive framework for in-depth analysis and visualization of transcriptomic datasets. The package includes comprehensive documentation and usage examples to guide users through the entire analysis pipeline. The differential expression analysis methods incorporated in the package include 'limma' (Ritchie et al., 2015, <doi:10.1093/nar/gkv007>; Smyth, 2005, <doi:10.1007/0-387-29362-0_23>), 'edgeR' (Robinson et al., 2010, <doi:10.1093/bioinformatics/btp616>), 'DESeq2' (Love et al., 2014, <doi:10.1186/s13059-014-0550-8>), and Wilcoxon tests (Li et al., 2022, <doi:10. [...truncated...]
Author: Dongyue Yu [aut, cre, cph]
Maintainer: Dongyue Yu <yudongyue@mail.nankai.edu.cn>
Diff between TransProR versions 1.0.5 dated 2025-06-16 and 1.0.6 dated 2025-08-26
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 - R/FacetDensityFoldchange.R | 3 +-- R/MergeDensityFoldchange.R | 3 +-- inst/doc/TransProR.html | 4 ++-- 6 files changed, 14 insertions(+), 17 deletions(-)
Title: 'SciViews::R' - Unit, Integration and System Testing
Description: A complete unit test system.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svUnit versions 1.0.6 dated 2021-04-19 and 1.0.8 dated 2025-08-26
DESCRIPTION | 33 MD5 | 27 NEWS.md | 10 R/svUnit-package.R | 8 build/vignette.rds |binary inst/CITATION | 35 inst/doc/svUnit.R | 23 inst/doc/svUnit.Rmd | 19 inst/doc/svUnit.html | 2209 ++++++++++++++++++++++++++++++-------------------- man/check.Rd | 4 man/figures |only man/svSuite.Rd | 2 man/svUnit-package.Rd | 10 tests/spelling.R | 4 vignettes/svUnit.Rmd | 19 15 files changed, 1465 insertions(+), 938 deletions(-)
Title: Bayesian Methods for State Space Models
Description: Implements methods for Bayesian analysis of State Space Models.
Includes implementations of the Particle Marginal Metropolis-Hastings
algorithm described in Andrieu et al. (2010)
<doi:10.1111/j.1467-9868.2009.00736.x> and automatic tuning inspired by
Pitt et al. (2012) <doi:10.1016/j.jeconom.2012.06.004> and J. Dahlin and
T. B. Schön (2019) <doi:10.18637/jss.v088.c02>.
Author: Bjarke Hautop [aut, cre, cph]
Maintainer: Bjarke Hautop <bjarke.hautop@gmail.com>
Diff between bayesSSM versions 0.6.1 dated 2025-06-23 and 0.7.0 dated 2025-08-26
bayesSSM-0.6.1/bayesSSM/tests/testthat/test-particle_filter.R |only bayesSSM-0.7.0/bayesSSM/DESCRIPTION | 8 bayesSSM-0.7.0/bayesSSM/MD5 | 69 + bayesSSM-0.7.0/bayesSSM/NAMESPACE | 12 bayesSSM-0.7.0/bayesSSM/NEWS.md | 75 - bayesSSM-0.7.0/bayesSSM/R/auxiliary_filter.R |only bayesSSM-0.7.0/bayesSSM/R/bayesSSM-package.R |only bayesSSM-0.7.0/bayesSSM/R/bootstrap_filter.R |only bayesSSM-0.7.0/bayesSSM/R/ess.R | 5 bayesSSM-0.7.0/bayesSSM/R/particle_filter-doc.R |only bayesSSM-0.7.0/bayesSSM/R/particle_filter.R | 435 ---------- bayesSSM-0.7.0/bayesSSM/R/particle_filter_core.R |only bayesSSM-0.7.0/bayesSSM/R/pmmh.R | 228 ++--- bayesSSM-0.7.0/bayesSSM/R/pmmh_tuning.R | 203 ++-- bayesSSM-0.7.0/bayesSSM/R/resample_move_filter.R |only bayesSSM-0.7.0/bayesSSM/R/rhat.R | 2 bayesSSM-0.7.0/bayesSSM/R/summary.R | 2 bayesSSM-0.7.0/bayesSSM/R/utils.R | 34 bayesSSM-0.7.0/bayesSSM/README.md | 33 bayesSSM-0.7.0/bayesSSM/build/partial.rdb |only bayesSSM-0.7.0/bayesSSM/inst/doc/bayesSSM.R | 1 bayesSSM-0.7.0/bayesSSM/inst/doc/bayesSSM.Rmd | 2 bayesSSM-0.7.0/bayesSSM/inst/doc/bayesSSM.html | 120 +- bayesSSM-0.7.0/bayesSSM/man/auxiliary_filter.Rd |only bayesSSM-0.7.0/bayesSSM/man/bayesSSM-package.Rd |only bayesSSM-0.7.0/bayesSSM/man/bootstrap_filter.Rd |only bayesSSM-0.7.0/bayesSSM/man/default_tune_control.Rd | 8 bayesSSM-0.7.0/bayesSSM/man/dot-ensure_dots.Rd |only bayesSSM-0.7.0/bayesSSM/man/dot-particle_filter_core.Rd |only bayesSSM-0.7.0/bayesSSM/man/dot-pilot_run.Rd |only bayesSSM-0.7.0/bayesSSM/man/dot-run_pilot_chain.Rd |only bayesSSM-0.7.0/bayesSSM/man/particle_filter.Rd | 227 ----- bayesSSM-0.7.0/bayesSSM/man/particle_filter_common_params.Rd |only bayesSSM-0.7.0/bayesSSM/man/particle_filter_model_specification.Rd |only bayesSSM-0.7.0/bayesSSM/man/particle_filter_returns.Rd |only bayesSSM-0.7.0/bayesSSM/man/pmmh.Rd | 105 +- bayesSSM-0.7.0/bayesSSM/man/resample_move_filter.Rd |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-auxiliary_filter.R |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-bootstrap_filter.R |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-particle_filter_core.R |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-pmmh.R | 157 +++ bayesSSM-0.7.0/bayesSSM/tests/testthat/test-pmmh_tuning.R | 434 ++++++++- bayesSSM-0.7.0/bayesSSM/tests/testthat/test-resample_move_filter.R |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-resampling.R | 36 bayesSSM-0.7.0/bayesSSM/tests/testthat/test-rhat.R | 12 bayesSSM-0.7.0/bayesSSM/tests/testthat/test-utils.R | 2 bayesSSM-0.7.0/bayesSSM/vignettes/bayesSSM.Rmd | 2 47 files changed, 1030 insertions(+), 1182 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-22 0.2.4
2021-06-17 0.2.3
2020-04-15 0.2.2
2020-02-18 0.2.1
2019-12-07 0.2.0
2019-09-30 0.1.0
Title: Create Data Frames for Exchange and Reuse
Description: The 'dataset' package helps create semantically rich,
machine-readable, and interoperable datasets in R. It extends tidy
data frames with metadata that preserves meaning, improves
interoperability, and makes datasets easier to publish, exchange,
and reuse in line with ISO and W3C standards.
Author: Daniel Antal [aut, cre] ,
Marcelo Perlin [rev] ,
Anna Marta Mester [rev] ,
Mauro Lepore [rev]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between dataset versions 0.3.9 dated 2025-05-25 and 0.4.0 dated 2025-08-26
dataset-0.3.9/dataset/R/dataset-iris_dataset.R |only dataset-0.3.9/dataset/data/iris_dataset.rda |only dataset-0.3.9/dataset/inst/doc/Motivation.R |only dataset-0.3.9/dataset/inst/doc/Motivation.Rmd |only dataset-0.3.9/dataset/inst/doc/Motivation.html |only dataset-0.3.9/dataset/inst/doc/new_requirements.R |only dataset-0.3.9/dataset/inst/doc/new_requirements.Rmd |only dataset-0.3.9/dataset/inst/doc/new_requirements.html |only dataset-0.3.9/dataset/man/iris_dataset.Rd |only dataset-0.3.9/dataset/vignettes/Motivation.Rmd |only dataset-0.3.9/dataset/vignettes/new_requirements.Rmd |only dataset-0.4.0/dataset/DESCRIPTION | 32 dataset-0.4.0/dataset/MD5 | 294 ++--- dataset-0.4.0/dataset/NAMESPACE | 19 dataset-0.4.0/dataset/NEWS.md | 48 dataset-0.4.0/dataset/R/as_character.R |only dataset-0.4.0/dataset/R/as_datacite.R | 171 ++- dataset-0.4.0/dataset/R/as_dublincore.R | 153 +- dataset-0.4.0/dataset/R/as_factor.R |only dataset-0.4.0/dataset/R/as_numeric.R |only dataset-0.4.0/dataset/R/bibrecord.R | 62 - dataset-0.4.0/dataset/R/contributor.R |only dataset-0.4.0/dataset/R/creator.R | 23 dataset-0.4.0/dataset/R/data-gdp.R |only dataset-0.4.0/dataset/R/datacite.R | 326 ++--- dataset-0.4.0/dataset/R/datacite_to_triples.R |only dataset-0.4.0/dataset/R/dataset-orange_df.R | 109 + dataset-0.4.0/dataset/R/dataset_df.R | 252 ++-- dataset-0.4.0/dataset/R/dataset_format.R |only dataset-0.4.0/dataset/R/dataset_title.R | 44 dataset-0.4.0/dataset/R/dataset_to_triples.R | 194 ++- dataset-0.4.0/dataset/R/defined.R | 381 +----- dataset-0.4.0/dataset/R/describe.R | 77 - dataset-0.4.0/dataset/R/description.R | 53 dataset-0.4.0/dataset/R/dublincore.R | 450 ++------ dataset-0.4.0/dataset/R/dublincore_to_triples.R |only dataset-0.4.0/dataset/R/fix_contributor.R | 95 - dataset-0.4.0/dataset/R/geolocation.R | 41 dataset-0.4.0/dataset/R/get_bibentry.R | 78 - dataset-0.4.0/dataset/R/id_to_column.R | 23 dataset-0.4.0/dataset/R/identifier.R | 83 - dataset-0.4.0/dataset/R/language.R | 237 +++- dataset-0.4.0/dataset/R/n_triple.R | 150 +- dataset-0.4.0/dataset/R/provenance.R | 76 - dataset-0.4.0/dataset/R/publication_year.R | 41 dataset-0.4.0/dataset/R/publisher.R | 53 dataset-0.4.0/dataset/R/relation.R |only dataset-0.4.0/dataset/R/rights.R | 48 dataset-0.4.0/dataset/R/subject.R | 177 +-- dataset-0.4.0/dataset/R/var_concept.R | 2 dataset-0.4.0/dataset/R/var_label.R | 184 ++- dataset-0.4.0/dataset/R/var_labels.R |only dataset-0.4.0/dataset/R/var_namespace.R | 72 - dataset-0.4.0/dataset/R/var_unit.R | 108 + dataset-0.4.0/dataset/R/xsd_convert.R | 293 ++--- dataset-0.4.0/dataset/README.md | 225 +--- dataset-0.4.0/dataset/build/partial.rdb |only dataset-0.4.0/dataset/build/vignette.rds |binary dataset-0.4.0/dataset/data/gdp.rda |only dataset-0.4.0/dataset/inst/WORDLIST | 110 + dataset-0.4.0/dataset/inst/doc/bibrecord.Rmd | 81 - dataset-0.4.0/dataset/inst/doc/bibrecord.html | 190 ++- dataset-0.4.0/dataset/inst/doc/dataset_df.R | 105 + dataset-0.4.0/dataset/inst/doc/dataset_df.Rmd | 221 ++- dataset-0.4.0/dataset/inst/doc/dataset_df.html | 452 +++++--- dataset-0.4.0/dataset/inst/doc/defined.R | 75 - dataset-0.4.0/dataset/inst/doc/defined.Rmd | 197 ++- dataset-0.4.0/dataset/inst/doc/defined.html | 431 ++++--- dataset-0.4.0/dataset/inst/doc/design.R |only dataset-0.4.0/dataset/inst/doc/design.Rmd |only dataset-0.4.0/dataset/inst/doc/design.html |only dataset-0.4.0/dataset/inst/doc/example-dataset.Rmd |only dataset-0.4.0/dataset/inst/doc/example-dataset.html |only dataset-0.4.0/dataset/inst/doc/introduction.R |only dataset-0.4.0/dataset/inst/doc/introduction.Rmd |only dataset-0.4.0/dataset/inst/doc/introduction.html |only dataset-0.4.0/dataset/inst/doc/rdf.R | 169 ++- dataset-0.4.0/dataset/inst/doc/rdf.Rmd | 272 +++- dataset-0.4.0/dataset/inst/doc/rdf.html | 560 +++++----- dataset-0.4.0/dataset/man/as_character.Rd | 126 +- dataset-0.4.0/dataset/man/as_factor.Rd | 57 - dataset-0.4.0/dataset/man/as_numeric.Rd | 123 +- dataset-0.4.0/dataset/man/bibrecord.Rd | 122 +- dataset-0.4.0/dataset/man/bind_defined_rows.Rd | 152 +- dataset-0.4.0/dataset/man/c.haven_labelled_defined.Rd | 65 - dataset-0.4.0/dataset/man/clean_person_name.Rd |only dataset-0.4.0/dataset/man/contributor.Rd |only dataset-0.4.0/dataset/man/creator.Rd | 113 +- dataset-0.4.0/dataset/man/datacite.Rd | 386 +++--- dataset-0.4.0/dataset/man/dataset_df.Rd | 256 ++-- dataset-0.4.0/dataset/man/dataset_format.Rd |only dataset-0.4.0/dataset/man/dataset_title.Rd | 103 + dataset-0.4.0/dataset/man/dataset_to_triples.Rd | 84 + dataset-0.4.0/dataset/man/default_provenance.Rd |only dataset-0.4.0/dataset/man/defined.Rd | 193 +-- dataset-0.4.0/dataset/man/describe.Rd | 72 - dataset-0.4.0/dataset/man/description.Rd | 110 - dataset-0.4.0/dataset/man/dublincore.Rd | 367 ++---- dataset-0.4.0/dataset/man/expand_triples.Rd |only dataset-0.4.0/dataset/man/fix_contributor.Rd | 58 - dataset-0.4.0/dataset/man/gdp.Rd |only dataset-0.4.0/dataset/man/geolocation.Rd | 114 +- dataset-0.4.0/dataset/man/get_bibentry.Rd | 140 +- dataset-0.4.0/dataset/man/get_variable_concepts.Rd | 42 dataset-0.4.0/dataset/man/id_to_column.Rd | 61 - dataset-0.4.0/dataset/man/identifier.Rd | 129 +- dataset-0.4.0/dataset/man/language.Rd | 166 +- dataset-0.4.0/dataset/man/map_role_to_schema.Rd |only dataset-0.4.0/dataset/man/n_triple.Rd | 72 - dataset-0.4.0/dataset/man/n_triples.Rd | 76 - dataset-0.4.0/dataset/man/orange_df.Rd | 147 +- dataset-0.4.0/dataset/man/provenance.Rd | 81 - dataset-0.4.0/dataset/man/publication_year.Rd | 104 - dataset-0.4.0/dataset/man/publisher.Rd | 113 +- dataset-0.4.0/dataset/man/relation.Rd |only dataset-0.4.0/dataset/man/rights.Rd | 108 + dataset-0.4.0/dataset/man/strip_defined.Rd | 61 - dataset-0.4.0/dataset/man/subject.Rd | 200 ++- dataset-0.4.0/dataset/man/triples_column_generate.Rd |only dataset-0.4.0/dataset/man/triples_to_ntriples.Rd |only dataset-0.4.0/dataset/man/var_concept.Rd | 102 - dataset-0.4.0/dataset/man/var_label.Rd | 201 ++- dataset-0.4.0/dataset/man/var_labels.Rd |only dataset-0.4.0/dataset/man/var_namespace.Rd | 155 +- dataset-0.4.0/dataset/man/var_unit.Rd | 187 +-- dataset-0.4.0/dataset/man/vec_cast.double.haven_labelled_defined.Rd |only dataset-0.4.0/dataset/man/vec_cast_named.Rd | 24 dataset-0.4.0/dataset/man/xsd_convert.Rd | 186 +-- dataset-0.4.0/dataset/tests/spelling.R | 9 dataset-0.4.0/dataset/tests/testthat/test-as_character.R |only dataset-0.4.0/dataset/tests/testthat/test-as_datacite.R | 112 +- dataset-0.4.0/dataset/tests/testthat/test-as_dublincore.R | 100 + dataset-0.4.0/dataset/tests/testthat/test-as_factor.R |only dataset-0.4.0/dataset/tests/testthat/test-as_numeric.R |only dataset-0.4.0/dataset/tests/testthat/test-bibrecord.R | 1 dataset-0.4.0/dataset/tests/testthat/test-bind_defined_rows.R | 18 dataset-0.4.0/dataset/tests/testthat/test-contributor.R |only dataset-0.4.0/dataset/tests/testthat/test-creator.R | 72 - dataset-0.4.0/dataset/tests/testthat/test-datacite.R | 278 ++-- dataset-0.4.0/dataset/tests/testthat/test-datacite_to_triples.R |only dataset-0.4.0/dataset/tests/testthat/test-dataset_df.R | 314 ++--- dataset-0.4.0/dataset/tests/testthat/test-dataset_format.R |only dataset-0.4.0/dataset/tests/testthat/test-dataset_title.R | 59 - dataset-0.4.0/dataset/tests/testthat/test-dataset_to_triples.R | 143 ++ dataset-0.4.0/dataset/tests/testthat/test-defined.R | 508 ++------- dataset-0.4.0/dataset/tests/testthat/test-describe.R | 35 dataset-0.4.0/dataset/tests/testthat/test-description.R | 47 dataset-0.4.0/dataset/tests/testthat/test-dublincore.R | 308 ++--- dataset-0.4.0/dataset/tests/testthat/test-dublincore_to_triples.R |only dataset-0.4.0/dataset/tests/testthat/test-fix_contributor.R | 35 dataset-0.4.0/dataset/tests/testthat/test-fix_publisher.R | 6 dataset-0.4.0/dataset/tests/testthat/test-geolocation.R | 54 dataset-0.4.0/dataset/tests/testthat/test-get_bibentry.R | 119 +- dataset-0.4.0/dataset/tests/testthat/test-id_to_column.R | 126 +- dataset-0.4.0/dataset/tests/testthat/test-identifier.R | 106 + dataset-0.4.0/dataset/tests/testthat/test-language.R | 62 - dataset-0.4.0/dataset/tests/testthat/test-n_triple.R | 275 +++- dataset-0.4.0/dataset/tests/testthat/test-provenance.R | 38 dataset-0.4.0/dataset/tests/testthat/test-publication_year.R | 55 dataset-0.4.0/dataset/tests/testthat/test-publisher.R | 59 - dataset-0.4.0/dataset/tests/testthat/test-relation.R |only dataset-0.4.0/dataset/tests/testthat/test-rights.R | 65 - dataset-0.4.0/dataset/tests/testthat/test-subject.R | 212 +++ dataset-0.4.0/dataset/tests/testthat/test-var_label.R | 115 +- dataset-0.4.0/dataset/tests/testthat/test-var_labels.R |only dataset-0.4.0/dataset/tests/testthat/test-var_namespace.R | 76 + dataset-0.4.0/dataset/tests/testthat/test-var_unit.R | 83 + dataset-0.4.0/dataset/tests/testthat/test-xsd_convert.R | 186 ++- dataset-0.4.0/dataset/vignettes/bibrecord.Rmd | 81 - dataset-0.4.0/dataset/vignettes/dataset_df.Rmd | 221 ++- dataset-0.4.0/dataset/vignettes/defined.Rmd | 197 ++- dataset-0.4.0/dataset/vignettes/design.Rmd |only dataset-0.4.0/dataset/vignettes/example-dataset.Rmd |only dataset-0.4.0/dataset/vignettes/images |only dataset-0.4.0/dataset/vignettes/introduction.Rmd |only dataset-0.4.0/dataset/vignettes/rdf.Rmd | 272 +++- 176 files changed, 9881 insertions(+), 6959 deletions(-)
Title: Fitting Univariate Censored Linear Regression Model with
Autoregressive Errors
Description: It fits a univariate left, right, or interval censored linear regression model
with autoregressive errors, considering the normal or the Student-t distribution for the
innovations. It provides estimates and standard errors of the parameters, predicts
future observations, and supports missing values on the dependent variable.
References used for this package:
Schumacher, F. L., Lachos, V. H., & Dey, D. K. (2017). Censored regression models with
autoregressive errors: A likelihood-based perspective. Canadian Journal of Statistics,
45(4), 375-392 <doi:10.1002/cjs.11338>.
Schumacher, F. L., Lachos, V. H., Vilca-Labra, F. E., & Castro, L. M. (2018). Influence
diagnostics for censored regression models with autoregressive errors. Australian & New
Zealand Journal of Statistics, 60(2), 209-229 <doi:10.1111/anzs.12229>.
Valeriano, K. A., Schumacher, F. L., Galarza, C. E., & Matos, L. A. (2024). Censored
autoregressive regression models with Student‐t innovations. Can [...truncated...]
Author: Fernanda L. Schumacher [aut, cre] ,
Katherine A. L. Valeriano [ctb] ,
Victor H. Lachos [ctb] ,
Christian G. Morales [ctb] ,
Larissa A. Matos [ctb]
Maintainer: Fernanda L. Schumacher <fernandalschumacher@gmail.com>
Diff between ARCensReg versions 3.0.1 dated 2023-08-29 and 3.0.2 dated 2025-08-26
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/partial.rdb |binary man/plot.InfDiag.Rd | 2 +- man/plot.Rd | 2 +- man/plot.residARpCRM.Rd | 2 +- 7 files changed, 27 insertions(+), 22 deletions(-)
Title: Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Author: Samuel Marsh [aut, cre] ,
Ming Tang [ctb],
Velina Kozareva [ctb],
Lucas Graybuck [ctb],
Zoe Clarke [ctb]
Maintainer: Samuel Marsh <sccustomize@gmail.com>
Diff between scCustomize versions 3.0.1 dated 2024-12-18 and 3.1.3 dated 2025-08-26
scCustomize-3.0.1/scCustomize/R/Plotting_Utilities.R |only scCustomize-3.1.3/scCustomize/DESCRIPTION | 21 scCustomize-3.1.3/scCustomize/MD5 | 147 - scCustomize-3.1.3/scCustomize/NAMESPACE | 29 scCustomize-3.1.3/scCustomize/NEWS.md | 64 scCustomize-3.1.3/scCustomize/R/Color_Palettes.R | 15 scCustomize-3.1.3/scCustomize/R/Data.R | 98 scCustomize-3.1.3/scCustomize/R/Deprecated.R | 164 - scCustomize-3.1.3/scCustomize/R/Generics.R | 76 scCustomize-3.1.3/scCustomize/R/Internal_Utilities.R | 1285 ++++++++-- scCustomize-3.1.3/scCustomize/R/LIGER_Internal_Utilities.R | 620 ++-- scCustomize-3.1.3/scCustomize/R/LIGER_Plotting.R | 85 scCustomize-3.1.3/scCustomize/R/LIGER_Utilities.R | 217 + scCustomize-3.1.3/scCustomize/R/Object_Conversion.R | 59 scCustomize-3.1.3/scCustomize/R/Object_Utilities.R | 6 scCustomize-3.1.3/scCustomize/R/Plotting_Nebulosa.R | 4 scCustomize-3.1.3/scCustomize/R/Plotting_QC_Seq_10X.R | 10 scCustomize-3.1.3/scCustomize/R/Plotting_QC_Seurat.R | 71 scCustomize-3.1.3/scCustomize/R/Plotting_Seurat.R | 131 - scCustomize-3.1.3/scCustomize/R/Plotting_Seurat_Iterative.R | 13 scCustomize-3.1.3/scCustomize/R/Plotting_Statistics.R | 406 ++- scCustomize-3.1.3/scCustomize/R/Plotting_Ultilities_Themes.R |only scCustomize-3.1.3/scCustomize/R/Plotting_Utilities_Internal.R |only scCustomize-3.1.3/scCustomize/R/QC_Utilities_Seurat.R | 536 ++++ scCustomize-3.1.3/scCustomize/R/Read_&_Write_Data.R | 124 scCustomize-3.1.3/scCustomize/R/Statistics.R | 175 - scCustomize-3.1.3/scCustomize/R/Utilities.R | 175 + scCustomize-3.1.3/scCustomize/R/sysdata.rda |binary scCustomize-3.1.3/scCustomize/R/zzz.R | 5 scCustomize-3.1.3/scCustomize/build/partial.rdb |binary scCustomize-3.1.3/scCustomize/data/ensembl_exAM_list.rda |only scCustomize-3.1.3/scCustomize/data/ensembl_lncRNA_id.rda |only scCustomize-3.1.3/scCustomize/data/ensembl_malat1_list.rda |only scCustomize-3.1.3/scCustomize/data/ensembl_ribo_id.rda |binary scCustomize-3.1.3/scCustomize/data/exAM_gene_list.rda |only scCustomize-3.1.3/scCustomize/data/lncRNA_gene_list.rda |only scCustomize-3.1.3/scCustomize/data/msigdb_qc_ensembl_list.rda |binary scCustomize-3.1.3/scCustomize/data/msigdb_qc_gene_list.rda |binary scCustomize-3.1.3/scCustomize/man/Add_Cell_QC_Metrics.Rd | 15 scCustomize-3.1.3/scCustomize/man/Add_MALAT1_Threshold.Rd |only scCustomize-3.1.3/scCustomize/man/Blank_Theme.Rd | 2 scCustomize-3.1.3/scCustomize/man/Cluster_Stats_All_Samples.Rd | 18 scCustomize-3.1.3/scCustomize/man/Clustered_DotPlot.Rd | 8 scCustomize-3.1.3/scCustomize/man/Create_CellBender_Merged_Seurat.Rd | 14 scCustomize-3.1.3/scCustomize/man/Dataset_Size_LIGER.Rd |only scCustomize-3.1.3/scCustomize/man/DimPlot_LIGER.Rd | 17 scCustomize-3.1.3/scCustomize/man/Extract_Sample_Meta.Rd | 2 scCustomize-3.1.3/scCustomize/man/Extract_Top_Markers.Rd | 20 scCustomize-3.1.3/scCustomize/man/Factor_Cor_Plot.Rd | 3 scCustomize-3.1.3/scCustomize/man/FeaturePlot_scCustom.Rd | 7 scCustomize-3.1.3/scCustomize/man/Get_Reference_LIGER.Rd |only scCustomize-3.1.3/scCustomize/man/Iterate_Cluster_Highlight_Plot.Rd | 2 scCustomize-3.1.3/scCustomize/man/Iterate_Meta_Highlight_Plot.Rd | 2 scCustomize-3.1.3/scCustomize/man/MAD_Stats.Rd | 9 scCustomize-3.1.3/scCustomize/man/Median_Stats.Rd | 9 scCustomize-3.1.3/scCustomize/man/Move_Legend.Rd | 2 scCustomize-3.1.3/scCustomize/man/PC_Plotting.Rd | 2 scCustomize-3.1.3/scCustomize/man/Percent_Expressing.Rd | 16 scCustomize-3.1.3/scCustomize/man/Plot_Cells_per_Sample.Rd | 11 scCustomize-3.1.3/scCustomize/man/Plot_Median_Genes.Rd | 13 scCustomize-3.1.3/scCustomize/man/Plot_Median_Mito.Rd | 13 scCustomize-3.1.3/scCustomize/man/Plot_Median_Other.Rd | 13 scCustomize-3.1.3/scCustomize/man/Plot_Median_UMIs.Rd | 13 scCustomize-3.1.3/scCustomize/man/Proportion_Plot.Rd | 9 scCustomize-3.1.3/scCustomize/man/Proportion_Plot_per_Sample.Rd |only scCustomize-3.1.3/scCustomize/man/QC_Plot_GenevsFeature.Rd | 3 scCustomize-3.1.3/scCustomize/man/QC_Plot_UMIvsFeature.Rd | 3 scCustomize-3.1.3/scCustomize/man/QC_Plot_UMIvsGene.Rd | 3 scCustomize-3.1.3/scCustomize/man/QC_Plots_Genes.Rd | 3 scCustomize-3.1.3/scCustomize/man/QC_Plots_UMIs.Rd | 3 scCustomize-3.1.3/scCustomize/man/Read_Add_cNMF.Rd |only scCustomize-3.1.3/scCustomize/man/Read_Metrics_10X.Rd | 2 scCustomize-3.1.3/scCustomize/man/Top_Genes_Factor.Rd | 32 scCustomize-3.1.3/scCustomize/man/UnRotate_X.Rd | 2 scCustomize-3.1.3/scCustomize/man/deprecated.Rd | 38 scCustomize-3.1.3/scCustomize/man/ensembl_exAM_list.Rd |only scCustomize-3.1.3/scCustomize/man/ensembl_lncRNA_id.Rd |only scCustomize-3.1.3/scCustomize/man/ensembl_malat1_list.Rd |only scCustomize-3.1.3/scCustomize/man/ensembl_mito_id.Rd | 2 scCustomize-3.1.3/scCustomize/man/exAM_Scoring.Rd |only scCustomize-3.1.3/scCustomize/man/exAM_gene_list.Rd |only scCustomize-3.1.3/scCustomize/man/lncRNA_gene_list.Rd |only scCustomize-3.1.3/scCustomize/man/scCustomize-package.Rd | 3 scCustomize-3.1.3/scCustomize/man/theme_ggprism_mod.Rd | 2 84 files changed, 3725 insertions(+), 1127 deletions(-)
Title: Standardization-Based Effect Estimation with Optional Prior
Covariance Adjustment
Description: The Prognostic Regression Offsets with Propagation of
ERrors (for Treatment Effect Estimation) package facilitates
direct adjustment for experiments and observational studies that
is compatible with a range of study designs and covariance
adjustment strategies. It uses explicit specification of clusters,
blocks and treatment allocations to furnish probability of
assignment-based weights targeting any of several average
treatment effect parameters, and for standard error calculations
reflecting these design parameters. For covariance adjustment of
its Hajek and (one-way) fixed effects estimates, it enables
offsetting the outcome against predictions from a dedicated
covariance model, with standard error calculations propagating
error as appropriate from the covariance model.
Author: Josh Errickson [cre, aut],
Josh Wasserman [aut],
Mark Fredrickson [ctb],
Adam Sales [ctb],
Xinhe Wang [ctb],
Ben Hansen [aut]
Maintainer: Josh Errickson <jerrick@umich.edu>
Diff between propertee versions 1.0.0 dated 2025-08-21 and 1.0.1 dated 2025-08-26
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 3 R/SandwichLayerVariance.R | 94 +++++++++++++----- R/as.lmitt.R | 1 R/teeMod.R | 56 ++++++----- inst/doc/RDD.html | 4 inst/doc/intro-to-propertee.html | 4 inst/doc/non-binary-treatment.html | 4 man/cluster_iss.Rd | 9 - man/dot-compute_IK_dof.Rd | 3 tests/testthat/test.SandwichLayerVariance.R | 142 +++++++++++++++++++++++++--- 12 files changed, 263 insertions(+), 85 deletions(-)
Title: Compute Maps and Properties of Polar Zonoids
Description: In each odd dimension is a convex body - the polar zonoid - whose generating functions are trigonometric polynomials. The polar zonoid is a straightforward generalization of the polar zonohedron in dimension 3, as defined by Chilton and Coxeter (1963) <doi:10.2307/2313051>. The package has some applications of the polar zonoid, including the properties of configuration spaces of arcs on the circle and 3x3 rotation matrices. There is also a root solver for trigonometric polynomials.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between polarzonoid versions 0.1-2 dated 2025-06-13 and 0.2-0 dated 2025-08-26
DESCRIPTION | 13 MD5 | 41 NEWS.md | 7 README.md |only build/vignette.rds |binary inst/doc/implicitization.Rmd | 2 inst/doc/implicitization.html | 42 inst/doc/paths.R | 69 inst/doc/paths.Rmd | 136 - inst/doc/paths.html | 3023 +++++++++++++++++++++++++++++- inst/doc/polarzonoid-guide.Rmd | 6 inst/doc/polarzonoid-guide.html | 59 inst/doc/rotations.R | 65 inst/doc/rotations.Rmd | 127 - inst/doc/rotations.html | 3948 +++++++++++++++++++++++++++++++++++++++- inst/doc/unknot.Rmd | 2 inst/doc/unknot.pdf |binary vignettes/implicitization.Rmd | 2 vignettes/paths.Rmd | 136 - vignettes/polarzonoid-guide.Rmd | 6 vignettes/rotations.Rmd | 127 - vignettes/unknot.Rmd | 2 22 files changed, 7353 insertions(+), 460 deletions(-)
Title: Transform Models into 'LaTeX' Equations
Description: The goal of 'equatiomatic' is to reduce the pain
associated with writing 'LaTeX' formulas from fitted models. The
primary function of the package, extract_eq(), takes a fitted model
object as its input and returns the corresponding 'LaTeX' code for the
model.
Author: Daniel Anderson [aut] ,
Andrew Heiss [aut] ,
Jay Sumners [aut],
Joshua Rosenberg [ctb] ,
Jonathan Sidi [ctb] ,
Ellis Hughes [ctb] ,
Thomas Fung [ctb] ,
Reza Norouzian [ctb] ,
Indrajeet Patil [ctb] ,
Quinn White [ctb] ,
David Kane [ctb],
Philippe Gros [...truncated...]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between equatiomatic versions 0.3.7 dated 2025-07-04 and 0.4.4 dated 2025-08-26
DESCRIPTION | 13 - MD5 | 89 +++++++----- NAMESPACE | 8 + NEWS.md | 47 ++++++ R/equation.R |only R/extract_eq.R | 43 ++++++ R/print.R | 76 ++++++---- R/shiny.R | 2 README.md | 158 ++++++++++++---------- build/vignette.rds |binary inst/WORDLIST | 14 + inst/doc/colors.R | 151 ++++++++------------- inst/doc/colors.Rmd | 190 +++++++++++--------------- inst/doc/colors.html | 264 ++++++++++++++++--------------------- inst/doc/equatiomatic.R | 89 +++++------- inst/doc/equatiomatic.Rmd | 206 +++++++++++----------------- inst/doc/equatiomatic.html | 245 ++++++++++++++++++++-------------- inst/doc/forecast-arima.R | 24 --- inst/doc/forecast-arima.Rmd | 33 +--- inst/doc/forecast-arima.html | 25 +-- inst/doc/lme4-lmer.R | 79 +++-------- inst/doc/lme4-lmer.Rmd | 106 +++++--------- inst/doc/lme4-lmer.html | 176 ++++++++++-------------- inst/doc/markdown-quarto.R |only inst/doc/markdown-quarto.Rmd |only inst/doc/markdown-quarto.html |only inst/doc/plotting-integration.R | 47 +----- inst/doc/plotting-integration.Rmd | 76 ++++------ inst/doc/plotting-integration.html | 135 ++++++++---------- inst/doc/tests_and_coverage.R | 7 inst/doc/tests_and_coverage.Rmd | 7 inst/doc/tests_and_coverage.html | 2 inst/doc/tidymodels.R |only inst/doc/tidymodels.Rmd |only inst/doc/tidymodels.html |only inst/doc/usage-shiny.R | 6 inst/doc/usage-shiny.Rmd | 20 -- inst/doc/usage-shiny.html | 11 - man/equation.Rd |only man/figures/preview1.png |binary man/preview_eq.Rd |only man/renderEq.Rd | 2 vignettes/colors.Rmd | 190 +++++++++++--------------- vignettes/equatiomatic.Rmd | 206 +++++++++++----------------- vignettes/forecast-arima.Rmd | 33 +--- vignettes/lme4-lmer.Rmd | 106 +++++--------- vignettes/markdown-quarto.Rmd |only vignettes/plotting-integration.Rmd | 76 ++++------ vignettes/tests_and_coverage.Rmd | 7 vignettes/tidymodels.Rmd |only vignettes/usage-shiny.Rmd | 20 -- 51 files changed, 1374 insertions(+), 1615 deletions(-)
Title: Retrieve and Analyze Clinical Trials Data from Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' (<https://clinicaltrials.gov/> and also
translating queries the retired classic interface), the
'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Protocols, statistical analysis plans, informed consent sheets and other
documents in registers associated with trials can also be downloaded.
Other functions implement trial concepts canonically across registers,
identify deduplicated records, easily find and extract variables
(fields) of interest even from complex nested data as used by the
re [...truncated...]
Author: Ralf Herold [aut, cre] ,
Marek Kubica [cph] ,
Ivan Bozhanov [cph]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.24.1 dated 2025-07-25 and 1.25.0 dated 2025-08-26
ctrdata-1.24.1/ctrdata/inst/tinytest/more_test_ctrdata_mongo_local_euctr.R |only ctrdata-1.24.1/ctrdata/inst/tinytest/more_test_ctrdata_mongo_remote_ro.R |only ctrdata-1.24.1/ctrdata/inst/tinytest/test_ctrdata_postgres_ctgov2.R |only ctrdata-1.24.1/ctrdata/inst/tinytest/test_ctrdata_sqlite_ctgov2.R |only ctrdata-1.24.1/ctrdata/inst/tinytest/test_ctrdata_sqlite_euctr.R |only ctrdata-1.25.0/ctrdata/DESCRIPTION | 6 ctrdata-1.25.0/ctrdata/MD5 | 100 - ctrdata-1.25.0/ctrdata/NAMESPACE | 2 ctrdata-1.25.0/ctrdata/NEWS.md | 17 ctrdata-1.25.0/ctrdata/R/ctrGenerateQueries.R | 27 ctrdata-1.25.0/ctrdata/R/ctrLoadQueryIntoDbCtis.R | 293 ++--- ctrdata-1.25.0/ctrdata/R/ctrLoadQueryIntoDbEuctr.R | 182 ++- ctrdata-1.25.0/ctrdata/R/ctrRerunQuery.R | 199 +-- ctrdata-1.25.0/ctrdata/R/ctrdata-registers.R | 16 ctrdata-1.25.0/ctrdata/R/ctrdata-trial-concepts.R | 10 ctrdata-1.25.0/ctrdata/R/f_controlType.R | 1 ctrdata-1.25.0/ctrdata/R/f_hasResults.R | 24 ctrdata-1.25.0/ctrdata/R/f_numTestArmsSubstances.R | 5 ctrdata-1.25.0/ctrdata/R/f_sponsorType.R | 11 ctrdata-1.25.0/ctrdata/R/f_statusRecruitment.R | 32 ctrdata-1.25.0/ctrdata/R/util_functions.R | 233 ++-- ctrdata-1.25.0/ctrdata/R/zzz.R | 29 ctrdata-1.25.0/ctrdata/README.md | 93 - ctrdata-1.25.0/ctrdata/build/partial.rdb |binary ctrdata-1.25.0/ctrdata/build/vignette.rds |binary ctrdata-1.25.0/ctrdata/inst/WORDLIST | 3 ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_retrieve.R | 24 ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_retrieve.Rmd | 30 ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_retrieve.html | 31 ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_summarise.R | 251 ++-- ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_summarise.Rmd | 265 ++-- ctrdata-1.25.0/ctrdata/inst/doc/ctrdata_summarise.html | 557 ++++------ ctrdata-1.25.0/ctrdata/inst/tinytest/ctrdata_ctgov.R | 3 ctrdata-1.25.0/ctrdata/inst/tinytest/ctrdata_ctgov2.R | 31 ctrdata-1.25.0/ctrdata/inst/tinytest/ctrdata_ctis.R | 26 ctrdata-1.25.0/ctrdata/inst/tinytest/ctrdata_euctr.R | 3 ctrdata-1.25.0/ctrdata/inst/tinytest/ctrdata_isrctn.R | 3 ctrdata-1.25.0/ctrdata/inst/tinytest/more_test_ctrdata_postgres_ctgov2.R |only ctrdata-1.25.0/ctrdata/inst/tinytest/more_test_ctrdata_sqlite_ctgov2.R |only ctrdata-1.25.0/ctrdata/inst/tinytest/more_test_ctrdata_sqlite_euctr.R |only ctrdata-1.25.0/ctrdata/inst/tinytest/setup_ctrdata.R | 18 ctrdata-1.25.0/ctrdata/inst/tinytest/test_ctrdata_function_various.R | 4 ctrdata-1.25.0/ctrdata/inst/tinytest/test_ctrdata_mongo_local_euctr.R |only ctrdata-1.25.0/ctrdata/inst/tinytest/test_ctrdata_mongo_remote_ro.R |only ctrdata-1.25.0/ctrdata/man/ctrGenerateQueries.Rd | 15 ctrdata-1.25.0/ctrdata/man/ctrdata-registers.Rd | 16 ctrdata-1.25.0/ctrdata/man/ctrdata-trial-concepts.Rd | 10 ctrdata-1.25.0/ctrdata/man/figures/README-ctrdata_across_registers.png |binary ctrdata-1.25.0/ctrdata/man/figures/README-ctrdata_results_neuroblastoma.png |binary ctrdata-1.25.0/ctrdata/vignettes/boxpep.png |binary ctrdata-1.25.0/ctrdata/vignettes/ctrdata_retrieve.Rmd | 30 ctrdata-1.25.0/ctrdata/vignettes/ctrdata_summarise.Rmd | 265 ++-- ctrdata-1.25.0/ctrdata/vignettes/nbtrials.png |binary ctrdata-1.25.0/ctrdata/vignettes/phase23_paed_p_values.png |binary ctrdata-1.25.0/ctrdata/vignettes/phase23_paed_p_values_participants.png |binary ctrdata-1.25.0/ctrdata/vignettes/samplesizechanges.png |binary 56 files changed, 1533 insertions(+), 1332 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-25 0.1.0
Title: 'python' Modules from Snowpack and Avalanche Research
Description: The development of post-processing functionality for simulated snow profiles
by the snow and avalanche community is often done in 'python'. This package
aims to make some of these tools accessible to 'R' users. Currently integrated
modules contain functions to calculate dry snow layer instabilities in support
of avalache hazard assessments following the publications of Richter,
Schweizer, Rotach, and Van Herwijnen (2019) <doi:10.5194/tc-13-3353-2019>, and
Mayer, Van Herwijnen, Techel, and Schweizer (2022) <doi:10.5194/tc-2022-34>.
Author: Florian Herla [aut, cre],
Stephanie Mayer [aut],
SFU Avalanche Research Program [fnd]
Maintainer: Florian Herla <fherla@sfu.ca>
Diff between sarp.snowprofile.pyface versions 0.1.3 dated 2022-11-01 and 0.4.3 dated 2025-08-26
sarp.snowprofile.pyface-0.1.3/sarp.snowprofile.pyface/inst/python/RF_model_pub.sav |only sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/DESCRIPTION | 24 +++---- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/MD5 | 23 ++++--- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/NEWS.md | 4 + sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/R/computeCritCutLength.R | 8 +- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/R/computePunstable.R | 32 +++++----- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/R/import.R | 2 sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/R/zzz.R | 4 - sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/build |only sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/inst/python/RF_instability_model_published_2022.sav |only sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/inst/python/RF_instability_model_scikit121_2024.sav |only sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/inst/python/RF_instability_model_scikit152_2024.sav |only sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/man/computeCritCutLength.Rd | 10 +-- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/man/computePunstable.Rd | 21 ++++-- sarp.snowprofile.pyface-0.4.3/sarp.snowprofile.pyface/man/sarp.snowprofile.pyface-package.Rd | 2 15 files changed, 75 insertions(+), 55 deletions(-)
More information about sarp.snowprofile.pyface at CRAN
Permanent link
Title: Utilities for Graphical Rendering and Fonts Management
Description: Tools are provided to compute metrics of formatted strings
and to check the availability of a font. Another set of functions is
provided to support the collection of fonts from 'Google Fonts' in a
cache. Their use is simple within 'R Markdown' documents and 'shiny'
applications but also with graphic productions generated with the
'ggiraph', 'ragg' and 'svglite' packages or with tabular productions
from the 'flextable' package.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] ,
Yixuan Qiu [ctb],
R Core Team [cph] ,
ArData [cph],
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.4.2 dated 2025-03-27 and 0.4.3 dated 2025-08-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/sysdata.rda |binary src/Makevars.in | 2 +- tests/testthat/test-fonts.R | 5 +++-- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: 'SciViews::R' - HTTP Server
Description: A simple HTTP server allows to connect GUI clients to R.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svHttp versions 1.0.4 dated 2022-05-10 and 1.0.5 dated 2025-08-26
DESCRIPTION | 32 ++++-- MD5 | 25 +++-- NAMESPACE | 1 NEWS.md | 4 R/svHttp-package.R | 13 +- build/vignette.rds |binary inst/CITATION | 34 ++----- inst/doc/svHttp.R | 27 +++-- inst/doc/svHttp.Rmd | 23 ++--- inst/doc/svHttp.html | 230 +++++++++++++++++++++++++++----------------------- man/figures |only man/svHttp-package.Rd | 8 - tests/testthat |only tests/testthat.R |only vignettes/svHttp.Rmd | 23 ++--- 15 files changed, 221 insertions(+), 199 deletions(-)
Title: 'SciViews::R' - Manage GUIs in R
Description: Manage Graphical User Interfaces (GUI) in R. It is independent from
any particular GUI widgets ('Tk', 'Gtk2', native, ...). It centralizes info
about GUI elements currently used, and it dispatches GUI calls to the
particular toolkits in use in function of the context (is R run at the
terminal, within a 'Tk' application, a HTML page?).
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svGUI versions 1.0.1 dated 2021-04-16 and 1.0.2 dated 2025-08-26
DESCRIPTION | 41 +++--- MD5 | 33 ++-- NEWS.md | 65 ++++----- R/svGUI-package.R | 8 - build/vignette.rds |binary inst/CITATION | 35 +---- inst/doc/svGUI.R | 7 - inst/doc/svGUI.Rmd | 13 - inst/doc/svGUI.html | 277 +++++++++++++++++++++++++++-------------- man/figures |only man/setUI.Rd | 7 - man/svGUI-package.Rd | 15 -- tests/spelling.R | 4 tests/testthat.R | 11 + tests/testthat/test-dont_ask.R | 2 tests/testthat/test-gui.R | 10 - tests/testthat/test-gui_add.R | 8 - vignettes/svGUI.Rmd | 13 - 18 files changed, 317 insertions(+), 232 deletions(-)
Title: 'SciViews::R' - Standard Dialog Boxes using Tcl/Tk
Description: Reimplementation of the 'svDialogs' dialog boxes in Tcl/Tk.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svDialogstcltk versions 1.0.0 dated 2022-05-10 and 1.0.1 dated 2025-08-26
DESCRIPTION | 26 ++-- MD5 | 47 ++++---- NEWS.md | 6 + R/dlg_dir.tcltkGUI.R | 2 R/dlg_input.tcltkGUI.R | 2 R/dlg_list.tcltkGUI.R | 2 R/dlg_message.tcltkGUI.R | 2 R/dlg_open.tcltkGUI.R | 4 R/dlg_save.tcltkGUI.R | 2 R/svDialogstcltk-package.R | 26 ++-- build/vignette.rds |binary inst/CITATION | 34 ++---- inst/doc/svDialogstcltk.R | 10 - inst/doc/svDialogstcltk.Rmd | 10 + inst/doc/svDialogstcltk.html | 226 ++++++++++++++++++++++-------------------- man/dlg_dir.Rd | 2 man/dlg_input.Rd | 2 man/dlg_list.Rd | 4 man/dlg_message.Rd | 4 man/dlg_open.Rd | 6 - man/dlg_save.Rd | 4 man/figures |only man/svDialogstcltk-package.Rd | 21 +-- tests/testthat |only tests/testthat.R |only vignettes/svDialogstcltk.Rmd | 10 + 26 files changed, 235 insertions(+), 217 deletions(-)
More information about svDialogstcltk at CRAN
Permanent link
Title: 'SciViews::R' - Standard Dialog Boxes for Windows, MacOS and
Linuxes
Description: Quickly construct standard dialog boxes for your GUI, including
message boxes, input boxes, list, file or directory selection, ... In case R
cannot display GUI dialog boxes, a simpler command line version of these
interactive elements is also provided as fallback solution.
Author: Philippe Grosjean [aut, cre] ,
Paul Hibbins [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svDialogs versions 1.1.0 dated 2022-05-10 and 1.1.1 dated 2025-08-26
svDialogs-1.1.0/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.R |only svDialogs-1.1.0/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.Rmd |only svDialogs-1.1.0/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.html |only svDialogs-1.1.0/svDialogs/vignettes/Standard_dialog_boxes_for_everybody.Rmd |only svDialogs-1.1.1/svDialogs/DESCRIPTION | 31 +- svDialogs-1.1.1/svDialogs/MD5 | 29 +- svDialogs-1.1.1/svDialogs/NEWS.md | 4 svDialogs-1.1.1/svDialogs/R/dlg_save.R | 2 svDialogs-1.1.1/svDialogs/R/svDialogs-package.R | 11 svDialogs-1.1.1/svDialogs/build/vignette.rds |binary svDialogs-1.1.1/svDialogs/inst/CITATION | 34 -- svDialogs-1.1.1/svDialogs/inst/doc/svDialogs.R |only svDialogs-1.1.1/svDialogs/inst/doc/svDialogs.Rmd |only svDialogs-1.1.1/svDialogs/inst/doc/svDialogs.html |only svDialogs-1.1.1/svDialogs/man/figures |only svDialogs-1.1.1/svDialogs/man/svDialogs-package.Rd | 10 svDialogs-1.1.1/svDialogs/tests/spelling.R | 2 svDialogs-1.1.1/svDialogs/tests/testthat.R | 11 svDialogs-1.1.1/svDialogs/tests/testthat/test-dlg.R | 127 ++++------ svDialogs-1.1.1/svDialogs/vignettes/svDialogs.Rmd |only 20 files changed, 125 insertions(+), 136 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: Provides a unified interface to large language models across multiple
providers. Supports text generation, structured output with optional JSON
Schema validation, and embeddings. Includes tidyverse-friendly helpers,
chat session, consistent error handling, and parallel batch tools.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.5.0 dated 2025-07-16 and 0.6.0 dated 2025-08-26
LLMR-0.5.0/LLMR/inst/doc/demo.pdf |only LLMR-0.5.0/LLMR/inst/doc/demo.pdf.asis |only LLMR-0.5.0/LLMR/vignettes/presidential_embeddings.html |only LLMR-0.6.0/LLMR/DESCRIPTION | 20 LLMR-0.6.0/LLMR/MD5 | 98 + LLMR-0.6.0/LLMR/NAMESPACE | 24 LLMR-0.6.0/LLMR/NEWS.md |only LLMR-0.6.0/LLMR/R/LLMR.R | 876 +++++++++++------ LLMR-0.6.0/LLMR/R/LLMR_response.R |only LLMR-0.6.0/LLMR/R/LLMR_tidy.R | 463 ++++++-- LLMR-0.6.0/LLMR/R/LLM_chat_session.R | 149 +- LLMR-0.6.0/LLMR/R/LLM_parallel_utils.R | 280 +++-- LLMR-0.6.0/LLMR/R/LLM_param_translate.R | 59 - LLMR-0.6.0/LLMR/R/LLM_robust_utils.R | 93 + LLMR-0.6.0/LLMR/R/globalVariables.R | 13 LLMR-0.6.0/LLMR/R/json_mode.R |only LLMR-0.6.0/LLMR/R/secrets.R |only LLMR-0.6.0/LLMR/README.md | 302 +---- LLMR-0.6.0/LLMR/build/vignette.rds |binary LLMR-0.6.0/LLMR/inst/doc/about-schema.R |only LLMR-0.6.0/LLMR/inst/doc/about-schema.Rmd |only LLMR-0.6.0/LLMR/inst/doc/about-schema.html |only LLMR-0.6.0/LLMR/inst/doc/chat-basics.R |only LLMR-0.6.0/LLMR/inst/doc/chat-basics.Rmd |only LLMR-0.6.0/LLMR/inst/doc/chat-basics.html |only LLMR-0.6.0/LLMR/inst/doc/experiments.R |only LLMR-0.6.0/LLMR/inst/doc/experiments.Rmd |only LLMR-0.6.0/LLMR/inst/doc/experiments.html |only LLMR-0.6.0/LLMR/inst/doc/presidential_embeddings.R |only LLMR-0.6.0/LLMR/inst/doc/presidential_embeddings.Rmd |only LLMR-0.6.0/LLMR/inst/doc/presidential_embeddings.html |only LLMR-0.6.0/LLMR/inst/doc/tidy-and-structured.R |only LLMR-0.6.0/LLMR/inst/doc/tidy-and-structured.Rmd |only LLMR-0.6.0/LLMR/inst/doc/tidy-and-structured.html |only LLMR-0.6.0/LLMR/inst/examples |only LLMR-0.6.0/LLMR/man/bind_tools.Rd |only LLMR-0.6.0/LLMR/man/build_factorial_experiments.Rd | 3 LLMR-0.6.0/LLMR/man/cache_llm_call.Rd | 4 LLMR-0.6.0/LLMR/man/call_llm.Rd | 156 +-- LLMR-0.6.0/LLMR/man/call_llm_broadcast.Rd | 3 LLMR-0.6.0/LLMR/man/call_llm_compare.Rd | 6 LLMR-0.6.0/LLMR/man/call_llm_par.Rd | 20 LLMR-0.6.0/LLMR/man/call_llm_par_structured.Rd |only LLMR-0.6.0/LLMR/man/call_llm_robust.Rd | 21 LLMR-0.6.0/LLMR/man/call_llm_sweep.Rd | 3 LLMR-0.6.0/LLMR/man/disable_structured_output.Rd |only LLMR-0.6.0/LLMR/man/enable_structured_output.Rd |only LLMR-0.6.0/LLMR/man/llm_api_key_env.Rd |only LLMR-0.6.0/LLMR/man/llm_chat_session.Rd | 74 - LLMR-0.6.0/LLMR/man/llm_config.Rd | 87 + LLMR-0.6.0/LLMR/man/llm_fn.Rd | 91 - LLMR-0.6.0/LLMR/man/llm_fn_structured.Rd |only LLMR-0.6.0/LLMR/man/llm_mutate.Rd | 117 +- LLMR-0.6.0/LLMR/man/llm_mutate_structured.Rd |only LLMR-0.6.0/LLMR/man/llm_parse_structured.Rd |only LLMR-0.6.0/LLMR/man/llm_parse_structured_col.Rd |only LLMR-0.6.0/LLMR/man/llm_validate_structured_col.Rd |only LLMR-0.6.0/LLMR/man/llmr_response.Rd |only LLMR-0.6.0/LLMR/man/setup_llm_parallel.Rd | 4 LLMR-0.6.0/LLMR/tests/testthat/helper-keys.R |only LLMR-0.6.0/LLMR/tests/testthat/test-call_llm.R | 8 LLMR-0.6.0/LLMR/tests/testthat/test-json-mode.R |only LLMR-0.6.0/LLMR/tests/testthat/test-llm_fn.R | 4 LLMR-0.6.0/LLMR/vignettes/about-schema.Rmd |only LLMR-0.6.0/LLMR/vignettes/chat-basics.Rmd |only LLMR-0.6.0/LLMR/vignettes/demo.pdf |only LLMR-0.6.0/LLMR/vignettes/experiments.Rmd |only LLMR-0.6.0/LLMR/vignettes/presidential_embeddings.Rmd | 17 LLMR-0.6.0/LLMR/vignettes/tidy-and-structured.Rmd |only 69 files changed, 1922 insertions(+), 1073 deletions(-)
Title: Synthesizing Causal Evidence in a Distributed Research Network
Description: Routines for combining causal effect estimates and study diagnostics across multiple data sites in a distributed study, without sharing patient-level data.
Allows for normal and non-normal approximations of the data-site likelihood of the effect parameter.
Author: Martijn Schuemie [aut, cre],
Marc A. Suchard [aut],
Fan Bu [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EvidenceSynthesis versions 0.5.0 dated 2023-05-08 and 1.0.0 dated 2025-08-26
EvidenceSynthesis-0.5.0/EvidenceSynthesis/java/org/ohdsi/likelihood/EmpiricalModelLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/DESCRIPTION | 18 EvidenceSynthesis-1.0.0/EvidenceSynthesis/MD5 | 254 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/NAMESPACE | 136 EvidenceSynthesis-1.0.0/EvidenceSynthesis/NEWS.md | 225 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/BayesianBiasCorrection.R | 730 ++-- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/BayesianMetaAnalysis.R | 477 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/BayesianSynthesis.R | 474 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/CohortMethod.R | 806 ++-- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/EmpiricalCalibration.R | 484 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/EvidenceSynthesis.R | 68 EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/FixedEffectMetaAnalysis.R | 633 ++- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/HierarchicalMetaAnalysis.R |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/LikelihoodApproximation.R | 1298 ++++--- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/MetaAnalysis.R | 530 +-- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/Plots.R | 1637 +++++----- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/Simulation.R | 745 +++- EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/Utilities.R | 136 EvidenceSynthesis-1.0.0/EvidenceSynthesis/R/likelihoods-data.R | 181 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/README.md | 184 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/build/vignette.rds |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/data/hmaLikelihoodList.rda |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/data/likelihoodProfileLists.rda |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/BayesianBiasCorrection.R | 186 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/BayesianBiasCorrection.Rmd | 404 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/BayesianBiasCorrection.pdf |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/NonNormalEffectSynthesis.R | 186 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/NonNormalEffectSynthesis.Rmd | 441 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/NonNormalEffectSynthesis.pdf |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/VideoVignette.R | 297 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/VideoVignette.Rmd | 451 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/doc/VideoVignette.pdf |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/inst/java/EvidenceSynthesis.jar |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/EvidenceSynthesis.jardesc | 32 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/dr |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/lib |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/data/ColumnMajorSortedCoxData.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/data/CoxData.java | 332 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/data/GridWithGradientsData.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/data/SccsData.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/data/SortedCoxData.java | 78 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/hmc |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/CachedModelLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/ConditionalPoissonLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/CoxPartialLikelihood.java | 329 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/ExposureMisclassifiedLogisticLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/GridWithGradientsLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/MultivariableCoxPartialLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/likelihood/SccsPartialLikelihood.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/mcmc/Analysis.java | 106 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/mcmc/Runner.java | 386 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/CoxDataModel.java | 148 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/DataModel.java | 141 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/EmpiricalDataModel.java | 158 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/ExtendingEmpiricalDataModel.java | 190 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/GammaOnPrecisionPrior.java | 86 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/GridWithGradientsDataModel.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/HalfCauchyOnStdDevPrior.java | 82 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/HalfNormalOnStdDevPrior.java | 82 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/HierarchicalMetaAnalysis.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/JointAnalysis.java | 242 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/LocationHyperPrior.java | 58 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/MetaAnalysis.java | 314 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/MultivariableHierarchicalMetaAnalysis.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/MultivariatePrior.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/NormalDataModel.java | 180 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/ParametricDataModel.java | 190 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/RobustMetaAnalysis.java | 134 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/ScalePrior.java | 110 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/SccsDataModel.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/SkewNormalDataModel.java | 206 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/metaAnalysis/TLocationHyperPrior.java | 60 EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/mock |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/CoxAnalysis.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/CyclopsNormalAnalysis.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/ExposureMisclassifiedAnalysis.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/ProfileHierarchicalNormalAnalysis.java | 322 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/ProfileNormalAnalysis.java | 198 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/SimpleLinearModel.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/SimpleLinearModelGradient.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/SimpleLinearModelGradientWrtArgument.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/java/org/ohdsi/simpleDesign/SimpleLinearModelGradientWrtEffects.java |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/EvidenceSynthesis-package.Rd | 70 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/approximateHierarchicalNormalPosterior.Rd | 118 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/approximateLikelihood.Rd | 100 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/approximateSimplePosterior.Rd | 132 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/biasCorrectionInference.Rd | 168 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/buildLabelReferences.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/computeBayesianMetaAnalysis.Rd | 155 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/computeConfidenceInterval.Rd | 72 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/computeFixedEffectMetaAnalysis.Rd | 96 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/computeHierarchicalMetaAnalysis.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/constructDataModel.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/createApproximations.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/createSccsSimulationSettings.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/createSimulationSettings.Rd | 131 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/customFunction.Rd | 62 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/detectApproximationType.Rd | 50 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/extractSourceSpecificEffects.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/fitBiasDistribution.Rd | 120 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/generateBayesianHMAsettings.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/hermiteInterpolation.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/hmaLikelihoodList.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/likelihoodProfileLists.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/loadCyclopsLibraryForJava.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/ncLikelihoods.Rd | 60 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/ooiLikelihoods.Rd | 62 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotBiasCorrectionInference.Rd | 114 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotBiasDistribution.Rd | 100 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotCovariateBalances.Rd | 124 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotEmpiricalNulls.Rd | 124 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotLikelihoodFit.Rd | 118 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotMcmcTrace.Rd | 118 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotMetaAnalysisForest.Rd | 146 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotPerDbMcmcTrace.Rd | 118 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotPerDbPosterior.Rd | 112 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotPosterior.Rd | 116 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/plotPreparedPs.Rd | 102 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/preparePsPlot.Rd | 104 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/prepareSccsIntervalData.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/sequentialFitBiasDistribution.Rd | 78 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/simulateMetaAnalysisWithNegativeControls.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/simulatePopulations.Rd | 71 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/skewNormal.Rd | 68 EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/summarizeChain.Rd |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/man/supportsJava8.Rd | 36 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat.R | 4 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/pooledFixedFxEstimate.rds |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/pooledRandomFxEstimate.rds |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/populations.rds |binary EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/sccsPooledFixedFxEstimate.rds |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/sccsPooledRandomFxEstimate.rds |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/resources/sccsPopulations.rds |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-balance.R | 86 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-biasCorrection.R | 120 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-cyclopsViaJava.R |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-hierarchicalMetaAnalysis.R |only EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-java.R | 217 - EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-llAproximations.R | 138 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-nonNormalMetaAnalysis.R | 540 ++- EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-plots.R | 146 EvidenceSynthesis-1.0.0/EvidenceSynthesis/tests/testthat/test-simpleBayesianModel.R | 36 EvidenceSynthesis-1.0.0/EvidenceSynthesis/vignettes/BayesianBiasCorrection.Rmd | 404 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/vignettes/NonNormalEffectSynthesis.Rmd | 441 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/vignettes/VideoVignette.Rmd | 451 +- EvidenceSynthesis-1.0.0/EvidenceSynthesis/vignettes/randomFxPooled.rds |only 146 files changed, 10966 insertions(+), 9807 deletions(-)
More information about EvidenceSynthesis at CRAN
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Title: Varying Coefficient Meta-Analysis
Description: Implements functions for varying coefficient meta-analysis methods.
These methods do not assume effect size homogeneity. Subgroup effect size
comparisons, general linear effect size contrasts, and linear models of
effect sizes based on varying coefficient methods can be used to describe
effect size heterogeneity. Varying coefficient meta-analysis methods do not
require the unrealistic assumptions of the traditional fixed-effect and
random-effects meta-analysis methods. For details see:
Statistical Methods for Psychologists, Volume 5, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between vcmeta versions 1.4.0 dated 2024-07-04 and 1.5.0 dated 2025-08-26
vcmeta-1.4.0/vcmeta/man/meta.ave.fisher.Rd |only vcmeta-1.4.0/vcmeta/man/meta.ave.odds.Rd |only vcmeta-1.4.0/vcmeta/man/meta.lc.odds.Rd |only vcmeta-1.4.0/vcmeta/man/meta.lm.odds.Rd |only vcmeta-1.4.0/vcmeta/man/replicate.ratio.prop2.Rd |only vcmeta-1.4.0/vcmeta/man/se.odds.Rd |only vcmeta-1.4.0/vcmeta/man/se.semipartial.Rd |only vcmeta-1.5.0/vcmeta/DESCRIPTION | 19 vcmeta-1.5.0/vcmeta/MD5 | 163 ++++--- vcmeta-1.5.0/vcmeta/NAMESPACE | 20 vcmeta-1.5.0/vcmeta/NEWS.md | 17 vcmeta-1.5.0/vcmeta/R/meta_ave.R | 163 +++++-- vcmeta-1.5.0/vcmeta/R/meta_comp.R | 72 +-- vcmeta-1.5.0/vcmeta/R/meta_misc.R | 60 -- vcmeta-1.5.0/vcmeta/R/meta_model.R | 48 +- vcmeta-1.5.0/vcmeta/R/meta_plots.R | 6 vcmeta-1.5.0/vcmeta/R/meta_rep.R | 219 +++++++++- vcmeta-1.5.0/vcmeta/R/meta_se.R | 390 +++++++++++++------ vcmeta-1.5.0/vcmeta/build/partial.rdb |binary vcmeta-1.5.0/vcmeta/inst/REFERENCES.bib | 23 + vcmeta-1.5.0/vcmeta/man/cor.from.t.Rd | 11 vcmeta-1.5.0/vcmeta/man/meta.ave.agree.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.ave.cor.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.ave.cor.gen.Rd | 105 ++--- vcmeta-1.5.0/vcmeta/man/meta.ave.cronbach.Rd | 5 vcmeta-1.5.0/vcmeta/man/meta.ave.gen.cc.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.ave.gen.log.Rd |only vcmeta-1.5.0/vcmeta/man/meta.ave.gen.rc.Rd | 18 vcmeta-1.5.0/vcmeta/man/meta.ave.mean.ps.Rd | 14 vcmeta-1.5.0/vcmeta/man/meta.ave.meanratio.ps.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.ave.oddsratio.Rd |only vcmeta-1.5.0/vcmeta/man/meta.ave.pbcor.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.ave.plot.Rd | 8 vcmeta-1.5.0/vcmeta/man/meta.ave.prop.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.ave.var.Rd | 4 vcmeta-1.5.0/vcmeta/man/meta.lc.agree.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.lc.mean.ps.Rd | 6 vcmeta-1.5.0/vcmeta/man/meta.lc.meanratio.ps.Rd | 10 vcmeta-1.5.0/vcmeta/man/meta.lc.oddsratio.Rd |only vcmeta-1.5.0/vcmeta/man/meta.lc.prop.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.lc.prop1.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.lc.propratio2.Rd | 5 vcmeta-1.5.0/vcmeta/man/meta.lc.stdmean.ps.Rd | 4 vcmeta-1.5.0/vcmeta/man/meta.lm.agree.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.lm.cronbach.Rd | 5 vcmeta-1.5.0/vcmeta/man/meta.lm.meanratio.ps.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.lm.meanratio2.Rd | 3 vcmeta-1.5.0/vcmeta/man/meta.lm.oddsratio.Rd |only vcmeta-1.5.0/vcmeta/man/meta.lm.prop.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.lm.propratio2.Rd | 4 vcmeta-1.5.0/vcmeta/man/meta.lm.stdmean.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/meta.sub.cronbach.Rd | 5 vcmeta-1.5.0/vcmeta/man/meta.sub.gen.Rd | 116 ++--- vcmeta-1.5.0/vcmeta/man/replicate.agree.Rd |only vcmeta-1.5.0/vcmeta/man/replicate.cor.gen.Rd | 118 ++--- vcmeta-1.5.0/vcmeta/man/replicate.cronbach.Rd |only vcmeta-1.5.0/vcmeta/man/replicate.mean2.Rd | 6 vcmeta-1.5.0/vcmeta/man/replicate.plot.Rd | 2 vcmeta-1.5.0/vcmeta/man/replicate.prop.ps.Rd | 131 +++--- vcmeta-1.5.0/vcmeta/man/replicate.prop1.Rd | 2 vcmeta-1.5.0/vcmeta/man/replicate.propratio2.Rd |only vcmeta-1.5.0/vcmeta/man/replicate.slope.Rd | 4 vcmeta-1.5.0/vcmeta/man/se.agree.Rd |only vcmeta-1.5.0/vcmeta/man/se.biphi.Rd | 11 vcmeta-1.5.0/vcmeta/man/se.bscor.Rd | 140 +++--- vcmeta-1.5.0/vcmeta/man/se.cohen.Rd | 86 ++-- vcmeta-1.5.0/vcmeta/man/se.cor.Rd | 17 vcmeta-1.5.0/vcmeta/man/se.mean.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/se.mean2.Rd | 15 vcmeta-1.5.0/vcmeta/man/se.meanratio.ps.Rd | 9 vcmeta-1.5.0/vcmeta/man/se.meanratio2.Rd | 16 vcmeta-1.5.0/vcmeta/man/se.oddsratio.Rd |only vcmeta-1.5.0/vcmeta/man/se.pbcor.Rd | 2 vcmeta-1.5.0/vcmeta/man/se.prop.ps.Rd | 27 - vcmeta-1.5.0/vcmeta/man/se.prop2.Rd | 32 - vcmeta-1.5.0/vcmeta/man/se.propratio.ps.Rd |only vcmeta-1.5.0/vcmeta/man/se.propratio2.Rd |only vcmeta-1.5.0/vcmeta/man/se.semipart.Rd |only vcmeta-1.5.0/vcmeta/man/se.slope.Rd | 12 vcmeta-1.5.0/vcmeta/man/se.spear.Rd | 11 vcmeta-1.5.0/vcmeta/man/se.stdmean.ps.Rd | 2 vcmeta-1.5.0/vcmeta/man/se.stdmean2.Rd | 2 vcmeta-1.5.0/vcmeta/man/se.tetra.Rd | 18 vcmeta-1.5.0/vcmeta/tests/testthat/_snaps |only vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_ave.R | 47 ++ vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_comp.R | 22 + vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_misc.R | 23 - vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_model.R | 34 + vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_rep.R | 73 ++- vcmeta-1.5.0/vcmeta/tests/testthat/test_meta_se.R | 83 +++- 90 files changed, 1592 insertions(+), 910 deletions(-)
Title: Data Files Supporting "Scientific Research and Methodology" by
Peter K. Dunn (2025)
Description: Provides most of the data files used in the textbook "Scientific Research and Methodology" by Dunn (2025, ISBN: 9781032496726).
Author: Peter K. Dunn [aut, cre]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between SRMData versions 1.0.1 dated 2025-05-28 and 1.0.2 dated 2025-08-26
DESCRIPTION | 10 - MD5 | 417 ++++++++++++++++++++++++------------------------- NAMESPACE | 2 NEWS.md |only R/AISsub.R | 6 R/Anorexia.R | 2 R/Burros.R | 4 R/Corollas.R | 9 - R/CrabShells2.R | 4 R/CrabShells3.R | 4 R/DogWalks.R | 4 R/DogsLife.R | 4 R/EDpatients.R | 4 R/EVpurchase.R | 4 R/EarInfection.R | 4 R/Flowering.R | 4 R/ForwardFall.R | 5 R/Fruit.R | 4 R/Gorillas.R | 5 R/MaryRiver.R | 4 R/Mumps.R | 6 R/PainRelief.R | 10 + R/Placebos.R | 11 + R/RipsID.R | 4 R/Sanddollars.R | 5 R/ShoppingBags.R | 4 R/Stress.R | 3 R/StudentWt.R | 3 R/Tape.R | 4 R/Throttle.R | 4 R/Turbines.R | 5 R/YieldDen.R | 10 - README.md | 4 build/partial.rdb |binary data/AISsub.rda |binary data/Anorexia.rda |binary data/B12Diet.rda |binary data/BMI.rda |binary data/BabyBoom.rda |binary data/Battery.rda |binary data/Bitumen.rda |binary data/BodyTemp.rda |binary data/BoneQuality.rda |binary data/Borers.rda |binary data/Burros.rda |binary data/Captopril.rda |binary data/CarCrashes.rda |binary data/CherryRipe.rda |binary data/Corollas.rda |binary data/CrabShells2.rda |binary data/CrabShells3.rda |binary data/Cyclones.rda |binary data/DanishLC.rda |binary data/Deceleration.rda |binary data/Dental.rda |binary data/Diabetes.rda |binary data/DogWalks.rda |binary data/Dogs.rda |binary data/DogsLife.rda |binary data/EDpatients.rda |binary data/EVpurchase.rda |binary data/EarInfection.rda |binary data/Elephants.rda |binary data/EmeraldAug.rda |binary data/Ferritin.rda |binary data/Flowering.rda |binary data/Fluoro.rda |binary data/ForwardFall.rda |binary data/FriesWt.rda |binary data/Fruit.rda |binary data/Gorillas.rda |binary data/HCrabs.rda |binary data/HatSunglasses.rda |binary data/IgE.rda |binary data/Insulation.rda |binary data/Jeans.rda |binary data/Jellyfish.rda |binary data/Jumping.rda |binary data/KStones.rda |binary data/LHconc.rda |binary data/Lime.rda |binary data/LungCap.rda |binary data/Mandible.rda |binary data/MaryRiver.rda |binary data/Mumps.rda |binary data/NMiner.rda |binary data/OSA.rda |binary data/Orthoses.rda |binary data/PainRelief.rda |binary data/Peas.rda |binary data/Perm.rda |binary data/PetBirds.rda |binary data/PizzaSize.rda |binary data/Placebos.rda |binary data/Possums.rda |binary data/PremierL.rda |binary data/QSchools.rda |binary data/ReactionTime.rda |binary data/RedDeer.rda |binary data/Removal.rda |binary data/RipsID.rda |binary data/Running.rda |binary data/SDrink.rda |binary data/Sanddollars.rda |binary data/ScarHeight.rda |binary data/ShoppingBags.rda |binary data/SixMWT.rda |binary data/Snakes.rda |binary data/SoilCN.rda |binary data/Soils.rda |binary data/Speed.rda |binary data/Stress.rda |binary data/StudentWt.rda |binary data/StudentsEat.rda |binary data/Tape.rda |binary data/Throttle.rda |binary data/Turbines.rda |binary data/TurtleNests.rda |binary data/Typing.rda |binary data/WCTennis.rda |binary data/WaterAccess.rda |binary data/Windmill.rda |binary data/YieldDen.rda |binary man/AISsub.Rd | 10 - man/Anorexia.Rd | 10 - man/B12Diet.Rd | 10 - man/BMI.Rd | 28 +-- man/BabyBoom.Rd | 6 man/Battery.Rd | 10 - man/Bitumen.Rd | 6 man/BodyTemp.Rd | 7 man/BoneQuality.Rd | 10 - man/Borers.Rd | 4 man/Burros.Rd | 13 - man/Captopril.Rd | 7 man/CarCrashes.Rd | 4 man/CherryRipe.Rd | 4 man/Corollas.Rd | 9 + man/CrabShells2.Rd | 12 - man/CrabShells3.Rd | 11 - man/Cyclones.Rd | 25 +- man/DanishLC.Rd | 13 - man/Deceleration.Rd | 7 man/Dental.Rd | 15 - man/Diabetes.Rd | 15 - man/DogWalks.Rd | 6 man/Dogs.Rd | 4 man/DogsLife.Rd | 6 man/EDpatients.Rd | 6 man/EVpurchase.Rd | 17 + man/EarInfection.Rd | 21 +- man/Elephants.Rd | 4 man/EmeraldAug.Rd | 7 man/Ferritin.Rd | 4 man/Flowering.Rd | 14 + man/Fluoro.Rd | 4 man/ForwardFall.Rd | 7 man/FriesWt.Rd | 3 man/Fruit.Rd | 8 man/Gorillas.Rd | 7 man/HCrabs.Rd | 10 - man/HatSunglasses.Rd | 13 - man/IgE.Rd | 4 man/Insulation.Rd | 4 man/Jeans.Rd | 3 man/Jellyfish.Rd | 8 man/Jumping.Rd | 3 man/KStones.Rd | 10 - man/LHconc.Rd | 16 - man/Lime.Rd | 7 man/LungCap.Rd | 7 man/Mandible.Rd | 6 man/MaryRiver.Rd | 5 man/Mumps.Rd | 14 + man/NMiner.Rd | 4 man/OSA.Rd | 9 - man/Orthoses.Rd | 12 - man/PainRelief.Rd | 24 +- man/Peas.Rd | 4 man/Perm.Rd | 4 man/PetBirds.Rd | 11 - man/PizzaSize.Rd | 5 man/Placebos.Rd | 15 + man/Possums.Rd | 3 man/PremierL.Rd | 12 - man/QSchools.Rd | 13 - man/ReactionTime.Rd | 7 man/RipsID.Rd | 15 - man/Running.Rd | 15 - man/SDrink.Rd | 7 man/Sanddollars.Rd | 11 - man/ScarHeight.Rd | 4 man/ShoppingBags.Rd | 12 - man/SixMWT.Rd | 4 man/Snakes.Rd | 7 man/SoilCN.Rd | 16 - man/Soils.Rd | 7 man/Speed.Rd | 7 man/Stress.Rd | 11 - man/StudentWt.Rd | 5 man/StudentsEat.Rd | 10 - man/Tape.Rd | 9 - man/Throttle.Rd | 11 - man/Turbines.Rd | 9 - man/TurtleNests.Rd | 15 - man/Typing.Rd | 4 man/WCTennis.Rd | 4 man/WaterAccess.Rd | 32 +-- man/Windmill.Rd | 4 man/YieldDen.Rd | 11 + 210 files changed, 867 insertions(+), 523 deletions(-)
Title: Lightweight Graph Based Multiple Comparison Procedures
Description: A lightweight fork of 'gMCP' with functions for graphical
described multiple test procedures introduced in
Bretz et al. (2009) <doi:10.1002/sim.3495> and
Bretz et al. (2011) <doi:10.1002/bimj.201000239>.
Implements a flexible function using 'ggplot2' to create
multiplicity graph visualizations.
Contains instructions of multiplicity graph and graphical testing for
group sequential design, described in
Maurer and Bretz (2013) <doi:10.1080/19466315.2013.807748>,
with necessary unit testing using 'testthat'.
Author: Yalin Zhu [aut] ,
Yilong Zhang [aut],
Xuan Deng [aut],
Keaven Anderson [aut],
Nan Xiao [aut, cre] ,
Kornelius Rohmeyer [ctb] ,
Florian Klinglmueller [ctb] ,
gMCP project contributors [cph] ,
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Nan Xiao <nan.xiao1@merck.com>
Diff between gMCPLite versions 0.1.5 dated 2024-01-11 and 0.1.6 dated 2025-08-26
DESCRIPTION | 15 +-- MD5 | 34 ++++---- NEWS.md | 15 +++ R/exampleGraphs.R | 3 R/gMCP.R | 3 R/gMCP.extended.R | 1 R/graphMCP.R | 1 README.md | 7 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/GraphicalMultiplicity.html | 152 ++++++++++++++++++------------------ inst/doc/hGraph.html | 141 ++++++++++++++++----------------- man/exampleGraphs.Rd | 1 man/gMCP.Rd | 1 man/gMCP.extended.Rd | 1 man/rejectNode.Rd | 1 man/simConfint.Rd | 1 tests/testthat/test-hgraph.R | 68 +++++++++++++--- 18 files changed, 255 insertions(+), 190 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel, and 'Rcpp'
has been used to speed up calculations.
For more info about Gaussian process software, see Erickson et al. (2018)
<doi:10.1016/j.ejor.2017.10.002>.
Author: Collin Erickson [aut, cre]
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.15 dated 2025-04-08 and 0.2.16 dated 2025-08-26
DESCRIPTION | 8 MD5 | 20 NEWS.md | 6 build/vignette.rds |binary inst/doc/CrossValidationErrorCorrection.html | 24 inst/doc/GauPro.html | 14 inst/doc/IntroductionToGPs.html | 4 inst/doc/derivatives.html | 4 inst/doc/surface_derivatives.html | 4 tests/testthat/Rplots.pdf |binary tests/testthat/test_kernel_model_and_kernels.R | 674 ++++++++++++------------- 11 files changed, 393 insertions(+), 365 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.9.0 dated 2025-06-10 and 4.9.0.1 dated 2025-08-26
DESCRIPTION | 6 - MD5 | 14 +- R/mcmc.diagnostics.ergm.R | 4 build/partial.rdb |binary build/stage23.rdb |binary inst/doc/ergm-term-crossRef.html | 42 +++----- inst/doc/ergm.html | 204 +++++++++++++++++++-------------------- inst/doc/nodal_attributes.html | 9 - 8 files changed, 138 insertions(+), 141 deletions(-)
Title: Exponential Multivariate Hawkes Model
Description: Simulate and fitting exponential multivariate Hawkes model.
This package simulates a multivariate Hawkes model, introduced by Hawkes (1971) <doi:10.2307/2334319>, with an exponential kernel and fits the parameters from the data.
Models with the constant parameters, as well as complex dependent structures, can also be simulated and estimated.
The estimation is based on the maximum likelihood method, introduced by introduced by Ozaki (1979) <doi:10.1007/BF02480272>, with 'maxLik' package.
Author: Kyungsub Lee [aut, cre]
Maintainer: Kyungsub Lee <kyungsub@gmail.com>
Diff between emhawkes versions 0.9.7 dated 2023-02-02 and 0.9.8 dated 2025-08-26
DESCRIPTION | 19 MD5 | 51 - NAMESPACE | 7 NEWS.md | 9 R/harrival.R | 255 +++++- R/hfit.R | 239 ++---- R/hgfit.R | 106 +- R/hllf.R | 490 +++++++++---- R/hreal.R | 58 - R/hsim.R | 138 ++- R/hspec.R | 296 ++++++-- R/tzexp.R |only R/utilities.R | 177 ++-- R/zzz.R |only README.md | 6 build/vignette.rds |binary inst/doc/example.R | 372 ---------- inst/doc/example.Rmd | 746 +------------------- inst/doc/example.html | 1837 +++++++------------------------------------------- man/expected_tau.Rd |only man/hfit.Rd | 58 - man/hreal.Rd | 39 - man/hsim.Rd | 28 man/hspec-class.Rd | 50 - man/infer_lambda.Rd | 8 man/logLik.Rd | 31 man/set_residual.Rd |only man/tzexp.Rd |only vignettes/example.Rmd | 746 +------------------- 29 files changed, 1737 insertions(+), 4029 deletions(-)