Title: Multicountry Term Structure of Interest Rates Models
Description: Estimation routines for several classes of affine term structure of interest rates models. All the models are based on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions such as the ones of Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (2024, JFEC) <doi:10.1093/jjfinec/nbae008> are also available.
Author: Rubens Moura [aut, cre]
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 1.3.1 dated 2025-05-11 and 1.4.0 dated 2025-09-01
MultiATSM-1.3.1/MultiATSM/R/FMN__Rotate.R |only MultiATSM-1.3.1/MultiATSM/R/Out_Examples.R |only MultiATSM-1.3.1/MultiATSM/man/FMN__Rotate.Rd |only MultiATSM-1.3.1/MultiATSM/man/Reg__OLSconstrained.Rd |only MultiATSM-1.3.1/MultiATSM/man/mult__prod.Rd |only MultiATSM-1.4.0/MultiATSM/DESCRIPTION | 13 MultiATSM-1.4.0/MultiATSM/MD5 | 164 +- MultiATSM-1.4.0/MultiATSM/NAMESPACE | 26 MultiATSM-1.4.0/MultiATSM/R/A0N__BnAn.R | 2 MultiATSM-1.4.0/MultiATSM/R/BiasCorrection.R | 70 - MultiATSM-1.4.0/MultiATSM/R/Bootstrap.R | 143 +- MultiATSM-1.4.0/MultiATSM/R/Buildx_xvec.R | 18 MultiATSM-1.4.0/MultiATSM/R/Classes_Methods_All.R | 237 +++ MultiATSM-1.4.0/MultiATSM/R/ConfidenceBoundsBootstrap.R | 200 ++- MultiATSM-1.4.0/MultiATSM/R/DatabasePrep.R | 19 MultiATSM-1.4.0/MultiATSM/R/Example_InpOut.R |only MultiATSM-1.4.0/MultiATSM/R/Example_NumOut.R |only MultiATSM-1.4.0/MultiATSM/R/Example_Para.R |only MultiATSM-1.4.0/MultiATSM/R/Examples_Out.R |only MultiATSM-1.4.0/MultiATSM/R/Folder_Creation.R | 38 MultiATSM-1.4.0/MultiATSM/R/ForecastYields.R | 50 MultiATSM-1.4.0/MultiATSM/R/Functionf_vectorized.R | 8 MultiATSM-1.4.0/MultiATSM/R/GVAR.R | 56 MultiATSM-1.4.0/MultiATSM/R/GraphicalOutputs.R | 849 +++++++++---- MultiATSM-1.4.0/MultiATSM/R/InputsForOpt.R | 66 - MultiATSM-1.4.0/MultiATSM/R/JLL.R | 26 MultiATSM-1.4.0/MultiATSM/R/MLEdensity.R | 155 -- MultiATSM-1.4.0/MultiATSM/R/MinorOptimizationFunctions.R | 6 MultiATSM-1.4.0/MultiATSM/R/NumOutputs.R | 118 + MultiATSM-1.4.0/MultiATSM/R/Optimization.R | 72 - MultiATSM-1.4.0/MultiATSM/R/RiskFactorsPrep.R | 10 MultiATSM-1.4.0/MultiATSM/R/Transition_Matrix.R | 6 MultiATSM-1.4.0/MultiATSM/R/VAR.R | 84 - MultiATSM-1.4.0/MultiATSM/data/InpForOutEx.rda |only MultiATSM-1.4.0/MultiATSM/data/NumOutEx.rda |only MultiATSM-1.4.0/MultiATSM/data/Out_Example.rda |binary MultiATSM-1.4.0/MultiATSM/data/ParaSetEx.rda |only MultiATSM-1.4.0/MultiATSM/data/datalist |only MultiATSM-1.4.0/MultiATSM/inst/doc/Guidelines.R | 264 ++-- MultiATSM-1.4.0/MultiATSM/inst/doc/Guidelines.Rmd | 66 - MultiATSM-1.4.0/MultiATSM/inst/doc/Guidelines.html | 453 +++--- MultiATSM-1.4.0/MultiATSM/inst/doc/Paper-Replications.R | 362 ++--- MultiATSM-1.4.0/MultiATSM/inst/doc/Paper-Replications.Rmd | 14 MultiATSM-1.4.0/MultiATSM/inst/doc/Paper-Replications.html | 232 +-- MultiATSM-1.4.0/MultiATSM/man/Bias_Correc_VAR.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Boot_Fac_Graphs.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Boot_Yields_Graphs.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Boot_graph_template.Rd | 2 MultiATSM-1.4.0/MultiATSM/man/Bootstrap.Rd | 35 MultiATSM-1.4.0/MultiATSM/man/BootstrapBoundsSet.Rd | 8 MultiATSM-1.4.0/MultiATSM/man/BuildRiskFactors_BS.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Check_comparison__OLS.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Check_label_consistency.Rd | 2 MultiATSM-1.4.0/MultiATSM/man/ComputeGIRFs.Rd | 2 MultiATSM-1.4.0/MultiATSM/man/Est_RestOLS.Rd |only MultiATSM-1.4.0/MultiATSM/man/FEVDandGFEVDbs.Rd | 8 MultiATSM-1.4.0/MultiATSM/man/FEVDandGFEVDgraphs.Rd | 37 MultiATSM-1.4.0/MultiATSM/man/FeedbackMat_BS.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Fitgraphs.Rd | 39 MultiATSM-1.4.0/MultiATSM/man/FolderCreationBoot.Rd | 4 MultiATSM-1.4.0/MultiATSM/man/FolderCreationPoint.Rd | 4 MultiATSM-1.4.0/MultiATSM/man/FolderCreation_Boot.Rd | 11 MultiATSM-1.4.0/MultiATSM/man/FolderPrep_FEVDs.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/FolderPrep_IRFs.Rd | 9 MultiATSM-1.4.0/MultiATSM/man/ForecastYields.Rd | 21 MultiATSM-1.4.0/MultiATSM/man/GaussianDensity.Rd | 14 MultiATSM-1.4.0/MultiATSM/man/Gen_Artificial_Series.Rd | 3 MultiATSM-1.4.0/MultiATSM/man/GetPdynPara.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/GetPdynPara_BC.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/GraphicalOutputs.Rd | 10 MultiATSM-1.4.0/MultiATSM/man/IRFandGIRFbs.Rd | 8 MultiATSM-1.4.0/MultiATSM/man/IRFandGIRFgraphs.Rd | 35 MultiATSM-1.4.0/MultiATSM/man/InpForOutEx.Rd |only MultiATSM-1.4.0/MultiATSM/man/InputsForOpt.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/MergeFEVD_graphs.Rd |only MultiATSM-1.4.0/MultiATSM/man/ModelParaEx.Rd |only MultiATSM-1.4.0/MultiATSM/man/NumOutEx.Rd |only MultiATSM-1.4.0/MultiATSM/man/NumOutputs.Rd | 31 MultiATSM-1.4.0/MultiATSM/man/Optimization.Rd | 22 MultiATSM-1.4.0/MultiATSM/man/OptimizationSetup_ATSM.Rd | 4 MultiATSM-1.4.0/MultiATSM/man/Optimization_PE.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/Optimization_Time.Rd | 4 MultiATSM-1.4.0/MultiATSM/man/Out.Rd | 4 MultiATSM-1.4.0/MultiATSM/man/OutputConstruction.Rd | 5 MultiATSM-1.4.0/MultiATSM/man/RiskFactorsGraphs.Rd | 34 MultiATSM-1.4.0/MultiATSM/man/Rotate_Lat_Obs.Rd |only MultiATSM-1.4.0/MultiATSM/man/TPDecompGraph.Rd | 31 MultiATSM-1.4.0/MultiATSM/man/VAR.Rd | 12 MultiATSM-1.4.0/MultiATSM/man/autoplot.ATSMModelBoot.Rd |only MultiATSM-1.4.0/MultiATSM/man/autoplot.ATSMNumOutputs.Rd |only MultiATSM-1.4.0/MultiATSM/man/autoplot.Rd |only MultiATSM-1.4.0/MultiATSM/man/shrink_Phi.Rd | 2 MultiATSM-1.4.0/MultiATSM/vignettes/Guidelines.Rmd | 66 - MultiATSM-1.4.0/MultiATSM/vignettes/Paper-Replications.Rmd | 14 94 files changed, 2766 insertions(+), 1597 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-19 6.8.3
Title: Fast Matrix Operations via the Woodbury Matrix Identity
Description: A hierarchy of classes and methods for manipulating matrices formed implicitly from the sums of the inverses of other matrices, a situation commonly encountered in spatial statistics and related fields. Enables easy use of the Woodbury matrix identity and the matrix determinant lemma to allow computation (e.g., solving linear systems) without having to form the actual matrix. More information on the underlying linear algebra can be found in Harville, D. A. (1997) <doi:10.1007/b98818>.
Author: Michael Bertolacci [aut, cre, cph]
Maintainer: Michael Bertolacci <m.bertolacci@gmail.com>
Diff between WoodburyMatrix versions 0.0.3 dated 2023-06-18 and 0.0.4 dated 2025-09-01
WoodburyMatrix-0.0.3/WoodburyMatrix/tests/testthat/test-lintr.R |only WoodburyMatrix-0.0.4/WoodburyMatrix/DESCRIPTION | 12 WoodburyMatrix-0.0.4/WoodburyMatrix/MD5 | 27 - WoodburyMatrix-0.0.4/WoodburyMatrix/R/WoodburyMatrix.R | 4 WoodburyMatrix-0.0.4/WoodburyMatrix/R/class-WoodburyMatrix.R | 32 +- WoodburyMatrix-0.0.4/WoodburyMatrix/R/solve.R | 4 WoodburyMatrix-0.0.4/WoodburyMatrix/build/vignette.rds |binary WoodburyMatrix-0.0.4/WoodburyMatrix/inst/doc/WoodburyMatrix.R | 2 WoodburyMatrix-0.0.4/WoodburyMatrix/inst/doc/WoodburyMatrix.html | 158 +++++----- WoodburyMatrix-0.0.4/WoodburyMatrix/man/WoodburyMatrix-class.Rd | 48 +-- WoodburyMatrix-0.0.4/WoodburyMatrix/man/WoodburyMatrix.Rd | 4 WoodburyMatrix-0.0.4/WoodburyMatrix/man/instantiate.Rd | 6 WoodburyMatrix-0.0.4/WoodburyMatrix/man/mahalanobis.Rd | 4 WoodburyMatrix-0.0.4/WoodburyMatrix/man/normal-distribution-methods.Rd | 6 WoodburyMatrix-0.0.4/WoodburyMatrix/man/solve-methods.Rd | 22 - 15 files changed, 165 insertions(+), 164 deletions(-)
More information about WoodburyMatrix at CRAN
Permanent link
Title: Massive Hierarchically Data Analysis
Description: Three main functions about analyzing massive data (missing observations are allowed) considered from multiple layers of categories are demonstrated. Flexible and diverse applications of the function parameters make the data analyses powerful.
Author: Yarong Yang [aut, cre],
Jacob Zhang [aut]
Maintainer: Yarong Yang <Yi.YA_yaya@hotmail.com>
Diff between MHDA versions 1.4 dated 2024-10-15 and 2.0 dated 2025-09-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- man/MHDA-package.Rd | 10 +++++++--- man/MHDA.Rd | 4 ++++ man/MHDA.plot.Rd | 6 +++++- man/Res.mhda.1-class.Rd | 2 +- man/Res.mhda.2-class.Rd | 2 +- man/Steps.analysis.Rd | 4 ++++ 8 files changed, 34 insertions(+), 18 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (3rd Edition)
Description: All data sets required for the examples and exercises in the book
"Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos
<https://OTexts.com/fpp3/>. All packages required to run the examples are also
loaded. Additional data sets not used in the book are also included.
Author: Rob Hyndman [aut, cre, cph] ,
George Athanasopoulos [ctb],
Mitchell O'Hara-Wild [ctb],
Nuwani Palihawadana [ctb],
Shanika Wickramasuriya [ctb],
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp3 versions 1.0.1 dated 2024-09-17 and 1.0.2 dated 2025-09-01
DESCRIPTION | 17 +++++++++-------- MD5 | 10 +++++----- NAMESPACE | 1 - NEWS.md | 4 ++++ R/fpp3.R | 1 - README.md | 12 ++++++------ 6 files changed, 24 insertions(+), 21 deletions(-)
Title: High-Level Modeling Functions with 'torch'
Description: Provides high-level modeling functions to define and train
models using the 'torch' R package. Models include linear, logistic,
and multinomial regression as well as multilayer perceptrons.
Author: Max Kuhn [aut, cre] ,
Daniel Falbel [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between brulee versions 0.5.0 dated 2025-04-07 and 0.6.0 dated 2025-09-01
DESCRIPTION | 9 MD5 | 90 - NAMESPACE | 2 NEWS.md | 22 R/0_utils.R | 116 + R/aaa.R | 59 R/activation.R | 41 R/autoplot.R | 43 R/checks.R | 410 +++--- R/coef.R | 75 - R/convert_data.R | 10 R/import-standalone-obj-type.R | 29 R/import-standalone-types-check.R | 276 ++-- R/linear_reg-fit.R | 293 ++-- R/linear_reg-predict.R | 40 R/logistic_reg-fit.R | 314 +++-- R/logistic_reg-predict.R | 48 R/mlp-fit.R | 1853 +++++++++++++++++------------- R/mlp-predict.R | 73 - R/multinomial_reg-fit.R | 315 +++-- R/multinomial_reg-predict.R | 53 R/schedulers.R | 91 - README.md | 16 inst/WORDLIST | 13 man/brulee-autoplot.Rd | 4 man/brulee-coefs.Rd | 7 man/brulee_linear_reg.Rd | 37 man/brulee_logistic_reg.Rd | 32 man/brulee_mlp.Rd | 74 - man/brulee_multinomial_reg.Rd | 32 man/matrix_to_dataset.Rd | 2 man/predict.brulee_linear_reg.Rd | 7 man/predict.brulee_logistic_reg.Rd | 14 man/predict.brulee_mlp.Rd | 4 man/predict.brulee_multinomial_reg.Rd | 12 man/reexports.Rd | 3 man/schedule_decay_time.Rd | 2 tests/testthat.R | 7 tests/testthat/test-class-weight.R | 8 tests/testthat/test-linear_reg-fit.R | 18 tests/testthat/test-logistic_reg-fit.R | 26 tests/testthat/test-mlp-activations.R | 8 tests/testthat/test-mlp-binary.R | 50 tests/testthat/test-mlp-multinomial.R | 39 tests/testthat/test-mlp-regression.R | 22 tests/testthat/test-multinomial_reg-fit.R | 22 46 files changed, 2760 insertions(+), 1961 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 14.6.3-1 dated 2025-08-20 and 15.0.1-1 dated 2025-09-01
RcppArmadillo-14.6.3-1/RcppArmadillo/inst/include/armadillo |only RcppArmadillo-14.6.3-1/RcppArmadillo/inst/include/armadillo_bits |only RcppArmadillo-14.6.3-1/RcppArmadillo/inst/include/legacy/armadillo_bits/config.hpp.cmake |only RcppArmadillo-15.0.1-1/RcppArmadillo/ChangeLog | 76 RcppArmadillo-15.0.1-1/RcppArmadillo/DESCRIPTION | 45 RcppArmadillo-15.0.1-1/RcppArmadillo/MD5 | 1965 ++++++---- RcppArmadillo-15.0.1-1/RcppArmadillo/README.md | 10 RcppArmadillo-15.0.1-1/RcppArmadillo/configure | 20 RcppArmadillo-15.0.1-1/RcppArmadillo/configure.ac | 4 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/NEWS.Rd | 37 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-15.0.1-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo.h | 3 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/Light | 3 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/Lighter | 3 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/Lightest | 3 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/RcppArmadillo | 3 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/interface/RcppArmadilloForward.h | 48 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadillo/version |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/RcppArmadilloExtensions/fixprob.h | 15 RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/current |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/BaseCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/BaseCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Base_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Base_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Col_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Col_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/CubeToMatOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/CubeToMatOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Cube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Cube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/GenCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/GenCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Gen_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Gen_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/GlueCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/GlueCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Glue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Glue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/MapMat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/MapMat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Mat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Mat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/OpCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/OpCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Op_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Op_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Proxy.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/ProxyCube.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Row_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/Row_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SizeCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SizeCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SizeMat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SizeMat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpBase_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpBase_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpCol_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpCol_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpGlue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpGlue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpMat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpMat_iterators_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpMat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpProxy.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpRow_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpRow_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpSubview_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpSubview_col_list_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpSubview_col_list_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpSubview_iterators_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpSubview_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpToDGlue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpToDGlue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpToDOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpToDOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpValProxy_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/SpValProxy_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/access.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_cmath.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_config.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_forward.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_ostream_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_ostream_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_rel_comparators.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_rng.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_rng_cxx03.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_static_check.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_str.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arma_version.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arrayops_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/arrayops_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/auxlib_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/auxlib_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/band_helper.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/compiler_check.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/compiler_setup.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/compiler_setup_post.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/cond_rel_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/cond_rel_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/config.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/constants.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/constants_old.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/csv_name.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/debug.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_arpack.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_atlas.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_blas.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_fftw3.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_lapack.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/def_superlu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/diagmat_proxy.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/diagview_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/diagview_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/diskio_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/diskio_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/distr_param.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eGlueCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eGlueCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eGlue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eGlue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eOpCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eOpCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eglue_core_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eglue_core_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eop_aux.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eop_core_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/eop_core_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fft_engine_fftw3.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fft_engine_kissfft.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/field_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/field_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fill.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_accu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_all.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_any.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_approx_equal.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_as_scalar.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_balance.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_chi2rnd.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_chol.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_clamp.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cond_rcond.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_conv.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_conv_to.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cor.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cov.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cross.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cumprod.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_cumsum.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_det.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_diagmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_diags_spdiags.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_diagvec.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_diff.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_dot.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eig_gen.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eig_pair.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eig_sym.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eigs_gen.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eigs_sym.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_elem.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eps.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_expmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_eye.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_fft.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_fft2.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_find.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_find_unique.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_flip.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_hess.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_hist.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_histc.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_index_max.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_index_min.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_inplace_strans.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_inplace_trans.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_interp1.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_interp2.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_intersect.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_inv.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_inv_sympd.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_join.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_kmeans.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_kron.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_log_det.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_log_normpdf.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_logmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_lu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_max.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_mean.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_median.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_min.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_misc.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_mvnrnd.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_n_unique.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_nonzeros.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_norm.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_normalise.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_normcdf.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_normpdf.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_numel.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_omit.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_ones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_orth_null.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_pinv.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_polyfit.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_polyval.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_powext.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_powmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_princomp.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_prod.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_qr.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_quantile.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_qz.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_randg.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_randi.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_randn.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_randperm.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_randu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_range.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_rank.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_regspace.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_repelem.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_repmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_reshape.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_resize.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_reverse.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_roots.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_schur.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_shift.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_shuffle.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_size.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_solve.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sort.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sort_index.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_speye.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_spones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sprandn.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sprandu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_spsolve.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sqrtmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_stddev.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_strans.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sum.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_svd.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_svds.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_sylvester.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_symmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_toeplitz.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trace.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trans.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trapz.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trig.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trimat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trimat_ind.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trunc_exp.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_trunc_log.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_unique.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_var.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_vecnorm.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_vectorise.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_wishrnd.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/fn_zeros.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_affmul_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_affmul_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_atan2_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_atan2_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_conv_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_conv_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cor_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cor_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cov_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cov_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cross_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_cross_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_hist_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_hist_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_histc_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_histc_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_hypot_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_hypot_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_intersect_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_intersect_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_join_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_join_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_kron_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_kron_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_max_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_max_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_min_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_min_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_mixed_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_mixed_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_mvnrnd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_mvnrnd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_polyfit_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_polyfit_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_polyval_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_polyval_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_powext_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_powext_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_quantile_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_quantile_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_relational_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_relational_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_solve_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_solve_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_times_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_times_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_times_misc_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_times_misc_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_toeplitz_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_toeplitz_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_trapz_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/glue_trapz_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_diag_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_diag_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_full_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_full_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_misc_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/gmm_misc_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/hdf5_misc.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/hdf5_name.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/include_hdf5.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/include_superlu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/injector_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/injector_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/memory.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mp_misc.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtGlueCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtGlueCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtGlue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtGlue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtOpCube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtOpCube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpGlue_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpGlue_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpReduceOp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mtSpReduceOp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mul_gemm.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mul_gemm_mixed.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mul_gemv.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mul_herk.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/mul_syrk.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_DenseGenMatProd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_DenseGenMatProd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_DoubleShiftQR_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_DoubleShiftQR_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_EigsSelect.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_GenEigsSolver_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_GenEigsSolver_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SortEigenvalue.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SparseGenMatProd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SparseGenMatProd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SparseGenRealShiftSolve_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SparseGenRealShiftSolve_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SymEigsShiftSolver_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SymEigsShiftSolver_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SymEigsSolver_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_SymEigsSolver_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_TridiagEigen_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_TridiagEigen_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_UpperHessenbergEigen_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_UpperHessenbergQR_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/newarp_cx_attrib.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_all_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_all_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_any_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_any_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_chi2rnd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_chi2rnd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_chol_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_chol_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_clamp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_clamp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_col_as_mat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_col_as_mat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cond_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cond_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cor_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cor_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cov_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cov_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cumprod_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cumprod_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cumsum_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cumsum_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cx_scalar_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_cx_scalar_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_det_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_det_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diagmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diagmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diagvec_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diagvec_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diff_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_diff_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_dot_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_dot_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_dotext_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_dotext_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_expmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_expmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_fft_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_fft_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_find_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_find_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_find_unique_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_find_unique_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_flip_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_flip_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_hist_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_hist_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_htrans_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_htrans_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_index_max_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_index_max_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_index_min_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_index_min_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_inv_gen_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_inv_gen_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_inv_spd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_inv_spd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_log_det_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_log_det_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_logmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_logmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_max_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_max_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_mean_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_mean_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_median_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_median_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_min_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_min_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_misc_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_misc_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_nonzeros_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_nonzeros_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_norm2est_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_norm2est_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_norm_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_norm_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_normalise_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_normalise_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_omit_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_omit_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_orth_null_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_orth_null_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_pinv_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_pinv_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_powmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_powmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_princomp_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_princomp_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_prod_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_prod_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_range_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_range_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_rank_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_rank_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_rcond_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_rcond_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_relational_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_relational_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_repelem_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_repelem_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_repmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_repmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_reshape_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_reshape_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_resize_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_resize_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_reverse_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_reverse_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_roots_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_roots_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_row_as_mat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_row_as_mat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_shift_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_shift_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_shuffle_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_shuffle_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sort_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sort_index_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sort_index_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sort_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_as_dense_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_as_dense_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_diagvec_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_diagvec_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_max_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_max_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_mean_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_mean_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_min_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_min_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_minus_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_minus_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_nonzeros_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_nonzeros_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_plus_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_plus_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_stddev_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_stddev_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_sum_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_sum_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_var_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_var_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_vecnorm_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sp_vecnorm_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sqrtmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sqrtmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_stddev_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_stddev_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_strans_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_strans_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sum_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_sum_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_symmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_symmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_toeplitz_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_toeplitz_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_trimat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_trimat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_unique_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_unique_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_var_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_var_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_vecnorm_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_vecnorm_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_vectorise_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_vectorise_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_wishrnd_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/op_wishrnd_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_div.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_minus.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_plus.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_relational.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_schur.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_cube_times.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_div.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_minus.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_ostream.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_plus.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_relational.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_schur.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/operator_times.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/podarray_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/podarray_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/promote_type.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/restrictors.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/running_stat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/running_stat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/running_stat_vec_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/running_stat_vec_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/sp_auxlib_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/sp_auxlib_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/span.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spdiagview_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spdiagview_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_join_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_join_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_kron_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_kron_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_max_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_max_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_merge_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_merge_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_min_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_min_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_minus_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_minus_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_plus_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_plus_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_relational_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_relational_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_schur_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_schur_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_times_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spglue_times_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_diagmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_diagmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_htrans_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_htrans_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_misc_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_misc_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_norm_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_norm_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_normalise_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_normalise_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_omit_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_omit_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_relational_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_relational_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_repmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_repmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_reverse_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_reverse_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_shift_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_shift_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_strans_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_strans_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_symmat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_symmat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_trimat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_trimat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_vectorise_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spop_vectorise_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spsolve_factoriser_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/spsolve_factoriser_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/strip.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_each_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_each_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_slices_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_cube_slices_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_each_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_each_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_elem1_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_elem1_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_elem2_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_elem2_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_field_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_field_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/subview_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/sym_helper.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/traits.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_arpack.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_atlas.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_blas.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_fftw3.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_lapack.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/translate_superlu.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/trimat_helper.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/typedef_elem.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/typedef_elem_check.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/typedef_mat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/typedef_mat_fixed.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/unwrap.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/unwrap_cube.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/unwrap_spmat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/upgrade_val.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/wall_clock_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/wall_clock_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/xtrans_mat_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/xtrans_mat_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/xvec_htrans_bones.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/inst/include/legacy/armadillo_bits/xvec_htrans_meat.hpp |only RcppArmadillo-15.0.1-1/RcppArmadillo/src/Makevars.in | 17 RcppArmadillo-15.0.1-1/RcppArmadillo/src/Makevars.win | 17 665 files changed, 1526 insertions(+), 743 deletions(-)
Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program
simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>].
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] ,
Gregor Gorjanc [ctb] ,
John Hickey [ctb] ,
Daniel Money [ctb] ,
David Wilson [ctb],
Thiago Oliveira [ctb] ,
Audrey Martin [ctb] ,
Philip Greenspoon [ctb] ,
Ros Craddock [ctb]
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>
Diff between AlphaSimR versions 1.6.1 dated 2024-11-01 and 2.0.0 dated 2025-09-01
AlphaSimR-1.6.1/AlphaSimR/inst/doc/intro.R |only AlphaSimR-1.6.1/AlphaSimR/inst/doc/intro.Rmd |only AlphaSimR-1.6.1/AlphaSimR/inst/doc/intro.html |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/AlphaSimR.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/DataImport.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/GenomicSelection.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/Meiosis.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/Misc.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/QuantGen.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/articles/Traits.Rmd |only AlphaSimR-1.6.1/AlphaSimR/vignettes/intro.Rmd |only AlphaSimR-2.0.0/AlphaSimR/DESCRIPTION | 29 AlphaSimR-2.0.0/AlphaSimR/LICENSE | 2 AlphaSimR-2.0.0/AlphaSimR/MD5 | 384 AlphaSimR-2.0.0/AlphaSimR/NAMESPACE | 320 AlphaSimR-2.0.0/AlphaSimR/NEWS.md | 854 - AlphaSimR-2.0.0/AlphaSimR/R/AlphaSimR.R | 58 AlphaSimR-2.0.0/AlphaSimR/R/Class-HybridPop.R | 256 AlphaSimR-2.0.0/AlphaSimR/R/Class-LociMap.R | 752 - AlphaSimR-2.0.0/AlphaSimR/R/Class-Pop.R | 2119 +-- AlphaSimR-2.0.0/AlphaSimR/R/Class-RRsol.R | 54 AlphaSimR-2.0.0/AlphaSimR/R/Class-SimParam.R | 5399 +++++----- AlphaSimR-2.0.0/AlphaSimR/R/GS.R | 3064 ++--- AlphaSimR-2.0.0/AlphaSimR/R/RcppExports.R | 746 - AlphaSimR-2.0.0/AlphaSimR/R/crossing.R | 1796 +-- AlphaSimR-2.0.0/AlphaSimR/R/founderPop.R | 1222 +- AlphaSimR-2.0.0/AlphaSimR/R/hybrids.R | 862 - AlphaSimR-2.0.0/AlphaSimR/R/importData.R | 592 - AlphaSimR-2.0.0/AlphaSimR/R/mergePops.R | 392 AlphaSimR-2.0.0/AlphaSimR/R/misc.R | 1306 +- AlphaSimR-2.0.0/AlphaSimR/R/phenotypes.R | 729 - AlphaSimR-2.0.0/AlphaSimR/R/polyploids.R | 614 - AlphaSimR-2.0.0/AlphaSimR/R/popSummary.R | 1412 +- AlphaSimR-2.0.0/AlphaSimR/R/pullGeno.R | 2279 ++-- AlphaSimR-2.0.0/AlphaSimR/R/selection.R | 1140 +- AlphaSimR-2.0.0/AlphaSimR/R/writePlink.R | 278 AlphaSimR-2.0.0/AlphaSimR/R/writeRecords.R | 212 AlphaSimR-2.0.0/AlphaSimR/README.md | 62 AlphaSimR-2.0.0/AlphaSimR/build/partial.rdb |binary AlphaSimR-2.0.0/AlphaSimR/build/vignette.rds |binary AlphaSimR-2.0.0/AlphaSimR/inst/CITATION | 33 AlphaSimR-2.0.0/AlphaSimR/inst/REFERENCES.bib | 342 AlphaSimR-2.0.0/AlphaSimR/inst/doc/AlphaSimR.R |only AlphaSimR-2.0.0/AlphaSimR/inst/doc/AlphaSimR.Rmd |only AlphaSimR-2.0.0/AlphaSimR/inst/doc/AlphaSimR.html |only AlphaSimR-2.0.0/AlphaSimR/inst/doc/traits.Rmd | 372 AlphaSimR-2.0.0/AlphaSimR/inst/doc/traits.pdf |binary AlphaSimR-2.0.0/AlphaSimR/man/AlphaSimR-package.Rd | 101 AlphaSimR-2.0.0/AlphaSimR/man/HybridPop-class.Rd | 122 AlphaSimR-2.0.0/AlphaSimR/man/LociMap-class.Rd | 42 AlphaSimR-2.0.0/AlphaSimR/man/MapPop-class.Rd | 102 AlphaSimR-2.0.0/AlphaSimR/man/MultiPop-class.Rd | 112 AlphaSimR-2.0.0/AlphaSimR/man/NamedMapPop-class.Rd | 96 AlphaSimR-2.0.0/AlphaSimR/man/Pop-class.Rd | 182 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP.Rd | 132 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP2.Rd | 224 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUPMemUse.Rd | 56 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_D.Rd | 134 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_D2.Rd | 178 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_GCA.Rd | 136 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_GCA2.Rd | 176 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_SCA.Rd | 134 AlphaSimR-2.0.0/AlphaSimR/man/RRBLUP_SCA2.Rd | 184 AlphaSimR-2.0.0/AlphaSimR/man/RRsol-class.Rd | 52 AlphaSimR-2.0.0/AlphaSimR/man/RawPop-class.Rd | 122 AlphaSimR-2.0.0/AlphaSimR/man/SimParam.Rd | 3919 +++---- AlphaSimR-2.0.0/AlphaSimR/man/TraitA-class.Rd | 36 AlphaSimR-2.0.0/AlphaSimR/man/TraitA2-class.Rd | 34 AlphaSimR-2.0.0/AlphaSimR/man/TraitA2D-class.Rd | 32 AlphaSimR-2.0.0/AlphaSimR/man/TraitAD-class.Rd | 32 AlphaSimR-2.0.0/AlphaSimR/man/TraitADE-class.Rd | 32 AlphaSimR-2.0.0/AlphaSimR/man/TraitADEG-class.Rd | 40 AlphaSimR-2.0.0/AlphaSimR/man/TraitADG-class.Rd | 40 AlphaSimR-2.0.0/AlphaSimR/man/TraitAE-class.Rd | 32 AlphaSimR-2.0.0/AlphaSimR/man/TraitAEG-class.Rd | 40 AlphaSimR-2.0.0/AlphaSimR/man/TraitAG-class.Rd | 40 AlphaSimR-2.0.0/AlphaSimR/man/aa.Rd | 64 AlphaSimR-2.0.0/AlphaSimR/man/addError.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/addSegSite.Rd | 80 AlphaSimR-2.0.0/AlphaSimR/man/asCategorical.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/attrition.Rd | 74 AlphaSimR-2.0.0/AlphaSimR/man/bv.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/cChr.Rd | 54 AlphaSimR-2.0.0/AlphaSimR/man/calcGCA.Rd | 74 AlphaSimR-2.0.0/AlphaSimR/man/calcPheno.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/checkSexes.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/convertTraitsToNames.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/dd.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/dot-newPop.Rd | 109 AlphaSimR-2.0.0/AlphaSimR/man/doubleGenome.Rd | 80 AlphaSimR-2.0.0/AlphaSimR/man/ebv.Rd | 60 AlphaSimR-2.0.0/AlphaSimR/man/editGenome.Rd | 98 AlphaSimR-2.0.0/AlphaSimR/man/editGenomeTopQtl.Rd | 90 AlphaSimR-2.0.0/AlphaSimR/man/fastRRBLUP.Rd | 156 AlphaSimR-2.0.0/AlphaSimR/man/findLociMapSuperset.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/findQtlIndex.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/genParam.Rd | 134 AlphaSimR-2.0.0/AlphaSimR/man/genicVarA.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/genicVarAA.Rd | 64 AlphaSimR-2.0.0/AlphaSimR/man/genicVarD.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/genicVarG.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/getCandidates.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/getFam.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/getGenMap.Rd | 80 AlphaSimR-2.0.0/AlphaSimR/man/getLociNames.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/getNumThreads.Rd | 38 AlphaSimR-2.0.0/AlphaSimR/man/getPed.Rd | 66 AlphaSimR-2.0.0/AlphaSimR/man/getQtlMap.Rd | 88 AlphaSimR-2.0.0/AlphaSimR/man/getResponse.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/getSnpMap.Rd | 90 AlphaSimR-2.0.0/AlphaSimR/man/gv.Rd | 58 AlphaSimR-2.0.0/AlphaSimR/man/hybridCross.Rd | 102 AlphaSimR-2.0.0/AlphaSimR/man/importGenMap.Rd | 64 AlphaSimR-2.0.0/AlphaSimR/man/importHaplo.Rd | 124 AlphaSimR-2.0.0/AlphaSimR/man/importInbredGeno.Rd | 122 AlphaSimR-2.0.0/AlphaSimR/man/isFemale.Rd | 76 AlphaSimR-2.0.0/AlphaSimR/man/isPop.Rd | 56 AlphaSimR-2.0.0/AlphaSimR/man/makeCross.Rd | 84 AlphaSimR-2.0.0/AlphaSimR/man/makeCross2.Rd | 88 AlphaSimR-2.0.0/AlphaSimR/man/makeDH.Rd | 86 AlphaSimR-2.0.0/AlphaSimR/man/mapLoci.Rd | 48 AlphaSimR-2.0.0/AlphaSimR/man/meanEBV.Rd | 62 AlphaSimR-2.0.0/AlphaSimR/man/meanG.Rd | 58 AlphaSimR-2.0.0/AlphaSimR/man/meanP.Rd | 58 AlphaSimR-2.0.0/AlphaSimR/man/mergeGenome.Rd | 86 AlphaSimR-2.0.0/AlphaSimR/man/mergePops.Rd | 72 AlphaSimR-2.0.0/AlphaSimR/man/mutate.Rd | 94 AlphaSimR-2.0.0/AlphaSimR/man/nInd.Rd | 58 AlphaSimR-2.0.0/AlphaSimR/man/newEmptyPop.Rd | 68 AlphaSimR-2.0.0/AlphaSimR/man/newMapPop.Rd | 106 AlphaSimR-2.0.0/AlphaSimR/man/newMultiPop.Rd | 68 AlphaSimR-2.0.0/AlphaSimR/man/newPop.Rd | 110 AlphaSimR-2.0.0/AlphaSimR/man/pedigreeCross.Rd | 158 AlphaSimR-2.0.0/AlphaSimR/man/pheno.Rd | 58 AlphaSimR-2.0.0/AlphaSimR/man/popVar.Rd | 40 AlphaSimR-2.0.0/AlphaSimR/man/pullIbdHaplo.Rd | 82 AlphaSimR-2.0.0/AlphaSimR/man/pullMarkerGeno.Rd | 90 AlphaSimR-2.0.0/AlphaSimR/man/pullMarkerHaplo.Rd | 100 AlphaSimR-2.0.0/AlphaSimR/man/pullQtlGeno.Rd | 84 AlphaSimR-2.0.0/AlphaSimR/man/pullQtlHaplo.Rd | 106 AlphaSimR-2.0.0/AlphaSimR/man/pullSegSiteGeno.Rd | 80 AlphaSimR-2.0.0/AlphaSimR/man/pullSegSiteHaplo.Rd | 102 AlphaSimR-2.0.0/AlphaSimR/man/pullSnpGeno.Rd | 84 AlphaSimR-2.0.0/AlphaSimR/man/pullSnpHaplo.Rd | 106 AlphaSimR-2.0.0/AlphaSimR/man/quickHaplo.Rd | 70 AlphaSimR-2.0.0/AlphaSimR/man/randCross.Rd | 108 AlphaSimR-2.0.0/AlphaSimR/man/randCross2.Rd | 126 AlphaSimR-2.0.0/AlphaSimR/man/reduceGenome.Rd | 110 AlphaSimR-2.0.0/AlphaSimR/man/resetPop.Rd | 72 AlphaSimR-2.0.0/AlphaSimR/man/rnormWithSeed.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/runMacs.Rd | 160 AlphaSimR-2.0.0/AlphaSimR/man/runMacs2.Rd | 190 AlphaSimR-2.0.0/AlphaSimR/man/sampAddEff.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/sampDomEff.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/sampEpiEff.Rd |only AlphaSimR-2.0.0/AlphaSimR/man/sampleHaplo.Rd | 66 AlphaSimR-2.0.0/AlphaSimR/man/selIndex.Rd | 92 AlphaSimR-2.0.0/AlphaSimR/man/selInt.Rd 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AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-hybrids.R | 132 AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-importData.R | 96 AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-misc.R | 120 AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-phenotypes.R |only AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-selection.R | 74 AlphaSimR-2.0.0/AlphaSimR/tests/testthat/test-statistics.R | 60 AlphaSimR-2.0.0/AlphaSimR/vignettes/AlphaSimR.Rmd |only AlphaSimR-2.0.0/AlphaSimR/vignettes/AlphaSimR.bib | 288 AlphaSimR-2.0.0/AlphaSimR/vignettes/articles/GeneticRecombination.Rmd |only AlphaSimR-2.0.0/AlphaSimR/vignettes/articles/Genome.Rmd | 225 AlphaSimR-2.0.0/AlphaSimR/vignettes/articles/ImportRealData.Rmd |only AlphaSimR-2.0.0/AlphaSimR/vignettes/articles/SimulatePlantBreedingProgram.Rmd |only AlphaSimR-2.0.0/AlphaSimR/vignettes/articles/ToDo |only AlphaSimR-2.0.0/AlphaSimR/vignettes/traits.Rmd | 372 211 files changed, 23201 insertions(+), 22186 deletions(-)
Title: Truncated Multivariate Normal and Student t Distribution
Description: Random number generation for the truncated multivariate normal and Student t distribution.
Computes probabilities, quantiles and densities,
including one-dimensional and bivariate marginal densities. Computes first and second moments (i.e. mean and covariance matrix) for the double-truncated multinormal case.
Author: Stefan Wilhelm [aut, cre],
Manjunath B G [aut]
Maintainer: Stefan Wilhelm <wilhelm@financial.com>
Diff between tmvtnorm versions 1.6 dated 2023-12-05 and 1.7 dated 2025-09-01
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ NAMESPACE | 2 +- NEWS | 3 +++ build/vignette.rds |binary inst/doc/GibbsSampler.pdf |binary man/gmm.tmvnorm.Rd | 2 +- src/init.c |only 8 files changed, 17 insertions(+), 13 deletions(-)
Title: Advanced Response Surface Analysis
Description: Provides tools for response surface analysis, using a comparative framework that identifies best-fitting solutions across 37 families of polynomials. Many of these tools are based upon and extend the 'RSA' package, by testing a larger scope of polynomials (+27 families), more diverse response surface probing techniques (+acceleration points), more plots (+line of congruence, +line of incongruence, both with extrema), and other useful functions for exporting results.
Author: Fernando Nunez-Regueiro [aut, cre] ,
Jacques Juhel [aut] ,
Felix Schoenbrodt [ctb] ,
Sarah Humberg [ctb]
Maintainer: Fernando Nunez-Regueiro <fernando.nr.france@gmail.com>
Diff between RSAtools versions 0.1.1 dated 2024-06-19 and 0.1.2 dated 2025-09-01
DESCRIPTION | 18 +++++------ MD5 | 43 ++++++++++++++------------ NAMESPACE | 1 NEWS |only R/RSAmodel.R | 4 +- R/best.rsa.R | 77 ++++++++++++++++++++++++++++++++++-------------- R/best.rsa2.R | 37 ++++++++++++++++------- R/exportRSA.bootstrap.R | 1 R/exportRSA.fit.R | 10 +++--- R/ident.ext.R | 1 R/internal.rsa.R | 2 - R/plotting.ext.R | 46 ++++++++++++++++------------ R/plotting.rsa.R | 1 R/plotting.rsaSIM.R |only R/sim_NSfit.R | 8 ++-- data/RSA_step1.rda |binary inst/CITATION | 2 - man/RSAmodel.Rd | 4 +- man/best.rsa.Rd | 4 +- man/best.rsa2.Rd | 2 - man/exportRSA.fit.Rd | 4 +- man/plotting.ext.Rd | 15 +++++++-- man/plotting.rsaSIM.Rd |only man/sim_NSfit.Rd | 6 +-- 24 files changed, 177 insertions(+), 109 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 version 6
and up or NodeJS when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 6.0.6 dated 2025-08-18 and 7.0.0 dated 2025-09-01
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 18 +++++++++--------- NEWS | 6 ++++++ build/partial.rdb |binary configure | 38 ++++++++++++++++++-------------------- inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 6 +++--- src/Makevars.win | 4 ++-- tools/winlibs.R | 6 +++--- 10 files changed, 47 insertions(+), 43 deletions(-)
Title: A Fast Tool for Single-Cell Spatially Variable Genes
Identifications on Large-Scale Data
Description: Identifying spatially variable genes is critical in linking molecular cell functions
with tissue phenotypes. This package utilizes a granularity-based dimension-agnostic tool,
single-cell big-small patch (scBSP), implementing sparse matrix operation and KD tree
methods for distance calculation, for the identification of spatially variable genes on
large-scale data. The detailed description of this method is available at Wang, J.
and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).
Author: Jinpu Li [aut, cre] ,
Yiqing Wang [aut]
Maintainer: Jinpu Li <castle.lee.f@gmail.com>
Diff between scBSP versions 1.0.0 dated 2024-05-02 and 1.1.0 dated 2025-09-01
DESCRIPTION | 12 ++++++------ MD5 | 9 ++++++--- NAMESPACE | 4 ++++ R/CombinePvalues.R |only README.md |only inst/doc/manual.pdf |binary man/CombinePvalues.Rd |only 7 files changed, 16 insertions(+), 9 deletions(-)
Title: 'Rcpp' Integration for the 'mlpack' Library
Description: A fast, flexible machine learning library, written in C++, that
aims to provide fast, extensible implementations of cutting-edge
machine learning algorithms. See also Curtin et al. (2023)
<doi:10.21105/joss.05026>.
Author: Yashwant Singh Parihar [aut, ctb, cph],
Ryan Curtin [aut, ctb, cph, cre],
Dirk Eddelbuettel [aut, ctb, cph],
James Balamuta [aut, ctb, cph],
Bill March [ctb, cph],
Dongryeol Lee [ctb, cph],
Nishant Mehta [ctb, cph],
Parikshit Ram [ctb, cph],
James Cl [...truncated...]
Maintainer: Ryan Curtin <ryan@ratml.org>
Diff between mlpack versions 4.6.2 dated 2025-05-22 and 4.6.3 dated 2025-09-01
DESCRIPTION | 8 +++--- MD5 | 8 +++--- inst/include/mlpack.h | 58 ++++++++++---------------------------------------- src/Makevars | 4 +-- src/rcpp_mlpack.h | 29 ++++++------------------- 5 files changed, 30 insertions(+), 77 deletions(-)
Title: Reproducible Input–Output Economics Analysis, Economic and
Environmental Impact Assessment with Empirical Data
Description: Pre-processing and basic analytical tasks for working with
Eurostat's symmetric input–output tables, and basic input–output
economics calculations. Part of rOpenGov <https://ropengov.github.io/>
for open source open government initiatives.
Author: Daniel Antal [aut, cre] ,
Kasia Kulma [ctb] ,
Pyry Kantanen [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between iotables versions 0.9.3 dated 2024-01-08 and 0.9.4 dated 2025-09-01
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iotables-0.9.4/iotables/inst/doc/environmental_impact.R | 91 iotables-0.9.4/iotables/inst/doc/environmental_impact.Rmd | 89 iotables-0.9.4/iotables/inst/doc/environmental_impact.html | 169 iotables-0.9.4/iotables/inst/doc/intro.R | 201 - iotables-0.9.4/iotables/inst/doc/intro.Rmd | 220 - iotables-0.9.4/iotables/inst/doc/intro.html | 486 +- iotables-0.9.4/iotables/inst/doc/terminology.R |only iotables-0.9.4/iotables/inst/doc/terminology.Rmd |only iotables-0.9.4/iotables/inst/doc/terminology.html |only iotables-0.9.4/iotables/inst/doc/united_kingdom_2010.R | 305 - iotables-0.9.4/iotables/inst/doc/united_kingdom_2010.Rmd | 307 - iotables-0.9.4/iotables/inst/doc/united_kingdom_2010.html | 402 +- iotables-0.9.4/iotables/inst/doc/working_with_eurostat.R | 485 +- iotables-0.9.4/iotables/inst/doc/working_with_eurostat.Rmd | 447 +- iotables-0.9.4/iotables/inst/doc/working_with_eurostat.html | 1880 +++------- iotables-0.9.4/iotables/man/airpol_get.Rd | 147 iotables-0.9.4/iotables/man/backward_linkages.Rd | 43 iotables-0.9.4/iotables/man/chars_collapse.Rd | 45 iotables-0.9.4/iotables/man/check_digits.Rd | 3 iotables-0.9.4/iotables/man/coefficient_matrix_create.Rd | 81 iotables-0.9.4/iotables/man/conforming_vector_create.Rd | 27 iotables-0.9.4/iotables/man/create_knitr_table.Rd | 70 iotables-0.9.4/iotables/man/croatia_2010_1700.Rd | 42 iotables-0.9.4/iotables/man/croatia_2010_1800.Rd | 47 iotables-0.9.4/iotables/man/croatia_2010_1900.Rd | 46 iotables-0.9.4/iotables/man/croatia_employment_2013.Rd | 15 iotables-0.9.4/iotables/man/croatia_employment_aggregation.Rd | 21 iotables-0.9.4/iotables/man/direct_effects_create.Rd | 30 iotables-0.9.4/iotables/man/employment_get.Rd | 78 iotables-0.9.4/iotables/man/employment_metadata.Rd | 36 iotables-0.9.4/iotables/man/empty_remove.Rd | 48 iotables-0.9.4/iotables/man/equation_solve.Rd | 48 iotables-0.9.4/iotables/man/forward_linkages.Rd | 43 iotables-0.9.4/iotables/man/germany_1995.Rd | 109 iotables-0.9.4/iotables/man/germany_airpol.Rd | 78 iotables-0.9.4/iotables/man/getdata.Rd | 32 iotables-0.9.4/iotables/man/ghosh_inverse_create.Rd | 98 iotables-0.9.4/iotables/man/household_column_find.Rd | 56 iotables-0.9.4/iotables/man/household_column_get.Rd | 16 iotables-0.9.4/iotables/man/indirect_effects_create.Rd | 43 iotables-0.9.4/iotables/man/input_coefficient_matrix_create.Rd | 63 iotables-0.9.4/iotables/man/input_flow_get.Rd | 54 iotables-0.9.4/iotables/man/input_indicator_create.Rd | 62 iotables-0.9.4/iotables/man/input_multipliers_create.Rd | 27 iotables-0.9.4/iotables/man/iotable_get.Rd | 123 iotables-0.9.4/iotables/man/iotable_year_get.Rd | 104 iotables-0.9.4/iotables/man/iotables-package.Rd | 86 iotables-0.9.4/iotables/man/iotables_download.Rd | 80 iotables-0.9.4/iotables/man/iotables_metadata_get.Rd | 65 iotables-0.9.4/iotables/man/iotables_read_tempdir.Rd | 32 iotables-0.9.4/iotables/man/is_key_column_present.Rd | 45 iotables-0.9.4/iotables/man/key_column_create.Rd | 84 iotables-0.9.4/iotables/man/leontief_inverse_create.Rd | 105 iotables-0.9.4/iotables/man/leontief_matrix_create.Rd | 93 iotables-0.9.4/iotables/man/matrix_round.Rd | 25 iotables-0.9.4/iotables/man/metadata.Rd | 39 iotables-0.9.4/iotables/man/metadata_uk_2010.Rd | 42 iotables-0.9.4/iotables/man/multiplier_create.Rd | 82 iotables-0.9.4/iotables/man/netherlands_2000.Rd |only iotables-0.9.4/iotables/man/non_zero_columns_find.Rd | 42 iotables-0.9.4/iotables/man/output_coefficient_matrix_create.Rd | 67 iotables-0.9.4/iotables/man/output_get.Rd | 33 iotables-0.9.4/iotables/man/output_multiplier_create.Rd | 41 iotables-0.9.4/iotables/man/pipe.Rd | 2 iotables-0.9.4/iotables/man/primary_input_get.Rd | 49 iotables-0.9.4/iotables/man/primary_inputs.Rd | 8 iotables-0.9.4/iotables/man/quadrant_separator_find.Rd | 2 iotables-0.9.4/iotables/man/round_table.Rd | 45 iotables-0.9.4/iotables/man/rows_add.Rd | 139 iotables-0.9.4/iotables/man/supplementary_add.Rd | 85 iotables-0.9.4/iotables/man/tempdir_data.Rd | 42 iotables-0.9.4/iotables/man/total_tax_add.Rd | 62 iotables-0.9.4/iotables/man/uk_2010_data.Rd | 41 iotables-0.9.4/iotables/man/uk_2010_get.Rd | 6 iotables-0.9.4/iotables/man/uk_2010_results_get.Rd | 8 iotables-0.9.4/iotables/man/uk_test_results.Rd | 64 iotables-0.9.4/iotables/man/validate_source.Rd | 11 iotables-0.9.4/iotables/man/vector_transpose_longer.Rd | 157 iotables-0.9.4/iotables/man/vector_transpose_wider.Rd | 125 iotables-0.9.4/iotables/tests/testthat/test-airpol_get.R |only iotables-0.9.4/iotables/tests/testthat/test-backward_linkages.R | 65 iotables-0.9.4/iotables/tests/testthat/test-check_digits.R |only iotables-0.9.4/iotables/tests/testthat/test-coefficient_matrix_create.R | 50 iotables-0.9.4/iotables/tests/testthat/test-conforming_vector_create.R | 30 iotables-0.9.4/iotables/tests/testthat/test-create_knitr_table.R |only iotables-0.9.4/iotables/tests/testthat/test-data_netherlands_2000.R |only iotables-0.9.4/iotables/tests/testthat/test-direct_effects_create.R | 23 iotables-0.9.4/iotables/tests/testthat/test-employment_get.R |only iotables-0.9.4/iotables/tests/testthat/test-empty_remove.R | 77 iotables-0.9.4/iotables/tests/testthat/test-equation_solve.R |only iotables-0.9.4/iotables/tests/testthat/test-forward_linkages.R | 52 iotables-0.9.4/iotables/tests/testthat/test-germany_1995.R | 11 iotables-0.9.4/iotables/tests/testthat/test-get_saved_table.R | 32 iotables-0.9.4/iotables/tests/testthat/test-ghosh_inverse_create.R | 43 iotables-0.9.4/iotables/tests/testthat/test-household_column_find.R |only iotables-0.9.4/iotables/tests/testthat/test-household_column_get.R | 27 iotables-0.9.4/iotables/tests/testthat/test-indirect_effects_create.R | 26 iotables-0.9.4/iotables/tests/testthat/test-input_coefficient_matrix.R | 39 iotables-0.9.4/iotables/tests/testthat/test-input_coefficient_matrix_create.R |only iotables-0.9.4/iotables/tests/testthat/test-input_flow_get.R | 35 iotables-0.9.4/iotables/tests/testthat/test-input_indicator_create.R | 110 iotables-0.9.4/iotables/tests/testthat/test-input_multipliers_create.R | 27 iotables-0.9.4/iotables/tests/testthat/test-iotable_create.R |only iotables-0.9.4/iotables/tests/testthat/test-iotable_get.R | 115 iotables-0.9.4/iotables/tests/testthat/test-iotable_year_get.R | 28 iotables-0.9.4/iotables/tests/testthat/test-iotables_download.R | 56 iotables-0.9.4/iotables/tests/testthat/test-iotables_metadata_get.R |only iotables-0.9.4/iotables/tests/testthat/test-leontief_inverse_create.R |only iotables-0.9.4/iotables/tests/testthat/test-leontief_matrix_create.R | 122 iotables-0.9.4/iotables/tests/testthat/test-matrix_round.R | 26 iotables-0.9.4/iotables/tests/testthat/test-multiplier_create.R | 174 iotables-0.9.4/iotables/tests/testthat/test-output_coefficient_matrix_create.R | 82 iotables-0.9.4/iotables/tests/testthat/test-output_get.R | 31 iotables-0.9.4/iotables/tests/testthat/test-output_multiplier_create.R |only iotables-0.9.4/iotables/tests/testthat/test-output_multipliers.R | 20 iotables-0.9.4/iotables/tests/testthat/test-primary_input_get.R | 48 iotables-0.9.4/iotables/tests/testthat/test-quadrant_separator_find.R |only iotables-0.9.4/iotables/tests/testthat/test-round_table.R |only iotables-0.9.4/iotables/tests/testthat/test-rows_add.R | 62 iotables-0.9.4/iotables/tests/testthat/test-supplementary_add.R | 91 iotables-0.9.4/iotables/tests/testthat/test-total_tax_add.R | 62 iotables-0.9.4/iotables/tests/testthat/test-utils.R | 59 iotables-0.9.4/iotables/tests/testthat/test-vector_transpose.R | 138 iotables-0.9.4/iotables/vignettes/environmental_impact.Rmd | 89 iotables-0.9.4/iotables/vignettes/intro.Rmd | 220 - iotables-0.9.4/iotables/vignettes/terminology.Rmd |only iotables-0.9.4/iotables/vignettes/united_kingdom_2010.Rmd | 307 - iotables-0.9.4/iotables/vignettes/working_with_eurostat.Rmd | 447 +- 204 files changed, 10843 insertions(+), 8856 deletions(-)
Title: Data Package for the 2016 United States Federal Elections
Description: Easily analyze relational data from the United States 2016 federal
election cycle as reported by the Federal Election Commission.
This package contains data about candidates, committees, and a
variety of different financial expenditures. Data is from <https://www.fec.gov/data/browse-data/?tab=bulk-data>.
Author: Marium Tapal [aut, cre] ,
Rana Gahwagy [aut],
Irene Ryan [aut],
Benjamin S. Baumer [aut]
Maintainer: Marium Tapal <mariumtapal@gmail.com>
Diff between fec16 versions 0.1.4 dated 2023-08-09 and 0.1.5 dated 2025-09-01
DESCRIPTION | 14 ++++++++------ MD5 | 14 +++++++------- build/vignette.rds |binary inst/doc/fec_vignette.R | 32 ++++++++++++++++---------------- inst/doc/fec_vignette.Rmd | 2 +- inst/doc/fec_vignette.html | 12 ++++++------ man/fec16.Rd | 20 ++++++++++++++++++++ vignettes/fec_vignette.Rmd | 2 +- 8 files changed, 59 insertions(+), 37 deletions(-)
Title: Dimension Reduction with Dynamic CUR
Description: Dynamic CUR (dCUR) boosts the CUR decomposition (Mahoney MW., Drineas P. (2009) <doi:10.1073/pnas.0803205106>) varying the k, the number of columns and rows used, and its final purposes to help find the stage, which minimizes the relative error to reduce matrix dimension.
The goal of CUR Decomposition is to give a better interpretation of the matrix decomposition employing proper variable selection in the data matrix, in a way that yields a simplified structure. Its origins come from analysis in genetics.
The goal of this package is to show an alternative to variable selection (columns) or individuals (rows). The idea proposed consists of adjusting the probability distributions to the leverage scores and selecting the best columns and rows that minimize the reconstruction error of the matrix approximation ||A-CUR||. It also includes a method that recalibrates the relative importance of the leverage scores according to an external variable of the user's interest.
Author: Cesar Gamboa-Sanabria [aut, mdc, cph, cre] ,
Stefani Matarrita-Munoz [aut] ,
Katherine Barquero-Mejias [aut] ,
Greibin Villegas-Barahona [aut] ,
Mercedes Sanchez-Barba [aqt] ,
Maria Purificacion Galindo-Villardon [aqt]
Maintainer: Cesar Gamboa-Sanabria <info@cesargamboasanabria.com>
Diff between dCUR versions 1.0.1 dated 2023-10-18 and 1.0.2 dated 2025-09-01
DESCRIPTION | 36 +++++++++++++++++++++++++----------- MD5 | 33 +++++++++++++++++---------------- R/CUR.R | 2 +- R/dCUR.R | 6 +++--- R/mixture_plots.R | 4 ++-- R/optimal_stage.R | 4 ++-- R/package_info.R | 8 +------- R/relevant_variables_plot.R | 4 ++-- R/var_exp.R | 4 ++-- README.md | 4 ++-- build/partial.rdb |binary man/CUR.Rd | 2 +- man/dCUR-package.Rd |only man/dCUR.Rd | 14 ++++---------- man/mixture_plots.Rd | 4 ++-- man/optimal_stage.Rd | 4 ++-- man/relevant_variables_plot.Rd | 4 ++-- man/var_exp.Rd | 4 ++-- 18 files changed, 70 insertions(+), 67 deletions(-)
Title: Making Census Data More Usable
Description: Creates a common framework for organizing, naming, and gathering
population, age, race, and ethnicity data from the Census Bureau. Accesses
the API <https://www.census.gov/data/developers/data-sets.html>. Provides
tools for adding information to existing data to line up with Census data.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between censable versions 0.0.5 dated 2022-11-19 and 0.0.8 dated 2025-09-01
censable-0.0.5/censable/R/utils-pipe.R |only censable-0.0.5/censable/R/utils-tidy-eval.R |only censable-0.0.5/censable/man/pipe.Rd |only censable-0.0.5/censable/man/tidyeval.Rd |only censable-0.0.8/censable/DESCRIPTION | 23 censable-0.0.8/censable/MD5 | 110 +-- censable-0.0.8/censable/NAMESPACE | 12 censable-0.0.8/censable/NEWS.md | 20 censable-0.0.8/censable/R/api.R | 74 +- censable-0.0.8/censable/R/build_acs.R | 360 +++++----- censable-0.0.8/censable/R/build_dec.R | 431 ++++++------ censable-0.0.8/censable/R/collapse.R | 20 censable-0.0.8/censable/R/constants.R | 148 ++-- censable-0.0.8/censable/R/geoid.R | 406 +++++------ censable-0.0.8/censable/R/helpers.R | 30 censable-0.0.8/censable/R/join.R | 608 ++++++++--------- censable-0.0.8/censable/R/match.R | 52 - censable-0.0.8/censable/R/recode.R | 52 - censable-0.0.8/censable/README.md | 2 censable-0.0.8/censable/man/breakdown_geoid.Rd | 2 censable-0.0.8/censable/man/build_acs.Rd | 10 censable-0.0.8/censable/man/build_dec.Rd | 8 censable-0.0.8/censable/man/collapse4.Rd | 2 censable-0.0.8/censable/man/collapse4_pop.Rd | 2 censable-0.0.8/censable/man/collapse4_vap.Rd | 2 censable-0.0.8/censable/man/collapse5.Rd | 2 censable-0.0.8/censable/man/collapse5_pop.Rd | 2 censable-0.0.8/censable/man/collapse5_vap.Rd | 2 censable-0.0.8/censable/man/construct_geoid.Rd | 6 censable-0.0.8/censable/man/custom_geoid.Rd | 2 censable-0.0.8/censable/man/join_abb_ansi.Rd | 2 censable-0.0.8/censable/man/join_abb_fips.Rd | 2 censable-0.0.8/censable/man/join_abb_name.Rd | 2 censable-0.0.8/censable/man/join_ansi_abb.Rd | 2 censable-0.0.8/censable/man/join_ansi_fips.Rd | 2 censable-0.0.8/censable/man/join_ansi_name.Rd | 2 censable-0.0.8/censable/man/join_fips_abb.Rd | 2 censable-0.0.8/censable/man/join_fips_ansi.Rd | 2 censable-0.0.8/censable/man/join_fips_name.Rd | 2 censable-0.0.8/censable/man/join_name_abb.Rd | 2 censable-0.0.8/censable/man/join_name_ansi.Rd | 2 censable-0.0.8/censable/man/join_name_fips.Rd | 2 censable-0.0.8/censable/man/recode_abb_ansi.Rd | 2 censable-0.0.8/censable/man/recode_abb_fips.Rd | 2 censable-0.0.8/censable/man/recode_abb_name.Rd | 2 censable-0.0.8/censable/man/recode_ansi_abb.Rd | 2 censable-0.0.8/censable/man/recode_ansi_fips.Rd | 2 censable-0.0.8/censable/man/recode_ansi_name.Rd | 2 censable-0.0.8/censable/man/recode_fips_abb.Rd | 2 censable-0.0.8/censable/man/recode_fips_ansi.Rd | 2 censable-0.0.8/censable/man/recode_fips_name.Rd | 2 censable-0.0.8/censable/man/recode_name_abb.Rd | 2 censable-0.0.8/censable/man/recode_name_ansi.Rd | 2 censable-0.0.8/censable/man/recode_name_fips.Rd | 2 censable-0.0.8/censable/tests/testthat/test-collapse.R | 12 censable-0.0.8/censable/tests/testthat/test-geoid.R | 6 censable-0.0.8/censable/tests/testthat/test-join.R | 24 censable-0.0.8/censable/tests/testthat/test-recode.R | 24 58 files changed, 1253 insertions(+), 1249 deletions(-)
Title: Applied Techniques to Demographic and Time Series Analysis
Description: The use of overparameterization is proposed with combinatorial analysis to test a broader spectrum of possible ARIMA models.
In the selection of ARIMA models, the most traditional methods such as correlograms or others, do not usually cover many alternatives to define the number of coefficients to be estimated in the model, which represents an estimation method that is not the best.
The popstudy package contains several tools for statistical analysis in demography and time series based in Shryock research (Shryock et. al. (1980) <https://books.google.co.cr/books?id=8Oo6AQAAMAAJ>).
Author: Cesar Gamboa-Sanabria [aut, mdc, cph, cre]
Maintainer: Cesar Gamboa-Sanabria <info@cesargamboasanabria.com>
Diff between popstudy versions 1.0.1 dated 2023-10-17 and 1.0.2 dated 2025-09-01
DESCRIPTION | 12 +++--- MD5 | 78 ++++++++++++++++++++--------------------- R/Beers.R | 2 - R/El_Badry.R | 4 +- R/Lexis.R | 4 +- R/Lifetable.R | 8 ++-- R/Moultrie.R | 4 +- R/Sprague.R | 2 - R/TFR_projection.R | 4 +- R/anonymous.R | 2 - R/descriptive_plot.R | 2 - R/growth_exp.R | 2 - R/growth_linear.R | 2 - R/growth_logistic.R | 2 - R/karup_king.R | 2 - R/mortality_projection.R | 4 +- R/netmigration_projection.R | 2 - R/op.arima.R | 6 +-- R/popstudy.R | 1 R/population_projection.R | 14 +++---- README.md | 4 +- build/partial.rdb |binary man/Beers.Rd | 2 - man/El_Badry.Rd | 4 +- man/Lexis.Rd | 4 +- man/Lifetable.Rd | 8 ++-- man/Moultrie.Rd | 4 +- man/Sprague.Rd | 2 - man/TFR_projection.Rd | 4 +- man/anonymous.Rd | 2 - man/descriptive_plot.Rd | 2 - man/growth_exp.Rd | 2 - man/growth_linear.Rd | 2 - man/growth_logistic.Rd | 2 - man/karup_king.Rd | 2 - man/mortality_projection.Rd | 4 +- man/netmigration_projection.Rd | 2 - man/op.arima.Rd | 6 +-- man/popstudy.Rd | 1 man/population_projection.Rd | 14 +++---- 40 files changed, 113 insertions(+), 115 deletions(-)
Title: Operations to Ease Data Analyses Specific to Nigeria
Description: A set of convenience functions as well as geographical/political
data about Nigeria, aimed at simplifying work with data and information that
are specific to the country.
Author: Victor Ordu [aut, cre] ,
Laura DeCicco [ctb],
Emily Riederer [rev],
Margaret Siple [rev],
Cagri Alican [rev]
Maintainer: Victor Ordu <victorordu@outlook.com>
Diff between naijR versions 0.6.2 dated 2025-04-09 and 0.6.3 dated 2025-09-01
naijR-0.6.2/naijR/man/naijR.Rd |only naijR-0.6.3/naijR/DESCRIPTION | 28 ++++++------ naijR-0.6.3/naijR/MD5 | 24 +++++----- naijR-0.6.3/naijR/NEWS.md | 4 + naijR-0.6.3/naijR/R/fixreg.R | 2 naijR-0.6.3/naijR/R/map.R | 1 naijR-0.6.3/naijR/R/mapint.R | 1 naijR-0.6.3/naijR/R/naijR-package.R | 5 -- naijR-0.6.3/naijR/R/regions.R | 54 +++++++++++++++++------- naijR-0.6.3/naijR/R/regionsint.R | 19 -------- naijR-0.6.3/naijR/build/vignette.rds |binary naijR-0.6.3/naijR/inst/doc/nigeria-maps.html | 24 +++++----- naijR-0.6.3/naijR/man/naijR-package.Rd |only naijR-0.6.3/naijR/tests/testthat/test-regions.R | 14 ++++-- 14 files changed, 93 insertions(+), 83 deletions(-)
Title: 'Global Data Lab' R API
Description: Retrieve datasets from the 'Global Data Lab' website <https://globaldatalab.org>
directly into R data frames. Functions are provided to reference available options
(indicators, levels, countries, regions) as well.
Author: Global Data Lab [cph],
Aaron van Geffen [aut, cre]
Maintainer: Aaron van Geffen <aaron.vangeffen@ru.nl>
Diff between gdldata versions 0.1 dated 2023-09-20 and 0.2 dated 2025-09-01
DESCRIPTION | 8 ++++---- MD5 | 19 +++++++++++-------- NAMESPACE | 2 ++ NEWS.md |only R/gdl_request.R | 5 ++++- R/gdl_session.R | 5 +++-- R/reference_funcs.R | 34 +++++++++++++++++++++++++++++++--- R/setter_funcs.R | 34 ++++++++++++++++++++++++++++++++++ README.md | 13 +++++++------ man/gdl_datasets.Rd |only man/gdl_indicators.Rd | 5 ++--- man/set_transposed.Rd |only 12 files changed, 98 insertions(+), 27 deletions(-)
Title: Apportion Seats
Description: Convert populations into integer number of seats for legislative
bodies. Implements apportionment methods used historically and currently in the
United States for reapportionment after the Census, as described in
<https://www.census.gov/history/www/reference/apportionment/methods_of_apportionment.html>.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between apportion versions 0.0.1 dated 2023-02-16 and 0.0.2 dated 2025-09-01
DESCRIPTION | 14 +++++++------- MD5 | 2 +- 2 files changed, 8 insertions(+), 8 deletions(-)
Title: Weighted Cumulative Exposure Models
Description: A flexible method for modeling cumulative effects of time-varying exposures, weighted according to their relative proximity in time, and represented by time-dependent covariates. The current implementation estimates the weight function in the Cox proportional hazards model. The function that assigns weights to doses taken in the past is estimated using cubic regression splines.
Author: Marie-Pierre Sylvestre [aut, cre] ,
Marie-Eve Beauchamp [ctb],
Ryan Patrick Kyle [ctb],
Michal Abrahamowicz [ctb]
Maintainer: Marie-Pierre Sylvestre <marie-pierre.sylvestre@umontreal.ca>
Diff between WCE versions 1.0.3 dated 2024-02-15 and 1.0.4 dated 2025-09-01
DESCRIPTION | 13 ++++++------- MD5 | 6 +++--- R/WCE.R | 2 +- man/WCE.Rd | 2 +- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Time Varying GARCH Modelling
Description: Simulation, estimation and inference for univariate and multivariate TV(s)-GARCH(p,q,r)-X models, where s indicates the number and shape of the transition functions, p is the ARCH order, q is the GARCH order, r is the asymmetry order, and 'X' indicates that covariates can be included; see Campos-Martins and Sucarrat (2024) <doi:10.18637/jss.v108.i09>. In the multivariate case, variances are estimated equation by equation and dynamic conditional correlations are allowed. The TV long-term component of the variance as in the multiplicative TV-GARCH model of Amado and Terasvirta (2013) <doi:10.1016/j.jeconom.2013.03.006> introduces non-stationarity whereas the GARCH-X short-term component describes conditional heteroscedasticity. Maximisation by parts leads to consistent and asymptotically normal estimates.
Author: Susana Campos-Martins [aut, cre],
Genaro Sucarrat [ctb]
Maintainer: Susana Campos-Martins <scmartins@ucp.pt>
Diff between tvgarch versions 2.4.2 dated 2024-04-04 and 2.4.3 dated 2025-09-01
DESCRIPTION | 18 +++++++++++++----- MD5 | 28 ++++++++++++++-------------- NEWS | 6 ++++++ R/tvgarch-internal.R | 2 +- man/coef.mtvgarch.Rd | 8 ++++---- man/coef.tvgarch.Rd | 6 +++--- man/coef.tvgarchTest.Rd | 6 +++--- man/dccObj.Rd | 4 +++- man/mtvgarch.Rd | 4 ++-- man/mtvgarchSim.Rd | 6 +++--- man/tvgarch-package.Rd | 4 ++-- man/tvgarch.Rd | 4 ++-- man/tvgarchObj.Rd | 14 ++++++++------ man/tvgarchSim.Rd | 6 +++--- man/tvgarchTest.Rd | 4 ++-- 15 files changed, 69 insertions(+), 51 deletions(-)
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Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.4.0 dated 2025-06-12 and 0.5.0 dated 2025-09-01
DESCRIPTION | 13 +- MD5 | 77 ++++++++------- NAMESPACE | 2 NEWS.md | 24 +--- R/mockCdmFromTables.R | 45 +++++++- R/mockCdmReference.R | 15 +- R/mockDatasets.R | 74 +++++++++++++- R/mockVocabulary.R | 15 ++ R/mockVocabularySet.R |only R/omock-package.R | 5 R/sysdata.rda |binary README.md | 12 +- data/mockDatasets.rda |binary inst/doc/a01_Creating_synthetic_clinical_tables.html | 14 +- inst/doc/a03_Creating_a_synthetic_vocabulary.R | 36 ++++++- inst/doc/a03_Creating_a_synthetic_vocabulary.Rmd | 51 +++++++++ inst/doc/a03_Creating_a_synthetic_vocabulary.html | 97 +++++++++++++++++-- man/downloadMockDataset.Rd | 2 man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/isMockDatasetDownloaded.Rd | 2 man/mockCdmFromDataset.Rd | 10 + man/mockCdmFromTables.Rd | 16 ++- man/mockCdmReference.Rd | 21 ++-- man/mockCohort.Rd | 8 - man/mockConcepts.Rd | 8 - man/mockConditionOccurrence.Rd | 16 +-- man/mockDatasets.Rd | 14 +- man/mockDeath.Rd | 10 - man/mockDrugExposure.Rd | 8 - man/mockMeasurement.Rd | 8 - man/mockObservation.Rd | 8 - man/mockObservationPeriod.Rd | 6 - man/mockPerson.Rd | 10 - man/mockProcedureOccurrence.Rd | 16 +-- man/mockVocabularySet.Rd |only man/mockVocabularyTables.Rd | 18 ++- tests/testthat/test-mockCdmFromTables.R | 70 ++++++++++++- tests/testthat/test-mockDatasets.R | 4 tests/testthat/test-mockVocabularySet.R |only vignettes/a03_Creating_a_synthetic_vocabulary.Rmd | 51 +++++++++ 43 files changed, 597 insertions(+), 189 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ.
NNG is a socket library for reliable, high-performance messaging over
in-process, IPC, TCP, WebSocket and secure TLS transports. Implements
'Scalability Protocols', a standard for common communications patterns
including publish/subscribe, request/reply and service discovery. As
its own threaded concurrency framework, provides a toolkit for
asynchronous programming and distributed computing. Intuitive 'aio'
objects resolve automatically when asynchronous operations complete,
and synchronisation primitives allow R to wait upon events signalled
by concurrent threads.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between nanonext versions 1.6.2 dated 2025-07-14 and 1.7.0 dated 2025-09-01
DESCRIPTION | 6 +-- MD5 | 45 +++++++++++++------------ NAMESPACE | 1 NEWS.md | 19 ++++++++++ R/aio.R | 49 ++++++++++++++++----------- R/context.R | 5 +- R/ncurl.R | 49 +++++++++++++++------------ R/utils.R | 5 +- inst/doc/nanonext.Rmd | 39 +++++++++++----------- inst/doc/nanonext.html | 41 +++++++++++------------ man/as.promise.ncurlAio.Rd | 8 +++- man/dot-interrupt.Rd | 3 - man/ncurl_aio.Rd | 3 + man/request.Rd | 5 +- man/stop_request.Rd |only src/aio.c | 66 +++++++++++++++++++++++++++++++------ src/core.c | 42 ++++++++++++++--------- src/init.c | 2 - src/nanonext.h | 5 +- src/proto.c | 5 +- src/sync.c | 35 ++++++++++--------- src/utils.c | 2 - tests/tests.R | 79 ++++++++++++++++++++++++++------------------- vignettes/nanonext.Rmd | 39 +++++++++++----------- 24 files changed, 331 insertions(+), 222 deletions(-)
Title: Simularia Tools for the Analysis of Air Pollution Data
Description: A set of tools developed at Simularia for Simularia, to help
preprocessing and post-processing of meteorological and air quality data.
Author: Giuseppe Carlino [aut, cre],
Matteo Paolo Costa [ctb],
Simularia [cph, fnd]
Maintainer: Giuseppe Carlino <g.carlino@simularia.it>
Diff between simulariatools versions 2.5.1 dated 2023-11-08 and 3.0.0 dated 2025-09-01
simulariatools-2.5.1/simulariatools/R/contourPlot.R |only simulariatools-2.5.1/simulariatools/R/createBaseMap.R |only simulariatools-2.5.1/simulariatools/R/geom_hollow_polygon.R |only simulariatools-2.5.1/simulariatools/R/stat_hollow_contour.R |only simulariatools-2.5.1/simulariatools/man/GeomHollowPolygon.Rd |only simulariatools-2.5.1/simulariatools/man/contourPlot.Rd |only simulariatools-2.5.1/simulariatools/man/createBaseMap.Rd |only simulariatools-2.5.1/simulariatools/man/stat_hollow_contour.Rd |only simulariatools-3.0.0/simulariatools/DESCRIPTION | 11 simulariatools-3.0.0/simulariatools/MD5 | 79 - simulariatools-3.0.0/simulariatools/NAMESPACE | 22 simulariatools-3.0.0/simulariatools/NEWS.md | 325 ++++-- simulariatools-3.0.0/simulariatools/R/contourPlot2.R | 465 ++++++---- simulariatools-3.0.0/simulariatools/R/downloadBasemap.R | 185 ++- simulariatools-3.0.0/simulariatools/R/importADSOBIN.R | 207 ++-- simulariatools-3.0.0/simulariatools/R/importRaster.R | 152 +-- simulariatools-3.0.0/simulariatools/R/importSurferGrd.R | 72 - simulariatools-3.0.0/simulariatools/R/plotAvgRad.R | 171 ++- simulariatools-3.0.0/simulariatools/R/plotAvgTemp.R | 363 +++++-- simulariatools-3.0.0/simulariatools/R/plotStabilityClass.R | 225 +++- simulariatools-3.0.0/simulariatools/R/removeOutliers.R | 29 simulariatools-3.0.0/simulariatools/R/rollingMax.R | 59 - simulariatools-3.0.0/simulariatools/R/simUtilities.R | 2 simulariatools-3.0.0/simulariatools/R/stMeteo.R | 5 simulariatools-3.0.0/simulariatools/R/stabilityClass.R | 199 ++-- simulariatools-3.0.0/simulariatools/R/vectorField.R | 132 +- simulariatools-3.0.0/simulariatools/R/zzz.R | 2 simulariatools-3.0.0/simulariatools/README.md | 179 ++- simulariatools-3.0.0/simulariatools/man/contourPlot2.Rd | 83 + simulariatools-3.0.0/simulariatools/man/downloadBasemap.Rd | 64 - simulariatools-3.0.0/simulariatools/man/figures/README-unnamed-chunk-5-1.png |binary simulariatools-3.0.0/simulariatools/man/figures/README-unnamed-chunk-6-1.png |binary simulariatools-3.0.0/simulariatools/man/figures/README-unnamed-chunk-7-1.png |only simulariatools-3.0.0/simulariatools/man/figures/README-unnamed-chunk-8-1.png |binary simulariatools-3.0.0/simulariatools/man/figures/README-unnamed-chunk-9-1.png |only simulariatools-3.0.0/simulariatools/man/figures/logo.png |binary simulariatools-3.0.0/simulariatools/man/figures/old_logo.png |only simulariatools-3.0.0/simulariatools/man/importADSOBIN.Rd | 42 simulariatools-3.0.0/simulariatools/man/importRaster.Rd | 62 - simulariatools-3.0.0/simulariatools/man/importSurferGrd.Rd | 12 simulariatools-3.0.0/simulariatools/man/plotAvgRad.Rd | 25 simulariatools-3.0.0/simulariatools/man/plotAvgTemp.Rd | 43 simulariatools-3.0.0/simulariatools/man/plotStabilityClass.Rd | 45 simulariatools-3.0.0/simulariatools/man/rollingMax.Rd | 32 simulariatools-3.0.0/simulariatools/man/stabilityClass.Rd | 41 simulariatools-3.0.0/simulariatools/man/vectorField.Rd | 70 + 46 files changed, 2140 insertions(+), 1263 deletions(-)
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More information about SemanticDistance at CRAN
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Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- logistic regression with penalised likelihood for rare events;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 8.2-0 dated 2025-07-23 and 8.2-1 dated 2025-09-01
DESCRIPTION | 8 - MD5 | 32 ++-- NEWS.md | 31 ++++ R/catmeth.R | 2 R/forest.R | 324 +++++++++++++++++++++++++++------------------ R/forest.metacum.R | 8 - R/meta-package.R | 14 + R/metaadd.R | 73 ++++------ R/metacont.R | 27 +-- R/metamerge.R | 3 R/settings.meta.R | 8 - inst/doc/meta-tutorial.pdf |binary inst/doc/meta-workflow.pdf |binary man/forest.meta.Rd | 16 +- man/meta-package.Rd | 14 + man/metacont.Rd | 27 +-- man/settings.meta.Rd | 8 - 17 files changed, 361 insertions(+), 234 deletions(-)
Title: Geographic Tools for Studying Gerrymandering
Description: A compilation of tools to complete common tasks for studying gerrymandering.
This focuses on the geographic tool side of common problems, such as linking
different levels of spatial units or estimating how to break up units. Functions
exist for creating redistricting-focused data for the US.
Author: Christopher T. Kenny [aut, cre] ,
Cory McCartan [ctb]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between geomander versions 2.3.0 dated 2024-02-15 and 2.5.0 dated 2025-09-01
geomander-2.3.0/geomander/R/utils-pipe.R |only geomander-2.3.0/geomander/man/pipe.Rd |only geomander-2.5.0/geomander/DESCRIPTION | 31 geomander-2.5.0/geomander/LICENCE | 2 geomander-2.5.0/geomander/MD5 | 256 geomander-2.5.0/geomander/NAMESPACE | 194 geomander-2.5.0/geomander/NEWS.md | 185 geomander-2.5.0/geomander/R/RcppExports.R | 70 geomander-2.5.0/geomander/R/adjacency.R | 538 - geomander-2.5.0/geomander/R/alarm.R | 270 geomander-2.5.0/geomander/R/baf_to_vtd.R | 232 geomander-2.5.0/geomander/R/center.R | 234 geomander-2.5.0/geomander/R/contiguity.R | 420 - geomander-2.5.0/geomander/R/count_connections.R | 48 geomander-2.5.0/geomander/R/data.R | 310 geomander-2.5.0/geomander/R/datatables.R | 567 - geomander-2.5.0/geomander/R/dra.R | 344 geomander-2.5.0/geomander/R/dra_vtd.R | 332 geomander-2.5.0/geomander/R/estimate.R | 446 - geomander-2.5.0/geomander/R/filter.R | 172 geomander-2.5.0/geomander/R/geary.R | 184 geomander-2.5.0/geomander/R/geomander-package.R | 42 geomander-2.5.0/geomander/R/geos_helpers.R | 153 geomander-2.5.0/geomander/R/gstar.R | 88 geomander-2.5.0/geomander/R/heda.R | 990 +- geomander-2.5.0/geomander/R/helpers.R | 14 geomander-2.5.0/geomander/R/lewis.R | 1947 ++-- geomander-2.5.0/geomander/R/match.R | 350 geomander-2.5.0/geomander/R/moran.R | 182 geomander-2.5.0/geomander/R/planar.R | 82 geomander-2.5.0/geomander/R/plots.R | 184 geomander-2.5.0/geomander/R/regionalize.R | 156 geomander-2.5.0/geomander/R/roxygen.R | 14 geomander-2.5.0/geomander/R/rpvnearme.R | 64 geomander-2.5.0/geomander/R/seam.R | 409 - geomander-2.5.0/geomander/R/sort.R | 60 geomander-2.5.0/geomander/R/split.R | 190 geomander-2.5.0/geomander/R/vest.R | 380 geomander-2.5.0/geomander/README.md | 196 geomander-2.5.0/geomander/build/partial.rdb |binary geomander-2.5.0/geomander/build/vignette.rds |binary geomander-2.5.0/geomander/inst/CITATION | 24 geomander-2.5.0/geomander/inst/WORDLIST | 157 geomander-2.5.0/geomander/inst/doc/Merging_Election_Data.R | 148 geomander-2.5.0/geomander/inst/doc/Merging_Election_Data.Rmd | 316 geomander-2.5.0/geomander/inst/doc/Merging_Election_Data.html | 971 +- geomander-2.5.0/geomander/inst/doc/Redistricting_School_Districts.R | 230 geomander-2.5.0/geomander/inst/doc/Redistricting_School_Districts.Rmd | 346 geomander-2.5.0/geomander/inst/doc/Redistricting_School_Districts.html | 1093 +- geomander-2.5.0/geomander/man/add_edge.Rd | 82 geomander-2.5.0/geomander/man/adjacency.Rd | 52 geomander-2.5.0/geomander/man/alarm_states.Rd | 42 geomander-2.5.0/geomander/man/baf_to_vtd.Rd | 99 geomander-2.5.0/geomander/man/block2prec.Rd | 60 geomander-2.5.0/geomander/man/block2prec_by_county.Rd | 72 geomander-2.5.0/geomander/man/check_contiguity.Rd | 134 geomander-2.5.0/geomander/man/check_polygon_contiguity.Rd | 60 geomander-2.5.0/geomander/man/checkerboard.Rd | 36 geomander-2.5.0/geomander/man/checkerboard_adj.Rd | 36 geomander-2.5.0/geomander/man/clean_vest.Rd | 44 geomander-2.5.0/geomander/man/compare_adjacencies.Rd | 66 geomander-2.5.0/geomander/man/count_connections.Rd | 50 geomander-2.5.0/geomander/man/create_block_table.Rd | 88 geomander-2.5.0/geomander/man/create_tract_table.Rd | 86 geomander-2.5.0/geomander/man/dra2r.Rd | 64 geomander-2.5.0/geomander/man/estimate_down.Rd | 68 geomander-2.5.0/geomander/man/estimate_up.Rd | 66 geomander-2.5.0/geomander/man/geo_estimate_down.Rd | 82 geomander-2.5.0/geomander/man/geo_estimate_up.Rd | 76 geomander-2.5.0/geomander/man/geo_filter.Rd | 74 geomander-2.5.0/geomander/man/geo_match.Rd | 120 geomander-2.5.0/geomander/man/geo_plot.Rd | 46 geomander-2.5.0/geomander/man/geo_plot_group.Rd | 76 geomander-2.5.0/geomander/man/geo_sort.Rd | 48 geomander-2.5.0/geomander/man/geo_trim.Rd | 80 geomander-2.5.0/geomander/man/geomander-package.Rd | 20 geomander-2.5.0/geomander/man/geos_centerish.Rd | 52 geomander-2.5.0/geomander/man/geos_circle_center.Rd | 54 geomander-2.5.0/geomander/man/get_alarm.Rd | 64 geomander-2.5.0/geomander/man/get_dra.Rd | 66 geomander-2.5.0/geomander/man/get_heda.Rd | 58 geomander-2.5.0/geomander/man/get_lewis.Rd | 58 geomander-2.5.0/geomander/man/get_rpvnearme.Rd | 44 geomander-2.5.0/geomander/man/get_vest.Rd | 70 geomander-2.5.0/geomander/man/global_gearys.Rd | 68 geomander-2.5.0/geomander/man/global_morans.Rd | 68 geomander-2.5.0/geomander/man/gstar_i.Rd | 64 geomander-2.5.0/geomander/man/heda_doi.Rd | 24 geomander-2.5.0/geomander/man/heda_party.Rd | 24 geomander-2.5.0/geomander/man/heda_states.Rd | 36 geomander-2.5.0/geomander/man/local_gearys.Rd | 64 geomander-2.5.0/geomander/man/local_morans.Rd | 64 geomander-2.5.0/geomander/man/nrcsd.Rd | 36 geomander-2.5.0/geomander/man/orange.Rd | 48 geomander-2.5.0/geomander/man/precincts.Rd | 44 geomander-2.5.0/geomander/man/r2dra.Rd | 76 geomander-2.5.0/geomander/man/regionalize.Rd | 62 geomander-2.5.0/geomander/man/rockland.Rd | 48 geomander-2.5.0/geomander/man/seam_adj.Rd | 80 geomander-2.5.0/geomander/man/seam_geom.Rd | 80 geomander-2.5.0/geomander/man/seam_rip.Rd | 80 geomander-2.5.0/geomander/man/seam_sew.Rd | 78 geomander-2.5.0/geomander/man/split_precinct.Rd | 96 geomander-2.5.0/geomander/man/st_centerish.Rd | 52 geomander-2.5.0/geomander/man/st_circle_center.Rd | 54 geomander-2.5.0/geomander/man/subtract_edge.Rd | 82 geomander-2.5.0/geomander/man/suggest_component_connection.Rd | 66 geomander-2.5.0/geomander/man/suggest_neighbors.Rd | 72 geomander-2.5.0/geomander/man/towns.Rd | 44 geomander-2.5.0/geomander/man/va18sub.Rd | 48 geomander-2.5.0/geomander/man/va_blocks.Rd | 46 geomander-2.5.0/geomander/man/va_vtd.Rd | 46 geomander-2.5.0/geomander/man/vest_abb.Rd | 24 geomander-2.5.0/geomander/man/vest_doi.Rd | 24 geomander-2.5.0/geomander/man/vest_party.Rd | 24 geomander-2.5.0/geomander/man/vest_states.Rd | 48 geomander-2.5.0/geomander/tests/spelling.R | 6 geomander-2.5.0/geomander/tests/testthat.R | 8 geomander-2.5.0/geomander/tests/testthat/setup.R | 24 geomander-2.5.0/geomander/tests/testthat/test-adjacency.R | 216 geomander-2.5.0/geomander/tests/testthat/test-centers.R | 156 geomander-2.5.0/geomander/tests/testthat/test-estimate.R | 132 geomander-2.5.0/geomander/tests/testthat/test-filter.R | 24 geomander-2.5.0/geomander/tests/testthat/test-match.R | 3926 +++++----- geomander-2.5.0/geomander/tests/testthat/test-planar.R | 78 geomander-2.5.0/geomander/tests/testthat/test-seam.R | 78 geomander-2.5.0/geomander/tests/testthat/test-sort.R | 24 geomander-2.5.0/geomander/tests/testthat/test-split.R | 106 geomander-2.5.0/geomander/vignettes/Merging_Election_Data.Rmd | 316 geomander-2.5.0/geomander/vignettes/Redistricting_School_Districts.Rmd | 346 130 files changed, 11538 insertions(+), 11586 deletions(-)
Title: Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Description: Path diagrams and visual analysis of various SEM packages' output.
Author: Sacha Epskamp [aut, cre],
Simon Stuber [ctb],
Jason Nak [ctb],
Myrthe Veenman [ctb],
Terrence D. Jorgensen [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between semPlot versions 1.1.6 dated 2022-08-10 and 1.1.7 dated 2025-09-01
DESCRIPTION | 9 MD5 | 8 NAMESPACE | 117 +++-- R/semspec.R | 190 ++++----- man/semPaths.Rd | 1138 ++++++++++++++++++++++++++++---------------------------- 5 files changed, 735 insertions(+), 727 deletions(-)
Title: Sample Size Analysis for Psychological Networks and More
Description: An implementation of the sample size computation method for network
models proposed by Constantin et al. (2023) <doi:10.1037/met0000555>.
The implementation takes the form of a three-step recursive algorithm
designed to find an optimal sample size given a model specification and a
performance measure of interest. It starts with a Monte Carlo simulation
step for computing the performance measure and a statistic at various sample
sizes selected from an initial sample size range. It continues with a
monotone curve-fitting step for interpolating the statistic across the entire
sample size range. The final step employs stratified bootstrapping to quantify
the uncertainty around the fitted curve.
Author: Mihai Constantin [aut, cre]
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between powerly versions 1.8.6 dated 2022-09-09 and 1.10.0 dated 2025-09-01
powerly-1.10.0/powerly/DESCRIPTION | 30 - powerly-1.10.0/powerly/LICENSE | 4 powerly-1.10.0/powerly/MD5 | 70 ++-- powerly-1.10.0/powerly/NAMESPACE | 19 - powerly-1.10.0/powerly/NEWS.md | 85 +++-- powerly-1.10.0/powerly/R/GgmModel.R | 1 powerly-1.10.0/powerly/R/Method.R | 94 +---- powerly-1.10.0/powerly/R/SolverFactory.R | 3 powerly-1.10.0/powerly/R/StepOne.R | 118 +----- powerly-1.10.0/powerly/R/StepThree.R | 211 ++---------- powerly-1.10.0/powerly/R/StepTwo.R | 270 ---------------- powerly-1.10.0/powerly/R/Validation.R | 141 +------- powerly-1.10.0/powerly/R/exports.R | 142 +++++--- powerly-1.10.0/powerly/R/logo.R | 2 powerly-1.10.0/powerly/R/methods.R |only powerly-1.10.0/powerly/R/powerly-package.R | 27 - powerly-1.10.0/powerly/README.md | 13 powerly-1.10.0/powerly/build/partial.rdb |binary powerly-1.10.0/powerly/inst/CITATION | 23 - powerly-1.10.0/powerly/inst/assets/logo/logo.txt | 2 powerly-1.10.0/powerly/man/plot.Method.Rd | 4 powerly-1.10.0/powerly/man/plot.StepOne.Rd | 8 powerly-1.10.0/powerly/man/plot.StepThree.Rd | 8 powerly-1.10.0/powerly/man/plot.StepTwo.Rd | 8 powerly-1.10.0/powerly/man/plot.Validation.Rd | 4 powerly-1.10.0/powerly/man/powerly-package.Rd | 6 powerly-1.10.0/powerly/man/powerly.Rd | 33 - powerly-1.10.0/powerly/man/summary.Method.Rd | 2 powerly-1.10.0/powerly/man/summary.Validation.Rd | 2 powerly-1.10.0/powerly/man/validate.Rd | 29 + powerly-1.10.0/powerly/tests/testthat/helpers.R | 51 --- powerly-1.10.0/powerly/tests/testthat/test-facades.R |only powerly-1.10.0/powerly/tests/testthat/test-feedback.R |only powerly-1.10.0/powerly/tests/testthat/test-solver.R | 58 --- powerly-1.10.0/powerly/tests/testthat/test-step-three.R | 58 ++- powerly-1.10.0/powerly/tests/testthat/test-step-two.R | 22 - powerly-1.8.6/powerly/R/Backend.R |only powerly-1.8.6/powerly/R/OsqpSolver.R |only powerly-1.8.6/powerly/tests/testthat/test-backend.R |only 39 files changed, 461 insertions(+), 1087 deletions(-)
Title: Weighted Cox-Regression for Nested Case-Control Data
Description: Fit Cox proportional hazard models with a weighted
partial likelihood. It handles one or multiple endpoints, additional matching
and makes it possible to reuse controls for other endpoints
Stoer NC and Samuelsen SO (2016) <doi:10.32614/rj-2016-030>.
Author: Nathalie C. Stoer [aut, cre],
Sven Ove Samuelsen [aut]
Maintainer: Nathalie C. Stoer <nast@fhi.no>
Diff between multipleNCC versions 1.2-4 dated 2024-02-12 and 1.2-5 dated 2025-09-01
DESCRIPTION | 20 ++++++++++++++------ MD5 | 16 ++++++++-------- man/Chenprob.Rd | 2 +- man/GAMprob.Rd | 4 ++-- man/GLMprob.Rd | 2 +- man/KMprob.Rd | 2 +- man/multipleNCC-package.Rd | 2 +- man/pGAM.Rd | 2 +- man/wpl.Rd | 2 +- 9 files changed, 30 insertions(+), 22 deletions(-)
Title: Generating Features for a Cohort
Description: An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.
Author: Martijn Schuemie [aut],
Marc Suchard [aut],
Patrick Ryan [aut],
Jenna Reps [aut],
Anthony Sena [aut],
Ger Inberg [aut, cre],
Observational Health Data Science and Informatics [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between FeatureExtraction versions 3.10.0 dated 2025-05-08 and 3.11.0 dated 2025-09-01
FeatureExtraction-3.10.0/FeatureExtraction/inst/java/featureExtraction-3.10.0.jar |only FeatureExtraction-3.11.0/FeatureExtraction/DESCRIPTION | 8 +- FeatureExtraction-3.11.0/FeatureExtraction/MD5 | 33 ++++---- FeatureExtraction-3.11.0/FeatureExtraction/NEWS.md | 7 + FeatureExtraction-3.11.0/FeatureExtraction/R/GetCovariates.R | 18 +++- FeatureExtraction-3.11.0/FeatureExtraction/R/GetCovariatesFromOtherCohorts.R | 39 ++++++++++ FeatureExtraction-3.11.0/FeatureExtraction/R/Normalization.R | 15 ++- FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/CreatingCustomCovariateBuilders.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/CreatingCustomCovariateBuildersKorean.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/UsingFeatureExtraction.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/doc/UsingFeatureExtractionKorean.pdf |binary FeatureExtraction-3.11.0/FeatureExtraction/inst/java/featureExtraction-3.11.0.jar |only FeatureExtraction-3.11.0/FeatureExtraction/man/getDbCovariateData.Rd | 8 +- FeatureExtraction-3.11.0/FeatureExtraction/man/replaceCovariateSettingsCohortSchemaTable.Rd |only FeatureExtraction-3.11.0/FeatureExtraction/tests/testthat/errorReportSql.txt |only FeatureExtraction-3.11.0/FeatureExtraction/tests/testthat/test-CovariateData.R | 23 +++++ FeatureExtraction-3.11.0/FeatureExtraction/tests/testthat/test-GetCohortBasedCovariates.R | 30 +++++++ FeatureExtraction-3.11.0/FeatureExtraction/vignettes/covariatesPerPerson |only 20 files changed, 152 insertions(+), 29 deletions(-)
More information about FeatureExtraction at CRAN
Permanent link
Title: Track your Data Pipelines
Description: Track and
document 'dplyr' data pipelines. As you filter, mutate, and join your
way through a data set, 'dtrackr' seamlessly keeps track of your data
flow and makes publication ready documentation of a data pipeline simple.
Author: Robert Challen [aut, cre]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between dtrackr versions 0.4.6 dated 2024-10-21 and 0.5.0 dated 2025-09-01
DESCRIPTION | 13 MD5 | 227 +-- NAMESPACE | 6 NEWS.md | 17 R/dot.R | 192 +- R/dtrackr.R | 2588 ++++++++++++++++++++++++++++--------- README.md | 10 build/vignette.rds |binary inst/WORDLIST | 9 inst/doc/consort-example.html | 36 inst/doc/dtrackr-options.R | 6 inst/doc/dtrackr-options.Rmd | 65 inst/doc/dtrackr-options.html | 266 ++- inst/doc/dtrackr.R | 12 inst/doc/dtrackr.Rmd | 40 inst/doc/dtrackr.html | 657 ++++++--- inst/doc/grouping-and-nesting.R |only inst/doc/grouping-and-nesting.Rmd |only inst/doc/grouping-and-nesting.html |only inst/examples/tidyr-examples.R |only man/add_count.trackr_df.Rd | 46 man/add_tally.Rd | 2 man/anti_join.trackr_df.Rd | 2 man/arrange.trackr_df.Rd | 2 man/bind_cols.Rd | 2 man/bind_rows.Rd | 2 man/count_subgroup.Rd | 2 man/distinct.trackr_df.Rd | 4 man/dtrackr-package.Rd | 2 man/figures/README-flowchart.png |binary man/filter.trackr_df.Rd | 4 man/flowchart.Rd | 15 man/full_join.trackr_df.Rd | 2 man/group_by.trackr_df.Rd | 14 man/group_modify.trackr_df.Rd | 8 man/include_any.Rd | 2 man/inner_join.trackr_df.Rd | 2 man/intersect.trackr_df.Rd | 2 man/left_join.trackr_df.Rd | 2 man/mutate.trackr_df.Rd | 2 man/nest.trackr_df.Rd |only man/nest_join.trackr_df.Rd | 2 man/p_add_count.Rd | 2 man/p_add_tally.Rd | 2 man/p_anti_join.Rd | 2 man/p_arrange.Rd | 2 man/p_bind_cols.Rd | 2 man/p_bind_rows.Rd | 2 man/p_copy.Rd | 1 man/p_count_subgroup.Rd | 2 man/p_distinct.Rd | 4 man/p_filter.Rd | 4 man/p_flowchart.Rd | 15 man/p_full_join.Rd | 2 man/p_get_as_dot.Rd | 28 man/p_group_by.Rd | 14 man/p_group_modify.Rd | 8 man/p_include_any.Rd | 2 man/p_inner_join.Rd | 2 man/p_intersect.Rd | 2 man/p_left_join.Rd | 2 man/p_mutate.Rd | 2 man/p_nest.Rd |only man/p_nest_join.Rd | 2 man/p_pause.Rd | 2 man/p_pivot_longer.Rd | 116 + man/p_pivot_wider.Rd | 128 + man/p_reframe.Rd | 6 man/p_relocate.Rd | 2 man/p_rename.Rd | 2 man/p_rename_with.Rd | 2 man/p_right_join.Rd | 2 man/p_select.Rd | 2 man/p_semi_join.Rd | 2 man/p_setdiff.Rd | 2 man/p_slice.Rd | 6 man/p_slice_head.Rd | 6 man/p_slice_max.Rd | 6 man/p_slice_min.Rd | 6 man/p_slice_sample.Rd | 6 man/p_slice_tail.Rd | 6 man/p_status.Rd | 2 man/p_summarise.Rd | 6 man/p_tagged.Rd | 2 man/p_transmute.Rd | 2 man/p_ungroup.Rd | 6 man/p_union.Rd | 2 man/p_union_all.Rd | 2 man/p_unnest.Rd |only man/pause.Rd | 2 man/pivot_longer.trackr_df.Rd | 116 + man/pivot_wider.trackr_df.Rd | 128 + man/plot.trackr_graph.Rd | 21 man/reframe.trackr_df.Rd | 6 man/relocate.trackr_df.Rd | 2 man/rename.trackr_df.Rd | 2 man/rename_with.trackr_df.Rd | 2 man/right_join.trackr_df.Rd | 2 man/select.trackr_df.Rd | 2 man/semi_join.trackr_df.Rd | 2 man/setdiff.trackr_df.Rd | 31 man/slice.trackr_df.Rd | 6 man/slice_head.trackr_df.Rd | 6 man/slice_max.trackr_df.Rd | 6 man/slice_min.trackr_df.Rd | 6 man/slice_sample.trackr_df.Rd | 6 man/slice_tail.trackr_df.Rd | 6 man/status.Rd | 2 man/summarise.trackr_df.Rd | 6 man/tagged.Rd | 2 man/transmute.trackr_df.Rd | 2 man/ungroup.trackr_df.Rd | 6 man/union.trackr_df.Rd | 2 man/union_all.trackr_df.Rd | 2 man/unnest.trackr_df.Rd |only tests/testthat/test-group_by.R | 119 + vignettes/dtrackr-options.Rmd | 65 vignettes/dtrackr.Rmd | 40 vignettes/grouping-and-nesting.Rmd |only 119 files changed, 3844 insertions(+), 1443 deletions(-)
Title: General Engine for Eco-Evolutionary Simulations
Description: Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" <doi:10.1371/journal.pbio.3001340>.
Author: ETH Zuerich [cph],
Oskar Hagen [aut, cre] ,
Benjamin Flueck [aut] ,
Fabian Fopp [aut] ,
Juliano S. Cabral [aut] ,
Florian Hartig [aut] ,
Mikael Pontarp [aut] ,
Charles Novaes de Santana [ctb] ,
Thiago F. Rangel [aut] ,
Theo Gaboriau [ctb] ,
Loic Pellis [...truncated...]
Maintainer: Oskar Hagen <oskar@hagen.bio>
Diff between gen3sis versions 1.5.11 dated 2023-11-22 and 1.6.0 dated 2025-09-01
gen3sis-1.5.11/gen3sis/man/skeleton_config.Rd |only gen3sis-1.6.0/gen3sis/DESCRIPTION | 13 gen3sis-1.6.0/gen3sis/MD5 | 238 - gen3sis-1.6.0/gen3sis/NAMESPACE | 128 gen3sis-1.6.0/gen3sis/NEWS.md | 49 gen3sis-1.6.0/gen3sis/R/RcppExports.R | 62 gen3sis-1.6.0/gen3sis/R/adapters.R |only gen3sis-1.6.0/gen3sis/R/config_handling.R | 558 +-- gen3sis-1.6.0/gen3sis/R/dispersal.R | 212 - gen3sis-1.6.0/gen3sis/R/divergence.R | 192 - gen3sis-1.6.0/gen3sis/R/ecology.R | 242 - gen3sis-1.6.0/gen3sis/R/evolution.R | 142 gen3sis-1.6.0/gen3sis/R/gen3sis_landscape.R | 60 gen3sis-1.6.0/gen3sis/R/gen3sis_main.R | 621 +-- gen3sis-1.6.0/gen3sis/R/gen3sis_species.R | 326 - gen3sis-1.6.0/gen3sis/R/input_creation.R | 582 +-- gen3sis-1.6.0/gen3sis/R/internal_functions.R | 330 +- gen3sis-1.6.0/gen3sis/R/observations.R | 320 - gen3sis-1.6.0/gen3sis/R/plotting_functions.R | 784 ++-- gen3sis-1.6.0/gen3sis/R/simulation.R | 704 ++-- gen3sis-1.6.0/gen3sis/R/skeleton_config.R | 307 - gen3sis-1.6.0/gen3sis/R/skeleton_landscape_metadata.R | 84 gen3sis-1.6.0/gen3sis/R/speciation.R | 412 +- gen3sis-1.6.0/gen3sis/R/state_handling.R | 180 - gen3sis-1.6.0/gen3sis/R/summary_statistics.R | 386 +- gen3sis-1.6.0/gen3sis/R/zzz.R | 10 gen3sis-1.6.0/gen3sis/README.md | 196 - gen3sis-1.6.0/gen3sis/build/vignette.rds |binary gen3sis-1.6.0/gen3sis/inst/CITATION | 28 gen3sis-1.6.0/gen3sis/inst/doc/create_config.R | 558 +-- gen3sis-1.6.0/gen3sis/inst/doc/create_config.Rmd | 818 ++-- gen3sis-1.6.0/gen3sis/inst/doc/create_config.html | 1638 +++++----- gen3sis-1.6.0/gen3sis/inst/doc/create_input_landscape.R | 300 - gen3sis-1.6.0/gen3sis/inst/doc/create_input_landscape.Rmd | 468 +- gen3sis-1.6.0/gen3sis/inst/doc/create_input_landscape.html | 1084 +++--- gen3sis-1.6.0/gen3sis/inst/doc/design_landscape.R | 188 - gen3sis-1.6.0/gen3sis/inst/doc/design_landscape.Rmd | 324 - gen3sis-1.6.0/gen3sis/inst/doc/design_landscape.html | 1090 +++--- gen3sis-1.6.0/gen3sis/inst/doc/introduction.R | 370 +- gen3sis-1.6.0/gen3sis/inst/doc/introduction.Rmd | 706 ++-- gen3sis-1.6.0/gen3sis/inst/doc/introduction.html | 1476 ++++----- gen3sis-1.6.0/gen3sis/inst/examples/create_input_config_help.R | 34 gen3sis-1.6.0/gen3sis/inst/examples/create_input_landscape_help.R | 120 gen3sis-1.6.0/gen3sis/inst/examples/create_species_help.R | 54 gen3sis-1.6.0/gen3sis/inst/examples/get_divergence_matrix_help.R | 16 gen3sis-1.6.0/gen3sis/inst/examples/get_geo_richness_help.R | 36 gen3sis-1.6.0/gen3sis/inst/examples/plot_ranges_help.R | 54 gen3sis-1.6.0/gen3sis/inst/examples/plot_raster_single_help.R | 26 gen3sis-1.6.0/gen3sis/inst/examples/plot_richness_help.R | 36 gen3sis-1.6.0/gen3sis/inst/examples/plot_species_abundance_help.R | 40 gen3sis-1.6.0/gen3sis/inst/examples/plot_species_presence_help.R | 40 gen3sis-1.6.0/gen3sis/inst/examples/plot_summary_help.R | 36 gen3sis-1.6.0/gen3sis/inst/examples/prepare_directories_help.R | 18 gen3sis-1.6.0/gen3sis/inst/examples/run_simulation_help.R | 24 gen3sis-1.6.0/gen3sis/inst/examples/save_abundance_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_divergence_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_landscape_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_occupancy_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_phylogeny_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_richness_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/save_species_help.R | 12 gen3sis-1.6.0/gen3sis/inst/examples/save_traits_help.R | 8 gen3sis-1.6.0/gen3sis/inst/examples/verify_config_help.R | 24 gen3sis-1.6.0/gen3sis/inst/examples/write_config_skeleton_help.R | 6 gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/config/config_fast.R | 316 - gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/config/config_rte.R | 310 - gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/landscape/METADATA.txt | 70 gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/reference_saves/phy.nex | 10 gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/reference_saves/phy.txt | 10 gen3sis-1.6.0/gen3sis/inst/extdata/CaseStudy1/reference_saves/sgen3sis_summary.rds |binary gen3sis-1.6.0/gen3sis/inst/extdata/EmptyConfig/config_empty.R | 280 - gen3sis-1.6.0/gen3sis/inst/extdata/SouthAmerica/config/config_southamerica.R | 370 +- gen3sis-1.6.0/gen3sis/inst/extdata/SouthAmerica/config/config_southamerica_observer.R | 372 +- gen3sis-1.6.0/gen3sis/inst/extdata/SouthAmerica/landscape/METADATA.txt | 130 gen3sis-1.6.0/gen3sis/inst/extdata/WorldCenter/input_rasters/area_rasters.grd | 50 gen3sis-1.6.0/gen3sis/inst/extdata/WorldCenter/input_rasters/arid_rasters.grd | 50 gen3sis-1.6.0/gen3sis/inst/extdata/WorldCenter/input_rasters/temp_rasters.grd | 50 gen3sis-1.6.0/gen3sis/man/apply_ecology.Rd | 64 gen3sis-1.6.0/gen3sis/man/apply_evolution.Rd | 58 gen3sis-1.6.0/gen3sis/man/color_richness.Rd | 34 gen3sis-1.6.0/gen3sis/man/color_richness_non_CVDCBP.Rd | 34 gen3sis-1.6.0/gen3sis/man/create_ancestor_species.Rd | 48 gen3sis-1.6.0/gen3sis/man/create_input_config.Rd | 76 gen3sis-1.6.0/gen3sis/man/create_input_landscape.Rd | 252 - gen3sis-1.6.0/gen3sis/man/create_species.Rd | 108 gen3sis-1.6.0/gen3sis/man/evolution_mode_none.Rd | 46 gen3sis-1.6.0/gen3sis/man/gen3sis.Rd | 133 gen3sis-1.6.0/gen3sis/man/get_dispersal_values.Rd | 82 gen3sis-1.6.0/gen3sis/man/get_divergence_factor.Rd | 80 gen3sis-1.6.0/gen3sis/man/get_divergence_matrix.Rd | 64 gen3sis-1.6.0/gen3sis/man/get_geo_richness.Rd | 86 gen3sis-1.6.0/gen3sis/man/plot_landscape.Rd | 34 gen3sis-1.6.0/gen3sis/man/plot_landscape_overview.Rd | 42 gen3sis-1.6.0/gen3sis/man/plot_ranges.Rd | 104 gen3sis-1.6.0/gen3sis/man/plot_raster_multiple.Rd | 44 gen3sis-1.6.0/gen3sis/man/plot_raster_single.Rd | 86 gen3sis-1.6.0/gen3sis/man/plot_richness.Rd | 80 gen3sis-1.6.0/gen3sis/man/plot_species_abundance.Rd | 82 gen3sis-1.6.0/gen3sis/man/plot_species_presence.Rd | 82 gen3sis-1.6.0/gen3sis/man/plot_summary.Rd | 90 gen3sis-1.6.0/gen3sis/man/prepare_directories.Rd | 82 gen3sis-1.6.0/gen3sis/man/run_simulation.Rd | 152 gen3sis-1.6.0/gen3sis/man/save_abundance.Rd | 48 gen3sis-1.6.0/gen3sis/man/save_divergence.Rd | 48 gen3sis-1.6.0/gen3sis/man/save_landscape.Rd | 56 gen3sis-1.6.0/gen3sis/man/save_occupancy.Rd | 42 gen3sis-1.6.0/gen3sis/man/save_phylogeny.Rd | 42 gen3sis-1.6.0/gen3sis/man/save_richness.Rd | 48 gen3sis-1.6.0/gen3sis/man/save_species.Rd | 52 gen3sis-1.6.0/gen3sis/man/save_traits.Rd | 48 gen3sis-1.6.0/gen3sis/man/verify_config.Rd | 72 gen3sis-1.6.0/gen3sis/man/write_config_skeleton.Rd | 56 gen3sis-1.6.0/gen3sis/tests/testthat.R | 12 gen3sis-1.6.0/gen3sis/tests/testthat/test-config_handling.R | 209 - gen3sis-1.6.0/gen3sis/tests/testthat/test-distances.R | 62 gen3sis-1.6.0/gen3sis/tests/testthat/test-gen3sis_main.R | 41 gen3sis-1.6.0/gen3sis/tests/testthat/test-input_creation.R | 293 - gen3sis-1.6.0/gen3sis/vignettes/create_config.Rmd | 818 ++-- gen3sis-1.6.0/gen3sis/vignettes/create_input_landscape.Rmd | 468 +- gen3sis-1.6.0/gen3sis/vignettes/design_landscape.Rmd | 324 - gen3sis-1.6.0/gen3sis/vignettes/introduction.Rmd | 706 ++-- 121 files changed, 12187 insertions(+), 12137 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using
priority-queue shortest paths (Padgham (2019) <doi:10.32866/6945>).
Weighted directed graphs have weights from A to B which may differ
from those from B to A. Dual-weighted directed graphs have two sets
of such weights. A canonical example is a street network to be used
for routing in which routes are calculated by weighting distances
according to the type of way and mode of transport, yet lengths of
routes must be calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
David Cooley [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Andrea Gilardi [ctb] ,
Eduardo Leoni [ctb] ,
Shane Saunders [cph] ,
Stanislaw Adaszewski [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.4.2 dated 2025-03-06 and 0.4.3 dated 2025-09-01
dodgr-0.4.2/dodgr/tests/sc-conversion-fns.R |only dodgr-0.4.3/dodgr/DESCRIPTION | 23 - dodgr-0.4.3/dodgr/MD5 | 145 +++---- dodgr-0.4.3/dodgr/NAMESPACE | 1 dodgr-0.4.3/dodgr/NEWS.md | 25 + dodgr-0.4.3/dodgr/R/cache.R | 12 dodgr-0.4.3/dodgr/R/centrality.R | 7 dodgr-0.4.3/dodgr/R/compound-junctions.R | 10 dodgr-0.4.3/dodgr/R/deduplicate.R | 10 dodgr-0.4.3/dodgr/R/dists-categorical.R | 38 + dodgr-0.4.3/dodgr/R/dists.R | 32 + dodgr-0.4.3/dodgr/R/flowmap.R | 1 dodgr-0.4.3/dodgr/R/flows.R | 248 ++++++++---- dodgr-0.4.3/dodgr/R/fund-cycles.R | 7 dodgr-0.4.3/dodgr/R/graph-conversion.R | 6 dodgr-0.4.3/dodgr/R/graph-functions-misc.R | 113 ----- dodgr-0.4.3/dodgr/R/graph-functions-spatial.R |only dodgr-0.4.3/dodgr/R/graph-functions.R | 19 dodgr-0.4.3/dodgr/R/iso.R | 119 ++++- dodgr-0.4.3/dodgr/R/match-points.R | 31 - dodgr-0.4.3/dodgr/R/save_load_streetnet.R | 2 dodgr-0.4.3/dodgr/R/utils.R | 93 ++++ dodgr-0.4.3/dodgr/R/weight-railway.R | 8 dodgr-0.4.3/dodgr/R/weight-streetnet-times.R | 27 + dodgr-0.4.3/dodgr/R/weight-streetnet.R | 36 + dodgr-0.4.3/dodgr/R/weighting_profiles.R | 4 dodgr-0.4.3/dodgr/README.md | 68 +-- dodgr-0.4.3/dodgr/build/vignette.rds |binary dodgr-0.4.3/dodgr/inst/doc/dists-categorical.html | 42 +- dodgr-0.4.3/dodgr/inst/doc/dodgr.html | 144 ++++-- dodgr-0.4.3/dodgr/inst/doc/flows.html | 18 dodgr-0.4.3/dodgr/inst/doc/parallel.html | 4 dodgr-0.4.3/dodgr/inst/doc/times.html | 12 dodgr-0.4.3/dodgr/man/clear_dodgr_cache.Rd | 5 dodgr-0.4.3/dodgr/man/dodgr.Rd | 3 dodgr-0.4.3/dodgr/man/dodgr_cache_off.Rd | 5 dodgr-0.4.3/dodgr/man/dodgr_cache_on.Rd | 5 dodgr-0.4.3/dodgr/man/dodgr_deduplicate_graph.Rd | 11 dodgr-0.4.3/dodgr/man/dodgr_distances.Rd | 17 dodgr-0.4.3/dodgr/man/dodgr_dists.Rd | 37 - dodgr-0.4.3/dodgr/man/dodgr_dists_categorical.Rd | 26 - dodgr-0.4.3/dodgr/man/dodgr_dists_nearest.Rd | 6 dodgr-0.4.3/dodgr/man/dodgr_flowmap.Rd | 3 dodgr-0.4.3/dodgr/man/dodgr_flows_aggregate.Rd | 33 - dodgr-0.4.3/dodgr/man/dodgr_flows_disperse.Rd | 97 +++- dodgr-0.4.3/dodgr/man/dodgr_flows_si.Rd | 135 ++++-- dodgr-0.4.3/dodgr/man/dodgr_full_cycles.Rd | 4 dodgr-0.4.3/dodgr/man/dodgr_isochrones.Rd | 39 + dodgr-0.4.3/dodgr/man/dodgr_isodists.Rd | 40 + dodgr-0.4.3/dodgr/man/dodgr_isoverts.Rd | 45 +- dodgr-0.4.3/dodgr/man/dodgr_load_streetnet.Rd | 3 dodgr-0.4.3/dodgr/man/dodgr_paths.Rd | 6 dodgr-0.4.3/dodgr/man/dodgr_save_streetnet.Rd | 3 dodgr-0.4.3/dodgr/man/dodgr_sflines_to_poly.Rd | 5 dodgr-0.4.3/dodgr/man/dodgr_streetnet.Rd | 1 dodgr-0.4.3/dodgr/man/dodgr_streetnet_geodesic.Rd |only dodgr-0.4.3/dodgr/man/dodgr_streetnet_sc.Rd | 1 dodgr-0.4.3/dodgr/man/dodgr_times.Rd | 37 - dodgr-0.4.3/dodgr/man/estimate_centrality_threshold.Rd | 5 dodgr-0.4.3/dodgr/man/estimate_centrality_time.Rd | 4 dodgr-0.4.3/dodgr/man/match_points_to_graph.Rd | 7 dodgr-0.4.3/dodgr/man/summary.dodgr_dists_categorical.Rd | 15 dodgr-0.4.3/dodgr/man/weight_railway.Rd | 1 dodgr-0.4.3/dodgr/man/weight_streetnet.Rd | 32 + dodgr-0.4.3/dodgr/man/write_dodgr_wt_profile.Rd | 5 dodgr-0.4.3/dodgr/src/Makevars | 7 dodgr-0.4.3/dodgr/src/Makevars.win | 7 dodgr-0.4.3/dodgr/tests/testthat/helper-sc-conversion-fns.R |only dodgr-0.4.3/dodgr/tests/testthat/test-cache.R | 64 +-- dodgr-0.4.3/dodgr/tests/testthat/test-geodist-measure.R |only dodgr-0.4.3/dodgr/tests/testthat/test-graph-conversion.R | 10 dodgr-0.4.3/dodgr/tests/testthat/test-graph-fns.R | 4 dodgr-0.4.3/dodgr/tests/testthat/test-iso.R | 11 dodgr-0.4.3/dodgr/tests/testthat/test-match-pts-fns.R | 6 dodgr-0.4.3/dodgr/tests/testthat/test-sc.R | 24 - dodgr-0.4.3/dodgr/tests/testthat/test-streetnet.R | 71 +++ 76 files changed, 1392 insertions(+), 753 deletions(-)
Title: R Bindings to 'hiredis'
Description: A 'hiredis' wrapper that includes support for
transactions, pipelining, blocking subscription, serialisation of
all keys and values, 'Redis' error handling with R errors.
Includes an automatically generated 'R6' interface to the full
'hiredis' API. Generated functions are faithful to the
'hiredis' documentation while attempting to match R's argument
semantics. Serialisation must be explicitly done by the user, but
both binary and text-mode serialisation is supported.
Author: Rich FitzJohn [aut, cre]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between redux versions 1.1.4 dated 2023-11-30 and 1.1.5 dated 2025-09-01
redux-1.1.4/redux/src/Makevars.ucrt |only redux-1.1.5/redux/DESCRIPTION | 14 redux-1.1.5/redux/MD5 | 127 - redux-1.1.5/redux/R/config.R | 58 redux-1.1.5/redux/R/connection.R | 120 + redux-1.1.5/redux/R/hiredis.R | 60 redux-1.1.5/redux/R/redis_api.R | 4 redux-1.1.5/redux/R/redis_tools.R | 147 +- redux-1.1.5/redux/R/scan.R | 50 redux-1.1.5/redux/R/script.R | 14 redux-1.1.5/redux/R/serialisation.R | 18 redux-1.1.5/redux/R/storr.R | 12 redux-1.1.5/redux/R/zzz.R | 12 redux-1.1.5/redux/README.md | 6 redux-1.1.5/redux/build/vignette.rds |binary redux-1.1.5/redux/configure | 2 redux-1.1.5/redux/inst/doc/redux.Rmd | 258 ++- redux-1.1.5/redux/inst/doc/redux.html | 671 ++++++---- redux-1.1.5/redux/man/from_redis_hash.Rd | 52 redux-1.1.5/redux/man/hiredis.Rd | 54 redux-1.1.5/redux/man/object_to_string.Rd | 13 redux-1.1.5/redux/man/redis.Rd | 3 redux-1.1.5/redux/man/redis_config.Rd | 58 redux-1.1.5/redux/man/redis_connection.Rd | 116 + redux-1.1.5/redux/man/redis_info.Rd | 30 redux-1.1.5/redux/man/redis_multi.Rd | 2 redux-1.1.5/redux/man/redis_scripts.Rd | 6 redux-1.1.5/redux/man/redis_time.Rd | 20 redux-1.1.5/redux/man/scan_apply.Rd | 28 redux-1.1.5/redux/man/storr_redis_api.Rd | 2 redux-1.1.5/redux/src/Makevars.win | 9 redux-1.1.5/redux/tests/testthat/test-aaa.R | 2 redux-1.1.5/redux/tests/testthat/test-command.R | 2 redux-1.1.5/redux/tests/testthat/test-config.R | 6 redux-1.1.5/redux/tests/testthat/test-connection-redux.R | 2 redux-1.1.5/redux/tests/testthat/test-connection.R | 4 redux-1.1.5/redux/tests/testthat/test-conversions.R | 6 redux-1.1.5/redux/tests/testthat/test-interface.R | 4 redux-1.1.5/redux/tests/testthat/test-interleave.R | 2 redux-1.1.5/redux/tests/testthat/test-print.R | 2 redux-1.1.5/redux/tests/testthat/test-redis-commands.R | 4 redux-1.1.5/redux/tests/testthat/test-redis-socket.R | 2 redux-1.1.5/redux/tests/testthat/test-redis.R | 10 redux-1.1.5/redux/tests/testthat/test-scan.R | 4 redux-1.1.5/redux/tests/testthat/test-serialisation.R | 10 redux-1.1.5/redux/tests/testthat/test-storr.R | 4 redux-1.1.5/redux/tests/testthat/test-tools.R | 16 redux-1.1.5/redux/tests/testthat/test-util.R | 4 redux-1.1.5/redux/tests/testthat/test-zzz-commands-cluster.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-connection.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-generic.R | 11 redux-1.1.5/redux/tests/testthat/test-zzz-commands-geo.R | 7 redux-1.1.5/redux/tests/testthat/test-zzz-commands-hash.R | 4 redux-1.1.5/redux/tests/testthat/test-zzz-commands-hyperloglog.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-list.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-scripting.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-server.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-set.R | 4 redux-1.1.5/redux/tests/testthat/test-zzz-commands-sorted-set.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-string.R | 6 redux-1.1.5/redux/tests/testthat/test-zzz-commands-subscribe.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-commands-transactions.R | 2 redux-1.1.5/redux/tests/testthat/test-zzz-subscribe.R | 6 redux-1.1.5/redux/tools/winlibs.R | 21 redux-1.1.5/redux/vignettes/redux.Rmd | 258 ++- 65 files changed, 1394 insertions(+), 991 deletions(-)
Title: Anytime-Valid Sequential Estimation of Monte-Carlo p-Values
Description: Anytime-valid sequential estimation of the p-value of a test calibrated by Monte-Carlo simulation, as described in Stoepker & Castro (2024) <doi:10.48550/arXiv.2409.18908>.
Author: Ivo V. Stoepker [aut, cre],
Rui M. Castro [aut]
Maintainer: Ivo V. Stoepker <i.v.stoepker@tue.nl>
Diff between avseqmc versions 1.0.1 dated 2025-06-27 and 1.0.2 dated 2025-09-01
DESCRIPTION | 6 MD5 | 10 R/avseqmc.R | 460 ++++++++++++++++++++++----------------------- R/output_functions.R | 7 inst/doc/Introduction.html | 56 +++-- man/avseqmc.Rd | 2 6 files changed, 275 insertions(+), 266 deletions(-)
Title: Variable Selection Oriented LASSO Bagging Algorithm
Description: A wrapped LASSO approach by integrating an ensemble learning strategy to help select efficient, stable, and high confidential variables from omics-based data. Using a bagging strategy in combination of a parametric method or inflection point search method for cut-off threshold determination. This package can integrate and vote variables generated from multiple LASSO models to determine the optimal candidates. Luo H, Zhao Q, et al (2020) <doi:10.1126/scitranslmed.aax7533> for more details.
Author: Jiaqi Liang [aut],
Chaoye Wang [aut, cre]
Maintainer: Chaoye Wang <wangcy1@sysucc.org.cn>
Diff between VSOLassoBag versions 0.99.1 dated 2023-03-24 and 1.0 dated 2025-09-01
DESCRIPTION | 10 MD5 | 22 NAMESPACE | 12 R/LessPermutation.R | 771 ++-- R/lassoBagAddGPD.R | 1325 +++---- R/simpleEstimation.R | 49 build/vignette.rds |binary inst/doc/VSOLassoBag.R | 106 inst/doc/VSOLassoBag.html | 7937 +++++++++++++++++++++++----------------------- man/LessPermutation.Rd | 76 man/VSOLassoBag.Rd | 449 +- man/simpleEstimation.Rd | 52 12 files changed, 5369 insertions(+), 5440 deletions(-)
Title: Visualization Methods for Raster Data
Description: Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
Author: Oscar Perpinan Lamigueiro [cre, aut] ,
Robert Hijmans [aut],
Alexandre Courtiol [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@upm.es>
Diff between rasterVis versions 0.51.6 dated 2023-11-01 and 0.51.7 dated 2025-09-01
DESCRIPTION | 14 +++++++------- MD5 | 36 ++++++++++++++++++------------------ R/dataframe.R | 11 ++++------- README.md | 5 ++--- build/partial.rdb |binary inst/CITATION | 2 +- man/bwplot-methods.Rd | 20 ++++++++++---------- man/chooseRegion.Rd | 4 ++-- man/densityplot-methods.Rd | 10 +++++----- man/hexbinplot.Rd | 8 ++++---- man/histogram-methods.Rd | 8 ++++---- man/horizonplot-methods.Rd | 6 +++--- man/hovmoller-methods.Rd | 6 +++--- man/levelplot-methods.Rd | 38 +++++++++++++++++++------------------- man/rasterTheme.Rd | 12 ++++++------ man/splom-methods.Rd | 8 ++++---- man/vectorplot.Rd | 18 +++++++++--------- man/xyLayer.Rd | 4 ++-- man/xyplot-methods.Rd | 6 +++--- 19 files changed, 106 insertions(+), 110 deletions(-)
Title: Diversity Indices for Numerical Matrices
Description: Provides methods for calculating diversity indices on numerical
matrices, based on information theory, following Rocchini, Marcantonio
and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini et al.
(2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre],
Martina Iannacito [ctb] ,
Elisa Marchetto [ctb] ,
Elisa Thouverai [ctb] ,
Michele Torresani [ctb] ,
Daniele Da Re [ctb] ,
Clara Tattoni [ctb] ,
Giovanni Bacaro [ctb] ,
Saverio Vicario [aut],
Carlo Ricotta [ctb] ,
Duccio [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>
Diff between rasterdiv versions 0.3.6 dated 2024-11-06 and 0.3.7 dated 2025-09-01
DESCRIPTION | 76 +++++++++------ MD5 | 24 ++-- NEWS.md | 6 + R/paRaoAreaS.R | 2 R/paRaoP.R | 6 - R/paRaoS.R | 13 +- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/rasterdiv_01_Basics.html | 4 inst/doc/rasterdiv_02_Area_based_Rao.R | 82 ++++++++--------- inst/doc/rasterdiv_02_Area_based_Rao.html | 4 inst/doc/rasterdiv_03_Advanced_multidimension_Rao.R | 68 +++++++------- inst/doc/rasterdiv_03_Advanced_multidimension_Rao.html | 4 13 files changed, 154 insertions(+), 137 deletions(-)
Title: Algorithms for the Subject Graphs and Network Optimization
Description: Informal implementation of some algorithms from Graph
Theory and Combinatorial Optimization which arise in the subject
"Graphs and Network Optimization" from first course of the EUPLA
degree of Data Engineering in Industrial Processes.
Author: Cesar Asensio [aut, cre]
Maintainer: Cesar Asensio <casencha@unizar.es>
Diff between gor versions 1.0 dated 2023-05-03 and 2.0 dated 2025-09-01
DESCRIPTION | 23 MD5 | 93 - NAMESPACE | 6 R/1-grafos-basic.R | 82 - R/10-grafos-TSP.R | 2090 ++++++++++++++++++------------------- R/11-grafos-NPdif.R | 1245 +++++++++++----------- R/3-grafos-color.R | 34 R/5-grafos-arbol.R | 66 - R/6-grafos-matriz.R | 110 - R/7-grafos-optim.R | 495 +++++++- R/gor-package.R | 14 man/apply_incidence_map.Rd | 20 man/bfs_tree.Rd | 5 man/build_cover_approx.Rd | 1 man/build_cover_greedy.Rd | 1 man/build_cover_random.Rd | 1 man/build_cut_greedy.Rd | 1 man/build_cut_random.Rd | 5 man/build_tour_2tree.Rd | 2 man/build_tour_greedy.Rd | 2 man/compute_cut_weight.Rd | 8 man/compute_lower_bound_1tree.Rd | 15 man/crossover_sequences.Rd | 4 man/dfs_tree.Rd | 5 man/dijk.Rd | 96 + man/find_cover_BB.Rd | 5 man/find_tour_BB.Rd | 2 man/gauge_tour.Rd | 6 man/generate_fundamental_cycles.Rd | 12 man/gor.Rd | 14 man/improve_cover_flip.Rd | 1 man/improve_cut_flip.Rd | 1 man/improve_tour_3opt.Rd | 2 man/improve_tour_LinKer.Rd | 2 man/is_cover.Rd | 5 man/krus.Rd |only man/make_cube.Rd |only man/neigh_index.Rd | 4 man/next_index.Rd | 2 man/plot_cover.Rd | 1 man/plot_cut.Rd | 1 man/prim.Rd |only man/search_cover_ants.Rd | 9 man/search_cover_random.Rd | 1 man/search_cut_genetic.Rd | 5 man/search_tour_ants.Rd | 4 man/search_tour_chain2opt.Rd | 21 man/search_tour_genetic.Rd | 44 man/shave_cycle.Rd | 2 49 files changed, 2599 insertions(+), 1969 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the
'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi'
library. 'textshaping' is a low-level utility package mainly for
graphic devices that expands upon the font tool-set provided by the
'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between textshaping versions 1.0.1 dated 2025-05-01 and 1.0.2 dated 2025-09-01
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 10 +++++++++- R/lorem_text.R | 2 +- R/shape_text.R | 2 +- inst/doc/c_interface.Rmd | 4 ++-- inst/doc/c_interface.html | 13 +++++++------ man/get_font_features.Rd | 2 +- man/lorem_text.Rd | 2 +- man/text_width.Rd | 2 +- src/string_shape.cpp | 9 +++++---- src/string_shape.h | 19 +++++++++++-------- vignettes/c_interface.Rmd | 4 ++-- 13 files changed, 56 insertions(+), 43 deletions(-)
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] ,
Werner Stahel [ctb] , f.robftest, last,
p.scales, p.dnorm),
Andreas Ruckstuhl [ctb] , p.profileTraces,
p.res.2x),
Christian Keller [ctb] , p.tachoPlot),
Kjetil Halvorsen [ctb] , ecdf.ksCI),
Alain Hauser [ctb] , is.whole,
[...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-21 dated 2025-07-26 and 1.1-22 dated 2025-09-01
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/prettylab.R | 14 ++++++++------ TODO | 1 + inst/NEWS.Rd | 18 +++++++++++++----- man/eaxis.Rd | 3 ++- man/pretty10exp.Rd | 24 ++++++++++++++++-------- 7 files changed, 52 insertions(+), 32 deletions(-)
Title: Simulation and Likelihood Calculation of Phylogenetic
Comparative Models
Description: Phylogenetic comparative methods represent models of continuous trait
data associated with the tips of a phylogenetic tree. Examples of such models
are Gaussian continuous time branching stochastic processes such as Brownian
motion (BM) and Ornstein-Uhlenbeck (OU) processes, which regard the data at the
tips of the tree as an observed (final) state of a Markov process starting from
an initial state at the root and evolving along the branches of the tree. The
PCMBase R package provides a general framework for manipulating such models.
This framework consists of an application programming interface for specifying
data and model parameters, and efficient algorithms for simulating trait evolution
under a model and calculating the likelihood of model parameters for an assumed
model and trait data. The package implements a growing collection of models,
which currently includes BM, OU, BM/OU with jumps, two-speed OU as well as mixed
Gaussian models, in which different types of the above model [...truncated...]
Author: Venelin Mitov [aut, cre, cph] ,
Krzysztof Bartoszek [ctb],
Georgios Asimomitis [ctb],
Tanja Stadler [ths]
Maintainer: Venelin Mitov <vmitov@gmail.com>
Diff between PCMBase versions 1.2.14 dated 2024-03-15 and 1.2.15 dated 2025-09-01
DESCRIPTION | 8 MD5 | 36 R/PCM.R | 4 R/PCMTree.R | 4 build/vignette.rds |binary inst/doc/PCMBase.R | 28 inst/doc/PCMBase.html | 488 ++--- inst/doc/PCMCreateModel.R | 182 +- inst/doc/PCMCreateModel.html | 607 +++---- inst/doc/PCMParam.R | 4 inst/doc/PCMParam.html | 506 +++--- inst/doc/PCMTracePruning.R | 114 - inst/doc/PCMTracePruning.html | 3439 +++++++++++++++++++++-------------------- man/PCMColorPalette.Rd | 4 man/PCMOptions.Rd | 4 man/PCMParamType.Rd | 54 man/PCMTreeGetLabels.Rd | 10 man/PCMTreeInsertSingletons.Rd | 6 man/PCMTreeVCV.Rd | 4 19 files changed, 2808 insertions(+), 2694 deletions(-)
Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The
flagship function is 'ggMarginal()', which can be used to add marginal
histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre],
Christopher Baker [aut]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ggExtra versions 0.10.1 dated 2023-08-21 and 0.11.0 dated 2025-09-01
ggExtra-0.10.1/ggExtra/inst/examples |only ggExtra-0.10.1/ggExtra/vignettes/ggExtra_files |only ggExtra-0.11.0/ggExtra/DESCRIPTION | 7 ggExtra-0.11.0/ggExtra/MD5 | 53 - ggExtra-0.11.0/ggExtra/NEWS.md | 8 ggExtra-0.11.0/ggExtra/R/ggMarginal-MarginalPlot.R | 106 +- ggExtra-0.11.0/ggExtra/R/ggMarginal-helpers.R | 2 ggExtra-0.11.0/ggExtra/R/plotCount.R | 2 ggExtra-0.11.0/ggExtra/R/runExample.R | 12 ggExtra-0.11.0/ggExtra/R/zzz.R |only ggExtra-0.11.0/ggExtra/README.md | 8 ggExtra-0.11.0/ggExtra/build/vignette.rds |binary ggExtra-0.11.0/ggExtra/inst/doc/ggExtra.Rmd | 8 ggExtra-0.11.0/ggExtra/inst/doc/ggExtra.html | 811 ++++++++++++--------- ggExtra-0.11.0/ggExtra/inst/examples-shiny |only ggExtra-0.11.0/ggExtra/man/ggExtra-package.Rd | 58 - ggExtra-0.11.0/ggExtra/man/runExample.Rd | 8 ggExtra-0.11.0/ggExtra/vignettes/ggExtra.Rmd | 8 18 files changed, 614 insertions(+), 477 deletions(-)
Title: Interface to 'GeoNode' REST API
Description: Provides an interface to the 'GeoNode' API, allowing to upload and publish metadata and data in 'GeoNode'.
For more information about the 'GeoNode' API, see <https://geonode.org/>.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonode4R versions 0.1-1 dated 2024-05-20 and 0.1-2 dated 2025-09-01
DESCRIPTION | 13 MD5 | 20 - NEWS.md | 3 R/GeoNodeManager.R | 4 R/GeoNodeUtils.R | 4 R/GeoNodeVersion.R | 6 README.md | 2 man/GeoNodeManager.Rd | 834 +++++++++++++++++++++++++------------------------- man/GeoNodeUtils.Rd | 154 ++++----- man/GeoNodeVersion.Rd | 304 +++++++++--------- man/geonode4R.Rd | 2 11 files changed, 675 insertions(+), 671 deletions(-)
Title: Interface for 'Google Gemini' API
Description: Provides a comprehensive interface for Google Gemini API,
enabling users to access and utilize Gemini Large Language Model (LLM) functionalities directly from R.
This package facilitates seamless integration with Google Gemini, allowing for advanced language processing,
text generation, and other AI-driven capabilities within the R environment.
For more information, please visit <https://ai.google.dev/docs/gemini_api_overview>.
Author: Jinhwan Kim [aut, cre, cph] ,
Maciej Nasinski [ctb]
Maintainer: Jinhwan Kim <hwanistic@gmail.com>
Diff between gemini.R versions 0.16.0 dated 2025-07-22 and 0.17.2 dated 2025-09-01
gemini.R-0.16.0/gemini.R/NEWS.md |only gemini.R-0.16.0/gemini.R/R/gemini_searchR.R |only gemini.R-0.16.0/gemini.R/R/gen_image.R |only gemini.R-0.16.0/gemini.R/man/gemini_searchR.Rd |only gemini.R-0.16.0/gemini.R/man/gen_image.Rd |only gemini.R-0.17.2/gemini.R/DESCRIPTION | 10 gemini.R-0.17.2/gemini.R/LICENSE | 4 gemini.R-0.17.2/gemini.R/MD5 | 103 - gemini.R-0.17.2/gemini.R/NAMESPACE | 114 - gemini.R-0.17.2/gemini.R/R/countTokens.R | 224 +-- gemini.R-0.17.2/gemini.R/R/gemini.R | 368 +++--- gemini.R-0.17.2/gemini.R/R/gemini_audio.R | 556 ++++----- gemini.R-0.17.2/gemini.R/R/gemini_chat.R | 274 ++-- gemini.R-0.17.2/gemini.R/R/gemini_docs.R | 600 +++++----- gemini.R-0.17.2/gemini.R/R/gemini_garden.R | 164 +- gemini.R-0.17.2/gemini.R/R/gemini_image.R | 526 ++++---- gemini.R-0.17.2/gemini.R/R/gemini_narrative.R | 170 +- gemini.R-0.17.2/gemini.R/R/gemini_search.R | 252 ++-- gemini.R-0.17.2/gemini.R/R/gemini_structured.R | 224 +-- gemini.R-0.17.2/gemini.R/R/gemma.R |only gemini.R-0.17.2/gemini.R/R/gen_docs.R | 164 +- gemini.R-0.17.2/gemini.R/R/gen_tests.R | 212 +-- gemini.R-0.17.2/gemini.R/R/nano_banana.R |only gemini.R-0.17.2/gemini.R/R/setAPI.R | 98 - gemini.R-0.17.2/gemini.R/R/setEnv.R | 256 ++-- gemini.R-0.17.2/gemini.R/R/utils.R | 290 +++- gemini.R-0.17.2/gemini.R/R/vertex.R | 342 ++--- gemini.R-0.17.2/gemini.R/inst/rstudio/addins.dcf | 18 gemini.R-0.17.2/gemini.R/man/addHistory.Rd | 44 gemini.R-0.17.2/gemini.R/man/add_inline_data.Rd |only gemini.R-0.17.2/gemini.R/man/add_text.Rd |only gemini.R-0.17.2/gemini.R/man/countTokens.Rd | 146 +- gemini.R-0.17.2/gemini.R/man/gemini.Rd | 112 - gemini.R-0.17.2/gemini.R/man/gemini.vertex.Rd | 117 + gemini.R-0.17.2/gemini.R/man/gemini_audio.Rd | 114 - gemini.R-0.17.2/gemini.R/man/gemini_audio.vertex.Rd | 90 - gemini.R-0.17.2/gemini.R/man/gemini_chat.Rd | 128 +- gemini.R-0.17.2/gemini.R/man/gemini_docs.Rd | 105 - gemini.R-0.17.2/gemini.R/man/gemini_docs.vertex.Rd | 114 - gemini.R-0.17.2/gemini.R/man/gemini_garden.Rd | 92 - gemini.R-0.17.2/gemini.R/man/gemini_image.Rd | 126 +- gemini.R-0.17.2/gemini.R/man/gemini_image.vertex.Rd | 96 - gemini.R-0.17.2/gemini.R/man/gemini_narrative.Rd | 96 - gemini.R-0.17.2/gemini.R/man/gemini_request.Rd |only gemini.R-0.17.2/gemini.R/man/gemini_search.Rd | 104 - gemini.R-0.17.2/gemini.R/man/gemini_structured.Rd | 130 +- gemini.R-0.17.2/gemini.R/man/gemma.Rd |only gemini.R-0.17.2/gemini.R/man/gen_docs.Rd | 54 gemini.R-0.17.2/gemini.R/man/gen_tests.Rd | 56 gemini.R-0.17.2/gemini.R/man/init_body.Rd |only gemini.R-0.17.2/gemini.R/man/nano_banana.Rd |only gemini.R-0.17.2/gemini.R/man/read_image.Rd |only gemini.R-0.17.2/gemini.R/man/save_image.Rd |only gemini.R-0.17.2/gemini.R/man/setAPI.Rd | 60 - gemini.R-0.17.2/gemini.R/man/setEnv.Rd | 60 - gemini.R-0.17.2/gemini.R/man/token.vertex.Rd | 82 - gemini.R-0.17.2/gemini.R/man/trim.Rd | 36 gemini.R-0.17.2/gemini.R/man/validate_params.Rd | 82 - gemini.R-0.17.2/gemini.R/tests/testthat.R | 24 gemini.R-0.17.2/gemini.R/tests/testthat/test-gemini-prompt-isText.R | 6 60 files changed, 3605 insertions(+), 3438 deletions(-)
Title: Tools to Handle and Publish Metadata as 'Atom' XML Format
Description: Provides tools to read/write/publish metadata based on the 'Atom' XML syndication format. This includes
support of 'Dublin Core' XML implementation, and a client to API(s) implementing the 'AtomPub' - 'SWORD' API specification.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between atom4R versions 0.3-3 dated 2022-11-18 and 0.3-4 dated 2025-09-01
DESCRIPTION | 17 MD5 | 189 NEWS.md | 4 R/AtomAbstractObject.R | 14 R/AtomCategory.R | 2 R/AtomEntry.R | 6 R/AtomFeed.R | 6 R/AtomLink.R | 6 R/AtomNamespace.R | 4 R/AtomPerson.R | 18 R/AtomPubClient.R | 4 R/DCElement.R | 324 - R/DCEntry.R | 6 R/DCMIVocabulary.R | 4 R/SwordClient.R | 4 R/SwordDataverseClient.R | 4 R/SwordHalClient.R | 6 R/SwordServiceDocument.R | 6 R/atom4R.R | 3 R/atom4R_logger.R | 6 README.md | 9 inst/extdata/resources |only man/AtomAbstractObject.Rd | 14 man/AtomAuthor.Rd | 6 man/AtomCategory.Rd | 2 man/AtomContributor.Rd | 6 man/AtomEntry.Rd | 6 man/AtomFeed.Rd | 6 man/AtomLink.Rd | 6 man/AtomNamespace.Rd | 4 man/AtomPerson.Rd | 6 man/AtomPubClient.Rd | 4 man/DCAbstract.Rd | 192 man/DCAccessRights.Rd | 192 man/DCAccrualMethod.Rd | 192 man/DCAccrualPeriodicity.Rd | 192 man/DCAccrualPolicy.Rd | 192 man/DCAlternative.Rd | 192 man/DCAudience.Rd | 196 man/DCAvailable.Rd | 192 man/DCBibliographicCitation.Rd | 192 man/DCConformsTo.Rd | 192 man/DCContributor.Rd | 198 man/DCCoverage.Rd | 202 man/DCCreated.Rd | 192 man/DCCreator.Rd | 198 man/DCDate.Rd | 202 man/DCDateAccepted.Rd | 192 man/DCDateCopyrighted.Rd | 192 man/DCDateSubmitted.Rd | 192 man/DCDescription.Rd | 202 man/DCEducationalLevel.Rd | 192 man/DCElement.Rd | 6 man/DCEntry.Rd | 7722 ++++++++++++++--------------- man/DCExtent.Rd | 192 man/DCFormat.Rd | 196 man/DCHasPart.Rd | 198 man/DCHasVersion.Rd | 198 man/DCIdentifier.Rd | 202 man/DCInstructionalMethod.Rd | 192 man/DCIsPartOf.Rd | 198 man/DCIsReferencedBy.Rd | 198 man/DCIsReplacedBy.Rd | 198 man/DCIsRequiredBy.Rd | 198 man/DCIsVersionOf.Rd | 198 man/DCIssued.Rd | 192 man/DCLanguage.Rd | 198 man/DCLicense.Rd | 192 man/DCMIVocabulary.Rd | 194 man/DCMediator.Rd | 192 man/DCMedium.Rd | 192 man/DCModified.Rd | 192 man/DCProvenance.Rd | 192 man/DCPublisher.Rd | 198 man/DCReferences.Rd | 192 man/DCRelation.Rd | 202 man/DCReplaces.Rd | 192 man/DCRequires.Rd | 192 man/DCRights.Rd | 202 man/DCRightsHolder.Rd | 192 man/DCSource.Rd | 198 man/DCSpatial.Rd | 192 man/DCSubject.Rd | 198 man/DCTableOfContents.Rd | 192 man/DCTemporal.Rd | 192 man/DCTitle.Rd | 202 man/DCType.Rd | 198 man/DCValid.Rd | 192 man/SwordClient.Rd | 4 man/SwordDataverseClient.Rd | 4 man/SwordHalClient.Rd | 302 - man/SwordServiceDocument.Rd | 244 man/atom4R.Rd | 8 man/atom4RLogger.Rd | 6 tests/testthat/test_SwordDataverseClient.R | 1 95 files changed, 9774 insertions(+), 9757 deletions(-)
Title: Oncology Extension Package for ADaM in 'R' Asset Library
Description: Programming oncology specific Clinical Data Interchange Standards Consortium
(CDISC) compliant Analysis Data Model (ADaM) datasets in 'R'. ADaM datasets are a
mandatory part of any New Drug or Biologics License Application submitted to the
United States Food and Drug Administration (FDA). Analysis derivations are
implemented in accordance with the "Analysis Data Model Implementation Guide"
(CDISC Analysis Data Model Team (2021), <https://www.cdisc.org/standards/foundational/adam>).
The package is an extension package of the 'admiral' package.
Author: Stefan Bundfuss [aut, cre],
Amit Jain [aut],
Vinh Nguyen [aut],
Olga Starostecka [aut],
Kiran Peddamudium [aut],
Tomoyuki Namai [aut],
Ross Farrugia [aut],
Yirong Cao [ctb],
Ashwini Weber [ctb],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline LLC [...truncated...]
Maintainer: Stefan Bundfuss <stefan.bundfuss@roche.com>
Diff between admiralonco versions 1.2.0 dated 2025-01-27 and 1.3.0 dated 2025-09-01
admiralonco-1.2.0/admiralonco/vignettes/articles |only admiralonco-1.3.0/admiralonco/DESCRIPTION | 49 +----- admiralonco-1.3.0/admiralonco/MD5 | 45 +++--- admiralonco-1.3.0/admiralonco/NEWS.md | 9 + admiralonco-1.3.0/admiralonco/README.md | 19 ++ admiralonco-1.3.0/admiralonco/build/vignette.rds |binary admiralonco-1.3.0/admiralonco/inst/WORDLIST | 26 +++ admiralonco-1.3.0/admiralonco/inst/doc/admiralonco.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/adrs.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/adrs_basic.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/adrs_gcig.html | 110 +++++++-------- admiralonco-1.3.0/admiralonco/inst/doc/adrs_imwg.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/adrs_pcwg3.R |only admiralonco-1.3.0/admiralonco/inst/doc/adrs_pcwg3.Rmd |only admiralonco-1.3.0/admiralonco/inst/doc/adrs_pcwg3.html |only admiralonco-1.3.0/admiralonco/inst/doc/adtr.R | 4 admiralonco-1.3.0/admiralonco/inst/doc/adtr.Rmd | 6 admiralonco-1.3.0/admiralonco/inst/doc/adtr.html | 21 ++ admiralonco-1.3.0/admiralonco/inst/doc/adtte.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/irecist.html | 4 admiralonco-1.3.0/admiralonco/inst/doc/nactdt.html | 4 admiralonco-1.3.0/admiralonco/man/admiralonco-package.Rd | 21 -- admiralonco-1.3.0/admiralonco/man/figures/amgen_logo.png |only admiralonco-1.3.0/admiralonco/man/figures/bms_logo.png |only admiralonco-1.3.0/admiralonco/man/figures/gsk_logo.png |only admiralonco-1.3.0/admiralonco/man/figures/roche_logo.png |only admiralonco-1.3.0/admiralonco/vignettes/adrs_pcwg3.Rmd |only admiralonco-1.3.0/admiralonco/vignettes/adtr.Rmd | 6 28 files changed, 184 insertions(+), 160 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains
functions and classes to be used in conjunction with other
'tidymodels' packages for finding reasonable values of
hyper-parameters in models, pre-processing methods, and
post-processing steps.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tune versions 1.3.0 dated 2025-02-21 and 2.0.0 dated 2025-09-01
tune-1.3.0/tune/R/grid_code_paths.R |only tune-1.3.0/tune/R/param_set.workflows.R |only tune-1.3.0/tune/R/pull.R |only tune-1.3.0/tune/inst/test_objects.Rout |only tune-1.3.0/tune/man/extract_model.Rd |only tune-1.3.0/tune/man/parameters.workflow.Rd |only tune-1.3.0/tune/tests/testthat/_snaps/finalization.md |only tune-1.3.0/tune/tests/testthat/test-finalization.R |only tune-1.3.0/tune/tests/testthat/test-param_set.R |only tune-2.0.0/tune/DESCRIPTION | 38 tune-2.0.0/tune/LICENSE | 2 tune-2.0.0/tune/MD5 | 357 ++-- tune-2.0.0/tune/NAMESPACE | 23 tune-2.0.0/tune/NEWS.md | 37 tune-2.0.0/tune/R/0_imports.R | 121 + tune-2.0.0/tune/R/acquisition.R | 55 tune-2.0.0/tune/R/augment.R | 11 tune-2.0.0/tune/R/case_weights.R | 63 tune-2.0.0/tune/R/checks.R | 437 +++-- tune-2.0.0/tune/R/collect.R | 213 +- tune-2.0.0/tune/R/compat-vctrs-helpers.R | 12 tune-2.0.0/tune/R/compat-vctrs.R | 50 tune-2.0.0/tune/R/compute_metrics.R | 48 tune-2.0.0/tune/R/conf_mat_resampled.R | 63 tune-2.0.0/tune/R/control.R | 119 - tune-2.0.0/tune/R/coord_obs_pred.R | 17 tune-2.0.0/tune/R/data.R | 26 tune-2.0.0/tune/R/expo_decay.R | 2 tune-2.0.0/tune/R/extract.R | 21 tune-2.0.0/tune/R/filter_parameters.R | 54 tune-2.0.0/tune/R/finalize.R | 67 tune-2.0.0/tune/R/fit_best.R | 56 tune-2.0.0/tune/R/grid_helpers.R | 550 ------- tune-2.0.0/tune/R/grid_performance.R | 120 + tune-2.0.0/tune/R/handlers.R | 29 tune-2.0.0/tune/R/import-standalone-obj-type.R |only tune-2.0.0/tune/R/import-standalone-types-check.R |only tune-2.0.0/tune/R/int_pctl.R | 308 +--- tune-2.0.0/tune/R/iteration_results.R | 19 tune-2.0.0/tune/R/last_fit.R | 91 - tune-2.0.0/tune/R/load_ns.R | 22 tune-2.0.0/tune/R/logging.R | 757 +++++----- tune-2.0.0/tune/R/loop_over_all_stages-helpers.R |only tune-2.0.0/tune/R/loop_over_all_stages.R |only tune-2.0.0/tune/R/merge.R | 44 tune-2.0.0/tune/R/metric-selection.R | 164 +- tune-2.0.0/tune/R/min_grid.R | 86 - tune-2.0.0/tune/R/outcome-names.R | 20 tune-2.0.0/tune/R/parallel.R | 516 ++++++ tune-2.0.0/tune/R/plots.R | 245 ++- tune-2.0.0/tune/R/predict.R | 6 tune-2.0.0/tune/R/reexports.R | 1 tune-2.0.0/tune/R/resample.R | 69 tune-2.0.0/tune/R/resample_results.R | 18 tune-2.0.0/tune/R/schedule.R |only tune-2.0.0/tune/R/select_best.R | 105 - tune-2.0.0/tune/R/standalone-survival.R | 22 tune-2.0.0/tune/R/symbol.R | 12 tune-2.0.0/tune/R/tune_bayes.R | 460 +++--- tune-2.0.0/tune/R/tune_grid.R | 139 + tune-2.0.0/tune/R/tune_grid_loop.R |only tune-2.0.0/tune/R/tune_results.R | 80 - tune-2.0.0/tune/R/utils.R | 44 tune-2.0.0/tune/README.md | 4 tune-2.0.0/tune/data/example_ames_knn.RData |binary tune-2.0.0/tune/inst/WORDLIST | 25 tune-2.0.0/tune/inst/event_time_analysis.Rmd | 4 tune-2.0.0/tune/inst/regression_tests |only tune-2.0.0/tune/inst/test_objects.R | 142 - tune-2.0.0/tune/man/collect_predictions.Rd | 16 tune-2.0.0/tune/man/conf_mat_resampled.Rd | 8 tune-2.0.0/tune/man/coord_obs_pred.Rd | 3 tune-2.0.0/tune/man/dot-use_case_weights_with_yardstick.Rd | 4 tune-2.0.0/tune/man/example_ames_knn.Rd | 26 tune-2.0.0/tune/man/expo_decay.Rd | 2 tune-2.0.0/tune/man/extract-tune.Rd | 10 tune-2.0.0/tune/man/filter_parameters.Rd | 12 tune-2.0.0/tune/man/finalize_model.Rd | 8 tune-2.0.0/tune/man/fit_best.Rd | 10 tune-2.0.0/tune/man/fit_resamples.Rd | 18 tune-2.0.0/tune/man/int_pctl.tune_results.Rd | 42 tune-2.0.0/tune/man/internal-parallel.Rd |only tune-2.0.0/tune/man/last_fit.Rd | 12 tune-2.0.0/tune/man/merge.recipe.Rd | 18 tune-2.0.0/tune/man/min_grid.Rd | 19 tune-2.0.0/tune/man/outcome_names.Rd | 7 tune-2.0.0/tune/man/parallelism.Rd | 137 + tune-2.0.0/tune/man/schedule_grid.Rd |only tune-2.0.0/tune/man/tune-internal-functions.Rd | 9 tune-2.0.0/tune/man/tune_bayes.Rd | 21 tune-2.0.0/tune/man/tune_grid.Rd | 32 tune-2.0.0/tune/tests/spelling.R | 3 tune-2.0.0/tune/tests/testthat.R | 13 tune-2.0.0/tune/tests/testthat/Rplots.pdf |binary tune-2.0.0/tune/tests/testthat/_snaps/acquisition.md | 34 tune-2.0.0/tune/tests/testthat/_snaps/augment.md | 4 tune-2.0.0/tune/tests/testthat/_snaps/autoplot.md | 4 tune-2.0.0/tune/tests/testthat/_snaps/bayes.md | 270 --- tune-2.0.0/tune/tests/testthat/_snaps/case-weights.md | 4 tune-2.0.0/tune/tests/testthat/_snaps/censored-reg.md | 32 tune-2.0.0/tune/tests/testthat/_snaps/checks.md | 156 -- tune-2.0.0/tune/tests/testthat/_snaps/collect.md | 85 - tune-2.0.0/tune/tests/testthat/_snaps/compute_metrics.md | 2 tune-2.0.0/tune/tests/testthat/_snaps/conf-mat-resampled.md | 4 tune-2.0.0/tune/tests/testthat/_snaps/engine-parameters.md | 10 tune-2.0.0/tune/tests/testthat/_snaps/extract.md | 70 tune-2.0.0/tune/tests/testthat/_snaps/filter-parameters.md | 5 tune-2.0.0/tune/tests/testthat/_snaps/finalize.md |only tune-2.0.0/tune/tests/testthat/_snaps/fit_best.md | 4 tune-2.0.0/tune/tests/testthat/_snaps/grid.md | 46 tune-2.0.0/tune/tests/testthat/_snaps/int_pctl.md | 12 tune-2.0.0/tune/tests/testthat/_snaps/last-fit.md | 22 tune-2.0.0/tune/tests/testthat/_snaps/logging.md | 232 ++- tune-2.0.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-config-key.md |only tune-2.0.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-make-static.md |only tune-2.0.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-predict-all-types.md |only tune-2.0.0/tune/tests/testthat/_snaps/loop-over-all-stages-logging.md |only tune-2.0.0/tune/tests/testthat/_snaps/misc.md | 2 tune-2.0.0/tune/tests/testthat/_snaps/notes.md | 89 - tune-2.0.0/tune/tests/testthat/_snaps/parallel.md |only tune-2.0.0/tune/tests/testthat/_snaps/resample.md | 90 - tune-2.0.0/tune/tests/testthat/_snaps/select_best.md | 270 +-- tune-2.0.0/tune/tests/testthat/_snaps/utils.md |only tune-2.0.0/tune/tests/testthat/data/knn_gp.rds |binary tune-2.0.0/tune/tests/testthat/data/knn_grid.rds |binary tune-2.0.0/tune/tests/testthat/data/knn_results.rds |binary tune-2.0.0/tune/tests/testthat/data/knn_set.rds |binary tune-2.0.0/tune/tests/testthat/data/lm_bayes.rds |binary tune-2.0.0/tune/tests/testthat/data/lm_resamples.rds |binary tune-2.0.0/tune/tests/testthat/data/rcv_results.rds |binary tune-2.0.0/tune/tests/testthat/data/surv_boost_tree_res.rds |binary tune-2.0.0/tune/tests/testthat/data/svm_reg_results.rds |binary tune-2.0.0/tune/tests/testthat/data/svm_results.rds |binary tune-2.0.0/tune/tests/testthat/data/test_objects.RData |binary tune-2.0.0/tune/tests/testthat/helper-logging.R |only tune-2.0.0/tune/tests/testthat/helper-merge.R | 2 tune-2.0.0/tune/tests/testthat/helper-postprocessing.R |only tune-2.0.0/tune/tests/testthat/helper-predictions.R | 10 tune-2.0.0/tune/tests/testthat/helper-tune-package.R | 111 + tune-2.0.0/tune/tests/testthat/test-GP.R | 19 tune-2.0.0/tune/tests/testthat/test-acquisition.R | 110 - tune-2.0.0/tune/tests/testthat/test-augment.R | 31 tune-2.0.0/tune/tests/testthat/test-autoplot.R | 172 +- tune-2.0.0/tune/tests/testthat/test-bayes.R | 239 ++- tune-2.0.0/tune/tests/testthat/test-case-weights.R | 157 +- tune-2.0.0/tune/tests/testthat/test-censored-reg.R | 38 tune-2.0.0/tune/tests/testthat/test-checks.R | 304 ++-- tune-2.0.0/tune/tests/testthat/test-collect.R | 181 +- tune-2.0.0/tune/tests/testthat/test-compat-dplyr.R | 6 tune-2.0.0/tune/tests/testthat/test-compat-vctrs.R | 15 tune-2.0.0/tune/tests/testthat/test-compute_metrics.R | 51 tune-2.0.0/tune/tests/testthat/test-condense_control.R | 1 tune-2.0.0/tune/tests/testthat/test-conf-mat-resampled.R | 26 tune-2.0.0/tune/tests/testthat/test-engine-parameters.R | 44 tune-2.0.0/tune/tests/testthat/test-estimate.R | 26 tune-2.0.0/tune/tests/testthat/test-eval-time-args.R | 277 ++- tune-2.0.0/tune/tests/testthat/test-eval-time-single-selection.R | 29 tune-2.0.0/tune/tests/testthat/test-event-level.R | 9 tune-2.0.0/tune/tests/testthat/test-extract-helpers.R | 18 tune-2.0.0/tune/tests/testthat/test-extract.R | 143 + tune-2.0.0/tune/tests/testthat/test-filter-parameters.R | 137 + tune-2.0.0/tune/tests/testthat/test-finalize.R |only tune-2.0.0/tune/tests/testthat/test-fit_best.R | 66 tune-2.0.0/tune/tests/testthat/test-grid.R | 259 ++- tune-2.0.0/tune/tests/testthat/test-handler.R | 18 tune-2.0.0/tune/tests/testthat/test-int_pctl.R | 108 - tune-2.0.0/tune/tests/testthat/test-last-fit.R | 191 ++ tune-2.0.0/tune/tests/testthat/test-logging.R | 510 +++++- tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-config-key.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-data-subsets.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-make-static.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-predict-all-types.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-stages.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-train-post.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-helpers-update-fit.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-logging.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning-extract.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-no-tuning.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-or-tuning.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning-extract.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-prediction-only.R |only tune-2.0.0/tune/tests/testthat/test-loop-over-all-stages-row-wise.R |only tune-2.0.0/tune/tests/testthat/test-merge.R | 313 ++-- tune-2.0.0/tune/tests/testthat/test-metric-args.R | 62 tune-2.0.0/tune/tests/testthat/test-metric-single-selection.R | 21 tune-2.0.0/tune/tests/testthat/test-min-grid.R | 105 - tune-2.0.0/tune/tests/testthat/test-misc.R | 87 - tune-2.0.0/tune/tests/testthat/test-notes.R | 34 tune-2.0.0/tune/tests/testthat/test-outcome-names.R | 36 tune-2.0.0/tune/tests/testthat/test-parallel.R |only tune-2.0.0/tune/tests/testthat/test-performance.R | 11 tune-2.0.0/tune/tests/testthat/test-predictions.R | 75 tune-2.0.0/tune/tests/testthat/test-pretty.R | 6 tune-2.0.0/tune/tests/testthat/test-resample.R | 234 ++- tune-2.0.0/tune/tests/testthat/test-schedule.R |only tune-2.0.0/tune/tests/testthat/test-select_best.R | 321 ++-- tune-2.0.0/tune/tests/testthat/test-utils.R |only 199 files changed, 7621 insertions(+), 4863 deletions(-)
Title: Tools for Developing R Packages Interfacing with 'Stan'
Description: Provides various tools for developers of R packages interfacing
with 'Stan' <https://mc-stan.org>, including functions to set up the required
package structure, S3 generics and default methods to unify function naming
across 'Stan'-based R packages, and vignettes with recommendations for
developers.
Author: Jonah Gabry [aut, cre],
Ben Goodrich [aut],
Martin Lysy [aut],
Andrew Johnson [aut],
Hamada S. Badr [ctb],
Marco Colombo [ctb],
Stefan Siegert [ctb],
Trustees of Columbia University [cph]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between rstantools versions 2.4.0 dated 2024-01-31 and 2.5.0 dated 2025-09-01
DESCRIPTION | 10 ++--- MD5 | 34 +++++++++-------- NAMESPACE | 1 NEWS.md | 9 ++++ R/bayes_R2.R | 6 +-- R/loo-functions.R | 44 +++++++++++++++++++--- R/rstan_config.R | 13 +++++- R/rstantools-package.R | 3 - build/partial.rdb |only build/vignette.rds |binary inst/doc/developer-guidelines.html | 2 - inst/doc/minimal-rstan-package.R | 26 ++++++------- inst/doc/minimal-rstan-package.html | 66 +++++++++++++++++----------------- man/bayes_R2.Rd | 6 +-- man/loo-prediction.Rd | 18 +++++++-- man/rstan_create_package.Rd | 8 +++- tests/testthat/loo_pit.RDS |binary tests/testthat/loo_pit_discrete.RDS |only tests/testthat/test-default-methods.R | 16 +++++++- 19 files changed, 171 insertions(+), 91 deletions(-)
Title: Interface to Open Collaboration Services (OCS) REST API
Description: Provides an Interface to Open Collaboration Services 'OCS' (<https://www.open-collaboration-services.org/>) REST API.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between ocs4R versions 0.2-3 dated 2022-03-17 and 0.3 dated 2025-09-01
DESCRIPTION | 13 MD5 | 34 +- NEWS.md | 15 R/ocs4R.R | 13 R/ocs4R_logger.R | 60 +-- R/ocsApiSharingManager.R | 124 +++---- R/ocsApiUserProvisioningManager.R | 218 +++++------- R/ocsApiWebdavManager.R | 104 ++---- R/ocsManager.R | 155 +++------ R/ocsRequest.R | 40 +- README.md | 11 man/ocs4R.Rd | 16 man/ocs4RLogger.Rd | 168 +++++++++ man/ocsApiSharingManager.Rd | 313 +++++++++++++++--- man/ocsApiUserProvisioningManager.Rd | 594 +++++++++++++++++++++++++++++------ man/ocsApiWebdavManager.Rd | 262 ++++++++++++--- man/ocsManager.Rd | 239 +++++++++----- man/ocsRequest.Rd | 199 +++++++++++ 18 files changed, 1850 insertions(+), 728 deletions(-)
Title: Set of Tools to Compute Various Climate Indices
Description: Set of tools to compute metrics and indices for climate analysis.
The package provides functions to compute extreme indices, evaluate the
agreement between models and combine theses models into an ensemble. Multi-model
time series of climate indices can be computed either after averaging the 2-D
fields from different models provided they share a common grid or by combining
time series computed on the model native grid. Indices can be assigned weights
and/or combined to construct new indices. The package makes use of some of the
methods described in:
N. Manubens et al. (2018) <doi:10.1016/j.envsoft.2018.01.018>.
Author: BSC-CNS [aut, cph],
Nuria Perez-Zanon [aut] ,
An-Chi Ho [ctb],
Victoria Agudetse [cre],
Nicolau Manubens [ctb],
Alasdair Hunter [aut],
Louis-Philippe Caron [ctb],
Eva Rifa [ctb],
Ulrich Drepper [ctb],
David Bronaugh [ctb],
James Hiebert [ctb]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
This is a re-admission after prior archival of version 0.3.3 dated 2024-01-26
Diff between ClimProjDiags versions 0.3.3 dated 2024-01-26 and 0.3.4 dated 2025-09-01
DESCRIPTION | 34 +- MD5 | 37 +- NAMESPACE | 38 ++ R/ArrayToList.R | 5 R/Climdex.R | 1 R/DailyAno.R | 2 R/Extremes.R | 1 R/PCICtFunctions.R |only R/SeasonSelect.R | 1 R/Threshold.R | 1 R/WaveDuration.R | 1 README.md | 4 build/vignette.rds |binary inst/doc/anomaly_agreement.html | 473 ++++++++++++++++++++------------- inst/doc/diurnaltemp.html | 434 ++++++++++++++++++------------ inst/doc/extreme_indices.html | 565 ++++++++++++++++++++++++---------------- inst/doc/heatcoldwaves.html | 420 ++++++++++++++++++----------- man/ArrayToList.Rd | 6 man/as.PCICt.Rd |only src |only 20 files changed, 1250 insertions(+), 773 deletions(-)
Title: Bayesian Inference with Laplace Approximations and P-Splines
Description: Laplace approximations and penalized B-splines are combined
for fast Bayesian inference in latent Gaussian models. The routines can be
used to fit survival models, especially proportional hazards and promotion
time cure models (Gressani, O. and Lambert, P. (2018)
<doi:10.1016/j.csda.2018.02.007>). The Laplace-P-spline methodology can also
be implemented for inference in (generalized) additive models
(Gressani, O. and Lambert, P. (2021) <doi:10.1016/j.csda.2020.107088>).
See the associated website for more information and examples.
Author: Oswaldo Gressani [aut, cre] ,
Philippe Lambert [aut, ths]
Maintainer: Oswaldo Gressani <oswaldo_gressani@hotmail.fr>
Diff between blapsr versions 0.6.1 dated 2022-08-20 and 0.7.0 dated 2025-09-01
DESCRIPTION | 10 +-- MD5 | 24 +++---- NEWS.md | 5 + R/coxlps.R | 2 R/curelps.R | 4 - README.md | 5 - build/vignette.rds |binary inst/CITATION | 31 +-------- inst/COPYRIGHTS | 2 inst/doc/blapsr-vignette.R | 2 inst/doc/blapsr-vignette.html | 136 +++++++++++++++++++++--------------------- man/coxlps.Rd | 2 man/curelps.Rd | 4 - 13 files changed, 109 insertions(+), 118 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.5.0 dated 2024-09-17 and 0.5.1 dated 2025-09-01
fabletools-0.5.0/fabletools/inst/WORDLIST |only fabletools-0.5.0/fabletools/tests/testthat/Rplots.pdf |only fabletools-0.5.0/fabletools/tests/testthat/test-spelling.R |only fabletools-0.5.1/fabletools/DESCRIPTION | 14 +-- fabletools-0.5.1/fabletools/MD5 | 29 +++--- fabletools-0.5.1/fabletools/NAMESPACE | 1 fabletools-0.5.1/fabletools/NEWS.md | 11 ++ fabletools-0.5.1/fabletools/R/accuracy.R | 2 fabletools-0.5.1/fabletools/R/forecast.R | 2 fabletools-0.5.1/fabletools/R/generate.R | 9 +- fabletools-0.5.1/fabletools/R/plot.R | 35 ++++++-- fabletools-0.5.1/fabletools/README.md | 2 fabletools-0.5.1/fabletools/build/stage23.rdb |binary fabletools-0.5.1/fabletools/build/vignette.rds |binary fabletools-0.5.1/fabletools/inst/doc/extension_models.R | 54 ++++++------- fabletools-0.5.1/fabletools/inst/doc/extension_models.html | 13 +-- fabletools-0.5.1/fabletools/man/forecast.Rd | 2 17 files changed, 104 insertions(+), 70 deletions(-)
Title: Compute and Plot Zonohedra from Vector Generators
Description: Computes a zonohedron from real vector generators. The package also computes zonogons (2D zonotopes) and zonosegs (1D zonotopes). An elementary S3 class for matroids is included, which supports matroids with rank 3, 2, and 1. Optimization methods are taken from Heckbert (1985) <https://www.cs.cmu.edu/~ph/zono.ps.gz>.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between zonohedra versions 0.5-0 dated 2025-08-28 and 0.6-0 dated 2025-09-01
zonohedra-0.5-0/zonohedra/README.md |only zonohedra-0.5-0/zonohedra/vignettes/PMC1085499.nbib |only zonohedra-0.5-0/zonohedra/vignettes/pericles_1520637846.bib |only zonohedra-0.6-0/zonohedra/DESCRIPTION | 8 zonohedra-0.6-0/zonohedra/MD5 | 37 +- zonohedra-0.6-0/zonohedra/NEWS.md | 4 zonohedra-0.6-0/zonohedra/R/matroid.R | 5 zonohedra-0.6-0/zonohedra/R/utils.R | 71 ++++ zonohedra-0.6-0/zonohedra/R/zonogon.R | 2 zonohedra-0.6-0/zonohedra/R/zonohedron.R | 178 +++++++++--- zonohedra-0.6-0/zonohedra/inst/doc/matroids.html | 6 zonohedra-0.6-0/zonohedra/inst/doc/raytrace.html | 14 zonohedra-0.6-0/zonohedra/inst/doc/transitions.html | 14 zonohedra-0.6-0/zonohedra/inst/doc/zonohedra-guide.Rmd | 2 zonohedra-0.6-0/zonohedra/inst/doc/zonohedra-guide.html | 25 - zonohedra-0.6-0/zonohedra/inst/doc/zonotopes.html | 8 zonohedra-0.6-0/zonohedra/src/flVecMap.cpp | 21 - zonohedra-0.6-0/zonohedra/src/flVecMap.h | 10 zonohedra-0.6-0/zonohedra/src/nanotimer_windows.h | 11 zonohedra-0.6-0/zonohedra/src/zonohedron.c | 43 +- zonohedra-0.6-0/zonohedra/vignettes/zonohedra-guide.Rmd | 2 21 files changed, 331 insertions(+), 130 deletions(-)
Title: Analyses of Text using Transformers Models from HuggingFace,
Natural Language Processing and Machine Learning
Description: Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] ,
Salvatore Giorgi [aut] ,
Andrew Schwartz [aut]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 1.6 dated 2025-07-22 and 1.7.0 dated 2025-09-01
text-1.6/text/inst/doc/huggingface_in_r_extended_installation_guide.R |only text-1.6/text/inst/doc/huggingface_in_r_extended_installation_guide.Rmd |only text-1.6/text/inst/doc/huggingface_in_r_extended_installation_guide.html |only text-1.6/text/vignettes/huggingface_in_r_extended_installation_guide.Rmd |only text-1.7.0/text/DESCRIPTION | 6 text-1.7.0/text/MD5 | 68 - text-1.7.0/text/NEWS.md | 5 text-1.7.0/text/R/0_0_2_textDiagnostics.R | 12 text-1.7.0/text/R/0_0_text_install.R | 375 ++++++++-- text-1.7.0/text/R/1_1_textEmbed.R | 6 text-1.7.0/text/R/2_4_0_textPredict_Assess_Classify.R | 2 text-1.7.0/text/R/2_4_1_textPredictTextTrained.R | 38 - text-1.7.0/text/R/2_4_2_textPredictImplicitMotives.R | 2 text-1.7.0/text/R/zzz.R | 4 text-1.7.0/text/README.md | 13 text-1.7.0/text/build/vignette.rds |binary text-1.7.0/text/inst/doc/LBAM.R | 80 +- text-1.7.0/text/inst/doc/LBAM.Rmd | 102 +- text-1.7.0/text/inst/doc/LBAM.html | 54 + text-1.7.0/text/inst/doc/ext_install_guide.R |only text-1.7.0/text/inst/doc/ext_install_guide.Rmd |only text-1.7.0/text/inst/doc/ext_install_guide.html |only text-1.7.0/text/inst/doc/huggingface_in_r.R | 2 text-1.7.0/text/inst/doc/huggingface_in_r.Rmd | 2 text-1.7.0/text/inst/doc/huggingface_in_r.html | 2 text-1.7.0/text/inst/doc/pre_registration_and_transformers.Rmd | 2 text-1.7.0/text/inst/doc/pre_registration_and_transformers.html | 2 text-1.7.0/text/inst/doc/singularity_transformers_container.Rmd | 6 text-1.7.0/text/inst/doc/singularity_transformers_container.html | 6 text-1.7.0/text/inst/doc/text.Rmd | 4 text-1.7.0/text/inst/doc/text.html | 4 text-1.7.0/text/inst/extdata/The_L-BAM_Library.csv | 282 +++---- text-1.7.0/text/man/textrpp_install.Rd | 6 text-1.7.0/text/vignettes/LBAM.Rmd | 102 +- text-1.7.0/text/vignettes/ext_install_guide.Rmd |only text-1.7.0/text/vignettes/huggingface_in_r.Rmd | 2 text-1.7.0/text/vignettes/pre_registration_and_transformers.Rmd | 2 text-1.7.0/text/vignettes/singularity_transformers_container.Rmd | 6 text-1.7.0/text/vignettes/text.Rmd | 4 39 files changed, 793 insertions(+), 408 deletions(-)
Title: Functions to Scrape Rugby Data
Description: Provides a set of functions to scrape and analyze rugby data.
Supports competitions including the National Rugby League, New South Wales Cup,
Queensland Cup, Super League, and various representative and women's competitions.
Includes functions to fetch player statistics, match results, ladders, venues, and coaching data.
Designed to assist analysts, fans, and researchers in exploring historical and current rugby league data.
See Woods et al. (2017) <doi:10.1123/ijspp.2016-0187> for an example of rugby league performance analysis methodology.
Author: Daniel Tomaro [aut, cre]
Maintainer: Daniel Tomaro <danieltomaro@icloud.com>
Diff between nrlR versions 0.1.0 dated 2025-07-09 and 0.1.1 dated 2025-09-01
DESCRIPTION | 16 - MD5 | 16 - NAMESPACE | 2 NEWS.md | 3 R/fetch_injuries_suspensions.R |only R/fetch_player_stats.R | 178 ++++++++++------ README.md | 294 +++++++++++++++++++++++---- man/fetch_injuries_suspensions.Rd |only man/fetch_injuries_suspensions_zerotackle.Rd |only tests/testthat/test-injuries-suspensions.R |only tests/testthat/test-player-stats.R | 27 +- 11 files changed, 404 insertions(+), 132 deletions(-)
Title: Machine Learning Forest Simulator
Description: Climate-sensitive, single-tree forest simulator based on
data-driven machine learning. It simulates the main forest processes—
radial growth, height growth, mortality, crown recession, regeneration,
and harvesting—so users can assess stand development under climate and
management scenarios. The height model is described by Skudnik and
Jevšenak (2022) <doi:10.1016/j.foreco.2022.120017>, the basal-area
increment model by Jevšenak and Skudnik (2021) <doi:10.1016/j.foreco.2020.118601>,
and an overview of the MLFS package, workflow, and applications is
provided by Jevšenak, Arnič, Krajnc, and Skudnik (2023), Ecological
Informatics <doi:10.1016/j.ecoinf.2023.102115>.
Author: Jernej Jevsenak [aut, cre, cph]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between MLFS versions 0.4.2 dated 2022-04-20 and 0.4.3 dated 2025-09-01
DESCRIPTION | 47 +- MD5 | 128 ++--- NAMESPACE | 3 NEWS.md | 22 R/BAI_modul.R | 106 +++- R/BAI_modul_halfPeriod.R | 95 +++- R/MLFS.R | 61 ++ R/crown_modul.R | 9 R/crown_modul_halfPeriod.R | 9 R/data_tariffs.R | 11 R/height_modul.R | 9 R/height_modul_halfPeriod.R | 16 R/ingrowth_modul.R | 2 R/mortality_modul.R | 95 +++- R/volume_tariffs.R | 78 +++ R/volume_tariffs_halfPeriod.R | 97 ++++ data/data_tariffs.rda |binary inst/CITATION | 27 - man/BAI_prediction.Rd | 182 ++++---- man/BAI_prediction_halfPeriod.Rd | 48 +- man/MLFS.Rd | 696 +++++++++++++++---------------- man/add_stand_variables.Rd | 52 +- man/add_stand_variables_halfPeriod.Rd | 34 - man/calculate_BAL.Rd | 54 +- man/calculate_BAL_halfPeriod.Rd | 34 - man/crownHeight_prediction.Rd | 168 +++---- man/crownHeight_prediction_halfPeriod.Rd | 44 - man/data_BAI.Rd | 92 ++-- man/data_NFI.Rd | 56 +- man/data_climate.Rd | 46 +- man/data_final_cut_weights.Rd | 48 +- man/data_ingrowth.Rd | 62 +- man/data_mortality.Rd | 90 ++-- man/data_site.Rd | 46 +- man/data_tariffs.Rd | 45 +- man/data_thinning_weights.Rd | 48 +- man/data_tree_heights.Rd | 56 +- man/data_v1.Rd | 70 +-- man/data_v2.Rd | 68 +-- man/data_v3.Rd | 78 +-- man/data_v4.Rd | 88 +-- man/data_v5.Rd | 60 +- man/data_v6.Rd | 98 ++-- man/df_volume_parameters.Rd | 66 +- man/form_factors.Rd | 42 - man/height_prediction.Rd | 160 +++---- man/height_prediction_halfPeriod.Rd | 50 +- man/ingrowth_parameter_list.Rd | 44 - man/ingrowth_table.Rd | 46 +- man/max_size_data.Rd | 42 - man/measurement_thresholds.Rd | 40 - man/predict_ingrowth.Rd | 184 ++++---- man/predict_mortality.Rd | 286 ++++++------ man/simulate_harvesting.Rd | 210 ++++----- man/transform_data.Rd | 32 - man/volume_form_factors.Rd | 84 +-- man/volume_form_factors_halfPeriod.Rd | 44 - man/volume_functions.Rd | 60 +- man/volume_functions_halfPeriod.Rd | 32 - man/volume_merchantable.Rd | 24 - man/volume_merchantable_halfPeriod.Rd | 34 - man/volume_tariffs.Rd | 50 +- man/volume_tariffs_halfPeriod.Rd | 32 - man/volume_whole_tree.Rd | 30 - man/volume_whole_tree_halfPeriod.Rd | 32 - 65 files changed, 2659 insertions(+), 2143 deletions(-)
Title: Factor Importance Ranking and Selection using Total Indices
Description: A model-independent factor importance ranking and selection procedure based on total Sobol' indices. Please see Huang and Joseph (2025) <doi:10.1080/00401706.2025.2483531>. This research is supported by U.S. National Science Foundation grants DMS-2310637 and DMREF-1921873.
Author: Chaofan Huang [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Chaofan Huang <chaofan.huang@gatech.edu>
Diff between first versions 2.0 dated 2025-05-26 and 2.1 dated 2025-09-01
DESCRIPTION | 6 - MD5 | 7 - NAMESPACE | 1 R/first.R | 219 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ man/first.rank.Rd |only 5 files changed, 227 insertions(+), 6 deletions(-)
Title: Data and Code for Financial Accounting Research
Description: Handy functions and data to support a course book for accounting research.
Gow, Ian D. and Tongqing Ding (2024) 'Empirical Research in Accounting: Tools and Methods' <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>
Diff between farr versions 0.3.0 dated 2024-02-28 and 0.3.2 dated 2025-09-01
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 9 ++++++++- R/data.R | 4 ++-- R/get_event_cum_rets.R | 8 ++++---- R/get_event_cum_rets_mth.R | 8 ++++---- R/get_event_dates.R | 6 +++--- R/get_event_rets.R | 22 +++++++++++----------- R/get_me_breakpoints.R | 4 ++-- R/get_size_rets_monthly.R | 20 ++++++++++---------- README.md | 1 + build/partial.rdb |binary data/gvkey_ciks.rda |binary man/gvkey_ciks.Rd | 2 +- man/state_hq.Rd | 2 +- 15 files changed, 67 insertions(+), 59 deletions(-)
Title: Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit
Description: Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.
Author: Wei Cui [aut, cre, cph]
Maintainer: Wei Cui <m2c.w@outlook.com>
Diff between easybio versions 1.2.1 dated 2025-08-30 and 1.2.2 dated 2025-09-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/easybio-package.R | 2 +- inst/doc/example-sc-seq-workflow.html | 6 +++--- inst/doc/example_limma.html | 4 ++-- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Analyzing Wildlife Data with Detection Error
Description: Models for analyzing site occupancy and count data models
with detection error, including
single-visit based models (Lele et al. 2012 <doi:10.1093/jpe/rtr042>,
Moreno et al. 2010 <doi:10.1890/09-1073.1>,
Solymos et al. 2012 <doi:10.1002/env.1149>,
Denes et al. 2016 <doi:10.1111/1365-2664.12818>),
conditional distance sampling and time-removal models (QPAD)
(Solymos et al. 2013 <doi:10.1111/2041-210X.12106>,
Solymos et al. 2018 <doi:10.1650/CONDOR-18-32.1>),
and single bin QPAD (SQPAD) models
(Lele & Solymos 2025).
Package development was supported by the
Alberta Biodiversity Monitoring Institute
and the Boreal Avian Modelling Project.
Author: Peter Solymos [aut, cre] ,
Monica Moreno [aut],
Subhash R. Lele [aut],
Steven L. Van Wilgenburg [ctb]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between detect versions 0.4-6 dated 2023-03-08 and 0.5-0 dated 2025-09-01
DESCRIPTION | 45 ++++++++++++++++++++++++++++++++++++--------- MD5 | 24 +++++++++++++++--------- NAMESPACE | 13 ++++++++++++- R/load_BAM_QPAD.R | 4 ++-- R/sqpad.R |only R/svabu.fit.R | 2 +- R/svabu_nb.fit.R | 2 +- data/josm.rda |only data/paired.rda |only inst/WORDLIST | 14 ++++++++++++++ man/datocc.Rd | 2 +- man/detect-package.Rd | 4 ++-- man/josm.Rd |only man/paired.Rd |only man/sqpad.Rd |only man/svocc.Rd | 2 +- 16 files changed, 85 insertions(+), 27 deletions(-)
Title: Fitting Deep Distributional Regression
Description: Allows for the specification of semi-structured deep distributional regression models which are fitted in a neural network as
proposed by Ruegamer et al. (2023) <doi:10.18637/jss.v105.i02>.
Predictors can be modeled using structured (penalized) linear effects, structured non-linear effects or using an unstructured deep network model.
Author: David Ruegamer [aut, cre],
Christopher Marquardt [ctb],
Laetitia Frost [ctb],
Florian Pfisterer [ctb],
Philipp Baumann [ctb],
Chris Kolb [ctb],
Lucas Kook [ctb]
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between deepregression versions 2.3.0 dated 2025-08-24 and 2.3.1 dated 2025-09-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/python/utils/types.py | 25 ++++++++++++++++--------- 3 files changed, 21 insertions(+), 14 deletions(-)
More information about deepregression at CRAN
Permanent link
Title: Orthogonal Nonlinear Least-Squares Regression
Description: Fits two-dimensional data by means of orthogonal nonlinear least-squares using Levenberg-Marquardt minimization and provides functionality for fit diagnostics and plotting. Delivers the same results as the 'ODRPACK' Fortran implementation described in Boggs et al. (1989) <doi:10.1145/76909.76913>, but is implemented in pure R.
Author: Andrej-Nikolai Spiess [aut, cre]
Maintainer: Andrej-Nikolai Spiess <draspiess@gmail.com>
Diff between onls versions 0.1-3 dated 2025-08-19 and 0.1-4 dated 2025-09-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 +++++- inst/doc/onls.pdf |binary man/NIST.Rd | 2 +- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: GeoServer REST API R Interface
Description: Provides an R interface to the GeoServer REST API, allowing to upload
and publish data in a GeoServer web-application and expose data to OGC Web-Services.
The package currently supports all CRUD (Create,Read,Update,Delete) operations
on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes,
layers, styles, as well as vector data upload operations. For more information about
the GeoServer REST API, see <https://docs.geoserver.org/stable/en/user/rest/>.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geosapi versions 0.7-1 dated 2024-03-11 and 0.7-2 dated 2025-09-01
DESCRIPTION | 13 MD5 | 200 ++-- NEWS.md | 4 R/GSAbstractCoverageStore.R | 8 R/GSAbstractDBDataStore.R | 6 R/GSAbstractDataStore.R | 8 R/GSAbstractStore.R | 8 R/GSArcGridCoverageStore.R | 6 R/GSCoverage.R | 10 R/GSCoverageBand.R | 10 R/GSCoverageStoreManager.R | 4 R/GSCoverageView.R | 10 R/GSDatastoreManager.R | 4 R/GSDimension.R | 8 R/GSFeatureDimension.R | 10 R/GSFeatureType.R | 10 R/GSGeoPackageDataStore.R | 6 R/GSGeoTIFFCoverageStore.R | 6 R/GSImageMosaicCoverageStore.R | 6 R/GSInputCoverageBand.R | 10 R/GSLayer.R | 10 R/GSLayerGroup.R | 10 R/GSLayerManager.R | 6 R/GSManager.R | 4 R/GSMetadataLink.R | 10 R/GSMonitorManager.R | 6 R/GSNamespace.R | 8 R/GSNamespaceManager.R | 6 R/GSOracleNGDataStore.R | 6 R/GSPostGISDataStore.R | 6 R/GSPublishable.R | 10 R/GSRESTEntrySet.R | 8 R/GSRESTResource.R | 10 R/GSResource.R | 8 R/GSServiceManager.R | 4 R/GSServiceSettings.R | 10 R/GSShapefileDataStore.R | 6 R/GSShapefileDirectoryDataStore.R | 6 R/GSShinyMonitor.R | 4 R/GSStyle.R | 10 R/GSStyleManager.R | 8 R/GSUtils.R | 6 R/GSVersion.R | 6 R/GSVirtualTable.R | 10 R/GSVirtualTableGeometry.R | 10 R/GSVirtualTableParameter.R | 10 R/GSWorkspace.R | 10 R/GSWorkspaceManager.R | 6 R/GSWorkspaceSettings.R | 10 R/GSWorldImageCoverageStore.R | 6 R/geosapi.R | 3 README.md | 4 build/vignette.rds |binary inst/doc/geosapi.html | 302 +++---- man/GSAbstractCoverageStore.Rd | 288 +++--- man/GSAbstractDBDataStore.Rd | 6 man/GSAbstractDataStore.Rd | 422 ++++----- man/GSAbstractStore.Rd | 368 ++++---- man/GSArcGridCoverageStore.Rd | 210 ++-- man/GSCoverage.Rd | 330 +++---- man/GSCoverageBand.Rd | 516 +++++------ man/GSCoverageStoreManager.Rd | 1198 +++++++++++++-------------- man/GSCoverageView.Rd | 460 +++++----- man/GSDataStoreManager.Rd | 1506 +++++++++++++++++------------------ man/GSDimension.Rd | 8 man/GSFeatureDimension.Rd | 296 +++--- man/GSFeatureType.Rd | 8 man/GSGeoPackageDataStore.Rd | 6 man/GSGeoTIFFCoverageStore.Rd | 210 ++-- man/GSImageMosaicCoverageStore.Rd | 210 ++-- man/GSInputCoverageBand.Rd | 298 +++--- man/GSLayer.Rd | 16 man/GSLayerGroup.Rd | 8 man/GSLayerManager.Rd | 654 +++++++-------- man/GSManager.Rd | 4 man/GSMetadataLink.Rd | 8 man/GSMonitorManager.Rd | 202 ++-- man/GSNamespace.Rd | 8 man/GSNamespaceManager.Rd | 4 man/GSOracleNGDataStore.Rd | 6 man/GSPostGISDataStore.Rd | 6 man/GSPublishable.Rd | 308 +++---- man/GSRESTEntrySet.Rd | 8 man/GSRESTResource.Rd | 10 man/GSResource.Rd | 8 man/GSServiceManager.Rd | 4 man/GSServiceSettings.Rd | 8 man/GSShapefileDataStore.Rd | 6 man/GSShapefileDirectoryDataStore.Rd | 6 man/GSShinyMonitor.Rd | 4 man/GSStyleManager.Rd | 6 man/GSUtils.Rd | 4 man/GSVersion.Rd | 4 man/GSVirtualTable.Rd | 8 man/GSVirtualTableGeometry.Rd | 8 man/GSVirtualTableParameter.Rd | 8 man/GSWorkspace.Rd | 8 man/GSWorkspaceManager.Rd | 4 man/GSWorkspaceSettings.Rd | 8 man/GSWorldImageCoverageStore.Rd | 210 ++-- man/geosapi.Rd | 10 101 files changed, 4417 insertions(+), 4365 deletions(-)
Title: Interface to 'D4Science' 'StorageHub' API
Description: Provides an interface to 'D4Science' 'StorageHub' API (<https://dev.d4science.org/>). Allows to get user profile, and perform
actions over the 'StorageHub' (workspace) including creation of folders, files management (upload/update/deletion/sharing), and listing of
stored resources.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between d4storagehub4R versions 0.4-4 dated 2024-04-15 and 0.4-5 dated 2025-09-01
DESCRIPTION | 11 MD5 | 14 NEWS.md | 4 R/StoragehubManager.R | 2 R/d4storagehub4R_logger.R | 6 README.md | 2 man/StoragehubManager.Rd | 1232 ++++++++++++++++++++++---------------------- man/d4storagehub4RLogger.Rd | 382 ++++++------- 8 files changed, 829 insertions(+), 824 deletions(-)
More information about d4storagehub4R at CRAN
Permanent link
Title: Fast Covariance Estimation for Sparse Functional Data
Description: We implement the Fast Covariance Estimation for
Sparse Functional Data paper published in Statistics and Computing <doi: 10.1007/s11222-017-9744-8>.
Author: Cai Li [aut, cre],
Luo Xiao [aut],
William Checkley [aut],
Ciprian Crainiceanu [aut]
Maintainer: Cai Li <cai.li.stats@gmail.com>
Diff between face versions 0.1-7 dated 2022-07-18 and 0.1-8 dated 2025-09-01
DESCRIPTION | 24 ++++++++++++++++++++---- MD5 | 16 ++++++++-------- R/face.sparse.inner.r | 4 ++-- R/predict.face.sparse.r | 22 ++++++++++++++-------- build/partial.rdb |binary man/face-package.Rd | 4 ++-- man/face.sparse.Rd | 2 +- man/predict.face.sparse.Rd | 2 +- man/pspline.Rd | 2 +- 9 files changed, 49 insertions(+), 27 deletions(-)