Title: Simulation Education
Description: Contains various functions to be used for simulation education,
including simple Monte Carlo simulation functions, queueing simulation
functions, variate generation functions capable of producing independent
streams and antithetic variates, functions for illustrating random variate
generation for various discrete and continuous distributions, and functions
to compute time-persistent statistics. Also contains functions for
visualizing: event-driven details of a single-server queue model; a Lehmer
random number generator; variate generation via acceptance-rejection; and
of generating a non-homogeneous Poisson process via thinning. Also
contains two queueing data sets (one fabricated, one real-world) to
facilitate input modeling. More details on the use of these functions can
be found in Lawson and Leemis (2015) <doi:10.1109/WSC.2017.8248124>, in
Kudlay, Lawson, and Leemis (2020) <doi:10.1109/WSC48552.2020.9384010>, and
in Lawson and Leemis (2021) <doi:10.1109/WSC52266.2 [...truncated...]
Author: Barry Lawson [aut, cre, cph],
Larry Leemis [aut],
Vadim Kudlay [aut]
Maintainer: Barry Lawson <blawson@bates.edu>
Diff between simEd versions 2.0.1 dated 2023-11-26 and 2.0.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 50 +++++++++++++++++++++++++------------------------- NEWS.md | 3 +++ R/generators.R | 2 +- R/simEd-package.R | 4 ++-- build/partial.rdb |binary man/msq.Rd | 2 +- man/simEd-package.Rd | 13 ++++++++++++- man/ssq.Rd | 2 +- man/ssqvis.Rd | 2 +- man/vbeta.Rd | 8 ++++---- man/vbinom.Rd | 8 ++++---- man/vcauchy.Rd | 8 ++++---- man/vchisq.Rd | 8 ++++---- man/vexp.Rd | 8 ++++---- man/vfd.Rd | 8 ++++---- man/vgamma.Rd | 8 ++++---- man/vgeom.Rd | 8 ++++---- man/vlnorm.Rd | 8 ++++---- man/vlogis.Rd | 8 ++++---- man/vnbinom.Rd | 8 ++++---- man/vnorm.Rd | 8 ++++---- man/vpois.Rd | 8 ++++---- man/vt.Rd | 8 ++++---- man/vunif.Rd | 8 ++++---- man/vweibull.Rd | 8 ++++---- 26 files changed, 114 insertions(+), 100 deletions(-)
Title: Origin Estimation for Propagation Processes on Complex Networks
Description: Performs network-based source estimation. Different approaches are available: effective distance median, recursive backtracking, and centrality-based source estimation. Additionally, we provide public transportation network data as well as methods for data preparation, source estimation performance analysis and visualization.
Author: Juliane Manitz [aut, cre],
Jonas Harbering [ctb],
Jun Li [ctb]
Maintainer: Juliane Manitz <r@manitz.org>
Diff between NetOrigin versions 1.1-6 dated 2023-09-04 and 1.1-7 dated 2025-09-02
DESCRIPTION | 8 +- MD5 | 20 ++--- R/0_helper_net.r | 194 ++++++++++++++++++++++++------------------------- R/NetOrigin.r | 2 R/origin_helper.r | 6 - R/origin_methods.r | 2 man/NetOrigin.Rd | 8 ++ man/analyze_ptn.Rd | 2 man/origin-methods.Rd | 6 - man/origin_multiple.Rd | 2 man/plot_ptn.Rd | 4 - 11 files changed, 131 insertions(+), 123 deletions(-)
Title: Browse Over Longitudinal Data Graphically and Analytically in R
Description: Provides a framework of tools to summarise, visualise, and explore
longitudinal data. It builds upon the tidy time series data frames used in the
'tsibble' package, and is designed to integrate within the 'tidyverse', and
'tidyverts' (for time series) ecosystems. The methods implemented include
calculating features for understanding longitudinal data, including
calculating summary statistics such as quantiles, medians, and numeric ranges,
sampling individual series, identifying individual series representative of a
group, and extending the facet system in 'ggplot2' to facilitate exploration of samples of data. These methods are
fully described in the paper "brolgar: An R package to Browse Over
Longitudinal Data Graphically and Analytically in R", Nicholas Tierney,
Dianne Cook, Tania Prvan (2020) <doi:10.32614/RJ-2022-023>.
Author: Nicholas Tierney [aut, cre] ,
Di Cook [aut] ,
Tania Prvan [aut],
Stuart Lee [ctb],
Earo Wang [ctb]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between brolgar versions 1.0.1 dated 2024-05-10 and 1.0.2 dated 2025-09-02
DESCRIPTION | 19 + MD5 | 142 +++++++------- NEWS.md | 5 R/b_summaries.R | 90 ++++----- R/brolgar-package.R | 31 +-- R/data-pisa.R | 60 +++--- R/data-wages-ts.R | 33 +-- R/data-world-height.R | 42 ++-- R/facet-sample.R | 96 ++++------ R/facet-strata.R | 112 +++++------ R/features.R | 68 +++---- R/index-helpers.R | 61 +++--- R/key_slope.R | 70 +++---- R/keys_near.R | 127 ++++++------- R/monotonics.R | 64 +++--- R/n-obs.R | 41 ++-- R/nearests.R | 134 ++++++-------- R/reexports.R | 1 R/sample-frac-n-keys.R | 32 +-- R/stratify-keys.R | 104 +++++----- R/utils.R | 89 ++++----- R/zzz.R | 2 README.md | 11 - build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/finding-features.R | 26 +- inst/doc/finding-features.html | 4 inst/doc/getting-started.R | 8 inst/doc/id-interesting-obs.html | 4 inst/doc/longitudinal-data-structures.R | 10 - inst/doc/mixed-effects-models.html | 24 +- inst/examples/max_if.R | 8 inst/examples/new-api.R | 104 +++++----- inst/examples/test.R | 210 ++++++++++++---------- man/add_n_obs.Rd | 6 man/brolgar-features.Rd | 4 man/brolgar-package.Rd | 3 man/facet_strata.Rd | 4 man/figures/brolgar-logo.png |only man/heights.Rd | 14 - man/keys_near.tbl_ts.Rd | 4 man/monotonic.Rd | 14 - man/near_between.Rd | 4 man/near_middle.Rd | 4 man/near_quantile.Rd | 8 man/nearests.Rd | 6 man/pisa.Rd | 16 - man/sample-n-frac-keys.Rd | 4 man/stratify_keys.Rd | 14 - man/wages.Rd | 12 - tests/testthat/test-add-longnostic.R | 62 +++--- tests/testthat/test-b-funs.R | 8 tests/testthat/test-facet-sample.R | 34 +-- tests/testthat/test-facet-strata.R | 28 +- tests/testthat/test-feature-diff-summary.R | 29 +-- tests/testthat/test-feature-five-num.R | 9 tests/testthat/test-feature-monotonic.R | 13 - tests/testthat/test-feature-n-obs.R | 3 tests/testthat/test-feature-three-num.R | 6 tests/testthat/test-features-brolgar.R | 62 +++--- tests/testthat/test-features-ranges.R | 6 tests/testthat/test-features-spread.R | 6 tests/testthat/test-filter-n-obs.R | 14 - tests/testthat/test-index-helpers.R | 1 tests/testthat/test-keys-near.R | 38 ++- tests/testthat/test-longnostics.R | 70 +++---- tests/testthat/test-monotonics.R | 11 - tests/testthat/test-nearests.R | 103 +++++----- tests/testthat/test-sample-n-frac-keys.R | 10 - tests/testthat/test-sample-n-frac-multiple-keys.R | 18 - tests/testthat/test-stratify-key.R | 54 ++--- tests/testthat/test-utils.R | 50 ++--- 73 files changed, 1274 insertions(+), 1315 deletions(-)
Title: R Client for the VirusTotal API
Description: Use VirusTotal, a Google service that analyzes files and URLs
for viruses, worms, trojans etc., provides category of the content hosted by a
domain from a variety of prominent services, provides passive DNS information,
among other things. See <https://www.virustotal.com> for more information.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between virustotal versions 0.2.2 dated 2021-11-04 and 0.3.0 dated 2025-09-02
virustotal-0.2.2/virustotal/tests/testthat/virustotal_api_key |only virustotal-0.2.2/virustotal/vignettes/using_virustotal.md |only virustotal-0.3.0/virustotal/DESCRIPTION | 17 virustotal-0.3.0/virustotal/LICENSE | 2 virustotal-0.3.0/virustotal/MD5 | 157 virustotal-0.3.0/virustotal/NAMESPACE | 73 virustotal-0.3.0/virustotal/NEWS.md | 81 virustotal-0.3.0/virustotal/R/domain_report.R | 84 virustotal-0.3.0/virustotal/R/download_file.R |only virustotal-0.3.0/virustotal/R/file_report.R | 80 virustotal-0.3.0/virustotal/R/get_domain_comments.R | 84 virustotal-0.3.0/virustotal/R/get_domain_info.R | 74 virustotal-0.3.0/virustotal/R/get_domain_relationship.R | 76 virustotal-0.3.0/virustotal/R/get_domain_votes.R | 74 virustotal-0.3.0/virustotal/R/get_file_comments.R |only virustotal-0.3.0/virustotal/R/get_file_download_url.R |only virustotal-0.3.0/virustotal/R/get_file_relationships.R |only virustotal-0.3.0/virustotal/R/get_file_upload_url.R |only virustotal-0.3.0/virustotal/R/get_file_votes.R |only virustotal-0.3.0/virustotal/R/get_ip_comments.R | 64 virustotal-0.3.0/virustotal/R/get_ip_info.R | 72 virustotal-0.3.0/virustotal/R/get_ip_votes.R | 66 virustotal-0.3.0/virustotal/R/get_url_comments.R |only virustotal-0.3.0/virustotal/R/get_url_relationships.R |only virustotal-0.3.0/virustotal/R/get_url_votes.R |only virustotal-0.3.0/virustotal/R/ip_report.R | 74 virustotal-0.3.0/virustotal/R/post_comments.R | 100 virustotal-0.3.0/virustotal/R/post_domain_comments.R | 72 virustotal-0.3.0/virustotal/R/post_domain_votes.R | 74 virustotal-0.3.0/virustotal/R/post_file_comments.R |only virustotal-0.3.0/virustotal/R/post_file_votes.R |only virustotal-0.3.0/virustotal/R/post_ip_comments.R | 68 virustotal-0.3.0/virustotal/R/post_ip_votes.R | 68 virustotal-0.3.0/virustotal/R/post_url_comments.R |only virustotal-0.3.0/virustotal/R/post_url_votes.R |only virustotal-0.3.0/virustotal/R/rescan_file.R | 85 virustotal-0.3.0/virustotal/R/scan_file.R | 69 virustotal-0.3.0/virustotal/R/scan_url.R | 68 virustotal-0.3.0/virustotal/R/set_key.R | 50 virustotal-0.3.0/virustotal/R/url_report.R | 115 virustotal-0.3.0/virustotal/R/virustotal.R | 379 +- virustotal-0.3.0/virustotal/README.md | 95 virustotal-0.3.0/virustotal/build/vignette.rds |binary virustotal-0.3.0/virustotal/inst/CITATION | 30 virustotal-0.3.0/virustotal/inst/doc/using_virustotal.R | 95 virustotal-0.3.0/virustotal/inst/doc/using_virustotal.Rmd | 258 - virustotal-0.3.0/virustotal/inst/doc/using_virustotal.html | 987 +++--- virustotal-0.3.0/virustotal/man/add_comments.Rd | 88 virustotal-0.3.0/virustotal/man/domain_report.Rd | 76 virustotal-0.3.0/virustotal/man/download_file.Rd |only virustotal-0.3.0/virustotal/man/file_report.Rd | 69 virustotal-0.3.0/virustotal/man/get_domain_comments.Rd | 2 virustotal-0.3.0/virustotal/man/get_domain_info.Rd | 2 virustotal-0.3.0/virustotal/man/get_domain_relationship.Rd | 4 virustotal-0.3.0/virustotal/man/get_domain_votes.Rd | 2 virustotal-0.3.0/virustotal/man/get_file_comments.Rd |only virustotal-0.3.0/virustotal/man/get_file_download_url.Rd |only virustotal-0.3.0/virustotal/man/get_file_relationships.Rd |only virustotal-0.3.0/virustotal/man/get_file_upload_url.Rd |only virustotal-0.3.0/virustotal/man/get_file_votes.Rd |only virustotal-0.3.0/virustotal/man/get_ip_comments.Rd | 2 virustotal-0.3.0/virustotal/man/get_ip_info.Rd | 2 virustotal-0.3.0/virustotal/man/get_ip_votes.Rd | 2 virustotal-0.3.0/virustotal/man/get_url_comments.Rd |only virustotal-0.3.0/virustotal/man/get_url_relationships.Rd |only virustotal-0.3.0/virustotal/man/get_url_votes.Rd |only virustotal-0.3.0/virustotal/man/ip_report.Rd | 72 virustotal-0.3.0/virustotal/man/post_domain_comments.Rd | 2 virustotal-0.3.0/virustotal/man/post_domain_votes.Rd | 2 virustotal-0.3.0/virustotal/man/post_file_comments.Rd |only virustotal-0.3.0/virustotal/man/post_file_votes.Rd |only virustotal-0.3.0/virustotal/man/post_ip_comments.Rd | 2 virustotal-0.3.0/virustotal/man/post_ip_votes.Rd | 2 virustotal-0.3.0/virustotal/man/post_url_comments.Rd |only virustotal-0.3.0/virustotal/man/post_url_votes.Rd |only virustotal-0.3.0/virustotal/man/rate_limit.Rd | 24 virustotal-0.3.0/virustotal/man/rescan_file.Rd | 71 virustotal-0.3.0/virustotal/man/scan_file.Rd | 68 virustotal-0.3.0/virustotal/man/scan_url.Rd | 69 virustotal-0.3.0/virustotal/man/set_key.Rd | 52 virustotal-0.3.0/virustotal/man/url_report.Rd | 79 virustotal-0.3.0/virustotal/man/virustotal-package.Rd | 42 virustotal-0.3.0/virustotal/man/virustotal_GET.Rd | 51 virustotal-0.3.0/virustotal/man/virustotal_POST.Rd | 62 virustotal-0.3.0/virustotal/man/virustotal_check.Rd | 34 virustotal-0.3.0/virustotal/tests/README.html | 1638 +++++----- virustotal-0.3.0/virustotal/tests/README.md | 152 virustotal-0.3.0/virustotal/tests/testthat.R | 8 virustotal-0.3.0/virustotal/tests/testthat/test-auth.R |only virustotal-0.3.0/virustotal/tests/testthat/test-data-structures.R | 84 virustotal-0.3.0/virustotal/tests/testthat/test-domain-operations.R |only virustotal-0.3.0/virustotal/tests/testthat/test-file-operations.R |only virustotal-0.3.0/virustotal/tests/testthat/test-ip-operations.R |only virustotal-0.3.0/virustotal/tests/testthat/test-pkg-style.R | 14 virustotal-0.3.0/virustotal/tests/testthat/test-url-operations.R |only virustotal-0.3.0/virustotal/vignettes/using_virustotal.Rmd | 258 - 96 files changed, 3378 insertions(+), 3348 deletions(-)
Title: Seasonal Trend Decomposition Using Regression
Description: Methods for decomposing seasonal data: STR (a Seasonal-Trend
time series decomposition procedure based on Regression) and Robust STR. In
some ways, STR is similar to Ridge Regression and Robust STR can be related to
LASSO. They allow for multiple seasonal components, multiple linear covariates
with constant, flexible and seasonal influence. Seasonal patterns (for both
seasonal components and seasonal covariates) can be fractional and flexible
over time; moreover they can be either strictly periodic or have a more
complex topology. The methods provide confidence intervals for the estimated
components. The methods can also be used for forecasting.
Author: Alexander Dokumentov [aut] ,
Rob Hyndman [aut, cre]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between stR versions 0.7 dated 2024-07-28 and 0.7.1 dated 2025-09-02
stR-0.7.1/stR/DESCRIPTION | 11 stR-0.7.1/stR/MD5 | 71 - stR-0.7.1/stR/NEWS.md | 4 stR-0.7.1/stR/R/RSTR.R | 287 +++++-- stR-0.7.1/stR/R/STR.R | 541 +++++++++++--- stR-0.7.1/stR/R/cg.R | 9 stR-0.7.1/stR/R/heuristicSTR.R | 153 +++- stR-0.7.1/stR/R/lmSolver.R | 84 +- stR-0.7.1/stR/R/lsmr.R | 119 ++- stR-0.7.1/stR/R/mstsWrapper.R | 112 ++ stR-0.7.1/stR/R/plot.str.R | 176 +++- stR-0.7.1/stR/R/plotBeta.R | 85 +- stR-0.7.1/stR/R/seasadj.R | 9 stR-0.7.1/stR/README.md | 3 stR-0.7.1/stR/build/vignette.rds |binary stR-0.7.1/stR/inst/doc/stRvignette.R | 351 +++------ stR-0.7.1/stR/inst/doc/stRvignette.Rmd | 329 ++++---- stR-0.7.1/stR/inst/doc/stRvignette.html | 277 +++---- stR-0.7.1/stR/inst/extdata |only stR-0.7.1/stR/man/RSTRmodel.Rd | 4 stR-0.7.1/stR/man/STRmodel.Rd | 3 stR-0.7.1/stR/man/figures/README-example-1.png |binary stR-0.7.1/stR/man/figures/README-example-2.png |binary stR-0.7.1/stR/man/heuristicSTR.Rd | 2 stR-0.7.1/stR/tests/testthat/test_STR.R | 865 +++++++++++++++++++---- stR-0.7.1/stR/vignettes/stRvignette.Rmd | 329 ++++---- stR-0.7/stR/tests/testthat/Rplots.pdf |only stR-0.7/stR/vignettes/calls.fit.RDS |only stR-0.7/stR/vignettes/co2.fit.stR.RDS |only stR-0.7/stR/vignettes/co2.fit.tbats.RDS |only stR-0.7/stR/vignettes/elec.fit.2.forecasting.RDS |only stR-0.7/stR/vignettes/elec.fit.RDS |only stR-0.7/stR/vignettes/elec.fit.forecasting.RDS |only stR-0.7/stR/vignettes/gr.fit.2.stR.RDS |only stR-0.7/stR/vignettes/gr.fit.stR.RDS |only stR-0.7/stR/vignettes/logGrOutl.stR.RDS |only stR-0.7/stR/vignettes/logGrOutl.stR.robust.RDS |only stR-0.7/stR/vignettes/taylor.fit.stR.RDS |only 38 files changed, 2555 insertions(+), 1269 deletions(-)
Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table
and 'censoring count plot'. Other functions are also available to plot
adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut],
Przemyslaw Biecek [aut],
Scheipl Fabian [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.5.0 dated 2024-10-30 and 0.5.1 dated 2025-09-02
DESCRIPTION | 8 - MD5 | 54 +++++----- NEWS.md | 16 ++ R/add_ggsurvplot.R | 4 R/ggcoxdiagnostics.R | 8 + R/ggsurvplot_core.R | 33 +++++- R/ggsurvplot_df.R | 19 ++- R/ggsurvtheme.R | 6 - R/utilities.R | 8 + README.md | 8 - build/vignette.rds |binary inst/doc/Informative_Survival_Plots.R | 54 +++++----- inst/doc/Informative_Survival_Plots.Rmd | 2 inst/doc/Informative_Survival_Plots.html | 12 +- inst/doc/Playing_with_fonts_and_texts.html | 12 +- inst/doc/Specifiying_weights_in_log-rank_comparisons.html | 14 +- inst/doc/ggforest-show-interactions-hazard-ratio.html | 4 man/add_ggsurvplot.Rd | 6 - man/ggsurvtheme.Rd | 2 tests/testthat/test-ggcoxdiagnostics.R | 43 +++++++ tests/testthat/test-ggsurvplot_facet.R | 10 + tools/README-ggplot2-basic-survival-plot-1.png |binary tools/README-ggplot2-customized-survival-plot-1.png |binary tools/README-ggplot2-more-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-premium-customized-survival-plot-1.png |binary vignettes/Informative_Survival_Plots.Rmd | 2 28 files changed, 222 insertions(+), 103 deletions(-)
Title: 'Foreach' Parallel Adapter Using the 'Redis' Database
Description: Create and manage fault-tolerant task queues for the 'foreach' package using the 'Redis' key/value database.
Author: B. W. Lewis [aut, cre]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between doRedis versions 3.0.2 dated 2023-05-02 and 3.0.3 dated 2025-09-02
doRedis-3.0.2/doRedis/inst/doc/Amazon.Rnw |only doRedis-3.0.2/doRedis/inst/doc/Amazon.pdf |only doRedis-3.0.2/doRedis/inst/scripts |only doRedis-3.0.2/doRedis/vignettes/Amazon.Rnw |only doRedis-3.0.3/doRedis/DESCRIPTION | 19 +++++++----- doRedis-3.0.3/doRedis/MD5 | 39 +++++++++++-------------- doRedis-3.0.3/doRedis/R/doRedis.R | 2 - doRedis-3.0.3/doRedis/R/redisWorker.R | 4 +- doRedis-3.0.3/doRedis/R/redux.R | 3 - doRedis-3.0.3/doRedis/build/vignette.rds |binary doRedis-3.0.3/doRedis/inst/doc/Debug.pdf |binary doRedis-3.0.3/doRedis/inst/doc/Service.pdf |binary doRedis-3.0.3/doRedis/inst/doc/doRedis.pdf |binary doRedis-3.0.3/doRedis/man/doRedis-package.Rd | 5 +++ doRedis-3.0.3/doRedis/man/redisDelete.Rd | 3 - doRedis-3.0.3/doRedis/man/redisGet.Rd | 3 - doRedis-3.0.3/doRedis/man/redisSet.Rd | 3 - doRedis-3.0.3/doRedis/man/redisWorker.Rd | 2 - doRedis-3.0.3/doRedis/man/registerDoRedis.Rd | 2 - doRedis-3.0.3/doRedis/man/startLocalWorkers.Rd | 2 - doRedis-3.0.3/doRedis/src/alive.c | 2 - doRedis-3.0.3/doRedis/tests/worker.R |only doRedis-3.0.3/doRedis/vignettes/textpos.sty |only 23 files changed, 42 insertions(+), 47 deletions(-)
Title: Calculate Diversity and Segregation Indices
Description: Implements common measures of diversity and spatial segregation. This package has tools to compute the majority of measures are reviewed in Massey and Denton (1988) <doi:10.2307/2579183>. Multiple common measures of within-geography diversity are implemented as well. All functions operate on data frames with a 'tidyselect' based workflow.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between divseg versions 0.0.5 dated 2022-12-17 and 0.1.0 dated 2025-09-02
divseg-0.0.5/divseg/R/utils-pipe.R |only divseg-0.0.5/divseg/man/pipe.Rd |only divseg-0.1.0/divseg/DESCRIPTION | 23 - divseg-0.1.0/divseg/MD5 | 154 +++++----- divseg-0.1.0/divseg/NAMESPACE | 2 divseg-0.1.0/divseg/NEWS.md | 7 divseg-0.1.0/divseg/R/abs_cent.R | 158 +++++------ divseg-0.1.0/divseg/R/abs_clust.R | 41 +- divseg-0.1.0/divseg/R/abs_conc.R | 29 +- divseg-0.1.0/divseg/R/atkinson.R | 23 - divseg-0.1.0/divseg/R/blau.R | 18 - divseg-0.1.0/divseg/R/correlation.R | 22 - divseg-0.1.0/divseg/R/data.R | 4 divseg-0.1.0/divseg/R/dd_interaction.R | 155 +++++----- divseg-0.1.0/divseg/R/dd_isolation.R | 33 +- divseg-0.1.0/divseg/R/delta.R | 25 - divseg-0.1.0/divseg/R/dissim.R | 28 + divseg-0.1.0/divseg/R/diversity.R | 16 - divseg-0.1.0/divseg/R/entropy.R | 134 ++++----- divseg-0.1.0/divseg/R/gini.R | 30 +- divseg-0.1.0/divseg/R/helpers.R | 69 ++-- divseg-0.1.0/divseg/R/hhi.R | 17 - divseg-0.1.0/divseg/R/interaction.R | 26 + divseg-0.1.0/divseg/R/inv_simpson.R | 17 - divseg-0.1.0/divseg/R/isolation.R | 24 - divseg-0.1.0/divseg/R/rel_cent.R | 47 +-- divseg-0.1.0/divseg/R/rel_clust.R | 33 +- divseg-0.1.0/divseg/R/rel_conc.R | 18 - divseg-0.1.0/divseg/R/reyni.R | 14 divseg-0.1.0/divseg/R/shannon.R | 20 - divseg-0.1.0/divseg/R/spat_prox.R | 35 +- divseg-0.1.0/divseg/R/utils-tidy-eval.R | 214 +++++++-------- divseg-0.1.0/divseg/README.md | 47 +-- divseg-0.1.0/divseg/inst/CITATION | 23 - divseg-0.1.0/divseg/man/de_county.Rd | 2 divseg-0.1.0/divseg/man/de_tract.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_cent.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_clust.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_conc.Rd | 2 divseg-0.1.0/divseg/man/ds_blau.Rd | 2 divseg-0.1.0/divseg/man/ds_dd_interaction.Rd | 2 divseg-0.1.0/divseg/man/ds_dd_isolation.Rd | 2 divseg-0.1.0/divseg/man/ds_delta.Rd | 2 divseg-0.1.0/divseg/man/ds_dissim.Rd | 2 divseg-0.1.0/divseg/man/ds_entropy.Rd | 2 divseg-0.1.0/divseg/man/ds_gini.Rd | 2 divseg-0.1.0/divseg/man/ds_hhi.Rd | 2 divseg-0.1.0/divseg/man/ds_inv_simpson.Rd | 2 divseg-0.1.0/divseg/man/ds_rel_cent.Rd | 2 divseg-0.1.0/divseg/man/ds_rel_clust.Rd | 2 divseg-0.1.0/divseg/man/ds_shannon.Rd | 2 divseg-0.1.0/divseg/man/ds_spat_prox.Rd | 2 divseg-0.1.0/divseg/man/tidyeval.Rd | 14 divseg-0.1.0/divseg/tests/testthat.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_cent.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_clust.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_conc.R | 4 divseg-0.1.0/divseg/tests/testthat/test-atkinson.R | 6 divseg-0.1.0/divseg/tests/testthat/test-blau.R | 4 divseg-0.1.0/divseg/tests/testthat/test-correlation.R | 5 divseg-0.1.0/divseg/tests/testthat/test-dd_interaction.R | 6 divseg-0.1.0/divseg/tests/testthat/test-dd_isolation.R | 6 divseg-0.1.0/divseg/tests/testthat/test-delta.R | 6 divseg-0.1.0/divseg/tests/testthat/test-dissim.R | 6 divseg-0.1.0/divseg/tests/testthat/test-diversity.R | 6 divseg-0.1.0/divseg/tests/testthat/test-entropy.R | 10 divseg-0.1.0/divseg/tests/testthat/test-gini.R | 8 divseg-0.1.0/divseg/tests/testthat/test-hhi.R | 4 divseg-0.1.0/divseg/tests/testthat/test-interaction.R | 7 divseg-0.1.0/divseg/tests/testthat/test-inv_simpson.R | 4 divseg-0.1.0/divseg/tests/testthat/test-isolation.R | 7 divseg-0.1.0/divseg/tests/testthat/test-perplexity.R | 2 divseg-0.1.0/divseg/tests/testthat/test-rel_cent.R | 4 divseg-0.1.0/divseg/tests/testthat/test-rel_clust.R | 4 divseg-0.1.0/divseg/tests/testthat/test-rel_conc.R | 4 divseg-0.1.0/divseg/tests/testthat/test-reyni.R | 6 divseg-0.1.0/divseg/tests/testthat/test-shannon.R | 4 divseg-0.1.0/divseg/tests/testthat/test-simpson.R | 2 divseg-0.1.0/divseg/tests/testthat/test-spat_prox.R | 4 79 files changed, 880 insertions(+), 807 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/solutions/technologies/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.19 dated 2025-01-07 and 0.4.20 dated 2025-09-02
xpose-0.4.19/xpose/man/print.ggplot.Rd |only xpose-0.4.20/xpose/DESCRIPTION | 15 - xpose-0.4.20/xpose/MD5 | 39 +-- xpose-0.4.20/xpose/NEWS.md | 3 xpose-0.4.20/xpose/R/print_xpose_plot.R | 125 ++++------- xpose-0.4.20/xpose/R/update_themes.R | 4 xpose-0.4.20/xpose/R/xplot_helpers.R | 11 xpose-0.4.20/xpose/R/xpose_data.R | 2 xpose-0.4.20/xpose/R/zzz.R | 16 - xpose-0.4.20/xpose/build/vignette.rds |binary xpose-0.4.20/xpose/data/xpdb_ex_pk.rda |binary xpose-0.4.20/xpose/inst/doc/access_xpdb_data.html | 2 xpose-0.4.20/xpose/inst/doc/customize_plots.html | 34 +- xpose-0.4.20/xpose/inst/doc/import_model_outputs.html | 2 xpose-0.4.20/xpose/inst/doc/introduction.html | 10 xpose-0.4.20/xpose/inst/doc/multiple_pages.html | 14 - xpose-0.4.20/xpose/inst/doc/vpc.html | 10 xpose-0.4.20/xpose/man/print.xpose_plot.Rd | 2 xpose-0.4.20/xpose/tests/testthat/test-theme-objects.R | 5 xpose-0.4.20/xpose/tests/testthat/test-update_themes.R | 5 xpose-0.4.20/xpose/tests/testthat/test-xpose-default-plots.R | 7 21 files changed, 150 insertions(+), 156 deletions(-)
Title: Build and Run Spatially Explicit Agent-Based Models
Description: Build and run spatially explicit
agent-based models using only the R platform. 'NetLogoR' follows the same
framework as the 'NetLogo' software
(Wilensky (1999) <https://www.netlogo.org>) and is a translation
in R of the structure and functions of 'NetLogo'.
'NetLogoR' provides new R classes to define model agents and functions to
implement spatially explicit agent-based models in the R environment.
This package allows benefiting of the fast and easy coding phase from the
highly developed 'NetLogo' framework, coupled with the versatility, power
and massive resources of the R software.
Examples of two models from the NetLogo software repository
(Ants <https://ccl.northwestern.edu/netlogo/models/Ants>) and
Wolf-Sheep-Predation
(<https://ccl.northwestern.edu/netlogo/models/WolfSheepPredation>),
and a third, Butterfly, from
Railsback and Grimm (2012) <https://www.railsback-grimm-abm-book.com/>, all
written using 'NetLogoR' are available.
The 'NetLogo' code of the ori [...truncated...]
Author: Sarah Bauduin [aut] ,
Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between NetLogoR versions 1.0.5 dated 2024-01-08 and 1.0.6 dated 2025-09-02
DESCRIPTION | 56 +- MD5 | 214 ++++----- NAMESPACE | 1 NEWS.md | 31 - R/NetLogoR-package.R | 5 R/agentMatrix-Class-methods.R | 41 - R/agentset-functions.R | 68 +- R/patch-functions.R | 54 +- R/turtle-functions.R | 174 +++---- R/world-functions.R | 28 - R/worldNLR-classes-methods.R | 4 README.md | 88 +-- build/vignette.rds |binary inst/WORDLIST | 24 - inst/doc/NLR-Dictionary.Rmd | 4 inst/doc/NLR-Dictionary.html | 31 - inst/doc/ProgrammingGuide.R | 94 ++-- inst/doc/ProgrammingGuide.Rmd | 2 inst/doc/ProgrammingGuide.html | 187 ++++---- inst/examples/Ants/Ants.R | 225 +++++++-- inst/examples/Wolf-Sheep-Predation/Wolf-Sheep-Predation.R | 231 +++++++--- inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.Rmd | 2 man/NLall.Rd | 4 man/NLany.Rd | 4 man/NLcount.Rd | 4 man/NLdist.Rd | 6 man/NLset.Rd | 4 man/NLwith.Rd | 4 man/NetLogoR-package.Rd | 9 man/agentMatrix-show-methods.Rd | 11 man/agentMatrix.Rd | 2 man/bbox.Rd | 9 man/bk.Rd | 6 man/canMove.Rd | 4 man/clearPatches.Rd | 4 man/coordinates.Rd | 8 man/createOTurtles.Rd | 4 man/createTurtles.Rd | 4 man/createWorld.Rd | 2 man/die.Rd | 4 man/diffuse.Rd | 6 man/downhill.Rd | 4 man/dx.Rd | 4 man/dy.Rd | 4 man/extent.Rd | 4 man/face.Rd | 6 man/fd.Rd | 6 man/hatch.Rd | 4 man/home.Rd | 4 man/inCone.Rd | 4 man/inRadius.Rd | 4 man/inspect.Rd | 4 man/isNLclass.Rd | 4 man/layoutCircle.Rd | 4 man/left.Rd | 4 man/maxNof.Rd | 4 man/maxOneOf.Rd | 4 man/maxPxcor.Rd | 4 man/maxPycor.Rd | 4 man/minNof.Rd | 4 man/minOneOf.Rd | 4 man/minPxcor.Rd | 4 man/minPycor.Rd | 4 man/moveTo.Rd | 4 man/nOf.Rd | 4 man/neighbors.Rd | 4 man/noPatches.Rd | 4 man/noTurtles.Rd | 4 man/of.Rd | 4 man/oneOf.Rd | 4 man/other.Rd | 4 man/pExist.Rd | 4 man/patch.Rd | 4 man/patchAhead.Rd | 4 man/patchAt.Rd | 6 man/patchDistDir.Rd | 4 man/patchHere.Rd | 4 man/patchLeft.Rd | 4 man/patchRight.Rd | 4 man/patchSet.Rd | 4 man/patches.Rd | 4 man/randomPxcor.Rd | 4 man/randomPycor.Rd | 4 man/randomXcor.Rd | 4 man/randomYcor.Rd | 4 man/right.Rd | 4 man/setXY.Rd | 4 man/sortOn.Rd | 4 man/sprout.Rd | 4 man/subHeadings.Rd | 4 man/tExist.Rd | 4 man/towards.Rd | 6 man/turtle.Rd | 4 man/turtleSet.Rd | 4 man/turtlesAt.Rd | 6 man/turtlesOn.Rd | 4 man/turtlesOwn.Rd | 8 man/updateList.Rd | 6 man/uphill.Rd | 4 man/withMax.Rd | 4 man/withMin.Rd | 4 man/worldHeight.Rd | 4 man/worldMatrix-class.Rd | 2 man/worldWidth.Rd | 4 tests/testthat/test-agentMatrix.R | 4 tests/testthat/test-turtle-functions.R | 36 + vignettes/NLR-Dictionary.Rmd | 4 vignettes/ProgrammingGuide.Rmd | 2 108 files changed, 1106 insertions(+), 869 deletions(-)
Title: Create 'ggplot2' and 'gt' Visuals with Major League Baseball
Logos
Description: Tools to help visualize Major League Baseball analysis in 'ggplot2'
and 'gt'. You provide team/player information and 'mlbplotR' will transform
that information into team colors, logos, or player headshots for graphics.
Author: Sebastian Carl [aut],
Camden Kay [aut, cre, cph]
Maintainer: Camden Kay <camden.kay23@gmail.com>
Diff between mlbplotR versions 1.1.0 dated 2023-06-20 and 1.2.0 dated 2025-09-02
mlbplotR-1.1.0/mlbplotR/man/gt_fmt_mlb_headshot.Rd |only mlbplotR-1.2.0/mlbplotR/DESCRIPTION | 12 mlbplotR-1.2.0/mlbplotR/LICENSE | 4 mlbplotR-1.2.0/mlbplotR/MD5 | 94 mlbplotR-1.2.0/mlbplotR/NAMESPACE | 150 - mlbplotR-1.2.0/mlbplotR/NEWS.md | 14 mlbplotR-1.2.0/mlbplotR/R/build_grobs.R | 258 +- mlbplotR-1.2.0/mlbplotR/R/geom_cap_logos.R | 456 +-- mlbplotR-1.2.0/mlbplotR/R/geom_from_path.R | 268 +- mlbplotR-1.2.0/mlbplotR/R/geom_lines.R | 364 +-- mlbplotR-1.2.0/mlbplotR/R/geom_milb_logos.R |only mlbplotR-1.2.0/mlbplotR/R/geom_mlb_headshots.R | 455 ++- mlbplotR-1.2.0/mlbplotR/R/geom_mlb_logos.R | 576 ++-- mlbplotR-1.2.0/mlbplotR/R/ggpreview.R | 138 - mlbplotR-1.2.0/mlbplotR/R/gt_helpers.R | 989 +++++--- mlbplotR-1.2.0/mlbplotR/R/load_data.R | 196 - mlbplotR-1.2.0/mlbplotR/R/mlb_team_factors.R | 154 - mlbplotR-1.2.0/mlbplotR/R/mlb_tier_maker.R | 736 +++--- mlbplotR-1.2.0/mlbplotR/R/mlbplotR-package.R | 26 mlbplotR-1.2.0/mlbplotR/R/scale_mlb.R | 434 +-- mlbplotR-1.2.0/mlbplotR/R/sysdata.rda |binary mlbplotR-1.2.0/mlbplotR/R/theme_elements.R | 1393 +++++++----- mlbplotR-1.2.0/mlbplotR/R/theme_mlb.R | 138 - mlbplotR-1.2.0/mlbplotR/R/utils.R | 116 mlbplotR-1.2.0/mlbplotR/README.md | 146 - mlbplotR-1.2.0/mlbplotR/man/clean_team_abbrs.Rd | 58 mlbplotR-1.2.0/mlbplotR/man/element.Rd | 400 +-- mlbplotR-1.2.0/mlbplotR/man/figures/README-every-team-1.png |binary mlbplotR-1.2.0/mlbplotR/man/geom_cap_logos.Rd | 384 +-- mlbplotR-1.2.0/mlbplotR/man/geom_from_path.Rd | 310 +- mlbplotR-1.2.0/mlbplotR/man/geom_lines.Rd | 267 +- mlbplotR-1.2.0/mlbplotR/man/geom_milb_logos.Rd |only mlbplotR-1.2.0/mlbplotR/man/geom_mlb_headshots.Rd | 373 +-- mlbplotR-1.2.0/mlbplotR/man/geom_mlb_logos.Rd | 404 +-- mlbplotR-1.2.0/mlbplotR/man/ggpreview.Rd | 176 - mlbplotR-1.2.0/mlbplotR/man/gt_merge_stack_team_color.Rd | 114 mlbplotR-1.2.0/mlbplotR/man/gt_milb.Rd |only mlbplotR-1.2.0/mlbplotR/man/gt_mlb.Rd | 105 mlbplotR-1.2.0/mlbplotR/man/gt_mlb_column_labels.Rd | 98 mlbplotR-1.2.0/mlbplotR/man/gt_mlb_headshots.Rd |only mlbplotR-1.2.0/mlbplotR/man/load_headshots.Rd | 41 mlbplotR-1.2.0/mlbplotR/man/load_milb_teams.Rd |only mlbplotR-1.2.0/mlbplotR/man/load_mlb_teams.Rd | 46 mlbplotR-1.2.0/mlbplotR/man/mlb_player_tiers.Rd | 263 +- mlbplotR-1.2.0/mlbplotR/man/mlb_team_factor.Rd | 136 - mlbplotR-1.2.0/mlbplotR/man/mlb_team_tiers.Rd | 264 +- mlbplotR-1.2.0/mlbplotR/man/mlbplotR-package.Rd | 176 - mlbplotR-1.2.0/mlbplotR/man/scale_axes_mlb.Rd | 296 +- mlbplotR-1.2.0/mlbplotR/man/scale_mlb.Rd | 289 +- mlbplotR-1.2.0/mlbplotR/man/theme_mlb.Rd | 112 mlbplotR-1.2.0/mlbplotR/man/valid_team_names.Rd | 50 51 files changed, 6249 insertions(+), 5230 deletions(-)
Title: Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees
Description: Create, visualize, and test fast-and-frugal decision trees (FFTs) using the algorithms and methods described by Phillips, Neth, Woike & Gaissmaier (2017), <doi:10.1017/S1930297500006239>.
FFTs are simple and transparent decision trees for solving binary classification problems.
FFTs can be preferable to more complex algorithms because they require very little information, are easy to understand and communicate, and are robust against overfitting.
Author: Nathaniel Phillips [aut] ,
Hansjoerg Neth [aut, cre] ,
Jan Woike [aut] ,
Wolfgang Gaissmaier [aut]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between FFTrees versions 2.0.0 dated 2023-06-05 and 2.1.0 dated 2025-09-02
FFTrees-2.0.0/FFTrees/R/fftrees_fitcomp.R |only FFTrees-2.0.0/FFTrees/inst/CoronaryArtery.jpg |only FFTrees-2.0.0/FFTrees/inst/confusiontable.jpg |only FFTrees-2.0.0/FFTrees/inst/gFFTs.png |only FFTrees-2.0.0/FFTrees/inst/mushrooms.jpg |only FFTrees-2.0.0/FFTrees/inst/titanic.jpg |only FFTrees-2.0.0/FFTrees/inst/virginica.jpg |only FFTrees-2.0.0/FFTrees/man/comp_pred.Rd |only FFTrees-2.0.0/FFTrees/man/fftrees_fitcomp.Rd |only FFTrees-2.0.0/FFTrees/tests/testthat/test_10_NA_data.R |only FFTrees-2.1.0/FFTrees/DESCRIPTION | 29 FFTrees-2.1.0/FFTrees/MD5 | 157 FFTrees-2.1.0/FFTrees/NAMESPACE | 6 FFTrees-2.1.0/FFTrees/NEWS.md | 66 FFTrees-2.1.0/FFTrees/R/FFTrees.R | 62 FFTrees-2.1.0/FFTrees/R/FFTreesdata_doc.R | 241 - FFTrees-2.1.0/FFTrees/R/fftrees_apply.R | 31 FFTrees-2.1.0/FFTrees/R/fftrees_create.R | 18 FFTrees-2.1.0/FFTrees/R/plotFFTrees_function.R | 2350 ++++------ FFTrees-2.1.0/FFTrees/R/replace_values_function.R |only FFTrees-2.1.0/FFTrees/R/util_abc.R | 42 FFTrees-2.1.0/FFTrees/R/util_const.R | 4 FFTrees-2.1.0/FFTrees/R/util_plot.R | 6 FFTrees-2.1.0/FFTrees/R/util_stats.R | 713 --- FFTrees-2.1.0/FFTrees/README.md | 126 FFTrees-2.1.0/FFTrees/build/partial.rdb |only FFTrees-2.1.0/FFTrees/build/vignette.rds |binary FFTrees-2.1.0/FFTrees/inst/CITATION | 4 FFTrees-2.1.0/FFTrees/inst/WORDLIST | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.R | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.html | 49 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.R | 20 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.Rmd | 19 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.html | 120 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.R | 10 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.html | 183 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.R | 16 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.Rmd | 5 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.html | 85 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.R | 828 +-- FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.Rmd | 19 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.html | 252 - FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.R | 6 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.html | 100 FFTrees-2.1.0/FFTrees/inst/doc/guide.R | 25 FFTrees-2.1.0/FFTrees/inst/doc/guide.Rmd | 10 FFTrees-2.1.0/FFTrees/inst/doc/guide.html | 33 FFTrees-2.1.0/FFTrees/man/FFTrees-package.Rd |only FFTrees-2.1.0/FFTrees/man/FFTrees.Rd | 32 FFTrees-2.1.0/FFTrees/man/add_stats.Rd | 5 FFTrees-2.1.0/FFTrees/man/blood.Rd | 2 FFTrees-2.1.0/FFTrees/man/breastcancer.Rd | 10 FFTrees-2.1.0/FFTrees/man/car.Rd | 6 FFTrees-2.1.0/FFTrees/man/classtable.Rd | 2 FFTrees-2.1.0/FFTrees/man/contraceptive.Rd | 5 FFTrees-2.1.0/FFTrees/man/creditapproval.Rd | 12 FFTrees-2.1.0/FFTrees/man/fertility.Rd | 5 FFTrees-2.1.0/FFTrees/man/fftrees_create.Rd | 15 FFTrees-2.1.0/FFTrees/man/figures/README-example-heart-plot-1.png |binary FFTrees-2.1.0/FFTrees/man/figures/README-example-heart-verbal-1.png |binary FFTrees-2.1.0/FFTrees/man/figures/logo.png |only FFTrees-2.1.0/FFTrees/man/forestfires.Rd | 2 FFTrees-2.1.0/FFTrees/man/heart.cost.Rd | 6 FFTrees-2.1.0/FFTrees/man/heartdisease.Rd | 15 FFTrees-2.1.0/FFTrees/man/iris.v.Rd | 5 FFTrees-2.1.0/FFTrees/man/mushrooms.Rd | 2 FFTrees-2.1.0/FFTrees/man/plot.FFTrees.Rd | 14 FFTrees-2.1.0/FFTrees/man/sonar.Rd | 128 FFTrees-2.1.0/FFTrees/man/titanic.Rd | 6 FFTrees-2.1.0/FFTrees/man/voting.Rd | 7 FFTrees-2.1.0/FFTrees/man/wine.Rd | 7 FFTrees-2.1.0/FFTrees/tests/testthat/test_09_cost.R | 5 FFTrees-2.1.0/FFTrees/tests/testthat/test_10_tree_definitions.R |only FFTrees-2.1.0/FFTrees/tests/testthat/test_11_NA_data.R |only FFTrees-2.1.0/FFTrees/vignettes/CoronaryArtery.jpg |only FFTrees-2.1.0/FFTrees/vignettes/FFTrees_accuracy_statistics.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_examples.Rmd | 19 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_function.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_heart.Rmd | 5 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_mytree.Rmd | 19 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_plot.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/confusiontable.jpg |only FFTrees-2.1.0/FFTrees/vignettes/gFFTs.png |only FFTrees-2.1.0/FFTrees/vignettes/guide.Rmd | 10 FFTrees-2.1.0/FFTrees/vignettes/logo.png |only FFTrees-2.1.0/FFTrees/vignettes/mushrooms.jpg |only FFTrees-2.1.0/FFTrees/vignettes/titanic.jpg |only FFTrees-2.1.0/FFTrees/vignettes/virginica.jpg |only 91 files changed, 2637 insertions(+), 3358 deletions(-)
Title: Measuring Association with Recursive Binning
Description: An iterative implementation of a recursive binary partitioning algorithm to measure pairwise dependence with a modular design that allows user specification of the splitting logic and stop criteria. Helper functions provide suggested versions of both and support visualization and the computation of summary statistics on final binnings. For a thorough discussion and demonstration of the algorithm, see Salahub and Oldford (2025) <doi:10.1002/sam.70042>.
Author: Chris Salahub [aut, cre] ,
Wayne Oldford [aut]
Maintainer: Chris Salahub <chris.salahub@uwaterloo.ca>
Diff between AssocBin versions 1.1-1 dated 2025-08-29 and 1.1-2 dated 2025-09-02
AssocBin-1.1-1/AssocBin/inst/doc/complex.R |only AssocBin-1.1-1/AssocBin/inst/doc/complex.Rmd |only AssocBin-1.1-1/AssocBin/inst/doc/complex.html |only AssocBin-1.1-1/AssocBin/vignettes/complex.Rmd |only AssocBin-1.1-2/AssocBin/DESCRIPTION | 14 + AssocBin-1.1-2/AssocBin/MD5 | 16 -- AssocBin-1.1-2/AssocBin/build/vignette.rds |binary AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.R | 29 +++ AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.Rmd | 81 +++++++++-- AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.html | 183 +++++++++++++++++++------ AssocBin-1.1-2/AssocBin/vignettes/AssocBin.Rmd | 81 +++++++++-- 11 files changed, 328 insertions(+), 76 deletions(-)
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles
of birds and other biological signals in weather radar data. See Dokter et al.
(2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
Author: Anders Henja [aut] ,
Adriaan M. Dokter [aut, cre] ,
Alexander Tedeschi [ctb] ,
Tsung-Yu Lin [ctb] ,
Subranshu Maji [ctb] ,
Daniel Sheldon [ctb] ,
Bart Kranstauber [ctb] ,
Jurriaan H. Spaaks [ctb] ,
Lourens Veen [ctb] ,
Iwan Holleman [ctb] ,
Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <vol2birdr@cornell.edu>
Diff between vol2birdR versions 1.2.0 dated 2025-09-02 and 1.2.1 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++-- R/rsl2odim.R | 4 ++-- man/rsl2odim.Rd | 4 ++-- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: The Colors of your University
Description: Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
Author: Hansjoerg Neth [aut, cre] ,
Constantin Basler [ctb],
Paula Bauer [ctb],
Kaethe Bodenstein [ctb],
Franziska Drechsel [ctb],
Gina-Loretta Franz [ctb],
Karolin Heiss [ctb],
Julia Koenig [ctb],
Isabelle Krist [ctb],
Larissa Schwab [ctb],
Alina Sohst [ctb [...truncated...]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between unicol versions 0.3.0 dated 2024-05-01 and 0.4.0 dated 2025-09-02
unicol-0.3.0/unicol/man/fu_0.Rd |only unicol-0.4.0/unicol/DESCRIPTION | 13 unicol-0.4.0/unicol/MD5 | 816 +++++----- unicol-0.4.0/unicol/NAMESPACE | 6 unicol-0.4.0/unicol/NEWS.md | 65 unicol-0.4.0/unicol/R/0_all_pals.R | 34 unicol-0.4.0/unicol/R/2_example_pal.R | 10 unicol-0.4.0/unicol/R/5_util.R | 3 unicol-0.4.0/unicol/R/ANU.R | 20 unicol-0.4.0/unicol/R/Aalto.R | 22 unicol-0.4.0/unicol/R/Aarhus.R | 10 unicol-0.4.0/unicol/R/Aberystwyth.R | 20 unicol-0.4.0/unicol/R/Arizona.R | 30 unicol-0.4.0/unicol/R/Auckland.R | 20 unicol-0.4.0/unicol/R/Bangor.R | 40 unicol-0.4.0/unicol/R/Bergen.R | 40 unicol-0.4.0/unicol/R/Berkeley.R | 32 unicol-0.4.0/unicol/R/Birmingham.R | 14 unicol-0.4.0/unicol/R/Boston_University.R | 10 unicol-0.4.0/unicol/R/British_Columbia.R | 10 unicol-0.4.0/unicol/R/Brown.R | 20 unicol-0.4.0/unicol/R/CMU.R | 30 unicol-0.4.0/unicol/R/Caltech.R | 30 unicol-0.4.0/unicol/R/Cardiff.R | 24 unicol-0.4.0/unicol/R/Carleton.R | 10 unicol-0.4.0/unicol/R/Columbia.R | 38 unicol-0.4.0/unicol/R/Concordia.R | 40 unicol-0.4.0/unicol/R/Copenhagen.R | 20 unicol-0.4.0/unicol/R/Cork.R | 40 unicol-0.4.0/unicol/R/Cornell.R | 30 unicol-0.4.0/unicol/R/Dartmouth.R | 38 unicol-0.4.0/unicol/R/Duke.R | 20 unicol-0.4.0/unicol/R/Dundee.R | 50 unicol-0.4.0/unicol/R/ETH.R | 30 unicol-0.4.0/unicol/R/Edinburgh.R | 10 unicol-0.4.0/unicol/R/FU_Berlin.R | 376 +++- unicol-0.4.0/unicol/R/Florida.R | 30 unicol-0.4.0/unicol/R/Galway.R | 20 unicol-0.4.0/unicol/R/Glasgow.R | 20 unicol-0.4.0/unicol/R/Gothenburg.R | 12 unicol-0.4.0/unicol/R/Groningen.R | 20 unicol-0.4.0/unicol/R/Guelph.R | 16 unicol-0.4.0/unicol/R/HU_Berlin.R | 64 unicol-0.4.0/unicol/R/Harvard.R | 30 unicol-0.4.0/unicol/R/Helsinki.R | 46 unicol-0.4.0/unicol/R/JHU.R | 50 unicol-0.4.0/unicol/R/Kassel.R | 14 unicol-0.4.0/unicol/R/LMU_Munich.R | 30 unicol-0.4.0/unicol/R/Lancaster.R | 20 unicol-0.4.0/unicol/R/Laval.R | 10 unicol-0.4.0/unicol/R/Limerick.R | 20 unicol-0.4.0/unicol/R/Lisbon.R | 14 unicol-0.4.0/unicol/R/Lund.R | 30 unicol-0.4.0/unicol/R/MIT.R | 10 unicol-0.4.0/unicol/R/MPG.R | 16 unicol-0.4.0/unicol/R/Macquarie.R | 28 unicol-0.4.0/unicol/R/Manchester_Uni.R | 26 unicol-0.4.0/unicol/R/Manitoba.R | 28 unicol-0.4.0/unicol/R/Maynooth.R | 10 unicol-0.4.0/unicol/R/McGill.R | 60 unicol-0.4.0/unicol/R/McMaster.R | 26 unicol-0.4.0/unicol/R/Michigan.R | 26 unicol-0.4.0/unicol/R/Michigan_State.R | 10 unicol-0.4.0/unicol/R/Minnesota_Twin_Cities.R | 26 unicol-0.4.0/unicol/R/Monash.R | 20 unicol-0.4.0/unicol/R/NYU.R | 40 unicol-0.4.0/unicol/R/Newfoundland.R | 20 unicol-0.4.0/unicol/R/Northwestern.R | 20 unicol-0.4.0/unicol/R/NotreDame.R | 20 unicol-0.4.0/unicol/R/Nottingham.R | 30 unicol-0.4.0/unicol/R/Ohio_Uni.R | 20 unicol-0.4.0/unicol/R/Oslo.R | 10 unicol-0.4.0/unicol/R/Otago.R | 10 unicol-0.4.0/unicol/R/Ottawa.R | 10 unicol-0.4.0/unicol/R/Oxford.R | 80 unicol-0.4.0/unicol/R/Pittsburgh.R | 26 unicol-0.4.0/unicol/R/Potsdam.R | 14 unicol-0.4.0/unicol/R/Princeton.R | 30 unicol-0.4.0/unicol/R/Queens_University.R | 20 unicol-0.4.0/unicol/R/RPI.R | 38 unicol-0.4.0/unicol/R/RPTU.R | 18 unicol-0.4.0/unicol/R/SFU.R | 10 unicol-0.4.0/unicol/R/StAndrews.R | 20 unicol-0.4.0/unicol/R/Stanford.R | 30 unicol-0.4.0/unicol/R/Stirling.R | 46 unicol-0.4.0/unicol/R/Stockholm.R | 20 unicol-0.4.0/unicol/R/Toronto.R | 10 unicol-0.4.0/unicol/R/Trinity_College_Dublin.R | 20 unicol-0.4.0/unicol/R/UCDublin.R | 18 unicol-0.4.0/unicol/R/UCIrvine.R | 50 unicol-0.4.0/unicol/R/UCLA.R | 40 unicol-0.4.0/unicol/R/UCSD.R | 30 unicol-0.4.0/unicol/R/UCalgary.R | 40 unicol-0.4.0/unicol/R/UChicago.R | 20 unicol-0.4.0/unicol/R/UMass.R | 30 unicol-0.4.0/unicol/R/UPenn.R | 20 unicol-0.4.0/unicol/R/UVic.R | 26 unicol-0.4.0/unicol/R/UWaterloo.R | 84 - unicol-0.4.0/unicol/R/Uni_Bonn.R | 24 unicol-0.4.0/unicol/R/Uni_Freiburg.R | 76 unicol-0.4.0/unicol/R/Uni_Goettingen.R | 30 unicol-0.4.0/unicol/R/Uni_Halle-Wittenberg.R | 10 unicol-0.4.0/unicol/R/Uni_Hamburg.R | 22 unicol-0.4.0/unicol/R/Uni_Heidelberg.R | 10 unicol-0.4.0/unicol/R/Uni_Jena.R | 28 unicol-0.4.0/unicol/R/Uni_Kiel.R | 24 unicol-0.4.0/unicol/R/Uni_Koeln.R | 20 unicol-0.4.0/unicol/R/Uni_Konstanz.R | 26 unicol-0.4.0/unicol/R/Uni_Magdeburg.R | 30 unicol-0.4.0/unicol/R/Uni_Manchester.R | 10 unicol-0.4.0/unicol/R/Uni_Mannheim.R | 22 unicol-0.4.0/unicol/R/Uni_Regensburg.R | 38 unicol-0.4.0/unicol/R/Uni_Stuttgart.R | 20 unicol-0.4.0/unicol/R/Uni_Ulm.R | 24 unicol-0.4.0/unicol/R/Uppsala.R | 16 unicol-0.4.0/unicol/R/Vanderbilt.R | 30 unicol-0.4.0/unicol/R/WM.R | 30 unicol-0.4.0/unicol/R/Waikato.R | 10 unicol-0.4.0/unicol/R/Western_Uni.R | 10 unicol-0.4.0/unicol/R/Willamette.R | 10 unicol-0.4.0/unicol/R/Wollongong.R | 20 unicol-0.4.0/unicol/R/Yale.R | 10 unicol-0.4.0/unicol/R/Yeshiva.R | 10 unicol-0.4.0/unicol/R/York.R | 20 unicol-0.4.0/unicol/README.md | 69 unicol-0.4.0/unicol/build/partial.rdb |binary unicol-0.4.0/unicol/build/vignette.rds |binary unicol-0.4.0/unicol/inst/CITATION | 8 unicol-0.4.0/unicol/inst/WORDLIST | 3 unicol-0.4.0/unicol/inst/doc/color_pals.R | 82 - unicol-0.4.0/unicol/inst/doc/color_pals.Rmd | 54 unicol-0.4.0/unicol/inst/doc/color_pals.html | 517 +++--- unicol-0.4.0/unicol/inst/doc/using_pals.Rmd | 1 unicol-0.4.0/unicol/inst/doc/using_pals.html | 24 unicol-0.4.0/unicol/man/aalto_1.Rd | 10 unicol-0.4.0/unicol/man/aalto_2.Rd | 12 unicol-0.4.0/unicol/man/aarhus.Rd | 10 unicol-0.4.0/unicol/man/aberystwyth_1.Rd | 10 unicol-0.4.0/unicol/man/aberystwyth_2.Rd | 10 unicol-0.4.0/unicol/man/anu_1.Rd | 10 unicol-0.4.0/unicol/man/anu_2.Rd | 10 unicol-0.4.0/unicol/man/asu_1.Rd | 10 unicol-0.4.0/unicol/man/asu_2.Rd | 10 unicol-0.4.0/unicol/man/asu_3.Rd | 10 unicol-0.4.0/unicol/man/auckland_1.Rd | 10 unicol-0.4.0/unicol/man/auckland_2.Rd | 10 unicol-0.4.0/unicol/man/bangor_1.Rd | 10 unicol-0.4.0/unicol/man/bangor_2.Rd | 10 unicol-0.4.0/unicol/man/bangor_3.Rd | 10 unicol-0.4.0/unicol/man/bangor_4.Rd | 10 unicol-0.4.0/unicol/man/bergen_1.Rd | 10 unicol-0.4.0/unicol/man/bergen_2.Rd | 10 unicol-0.4.0/unicol/man/bergen_3.Rd | 10 unicol-0.4.0/unicol/man/bergen_4.Rd | 10 unicol-0.4.0/unicol/man/berkeley_1.Rd | 14 unicol-0.4.0/unicol/man/berkeley_2.Rd | 16 unicol-0.4.0/unicol/man/birmingham.Rd | 12 unicol-0.4.0/unicol/man/brown_1.Rd | 10 unicol-0.4.0/unicol/man/brown_2.Rd | 10 unicol-0.4.0/unicol/man/bu.Rd | 10 unicol-0.4.0/unicol/man/caltech_1.Rd | 10 unicol-0.4.0/unicol/man/caltech_2.Rd | 10 unicol-0.4.0/unicol/man/caltech_3.Rd | 10 unicol-0.4.0/unicol/man/cardiff_1.Rd | 10 unicol-0.4.0/unicol/man/cardiff_2.Rd | 12 unicol-0.4.0/unicol/man/carleton.Rd | 10 unicol-0.4.0/unicol/man/cmu_1.Rd | 10 unicol-0.4.0/unicol/man/cmu_2.Rd | 10 unicol-0.4.0/unicol/man/cmu_3.Rd | 10 unicol-0.4.0/unicol/man/columbia_1.Rd | 10 unicol-0.4.0/unicol/man/columbia_2.Rd | 10 unicol-0.4.0/unicol/man/columbia_3.Rd | 10 unicol-0.4.0/unicol/man/concordia_1.Rd | 10 unicol-0.4.0/unicol/man/concordia_2.Rd | 10 unicol-0.4.0/unicol/man/concordia_3.Rd | 10 unicol-0.4.0/unicol/man/concordia_4.Rd | 10 unicol-0.4.0/unicol/man/cornell_1.Rd | 10 unicol-0.4.0/unicol/man/cornell_2.Rd | 10 unicol-0.4.0/unicol/man/cornell_3_accent.Rd | 10 unicol-0.4.0/unicol/man/dartmouth_1.Rd | 12 unicol-0.4.0/unicol/man/dartmouth_2.Rd | 12 unicol-0.4.0/unicol/man/dartmouth_3.Rd | 12 unicol-0.4.0/unicol/man/duke_1.Rd | 10 unicol-0.4.0/unicol/man/duke_2.Rd | 10 unicol-0.4.0/unicol/man/dundee_background.Rd | 12 unicol-0.4.0/unicol/man/dundee_block.Rd | 12 unicol-0.4.0/unicol/man/dundee_core.Rd | 12 unicol-0.4.0/unicol/man/dundee_highlight.Rd | 12 unicol-0.4.0/unicol/man/edinburgh.Rd | 10 unicol-0.4.0/unicol/man/eth_1.Rd | 10 unicol-0.4.0/unicol/man/eth_2.Rd | 10 unicol-0.4.0/unicol/man/eth_3.Rd | 10 unicol-0.4.0/unicol/man/example.Rd | 10 unicol-0.4.0/unicol/man/figures/README-unicol-pals-example-1-figure-1.png |binary unicol-0.4.0/unicol/man/fu_0_2023.Rd |only unicol-0.4.0/unicol/man/fu_1.Rd | 41 unicol-0.4.0/unicol/man/fu_1_2023.Rd |only unicol-0.4.0/unicol/man/fu_2.Rd | 40 unicol-0.4.0/unicol/man/fu_2_2023.Rd |only unicol-0.4.0/unicol/man/fu_3.Rd | 39 unicol-0.4.0/unicol/man/fu_3_2023.Rd |only unicol-0.4.0/unicol/man/fu_4.Rd |only unicol-0.4.0/unicol/man/galway_1.Rd | 10 unicol-0.4.0/unicol/man/galway_2.Rd | 10 unicol-0.4.0/unicol/man/glasgow_1.Rd | 10 unicol-0.4.0/unicol/man/glasgow_2.Rd | 10 unicol-0.4.0/unicol/man/gothenburg.Rd | 12 unicol-0.4.0/unicol/man/groningen_1.Rd | 10 unicol-0.4.0/unicol/man/groningen_2.Rd | 10 unicol-0.4.0/unicol/man/guelph.Rd | 14 unicol-0.4.0/unicol/man/harvard_1.Rd | 10 unicol-0.4.0/unicol/man/harvard_2.Rd | 10 unicol-0.4.0/unicol/man/harvard_3.Rd | 10 unicol-0.4.0/unicol/man/helsinki_1.Rd | 14 unicol-0.4.0/unicol/man/helsinki_2.Rd | 14 unicol-0.4.0/unicol/man/helsinki_3.Rd | 14 unicol-0.4.0/unicol/man/hu_1.Rd | 16 unicol-0.4.0/unicol/man/hu_1_2022.Rd | 18 unicol-0.4.0/unicol/man/hu_1_digital.Rd | 16 unicol-0.4.0/unicol/man/hu_2.Rd | 16 unicol-0.4.0/unicol/man/hu_2_2022.Rd | 18 unicol-0.4.0/unicol/man/hu_3_accent.Rd | 16 unicol-0.4.0/unicol/man/jhu_0.Rd | 10 unicol-0.4.0/unicol/man/jhu_1.Rd | 10 unicol-0.4.0/unicol/man/jhu_2.Rd | 10 unicol-0.4.0/unicol/man/jhu_3_accent.Rd | 10 unicol-0.4.0/unicol/man/jhu_4_gray.Rd | 10 unicol-0.4.0/unicol/man/ku_1.Rd | 10 unicol-0.4.0/unicol/man/ku_2.Rd | 10 unicol-0.4.0/unicol/man/lancaster_1.Rd | 10 unicol-0.4.0/unicol/man/lancaster_2.Rd | 10 unicol-0.4.0/unicol/man/laval.Rd | 10 unicol-0.4.0/unicol/man/limerick_1.Rd | 10 unicol-0.4.0/unicol/man/limerick_2.Rd | 10 unicol-0.4.0/unicol/man/lmu_1.Rd | 16 unicol-0.4.0/unicol/man/lmu_2.Rd | 16 unicol-0.4.0/unicol/man/lmu_3.Rd | 16 unicol-0.4.0/unicol/man/lund_1.Rd | 10 unicol-0.4.0/unicol/man/lund_2.Rd | 10 unicol-0.4.0/unicol/man/lund_3.Rd | 10 unicol-0.4.0/unicol/man/manchester_uni_1.Rd | 12 unicol-0.4.0/unicol/man/manchester_uni_2.Rd | 12 unicol-0.4.0/unicol/man/manitoba_1.Rd | 12 unicol-0.4.0/unicol/man/manitoba_2.Rd | 12 unicol-0.4.0/unicol/man/maynooth.Rd | 10 unicol-0.4.0/unicol/man/mcgill_brights.Rd | 10 unicol-0.4.0/unicol/man/mcgill_darks.Rd | 10 unicol-0.4.0/unicol/man/mcgill_grey.Rd | 10 unicol-0.4.0/unicol/man/mcgill_muted.Rd | 10 unicol-0.4.0/unicol/man/mcgill_pastels.Rd | 10 unicol-0.4.0/unicol/man/mcgill_red.Rd | 10 unicol-0.4.0/unicol/man/mcmaster_brighterworld.Rd | 12 unicol-0.4.0/unicol/man/mcmaster_heritage.Rd | 12 unicol-0.4.0/unicol/man/michigan_1.Rd | 12 unicol-0.4.0/unicol/man/michigan_2.Rd | 12 unicol-0.4.0/unicol/man/minnesotatwin_1.Rd | 12 unicol-0.4.0/unicol/man/minnesotatwin_2.Rd | 12 unicol-0.4.0/unicol/man/mit.Rd | 10 unicol-0.4.0/unicol/man/monash_1.Rd | 10 unicol-0.4.0/unicol/man/monash_2.Rd | 10 unicol-0.4.0/unicol/man/mpg.Rd | 14 unicol-0.4.0/unicol/man/mq_1.Rd | 12 unicol-0.4.0/unicol/man/mq_2.Rd | 12 unicol-0.4.0/unicol/man/msu.Rd | 10 unicol-0.4.0/unicol/man/mun_1.Rd | 10 unicol-0.4.0/unicol/man/mun_2.Rd | 10 unicol-0.4.0/unicol/man/northwestern_1.Rd | 10 unicol-0.4.0/unicol/man/northwestern_2.Rd | 10 unicol-0.4.0/unicol/man/notredame_1.Rd | 10 unicol-0.4.0/unicol/man/notredame_2.Rd | 10 unicol-0.4.0/unicol/man/nottingham_1.Rd | 10 unicol-0.4.0/unicol/man/nottingham_2.Rd | 10 unicol-0.4.0/unicol/man/nottingham_3.Rd | 10 unicol-0.4.0/unicol/man/nyu_1.Rd | 10 unicol-0.4.0/unicol/man/nyu_2.Rd | 10 unicol-0.4.0/unicol/man/nyu_accent.Rd | 10 unicol-0.4.0/unicol/man/nyu_neutral.Rd | 10 unicol-0.4.0/unicol/man/ohio_uni_1.Rd | 10 unicol-0.4.0/unicol/man/ohio_uni_2.Rd | 10 unicol-0.4.0/unicol/man/oslo.Rd | 10 unicol-0.4.0/unicol/man/otago.Rd | 10 unicol-0.4.0/unicol/man/oxford_blog.Rd | 10 unicol-0.4.0/unicol/man/oxford_brand.Rd | 10 unicol-0.4.0/unicol/man/oxford_error.Rd | 10 unicol-0.4.0/unicol/man/oxford_general.Rd | 10 unicol-0.4.0/unicol/man/oxford_graduate.Rd | 10 unicol-0.4.0/unicol/man/oxford_link.Rd | 10 unicol-0.4.0/unicol/man/oxford_shades.Rd | 10 unicol-0.4.0/unicol/man/oxford_socialmedia.Rd | 10 unicol-0.4.0/unicol/man/pitt_1.Rd | 12 unicol-0.4.0/unicol/man/pitt_2.Rd | 12 unicol-0.4.0/unicol/man/princeton_0.Rd | 10 unicol-0.4.0/unicol/man/princeton_1.Rd | 10 unicol-0.4.0/unicol/man/princeton_2.Rd | 10 unicol-0.4.0/unicol/man/queensu_1.Rd | 10 unicol-0.4.0/unicol/man/queensu_2.Rd | 10 unicol-0.4.0/unicol/man/rpi_1.Rd | 12 unicol-0.4.0/unicol/man/rpi_2.Rd | 12 unicol-0.4.0/unicol/man/rpi_3.Rd | 12 unicol-0.4.0/unicol/man/rptu.Rd | 20 unicol-0.4.0/unicol/man/sfu_brand.Rd | 10 unicol-0.4.0/unicol/man/standrews_1.Rd | 10 unicol-0.4.0/unicol/man/standrews_2.Rd | 10 unicol-0.4.0/unicol/man/stanford_1.Rd | 10 unicol-0.4.0/unicol/man/stanford_2.Rd | 10 unicol-0.4.0/unicol/man/stanford_3.Rd | 10 unicol-0.4.0/unicol/man/stirling_1.Rd | 12 unicol-0.4.0/unicol/man/stirling_2.Rd | 16 unicol-0.4.0/unicol/man/stirling_3.Rd | 14 unicol-0.4.0/unicol/man/stockholm_1.Rd | 10 unicol-0.4.0/unicol/man/stockholm_2.Rd | 10 unicol-0.4.0/unicol/man/trinity_1.Rd | 10 unicol-0.4.0/unicol/man/trinity_2.Rd | 10 unicol-0.4.0/unicol/man/ubc.Rd | 10 unicol-0.4.0/unicol/man/ucalgary_1.Rd | 10 unicol-0.4.0/unicol/man/ucalgary_2.Rd | 10 unicol-0.4.0/unicol/man/ucalgary_accent.Rd | 10 unicol-0.4.0/unicol/man/ucalgary_warmgreys.Rd | 10 unicol-0.4.0/unicol/man/ucc_1.Rd | 20 unicol-0.4.0/unicol/man/ucc_2.Rd | 18 unicol-0.4.0/unicol/man/ucd.Rd | 16 unicol-0.4.0/unicol/man/uchicago_1.Rd | 10 unicol-0.4.0/unicol/man/uchicago_2.Rd | 10 unicol-0.4.0/unicol/man/uci_1.Rd | 12 unicol-0.4.0/unicol/man/uci_2.Rd | 12 unicol-0.4.0/unicol/man/uci_3.Rd | 12 unicol-0.4.0/unicol/man/uci_4.Rd | 12 unicol-0.4.0/unicol/man/ucla_1.Rd | 10 unicol-0.4.0/unicol/man/ucla_2.Rd | 10 unicol-0.4.0/unicol/man/ucla_3.Rd | 10 unicol-0.4.0/unicol/man/ucla_4.Rd | 10 unicol-0.4.0/unicol/man/ucsd_1.Rd | 10 unicol-0.4.0/unicol/man/ucsd_2.Rd | 10 unicol-0.4.0/unicol/man/ucsd_3.Rd | 10 unicol-0.4.0/unicol/man/uflorida_1.Rd | 10 unicol-0.4.0/unicol/man/uflorida_2.Rd | 10 unicol-0.4.0/unicol/man/uflorida_3.Rd | 10 unicol-0.4.0/unicol/man/umass_1.Rd | 10 unicol-0.4.0/unicol/man/umass_2.Rd | 10 unicol-0.4.0/unicol/man/umass_neutrals.Rd | 10 unicol-0.4.0/unicol/man/uni_bonn_1.Rd | 18 unicol-0.4.0/unicol/man/uni_bonn_2.Rd | 18 unicol-0.4.0/unicol/man/uni_freiburg_0.Rd | 18 unicol-0.4.0/unicol/man/uni_freiburg_1.Rd | 18 unicol-0.4.0/unicol/man/uni_freiburg_2.Rd | 18 unicol-0.4.0/unicol/man/uni_freiburg_blue.Rd | 16 unicol-0.4.0/unicol/man/uni_freiburg_br.Rd | 16 unicol-0.4.0/unicol/man/uni_freiburg_grey.Rd | 16 unicol-0.4.0/unicol/man/uni_freiburg_info.Rd | 16 unicol-0.4.0/unicol/man/uni_goettingen_1.Rd | 16 unicol-0.4.0/unicol/man/uni_goettingen_2.Rd | 16 unicol-0.4.0/unicol/man/uni_goettingen_3.Rd | 16 unicol-0.4.0/unicol/man/uni_halle.Rd | 16 unicol-0.4.0/unicol/man/uni_hamburg_1.Rd | 18 unicol-0.4.0/unicol/man/uni_hamburg_2.Rd | 16 unicol-0.4.0/unicol/man/uni_heidelberg.Rd | 16 unicol-0.4.0/unicol/man/uni_jena_1.Rd | 20 unicol-0.4.0/unicol/man/uni_jena_2.Rd | 18 unicol-0.4.0/unicol/man/uni_kassel.Rd | 18 unicol-0.4.0/unicol/man/uni_kiel_1.Rd | 18 unicol-0.4.0/unicol/man/uni_kiel_2.Rd | 18 unicol-0.4.0/unicol/man/uni_koeln_1.Rd | 16 unicol-0.4.0/unicol/man/uni_koeln_2.Rd | 16 unicol-0.4.0/unicol/man/uni_konstanz_1.Rd | 18 unicol-0.4.0/unicol/man/uni_konstanz_2.Rd | 18 unicol-0.4.0/unicol/man/uni_lisbon.Rd | 12 unicol-0.4.0/unicol/man/uni_magdeburg_1.Rd | 16 unicol-0.4.0/unicol/man/uni_magdeburg_2.Rd | 16 unicol-0.4.0/unicol/man/uni_magdeburg_3.Rd | 16 unicol-0.4.0/unicol/man/uni_manchester.Rd | 10 unicol-0.4.0/unicol/man/uni_mannheim_1.Rd | 18 unicol-0.4.0/unicol/man/uni_mannheim_2.Rd | 16 unicol-0.4.0/unicol/man/uni_potsdam.Rd | 18 unicol-0.4.0/unicol/man/uni_regensburg_1.Rd | 18 unicol-0.4.0/unicol/man/uni_regensburg_2.Rd | 18 unicol-0.4.0/unicol/man/uni_regensburg_3.Rd | 18 unicol-0.4.0/unicol/man/uni_stuttgart_1.Rd | 16 unicol-0.4.0/unicol/man/uni_stuttgart_print.Rd | 16 unicol-0.4.0/unicol/man/uni_ulm_1.Rd | 18 unicol-0.4.0/unicol/man/uni_ulm_2.Rd | 18 unicol-0.4.0/unicol/man/unicol_data.Rd | 12 unicol-0.4.0/unicol/man/uottawa.Rd | 10 unicol-0.4.0/unicol/man/upenn_1.Rd | 10 unicol-0.4.0/unicol/man/upenn_2.Rd | 10 unicol-0.4.0/unicol/man/uppsala.Rd | 12 unicol-0.4.0/unicol/man/utoronto.Rd | 10 unicol-0.4.0/unicol/man/uvic_1.Rd | 12 unicol-0.4.0/unicol/man/uvic_2.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_arts.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_engineering.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_environment.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_health.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_main.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_math.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_science.Rd | 12 unicol-0.4.0/unicol/man/vanderbilt_1.Rd | 10 unicol-0.4.0/unicol/man/vanderbilt_2.Rd | 10 unicol-0.4.0/unicol/man/vanderbilt_3.Rd | 10 unicol-0.4.0/unicol/man/waikato.Rd | 10 unicol-0.4.0/unicol/man/western_uni.Rd | 10 unicol-0.4.0/unicol/man/willamette.Rd | 10 unicol-0.4.0/unicol/man/wm_1.Rd | 10 unicol-0.4.0/unicol/man/wm_2.Rd | 10 unicol-0.4.0/unicol/man/wm_3.Rd | 10 unicol-0.4.0/unicol/man/wollongong_1.Rd | 10 unicol-0.4.0/unicol/man/wollongong_2.Rd | 10 unicol-0.4.0/unicol/man/yale.Rd | 10 unicol-0.4.0/unicol/man/yeshiva.Rd | 10 unicol-0.4.0/unicol/man/yorku_1.Rd | 10 unicol-0.4.0/unicol/man/yorku_2.Rd | 10 unicol-0.4.0/unicol/vignettes/color_pals.Rmd | 54 unicol-0.4.0/unicol/vignettes/using_pals.Rmd | 1 412 files changed, 4471 insertions(+), 3877 deletions(-)
Title: General Purpose 'GraphQL' Client
Description: A 'GraphQL' client, with an R6 interface for initializing a
connection to a 'GraphQL' instance, and methods for constructing
queries, including fragments and parameterized queries. Queries are
checked with the 'libgraphqlparser' C++ parser via the 'graphql'
package.
Author: Scott Chamberlain [aut] ,
Mark Padgham [aut, cre]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between ghql versions 0.1.0 dated 2020-03-04 and 0.1.2 dated 2025-09-02
ghql-0.1.0/ghql/README.md |only ghql-0.1.2/ghql/DESCRIPTION | 45 ++++--- ghql-0.1.2/ghql/LICENSE | 4 ghql-0.1.2/ghql/MD5 | 23 +--- ghql-0.1.2/ghql/R/client.R | 34 +++--- ghql-0.1.2/ghql/R/ghql-package.R | 2 ghql-0.1.2/ghql/R/query-class.R | 2 ghql-0.1.2/ghql/R/zzz.R | 10 + ghql-0.1.2/ghql/man/Fragment.Rd | 10 + ghql-0.1.2/ghql/man/GraphqlClient.Rd | 58 ++++++---- ghql-0.1.2/ghql/man/Query.Rd | 22 ++- ghql-0.1.2/ghql/man/ghql-package.Rd | 9 + ghql-0.1.2/ghql/tests/testthat/test-GraphqlClient.R | 113 +++++++++++++++++++- 13 files changed, 248 insertions(+), 84 deletions(-)
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny).
The 'DataTables' library has been included in this R package. The
package name 'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut],
Joe Cheng [aut],
Xianying Tan [aut],
Garrick Aden-Buie [aut, cre] ,
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
SpryMedia Limited [ctb, cph] ,
Brian Reavis [ctb, cph] ,
Leon Gersen [ctb [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between DT versions 0.33 dated 2024-04-04 and 0.34.0 dated 2025-09-02
DT-0.33/DT/inst/examples/DT-click/rsconnect |only DT-0.33/DT/inst/examples/DT-edit/rsconnect |only DT-0.33/DT/inst/examples/DT-filter/rsconnect |only DT-0.33/DT/inst/examples/DT-info/rsconnect |only DT-0.33/DT/inst/examples/DT-proxy/rsconnect |only DT-0.33/DT/inst/examples/DT-radio/rsconnect |only DT-0.33/DT/inst/examples/DT-rows/rsconnect |only DT-0.33/DT/inst/examples/DT-scroller/rsconnect |only DT-0.33/DT/inst/examples/DT-scroller/www |only DT-0.33/DT/inst/examples/DT-selection/rsconnect |only DT-0.34.0/DT/DESCRIPTION | 62 ++-- DT-0.34.0/DT/LICENSE | 305 ------------------------ DT-0.34.0/DT/LICENSE.note |only DT-0.34.0/DT/MD5 | 51 +--- DT-0.34.0/DT/R/datatables.R | 226 +++++++++-------- DT-0.34.0/DT/R/format.R | 96 +++---- DT-0.34.0/DT/R/shiny.R | 142 +++++------ DT-0.34.0/DT/R/utils.R | 26 +- DT-0.34.0/DT/build/vignette.rds |binary DT-0.34.0/DT/inst/doc/DT.html | 30 +- DT-0.34.0/DT/inst/htmlwidgets/datatables.js | 2 DT-0.34.0/DT/man/coerceValue.Rd | 16 - DT-0.34.0/DT/man/dataTableAjax.Rd | 10 DT-0.34.0/DT/man/dataTableOutput.Rd | 17 - DT-0.34.0/DT/man/datatable.Rd | 207 ++++++++-------- DT-0.34.0/DT/man/doColumnSearch.Rd | 14 - DT-0.34.0/DT/man/editData.Rd | 6 DT-0.34.0/DT/man/formatCurrency.Rd | 19 - DT-0.34.0/DT/man/proxy.Rd | 21 - DT-0.34.0/DT/man/replaceData.Rd | 20 - DT-0.34.0/DT/man/styleInterval.Rd | 5 DT-0.34.0/DT/man/tableHeader.Rd | 2 32 files changed, 498 insertions(+), 779 deletions(-)
Title: Bayesian Dynamic Systems Modeling
Description: Implements methods for building and analyzing models based on panel
data as described in the paper by
Moral-Benito (2013, <doi:10.1080/07350015.2013.818003>).
The package provides functions to estimate dynamic panel data models
and analyze the results of the estimation.
Author: Mateusz Wyszynski [aut],
Marcin Dubel [ctb, cre],
Krzysztof Beck [ctb]
Maintainer: Marcin Dubel <marcindubel@gmail.com>
Diff between bdsm versions 0.2.1 dated 2025-05-02 and 0.2.2 dated 2025-09-02
bdsm-0.2.1/bdsm/vignettes/apalike.bst |only bdsm-0.2.2/bdsm/DESCRIPTION | 6 bdsm-0.2.2/bdsm/MD5 | 42 ++--- bdsm-0.2.2/bdsm/NEWS.md | 10 + bdsm-0.2.2/bdsm/R/bma.R | 9 - bdsm-0.2.2/bdsm/R/coef_hist.R | 8 - bdsm-0.2.2/bdsm/R/data.R | 6 bdsm-0.2.2/bdsm/R/jointness.R | 2 bdsm-0.2.2/bdsm/R/model_space.R | 4 bdsm-0.2.2/bdsm/README.md | 24 --- bdsm-0.2.2/bdsm/data/full_bma_results.rda |only bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.R | 94 ++++++------ bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.Rnw | 12 - bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.pdf |binary bdsm-0.2.2/bdsm/man/full_bma_results.Rd |only bdsm-0.2.2/bdsm/man/jointness.Rd | 2 bdsm-0.2.2/bdsm/man/optim_model_space.Rd | 2 bdsm-0.2.2/bdsm/man/optim_model_space_params.Rd | 2 bdsm-0.2.2/bdsm/tests/testthat/Rplots.pdf |only bdsm-0.2.2/bdsm/tests/testthat/helper-data_generator.R | 16 +- bdsm-0.2.2/bdsm/tests/testthat/test-SEM_likelihood.R | 31 --- bdsm-0.2.2/bdsm/tests/testthat/test-coef_hist.R | 8 - bdsm-0.2.2/bdsm/tests/testthat/test-model_space.R | 133 ++++++++++++++--- bdsm-0.2.2/bdsm/vignettes/bdsm_vignette.Rnw | 12 - 24 files changed, 249 insertions(+), 174 deletions(-)
Title: Visualizing Changes in Performance Measures and Demographic
Affiliations using Animation
Description: Create an interactive visualization to be used for communication purposes. Providing the function for preparing, plotting, and animating the data. Krisanat Anukarnsakulchularp (2023) <https://github.com/KrisanatA/animbook-journal>.
Author: Krisanat Anukarnsakulchularp [aut, cre, cph] ,
Dianne Cook [aut]
Maintainer: Krisanat Anukarnsakulchularp <krisanat.anu@gmail.com>
Diff between animbook versions 1.0.0 dated 2023-12-05 and 1.0.1 dated 2025-09-02
animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-2-1.gif |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-1.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-2.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-3.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-6-1.gif |only animbook-1.0.0/animbook/vignettes/figures |only animbook-1.0.1/animbook/DESCRIPTION | 18 animbook-1.0.1/animbook/LICENSE | 4 animbook-1.0.1/animbook/MD5 | 68 animbook-1.0.1/animbook/NAMESPACE | 30 animbook-1.0.1/animbook/NEWS.md | 6 animbook-1.0.1/animbook/R/anim-animate.R | 8 animbook-1.0.1/animbook/R/anim-prep.R | 4 animbook-1.0.1/animbook/R/data.R | 2 animbook-1.0.1/animbook/R/kangaroo-plot.R | 3 animbook-1.0.1/animbook/R/wallaby-plot.R | 3 animbook-1.0.1/animbook/README.md | 366 +-- animbook-1.0.1/animbook/build/vignette.rds |binary animbook-1.0.1/animbook/inst/doc/animbook.R | 145 - animbook-1.0.1/animbook/inst/doc/animbook.Rmd | 6 animbook-1.0.1/animbook/inst/doc/animbook.html | 998 +++++----- animbook-1.0.1/animbook/man/aeles.Rd | 58 animbook-1.0.1/animbook/man/anim_animate.Rd | 58 animbook-1.0.1/animbook/man/anim_prep.Rd | 142 - animbook-1.0.1/animbook/man/anim_prep_cat.Rd | 94 animbook-1.0.1/animbook/man/cat_change.Rd | 60 animbook-1.0.1/animbook/man/dbl_change.Rd | 60 animbook-1.0.1/animbook/man/figures/README-unnamed-chunk-3-1.gif |binary animbook-1.0.1/animbook/man/figures/README-unnamed-chunk-4-1.gif |only animbook-1.0.1/animbook/man/figures/logo.png |only animbook-1.0.1/animbook/man/funnel_web_plot.Rd | 70 animbook-1.0.1/animbook/man/funnel_web_spider_data.Rd | 44 animbook-1.0.1/animbook/man/kangaroo_data.Rd | 74 animbook-1.0.1/animbook/man/kangaroo_plot.Rd | 110 - animbook-1.0.1/animbook/man/osiris.Rd | 60 animbook-1.0.1/animbook/man/sigmoid.Rd | 82 animbook-1.0.1/animbook/man/sine.Rd | 76 animbook-1.0.1/animbook/man/wallaby_data.Rd | 110 - animbook-1.0.1/animbook/vignettes/animbook.Rmd | 6 39 files changed, 1314 insertions(+), 1451 deletions(-)
Title: Write and Render 'Typst' Documents
Description: Compile 'Typst' files using the 'typst-cli' (<https://typst.app>)
command line tool. Automatically falls back to rendering via embedded 'Typst'
from 'Quarto' (<https://quarto.org>) if 'Typst' is not installed. Includes
utilities to check for 'typst-cli' availability and run 'Typst' commands.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between typr versions 0.0.3 dated 2025-05-30 and 0.0.4 dated 2025-09-02
DESCRIPTION | 10 - LICENSE | 4 MD5 | 46 ++++---- NAMESPACE | 36 +++--- NEWS.md | 10 + R/aaa.R | 4 R/background.R | 62 +++++------ R/fonts.R | 22 ++-- R/query.R | 6 - R/watch.R | 242 ++++++++++++++++++++++---------------------- man/find_typst.Rd | 76 ++++++------- man/typr_compile.Rd | 74 ++++++------- man/typr_fonts.Rd | 38 +++--- man/typr_help.Rd | 46 ++++---- man/typr_init.Rd | 58 +++++----- man/typr_query.Rd | 2 man/typr_version.Rd | 44 ++++---- man/typr_watch.Rd | 78 +++++++------- man/typr_which_typst.Rd | 34 +++--- tests/test.pdf |binary tests/test.typ | 26 ++-- tests/testthat/setup.R | 38 +++--- tests/testthat/test-init.R | 20 +-- tests/testthat/test-query.R | 22 ++-- 24 files changed, 501 insertions(+), 497 deletions(-)
More information about StreamCatTools at CRAN
Permanent link
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system to
implement a complete data-to-decisions, reproducible workflow.
The core components facilitate the development of modular pieces,
and enable the user to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the within-project dependencies.
The suggested package 'NLMR' can be installed from the repository
(<https://PredictiveEcology.r-universe.dev>).
Author: Alex M Chubaty [aut] ,
Eliot J B McIntire [aut, cre] ,
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between SpaDES.core versions 2.1.0 dated 2024-06-02 and 2.1.6 dated 2025-09-02
SpaDES.core-2.1.0/SpaDES.core/man/newModuleCode.Rd |only SpaDES.core-2.1.0/SpaDES.core/man/newModuleDocumentation.Rd |only SpaDES.core-2.1.6/SpaDES.core/DESCRIPTION | 27 SpaDES.core-2.1.6/SpaDES.core/MD5 | 143 ++-- SpaDES.core-2.1.6/SpaDES.core/NAMESPACE | 9 SpaDES.core-2.1.6/SpaDES.core/NEWS.md | 26 SpaDES.core-2.1.6/SpaDES.core/R/Plots.R | 64 + SpaDES.core-2.1.6/SpaDES.core/R/cache.R | 74 ++ SpaDES.core-2.1.6/SpaDES.core/R/convertToPackage.R | 176 +++-- SpaDES.core-2.1.6/SpaDES.core/R/copy.R | 32 SpaDES.core-2.1.6/SpaDES.core/R/downloadData.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/helpers.R | 5 SpaDES.core-2.1.6/SpaDES.core/R/misc-methods.R | 18 SpaDES.core-2.1.6/SpaDES.core/R/module-dependencies-methods.R | 2 SpaDES.core-2.1.6/SpaDES.core/R/module-repository.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/module-template.R | 162 ++-- SpaDES.core-2.1.6/SpaDES.core/R/moduleMetadata.R | 6 SpaDES.core-2.1.6/SpaDES.core/R/paths.R | 2 SpaDES.core-2.1.6/SpaDES.core/R/plotting-diagrams.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/restart.R | 5 SpaDES.core-2.1.6/SpaDES.core/R/saveLoadSimList.R | 3 SpaDES.core-2.1.6/SpaDES.core/R/simList-accessors.R | 34 - SpaDES.core-2.1.6/SpaDES.core/R/simList-class.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/simulation-simInit.R | 33 SpaDES.core-2.1.6/SpaDES.core/R/simulation-spades.R | 31 SpaDES.core-2.1.6/SpaDES.core/R/spades-core-package.R | 56 - SpaDES.core-2.1.6/SpaDES.core/R/times.R | 3 SpaDES.core-2.1.6/SpaDES.core/build/vignette.rds |binary SpaDES.core-2.1.6/SpaDES.core/inst/WORDLIST | 25 SpaDES.core-2.1.6/SpaDES.core/inst/doc/i-introduction.R | 102 +-- SpaDES.core-2.1.6/SpaDES.core/inst/doc/i-introduction.html | 8 SpaDES.core-2.1.6/SpaDES.core/inst/doc/ii-modules.R | 176 ++--- SpaDES.core-2.1.6/SpaDES.core/inst/doc/ii-modules.html | 63 - SpaDES.core-2.1.6/SpaDES.core/inst/doc/iii-cache.R | 16 SpaDES.core-2.1.6/SpaDES.core/inst/doc/iii-cache.html | 340 ++++------ SpaDES.core-2.1.6/SpaDES.core/inst/doc/iv-advanced.R | 22 SpaDES.core-2.1.6/SpaDES.core/inst/doc/iv-advanced.html | 4 SpaDES.core-2.1.6/SpaDES.core/inst/doc/v-automated-testing.html | 4 SpaDES.core-2.1.6/SpaDES.core/inst/sampleModules/fireSpread/fireSpread.R | 17 SpaDES.core-2.1.6/SpaDES.core/inst/templates/module.Rmd.template | 11 SpaDES.core-2.1.6/SpaDES.core/inst/templates/render-module-rmd.yaml.template | 45 - SpaDES.core-2.1.6/SpaDES.core/man/Copy.Rd | 8 SpaDES.core-2.1.6/SpaDES.core/man/FilterRecursive.Rd |only SpaDES.core-2.1.6/SpaDES.core/man/Plots.Rd | 34 - SpaDES.core-2.1.6/SpaDES.core/man/SpaDES.core-package.Rd | 46 - SpaDES.core-2.1.6/SpaDES.core/man/all.equal.simList.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/checkModulePath.Rd |only SpaDES.core-2.1.6/SpaDES.core/man/dealWithClass.Rd | 12 SpaDES.core-2.1.6/SpaDES.core/man/depsLoadOrder.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/downloadData.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/emptyEventList.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/moduleDiagram.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/moduleGraph.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/newModule.Rd | 81 ++ SpaDES.core-2.1.6/SpaDES.core/man/newModuleTests.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/robustDigest.Rd | 6 SpaDES.core-2.1.6/SpaDES.core/man/setPaths.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/simInit.Rd | 5 SpaDES.core-2.1.6/SpaDES.core/man/simInitAndSpades.Rd | 10 SpaDES.core-2.1.6/SpaDES.core/man/simList-accessors-events.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/simList-class.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/spades.Rd | 12 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-Plots.R | 7 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-cache.R | 22 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-downloadModule.R | 2 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-load.R | 41 + SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-misc.R | 76 ++ SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-mod.R | 4 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-module-deps-methods.R | 5 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-module-template.R | 124 +++ SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-parallel.R |only SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-simList.R | 6 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-simulation.R | 5 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-timeunits.R | 169 ++-- SpaDES.core-2.1.6/SpaDES.core/vignettes/bibliography.bib | 2 75 files changed, 1534 insertions(+), 929 deletions(-)
Title: An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<https://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut],
Caspar van Lissa [ctb],
Daniel Morillo [ctb]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 1.1.1 dated 2024-01-30 and 1.2 dated 2025-09-02
MplusAutomation-1.1.1/MplusAutomation/man/l_getSavedata_readRawFile.Rd |only MplusAutomation-1.2/MplusAutomation/DESCRIPTION | 10 MplusAutomation-1.2/MplusAutomation/MD5 | 267 ++-- MplusAutomation-1.2/MplusAutomation/NAMESPACE | 19 MplusAutomation-1.2/MplusAutomation/NEWS | 21 MplusAutomation-1.2/MplusAutomation/R/MplusAutomation.R | 25 MplusAutomation-1.2/MplusAutomation/R/compareModels.R | 114 + MplusAutomation-1.2/MplusAutomation/R/createModels.R | 8 MplusAutomation-1.2/MplusAutomation/R/data.R | 42 MplusAutomation-1.2/MplusAutomation/R/extractAuxDis.R | 50 MplusAutomation-1.2/MplusAutomation/R/extractEFAparameters.R | 1 MplusAutomation-1.2/MplusAutomation/R/extractIndirect.R | 6 MplusAutomation-1.2/MplusAutomation/R/extractModIndices.R | 26 MplusAutomation-1.2/MplusAutomation/R/extractParameters.R | 247 ++- MplusAutomation-1.2/MplusAutomation/R/extractSaveData.R | 213 +-- MplusAutomation-1.2/MplusAutomation/R/graphModels.R | 2 MplusAutomation-1.2/MplusAutomation/R/mixtures.R | 31 MplusAutomation-1.2/MplusAutomation/R/mplus.R | 58 MplusAutomation-1.2/MplusAutomation/R/mplusModel.R |only MplusAutomation-1.2/MplusAutomation/R/parseOutput.R | 191 +- MplusAutomation-1.2/MplusAutomation/R/prepareMplusData.R | 36 MplusAutomation-1.2/MplusAutomation/R/readModels.R | 242 ++- MplusAutomation-1.2/MplusAutomation/R/runModels.R | 70 - MplusAutomation-1.2/MplusAutomation/R/submitModels.R |only MplusAutomation-1.2/MplusAutomation/R/summary.R | 650 +++++----- MplusAutomation-1.2/MplusAutomation/R/utilityFunctions.R | 195 ++- MplusAutomation-1.2/MplusAutomation/build/vignette.rds |binary MplusAutomation-1.2/MplusAutomation/inst/doc/submitModels.R |only MplusAutomation-1.2/MplusAutomation/inst/doc/submitModels.Rmd |only MplusAutomation-1.2/MplusAutomation/inst/doc/submitModels.html |only MplusAutomation-1.2/MplusAutomation/inst/doc/vignette.R | 454 +++--- MplusAutomation-1.2/MplusAutomation/inst/doc/vignette.Rmd | 244 ++- MplusAutomation-1.2/MplusAutomation/inst/doc/vignette.html | 523 +++----- MplusAutomation-1.2/MplusAutomation/man/HTMLSummaryTable.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/LatexSummaryTable.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/MplusAutomation.Rd | 73 - MplusAutomation-1.2/MplusAutomation/man/MplusAutomationUtils.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/OS.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/SummaryTable.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/cd.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/checkSubmission.Rd |only MplusAutomation-1.2/MplusAutomation/man/coef.mplus.model.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/compareModels.Rd | 78 - MplusAutomation-1.2/MplusAutomation/man/confint.mplus.model.Rd | 6 MplusAutomation-1.2/MplusAutomation/man/convert_to_filelist.Rd |only MplusAutomation-1.2/MplusAutomation/man/createMixtures.Rd | 6 MplusAutomation-1.2/MplusAutomation/man/createSyntax.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/detectColumnNames.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/detectMplus.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/detectVariables.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/dhms_to_hours.Rd |only MplusAutomation-1.2/MplusAutomation/man/dot-convertData.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/dot-mplusMultinomial.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/expandCmd.Rd |only MplusAutomation-1.2/MplusAutomation/man/extract.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/extractEFAparameters.Rd | 1 MplusAutomation-1.2/MplusAutomation/man/extractInput_1file.Rd | 3 MplusAutomation-1.2/MplusAutomation/man/extractModIndices.Rd | 37 MplusAutomation-1.2/MplusAutomation/man/extractModelParameters.Rd | 61 MplusAutomation-1.2/MplusAutomation/man/extractModelSummaries.Rd | 108 - MplusAutomation-1.2/MplusAutomation/man/extractR3step.Rd |only MplusAutomation-1.2/MplusAutomation/man/extractWarningsErrors_1file.Rd | 6 MplusAutomation-1.2/MplusAutomation/man/filter_inp_filelist.Rd |only MplusAutomation-1.2/MplusAutomation/man/friendlyGregexpr.Rd | 11 MplusAutomation-1.2/MplusAutomation/man/getOutFileList.Rd | 12 MplusAutomation-1.2/MplusAutomation/man/getSavedata_Bparams.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/getSavedata_Data.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/getSavedata_Fileinfo.Rd | 21 MplusAutomation-1.2/MplusAutomation/man/getSavedata_readRawFile.Rd |only MplusAutomation-1.2/MplusAutomation/man/get_job_status.Rd |only MplusAutomation-1.2/MplusAutomation/man/htmlout.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/l_getSavedata_Fileinfo.Rd | 19 MplusAutomation-1.2/MplusAutomation/man/lcademo.Rd | 24 MplusAutomation-1.2/MplusAutomation/man/minutes_to_dhms.Rd |only MplusAutomation-1.2/MplusAutomation/man/mplus.traceplot.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/mplusGLM.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/mplusModel.Rd |only MplusAutomation-1.2/MplusAutomation/man/mplusModel_r6.Rd |only MplusAutomation-1.2/MplusAutomation/man/mplusModeler.Rd | 16 MplusAutomation-1.2/MplusAutomation/man/mplusObject.Rd | 46 MplusAutomation-1.2/MplusAutomation/man/mplusRcov.Rd | 90 - MplusAutomation-1.2/MplusAutomation/man/paramExtract.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/parseMplus.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/parseMplusSyntax.Rd |only MplusAutomation-1.2/MplusAutomation/man/parseTags.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/plot.mplusObject.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/plotGrowthMixtures.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/plotLTA.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/plotMixtureDensities.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/plotMixtures.Rd | 5 MplusAutomation-1.2/MplusAutomation/man/prepareMplusData.Rd | 13 MplusAutomation-1.2/MplusAutomation/man/print.MplusRstructure.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/readModels.Rd | 75 - MplusAutomation-1.2/MplusAutomation/man/rmVarWarnings.Rd | 8 MplusAutomation-1.2/MplusAutomation/man/runModels.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/showSummaryTable.Rd | 4 MplusAutomation-1.2/MplusAutomation/man/slurm_job_status.Rd |only MplusAutomation-1.2/MplusAutomation/man/splitFilePath.Rd | 10 MplusAutomation-1.2/MplusAutomation/man/submitModels.Rd |only MplusAutomation-1.2/MplusAutomation/man/summary.mplusObject.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/summary.mplus_submission_df.Rd |only MplusAutomation-1.2/MplusAutomation/man/torque_job_status.Rd |only MplusAutomation-1.2/MplusAutomation/man/update.mplusObject.Rd | 2 MplusAutomation-1.2/MplusAutomation/man/validate_dhms.Rd |only MplusAutomation-1.2/MplusAutomation/tests/testthat/data_iris_1c191ab8015e5d6588352d42877bce1e.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/ex3.1_mplusmodel.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/ex3.1_mplusmodel.inp |only MplusAutomation-1.2/MplusAutomation/tests/testthat/ex3.1_mplusmodel.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/ex3.1_mplusmodel_modeltest.inp |only MplusAutomation-1.2/MplusAutomation/tests/testthat/ex3.1_mplusmodel_modeltest.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_1.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_1_class.inp |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_1_class.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_2.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_2_class.inp |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_2_class.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_3.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_3_class.inp |only MplusAutomation-1.2/MplusAutomation/tests/testthat/iris_3_class.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/issue217.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/mplus_batch_files |only MplusAutomation-1.2/MplusAutomation/tests/testthat/mplus_ug/8.11 |only MplusAutomation-1.2/MplusAutomation/tests/testthat/mplus_ug/8.9/ch3/ex3.1.dat |only MplusAutomation-1.2/MplusAutomation/tests/testthat/nbh_indirect.out |only MplusAutomation-1.2/MplusAutomation/tests/testthat/submitModels |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-compareModels.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-expandCmd.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-issue158_createmixtures.R | 1 MplusAutomation-1.2/MplusAutomation/tests/testthat/test-issue217.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-mplusModel.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-submitModels.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/test-ug-ch3.R | 23 MplusAutomation-1.2/MplusAutomation/tests/testthat/test_prepare_longpath.R |only MplusAutomation-1.2/MplusAutomation/tests/testthat/testthat-problems.rds |only MplusAutomation-1.2/MplusAutomation/vignettes/submitModels.Rmd |only MplusAutomation-1.2/MplusAutomation/vignettes/vignette.Rmd | 244 ++- 136 files changed, 2668 insertions(+), 2186 deletions(-)
More information about MplusAutomation at CRAN
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Title: Joint Sparse Regression & Network Learning with Missing Data
Description: Simultaneously estimates sparse regression coefficients and
response network structure in multivariate models with missing data.
Unlike traditional approaches requiring imputation, handles
missingness natively through unbiased estimating equations (MCAR/MAR
compatible). Employs dual L1 regularization with automated selection
via cross-validation or information criteria. Includes parallel
computation, warm starts, adaptive grids, publication-ready
visualizations, and prediction methods. Ideal for genomics,
neuroimaging, and multi-trait studies with incomplete high-dimensional
outcomes. See Zeng et al. (2025) <doi:10.48550/arXiv.2507.05990>.
Author: Yixiao Zeng [aut, cre, cph],
Celia Greenwood [ths, aut]
Maintainer: Yixiao Zeng <yixiao.zeng@mail.mcgill.ca>
Diff between missoNet versions 1.2.0 dated 2023-07-19 and 1.5.1 dated 2025-09-02
missoNet-1.2.0/missoNet/R/boundaryCheck.R |only missoNet-1.2.0/missoNet/R/getResCov.R |only missoNet-1.2.0/missoNet/R/maxproj.cov.R |only missoNet-1.2.0/missoNet/R/plot.cv.missoNet.R |only missoNet-1.2.0/missoNet/R/plot.heatmap.R |only missoNet-1.2.0/missoNet/R/plot.scatter.R |only missoNet-1.2.0/missoNet/R/predict.cv.missoNet.R |only missoNet-1.2.0/missoNet/R/simfun.R |only missoNet-1.2.0/missoNet/inst/doc/missoNet.R |only missoNet-1.2.0/missoNet/inst/doc/missoNet.Rmd |only missoNet-1.2.0/missoNet/inst/doc/missoNet.html |only missoNet-1.2.0/missoNet/inst/extdata |only missoNet-1.2.0/missoNet/man/plot.cv.missoNet.Rd |only missoNet-1.2.0/missoNet/man/predict.cv.missoNet.Rd |only missoNet-1.2.0/missoNet/src/updateBeta.cpp |only missoNet-1.2.0/missoNet/vignettes/missoNet.Rmd |only missoNet-1.2.0/missoNet/vignettes/missoNet_refs.bib |only missoNet-1.5.1/missoNet/DESCRIPTION | 60 missoNet-1.5.1/missoNet/MD5 | 86 missoNet-1.5.1/missoNet/NAMESPACE | 18 missoNet-1.5.1/missoNet/NEWS.md | 65 missoNet-1.5.1/missoNet/R/InitLambda.R | 334 ++- missoNet-1.5.1/missoNet/R/InitParams.R | 341 ++- missoNet-1.5.1/missoNet/R/RcppExports.R | 64 missoNet-1.5.1/missoNet/R/cv.missoNet.R | 1104 ++++++---- missoNet-1.5.1/missoNet/R/generateData.R | 538 ++++ missoNet-1.5.1/missoNet/R/helpers.R |only missoNet-1.5.1/missoNet/R/missoNet-package.R | 84 missoNet-1.5.1/missoNet/R/missoNet.R | 799 +++++-- missoNet-1.5.1/missoNet/R/parWrapper.R | 234 +- missoNet-1.5.1/missoNet/R/plot.missoNet.R |only missoNet-1.5.1/missoNet/R/predict.missoNet.R |only missoNet-1.5.1/missoNet/R/relax.glasso.R | 218 + missoNet-1.5.1/missoNet/R/stepOptim.R |only missoNet-1.5.1/missoNet/R/update.missoNet.R | 450 +++- missoNet-1.5.1/missoNet/README.md | 191 + missoNet-1.5.1/missoNet/build/vignette.rds |binary missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.html |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.html |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.html |only missoNet-1.5.1/missoNet/man/cv.missoNet.Rd | 338 +-- missoNet-1.5.1/missoNet/man/generateData.Rd | 220 + missoNet-1.5.1/missoNet/man/missoNet-package.Rd | 85 missoNet-1.5.1/missoNet/man/missoNet.Rd | 282 +- missoNet-1.5.1/missoNet/man/plot.missoNet.Rd |only missoNet-1.5.1/missoNet/man/predict.missoNet.Rd |only missoNet-1.5.1/missoNet/src/RcppExports.cpp | 242 ++ missoNet-1.5.1/missoNet/src/Utils.cpp |only missoNet-1.5.1/missoNet/src/admm_proj.cpp |only missoNet-1.5.1/missoNet/src/updaBeta.cpp |only missoNet-1.5.1/missoNet/vignettes/missoNet-case-study.Rmd |only missoNet-1.5.1/missoNet/vignettes/missoNet-cross-validation.Rmd |only missoNet-1.5.1/missoNet/vignettes/missoNet-introduction.Rmd |only 59 files changed, 4246 insertions(+), 1507 deletions(-)
Title: Irucka Embry's Miscellaneous USGS Functions
Description: A collection of Irucka Embry's miscellaneous USGS functions
(processing .exp and .psf files, statistical error functions,
"+" dyadic operator for use with NA, creating ADAPS and QW
spreadsheet files, calculating saturated enthalpy). Irucka created these
functions while a Cherokee Nation Technology Solutions (CNTS) United States
Geological Survey (USGS) Contractor and/or USGS employee.
Author: Irucka Embry [aut, cre],
Anne Hoos [ctb],
Timothy H. Diehl [ctb]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between ie2misc versions 0.9.1 dated 2023-09-20 and 0.9.2 dated 2025-09-02
DESCRIPTION | 22 ++++++++++++---- MD5 | 58 +++++++++++++++++++++---------------------- NEWS.md | 10 ++++++- R/adaps.R | 2 - R/dr.R | 6 ++-- R/expFileOutput.R | 4 +- R/madstat.R | 12 ++++---- R/mae.R | 6 ++-- R/mape.R | 6 ++-- R/na_operator.R | 4 +- R/psfFileChange.R | 4 +- R/qw.R | 2 - R/rmse.R | 6 ++-- R/sat_enthalpy.R | 4 +- R/vnse.R | 6 ++-- README.md | 40 +++++++++++++++++++++++------ inst/WORDLIST | 2 + man/adaps.Rd | 2 - man/dr.Rd | 6 ++-- man/expFileOutput.Rd | 4 +- man/grapes-plus-na-grapes.Rd | 4 +- man/ie2misc.Rd | 12 ++++++++ man/madstat.Rd | 12 ++++---- man/mae.Rd | 6 ++-- man/mape.Rd | 6 ++-- man/psfFileChange.Rd | 4 +- man/qw.Rd | 2 - man/rmse.Rd | 6 ++-- man/sat_enthalpy.Rd | 4 +- man/vnse.Rd | 6 ++-- 30 files changed, 162 insertions(+), 106 deletions(-)
Title: Scales that Focus Specific Levels in your ggplot()
Description: A 'ggplot2' extension that provides tools for automatically
creating scales to focus on subgroups of the data plotted
without losing other information.
Author: Victor Freguglia [aut, cre]
Maintainer: Victor Freguglia <victorfreguglia@gmail.com>
Diff between ggfocus versions 1.0.0 dated 2020-01-23 and 1.0.1 dated 2025-09-02
ggfocus-1.0.0/ggfocus/R/ggfocus.R |only ggfocus-1.0.0/ggfocus/man/ggfocus.Rd |only ggfocus-1.0.0/ggfocus/man/reexports.Rd |only ggfocus-1.0.1/ggfocus/DESCRIPTION | 16 ggfocus-1.0.1/ggfocus/MD5 | 42 - ggfocus-1.0.1/ggfocus/NAMESPACE | 5 ggfocus-1.0.1/ggfocus/NEWS.md | 4 ggfocus-1.0.1/ggfocus/R/scale_alpha_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_color_focus.R | 9 ggfocus-1.0.1/ggfocus/R/scale_fill_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_linetype_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_shape_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_size_focus.R | 8 ggfocus-1.0.1/ggfocus/R/zzz.R | 6 ggfocus-1.0.1/ggfocus/README.md | 117 +- ggfocus-1.0.1/ggfocus/build/vignette.rds |binary ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.R | 32 ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.Rmd | 12 ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.html | 493 ++++++------ ggfocus-1.0.1/ggfocus/man/figures/README-example_2-1.png |binary ggfocus-1.0.1/ggfocus/man/figures/README-example_2-2.png |only ggfocus-1.0.1/ggfocus/man/figures/README-example_map-1.png |binary ggfocus-1.0.1/ggfocus/tests |only ggfocus-1.0.1/ggfocus/vignettes/introduction_to_ggfocus.Rmd | 12 24 files changed, 440 insertions(+), 348 deletions(-)
Title: Partially Observed Integrated Functional Depth
Description: Integrated Functional Depth for Partially Observed Functional Data and applications to visualization, outlier detection and classification. It implements the methods proposed in: Elías, A., Jiménez, R., Paganoni, A. M. and Sangalli, L. M., (2023), "Integrated Depth for Partially Observed Functional Data", Journal of Computational and Graphical Statistics, <doi:10.1080/10618600.2022.2070171>. Elías, A., Jiménez, R., & Shang, H. L. (2023), "Depth-based reconstruction method for incomplete functional data", Computational Statistics, <doi:10.1007/s00180-022-01282-9>. Elías, A., Nagy, S. (2024), "Statistical properties of partially observed integrated functional depths", TEST, <doi:10.1007/s11749-024-00954-6>.
Author: Antonio Elias [aut, cre],
Raul Jimenez [ctb],
Anna M. Paganoni [ctb],
Laura M. Sangalli [ctb],
Stanislav Nagy [ctb],
Maximiliam Ofner [ctb]
Maintainer: Antonio Elias <antonioefz91@gmail.com>
Diff between fdaPOIFD versions 2.0.0 dated 2025-06-25 and 2.0.1 dated 2025-09-02
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS.md | 4 + R/POIFD.R | 3 - R/boxplotPOFD.R | 38 ++++++++++++---- R/outliergramPoFD.R | 8 ++- inst/doc/simulation_vig.R | 106 +++++++++++++++++++++++----------------------- man/boxplotPOFD.Rd | 18 ++++++- man/outliergramPOFD.Rd | 4 + 9 files changed, 123 insertions(+), 80 deletions(-)
Title: Citizen Voting Age Population
Description: Works with the Citizen Voting Age Population special tabulation from the US Census Bureau <https://www.census.gov/programs-surveys/decennial-census/about/voting-rights/cvap.html>. Provides tools to download and process raw data. Also provides a downloading interface to processed data. Implements a very basic approach to estimate block level citizen voting age population from block group data.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between cvap versions 0.1.5 dated 2024-03-21 and 0.1.6 dated 2025-09-02
DESCRIPTION | 18 +- LICENSE | 4 MD5 | 64 ++++---- NAMESPACE | 22 +- NEWS.md | 47 +++-- R/cvap-package.R | 20 +- R/data.R | 56 +++---- R/distribute.R | 210 +++++++++++++------------- R/geomander_borrow.R | 58 +++---- R/get.R | 140 ++++++++--------- R/get_raw.R | 54 +++--- R/process.R | 256 ++++++++++++++++---------------- R/url.R | 26 +-- R/utils.R | 144 +++++++++--------- R/vest_crosswalk.R | 48 +++--- README.md | 276 +++++++++++++++++++---------------- inst/extdata/County.csv | 80 +++++----- inst/extdata/Nation.csv | 28 +-- man/cvap_census_url.Rd | 42 ++--- man/cvap_distribute.Rd | 82 +++++----- man/cvap_distribute_censable.Rd | 80 +++++----- man/cvap_get.Rd | 106 ++++++------- man/cvap_get_raw.Rd | 54 +++--- man/cvap_process_dir.Rd | 60 +++---- man/cvap_process_file.Rd | 60 +++---- man/de_block.Rd | 36 ++-- man/de_block_group.Rd | 38 ++-- man/vest_crosswalk.Rd | 50 +++--- tests/testthat.R | 8 - tests/testthat/setup.R | 8 - tests/testthat/test-distribute.R | 10 - tests/testthat/test-get.R | 43 +++-- tests/testthat/test-vest_crosswalk.R | 12 - 33 files changed, 1142 insertions(+), 1098 deletions(-)
Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation modeling from a single
list of structural equations, with new methods for non-linear, latent, and
composite variables, standardized coefficients, query-based prediction and
indirect effects. See <http://jslefche.github.io/piecewiseSEM/> for more.
Author: Jon Lefcheck [aut, cre],
Jarrett Byrnes [aut],
James Grace [aut]
Maintainer: Jon Lefcheck <jslefche@gmail.com>
Diff between piecewiseSEM versions 2.3.0.1 dated 2024-06-11 and 2.3.1 dated 2025-09-02
DESCRIPTION | 12 +++---- MD5 | 60 +++++++++++++++++------------------ NEWS.md | 4 ++ R/AIC_psem.R | 2 - R/LLchisq.R | 2 - R/anova_psem.R | 4 +- R/basisSet.R | 3 + R/cerror.R | 3 + R/coefs.R | 4 +- R/dSep.R | 2 - R/multigroup.R | 2 - R/piecewiseSEM-package.R | 2 - R/psem.R | 3 + R/rsquared.R | 5 ++ R/summary.R | 6 +-- R/zzz.R | 2 - README.md | 4 +- build/vignette.rds |binary inst/doc/piecewiseSEM.html | 4 +- man/AIC_psem.Rd | 2 - man/LLchisq.Rd | 2 - man/anova.psem.Rd | 4 +- man/basisSet.Rd | 2 - man/coefs.Rd | 4 +- man/dSep.Rd | 2 - man/grapes-twiddle-twiddle-grapes.Rd | 2 - man/multigroup.Rd | 2 - man/piecewiseSEM-package.Rd | 2 - man/psem.Rd | 2 - man/rsquared.Rd | 2 - man/summary.psem.Rd | 6 +-- 31 files changed, 83 insertions(+), 73 deletions(-)
Title: Main Package of the EMU Speech Database Management System
Description: Provide the EMU Speech Database Management System (EMU-SDMS) with
database management, data extraction, data preparation and data
visualization facilities. See <https://ips-lmu.github.io/The-EMU-SDMS-Manual/>
for more details.
Author: Markus Jochim [aut, cre] ,
Raphael Winkelmann [aut],
Klaus Jaensch [aut, ctb],
Steve Cassidy [aut, ctb],
Jonathan Harrington [aut, ctb]
Maintainer: Markus Jochim <markusjochim@phonetik.uni-muenchen.de>
Diff between emuR versions 2.5.0 dated 2024-03-15 and 2.5.2 dated 2025-09-02
DESCRIPTION | 17 +++++++++-------- MD5 | 40 ++++++++++++++++++++++------------------ NAMESPACE | 1 + NEWS.md | 19 +++++++++++++++++++ R/emuR-add_signal.R |only R/emuR-convert_BPFCollection.R | 2 +- R/emuR-create_emuRdemoData.R | 22 ++++++++++++++++++++++ R/emuR-export_BPFCollection.R | 2 +- R/emuR-get_trackdata.R | 8 ++++---- R/emuR-query.database.R | 4 ++-- R/emuR-requery.database.R | 4 ++-- R/emuR-server.R | 2 +- README.md | 2 +- inst/scripts |only man/add_signalViaMatlab.Rd |only man/convert_BPFCollection.Rd | 2 +- man/export_BPFCollection.Rd | 2 +- man/get_trackdata.Rd | 6 +++--- man/query.Rd | 4 ++-- man/requery_hier.Rd | 2 +- man/requery_seq.Rd | 2 +- man/serve.Rd | 2 +- 22 files changed, 95 insertions(+), 48 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott [aut, cre]
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9.15 dated 2024-02-03 and 0.9.16 dated 2025-09-02
DESCRIPTION | 28 ++++++++++++---------------- MD5 | 4 ++-- src/boom_r_tools.cpp | 2 +- 3 files changed, 15 insertions(+), 19 deletions(-)
Title: A Data Interface Between 'GAMS' and R
Description: Read, analyze, modify, and write 'GAMS' (General Algebraic
Modeling System) data. The main focus of 'gamstransfer' is the
highly efficient transfer of data with 'GAMS' <https://www.gams.com/>,
while keeping these operations as simple as possible for the user. The
transfer of data usually takes place via an intermediate GDX (GAMS Data
Exchange) file. Additionally, 'gamstransfer' provides utility
functions to get an overview of 'GAMS' data and to check its validity.
Author: Atharv Bhosekar [aut, cre],
GAMS Development Corp. [cph, fnd],
GAMS Software GmbH [cph, fnd]
Maintainer: Atharv Bhosekar <abhosekar@gams.com>
Diff between gamstransfer versions 3.0.6 dated 2025-06-04 and 3.0.7 dated 2025-09-02
DESCRIPTION | 8 LICENSE | 4 MD5 | 108 NAMESPACE | 20 NEWS.md | 70 R/Alias.R | 758 +- R/BaseAlias.R | 286 R/Container.R | 3538 +++++----- R/DomainViolation.R | 144 R/Equation.R | 1108 +-- R/Parameter.R | 674 +- R/RcppExports.R | 38 R/Set.R | 414 - R/SpecialValues.R | 128 R/Super.R | 340 - R/Symbol.R | 4215 ++++++------ R/UniverseAlias.R | 456 - R/Variable.R | 1122 +-- R/gamstransfer-package.R | 12 R/symbolTypes.R | 120 R/utility.R | 62 README.md | 298 man/Alias.Rd | 36 man/Container.Rd | 92 man/DomainViolation.Rd | 66 man/Equation.Rd | 40 man/Parameter.Rd | 40 man/Set.Rd | 38 man/SpecialValues.Rd | 56 man/UniverseAlias.Rd | 32 man/Variable.Rd | 38 man/dot-Symbol.Rd | 24 man/gamstransfer-package.Rd | 58 man/readGDX.Rd | 52 man/writeGDX.Rd | 82 src/gdx/LICENSE | 44 tests/testthat.R | 58 tests/testthat/data.gdx |binary tests/testthat/diffile.gdx |binary tests/testthat/empty.gdx |binary tests/testthat/foo.gdx |binary tests/testthat/foo.gms | 30 tests/testthat/foo.lst | 62 tests/testthat/foo_1.gdx |binary tests/testthat/gt.gdx |binary tests/testthat/out.gdx |binary tests/testthat/partial_equation.gdx |binary tests/testthat/partial_parameter.gdx |binary tests/testthat/partial_scalar.gdx |binary tests/testthat/partial_scalar_equation.gdx |binary tests/testthat/partial_scalar_variable.gdx |binary tests/testthat/partial_set.gdx |binary tests/testthat/partial_variable.gdx |binary tests/testthat/partial_write.gdx |binary tests/testthat/test-read.R | 9573 ++++++++++++++--------------- 55 files changed, 12175 insertions(+), 12169 deletions(-)
Title: Calculation and Visualization of the Impact Effect Size Measure
Description: A non-parametric effect size measure capturing changes in central tendency or shape of data distributions. The package provides the necessary functions to calculate and plot the Impact effect size measure between two groups.
Author: Jorn Lotsch [aut, cre] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.loetsch@em.uni-frankfurt.de>
Diff between ImpactEffectsize versions 0.7 dated 2024-04-14 and 0.8 dated 2025-09-02
DESCRIPTION | 23 +++++-- MD5 | 11 ++- NAMESPACE | 1 R/Impact.R | 153 +++++++++++++++++++++++++++++++++++++++++------------ R/plot2Densities.R | 87 ++++++++++++++++-------------- README.md |only man/Impact.Rd | 47 +++++++++------- 7 files changed, 215 insertions(+), 107 deletions(-)
More information about ImpactEffectsize at CRAN
Permanent link
Title: Updated US State Facts and Figures
Description: Updated versions of the 1970's "US State Facts and Figures"
objects from the 'datasets' package included with R. The new data is
compiled from a number of sources, primarily from United States Census
Bureau or the relevant federal agency.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between usa versions 0.1.2 dated 2024-03-11 and 0.1.3 dated 2025-09-02
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/data.R | 8 ++++---- README.md | 18 +++++++++--------- man/facts.Rd | 8 ++++---- 6 files changed, 32 insertions(+), 28 deletions(-)
Title: Read, Manipulate and Visualise Magnetic Resonance Images
Description: Functions for working with magnetic resonance images. Reading and
writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH);
interactive and non-interactive visualisation; flexible image manipulation;
metadata and sparse image handling.
Author: Jon Clayden [cre, aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between tractor.base versions 3.4.2 dated 2024-02-27 and 3.4.5.1 dated 2025-09-02
DESCRIPTION | 16 +++++++++------- MD5 | 8 ++++---- R/misc.R | 3 ++- build/partial.rdb |binary man/printLabelledValues.Rd | 3 ++- 5 files changed, 17 insertions(+), 13 deletions(-)
Title: Structural Modeling for Multiple Latent Class Variables
Description: Provides comprehensive tools for the implementation of Structural Latent Class Models (SLCM), including
Latent Transition Analysis (LTA; Linda M. Collins and Stephanie T. Lanza, 2009) <doi:10.1002/9780470567333>,
Latent Class Profile Analysis (LCPA; Hwan Chung et al., 2010) <doi:10.1111/j.1467-985x.2010.00674.x>, and
Joint Latent Class Analysis (JLCA; Saebom Jeon et al., 2017) <doi:10.1080/10705511.2017.1340844>, and
any other extended models involving multiple latent class variables.
Author: Youngsun Kim [aut, cre] ,
Hwan Chung [aut]
Maintainer: Youngsun Kim <yskstat@gmail.com>
Diff between slca versions 1.3.2 dated 2025-08-24 and 1.4.0 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/estModel.R | 32 +++++++++++++++++--------------- R/estimate.R | 2 +- R/methods.R | 7 +++---- R/regress.R | 39 +++++++++++++++------------------------ R/slcaControl.R | 5 +++-- man/addhealth.Rd | 2 +- man/examples/addhealth.R | 2 +- man/regress.Rd | 6 +++--- man/slcaControl.Rd | 3 +++ 11 files changed, 60 insertions(+), 64 deletions(-)
Title: Parsing, Computation, and Diagnostics for Greenhouse Gas
Measurements
Description: Parse static-chamber greenhouse gas measurement
files generated by a variety of instruments; compute flux rates using
multi-observation metadata; and generate diagnostic metrics and plots.
Designed to be easy to integrate into reproducible scientific workflows.
Author: Stephanie Wilson [cre] ,
Ben Bond-Lamberty [aut] ,
Genevieve Noyce [ctb] ,
Roberta Bittencourt Peixoto [ctb] ,
Patrick Megonigal [ctb] ,
Smithsonian Institution [cph, fnd]
Maintainer: Stephanie Wilson <sjw22120@gmail.com>
Diff between fluxfinder versions 1.2.0 dated 2025-08-21 and 1.2.1 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NEWS.md | 9 ++++----- 3 files changed, 9 insertions(+), 10 deletions(-)
Title: Common Functionality for the 'dynverse' Packages
Description: Provides common functionality for the 'dynverse' packages.
'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods.
For more information, check out <https://dynverse.org>.
Author: Robrecht Cannoodt [aut, cre] ,
Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynutils versions 1.0.11 dated 2022-10-11 and 1.0.12 dated 2025-09-02
DESCRIPTION | 18 MD5 | 24 NEWS.md | 4 R/mapdf.R | 2 README.md | 9 build/vignette.rds |binary inst/doc/functionality.R | 10 inst/doc/functionality.html | 934 +++++++++++++++++++------------ man/add_class.Rd | 2 man/calculate_distance.Rd | 4 man/dynutils.Rd | 18 man/mapdf.Rd | 16 tests/testthat/test-calculate_distance.R | 4 13 files changed, 659 insertions(+), 386 deletions(-)
Title: Power and Sample Size Calculations for Bayes Factor Analysis
Description: Implements z-test, t-test, and normal moment prior Bayes factors based on summary statistics, along with functionality to perform corresponding power and sample size calculations as described in Pawel and Held (2025) <doi:10.1080/00031305.2025.2467919>.
Author: Samuel Pawel [aut, cre]
Maintainer: Samuel Pawel <samuel.pawel@uzh.ch>
Diff between bfpwr versions 0.1.5 dated 2025-05-15 and 0.1.6 dated 2025-09-02
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/ptbf01.R | 7 ++++--- inst/doc/using-bfpwr.R | 2 +- inst/doc/using-bfpwr.pdf |binary 6 files changed, 19 insertions(+), 14 deletions(-)
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles
of birds and other biological signals in weather radar data. See Dokter et al.
(2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
Author: Anders Henja [aut] ,
Adriaan M. Dokter [aut, cre] ,
Alexander Tedeschi [ctb] ,
Tsung-Yu Lin [ctb] ,
Subranshu Maji [ctb] ,
Daniel Sheldon [ctb] ,
Bart Kranstauber [ctb] ,
Jurriaan H. Spaaks [ctb] ,
Lourens Veen [ctb] ,
Iwan Holleman [ctb] ,
Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <vol2birdr@cornell.edu>
Diff between vol2birdR versions 1.1.1 dated 2025-06-25 and 1.2.0 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 7 +++++++ R/rsl2odim.R | 2 +- R/vol2bird.R | 16 ++++++++++++---- inst/COPYRIGHTS | 22 ---------------------- man/vol2bird.Rd | 16 ++++++++++++---- src/librsl/gzip.c | 15 +++++++++------ src/librsl/wsr88d.c | 2 +- src/librsl/wsr88d_to_radar.c | 9 +++++++-- 10 files changed, 62 insertions(+), 53 deletions(-)
Title: Meta-Analysis Methods Correcting for Publication Bias
Description: Provides meta-analysis methods that correct for
publication bias and outcome reporting bias. Four methods and a visual tool
are currently included in the package. The p-uniform method as described in
van Assen, van Aert, and Wicherts (2015) <doi:10.1037/met0000025>
can be used for estimating the average effect size, testing the null hypothesis
of no effect, and testing for publication bias using only the statistically
significant effect sizes of primary studies. The second method in the package
is the p-uniform* method as described in van Aert and van Assen (2023)
<doi:10.31222/osf.io/zqjr9>. This method is an extension of the p-uniform
method that allows for estimation of the average effect size and the
between-study variance in a meta-analysis, and uses both the statistically
significant and nonsignificant effect sizes. The third method in the package
is the hybrid method as described in van Aert and van Assen (2018)
<doi:10.3758/s13428-017-0967-6>. The hybrid metho [...truncated...]
Author: Robbie C.M. van Aert [aut, cre]
Maintainer: Robbie C.M. van Aert <R.C.M.vanAert@tilburguniversity.edu>
Diff between puniform versions 0.2.7 dated 2023-09-19 and 0.2.8 dated 2025-09-02
DESCRIPTION | 51 +++++++++++++++++++++++------------------- MD5 | 28 +++++++++++------------ NEWS.md | 17 ++++++++++++++ R/escompute.R | 4 +-- R/esest_nsig.R | 14 ++++++++++- R/hy.R | 10 ++------ R/hybrid.R | 66 ++++++++++++++++++++++++++----------------------------- R/puni_star.R | 6 ++--- R/repl.R | 7 ----- R/snapshot.R | 45 ++++++++++++++++++++++++------------- R/zzz.R | 2 - README.md | 19 +++++++++------ man/escompute.Rd | 2 - man/hybrid.Rd | 11 +++++---- man/puni_star.Rd | 4 +-- 15 files changed, 161 insertions(+), 125 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.1 dated 2024-12-17 and 1.0.2 dated 2025-09-02
DESCRIPTION | 24 +- MD5 | 32 +-- NAMESPACE | 13 + R/access_fn.R | 1 R/aux_fn.R | 38 ++++ R/globals.R | 69 ++++++- R/outlier_fn.R | 368 ++++++++++++++++++++++++++++++++++++++++- R/spatial_fn.R | 5 inst/extdata/gecko.records.csv | 88 ++++++++- man/distance.Rd | 1 man/gecko.data.Rd | 20 +- man/gecko.setDir.Rd | 7 man/gecko.worldclim.Rd | 2 man/gecko.worldclim.load.Rd |only man/outliers.detect.Rd | 3 man/outliers.detect.mass.Rd |only man/outliers.visualize.Rd | 1 man/spectre.points.Rd | 1 18 files changed, 599 insertions(+), 74 deletions(-)
Title: Dynamic Models with Regime-Switching
Description: Intensive longitudinal data have become increasingly prevalent in
various scientific disciplines. Many such data sets are noisy, multivariate,
and multi-subject in nature. The change functions may also be continuous,
or continuous but interspersed with periods of discontinuities (i.e.,
showing regime switches). The package 'dynr' (Dynamic Modeling in R) is an
R package that implements a set of computationally efficient algorithms for
handling a broad class of linear and nonlinear discrete- and continuous-time
models with regime-switching properties under the constraint of linear
Gaussian measurement functions. The discrete-time models can generally
take on the form of a state-space or difference equation model. The
continuous-time models are generally expressed as a set of ordinary or
stochastic differential equations. All estimation and computations are
performed in C, but users are provided with the option to specify the
model of interest via a set of simple and easy-to-learn model s [...truncated...]
Author: Lu Ou [aut],
Michael D. Hunter [aut, cre] ,
Sy-Miin Chow [aut] ,
Linying Ji [aut],
Meng Chen [aut],
Hui-Ju Hung [aut],
Jungmin Lee [aut],
Yanling Li [aut],
Jonathan Park [aut],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Benoit [...truncated...]
Maintainer: Michael D. Hunter <mike.dynr@gmail.com>
Diff between dynr versions 0.1.16-105 dated 2023-11-28 and 0.1.16-114 dated 2025-09-02
DESCRIPTION | 13 MD5 | 40 +- R/dynrCook.R | 6 R/dynrData.R | 12 R/dynrModel.R | 10 R/dynrPredict.R | 11 R/dynrVersion.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/InstallationForDevelopers.Rnw | 428 ++++++++++++++--------------- inst/doc/InstallationForDevelopers.pdf |binary inst/doc/InstallationForUsers.Rnw | 296 ++++++++++---------- inst/doc/InstallationForUsers.pdf |binary inst/doc/LinearDiscreteTimeModels.pdf |binary inst/doc/NonlinearContinuousTimeModels.pdf |binary inst/doc/linearSDE.R | 12 man/dynr.cook.Rd | 2 man/dynr.data.Rd | 2 src/nldrmd.c | 2 vignettes/InstallationForDevelopers.Rnw | 428 ++++++++++++++--------------- vignettes/InstallationForUsers.Rnw | 296 ++++++++++---------- 21 files changed, 785 insertions(+), 775 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.1.1 dated 2025-06-19 and 1.2.0 dated 2025-09-02
DESCRIPTION | 9 MD5 | 96 +- NAMESPACE | 4 NEWS.md | 63 + R/datatableInternal.R | 244 +++---- R/documentationHelper.R |only R/formatTable.R | 404 ++++++------ R/fxTable.R | 147 ---- R/gtTable.R | 668 ++++++++++---------- R/helperFunctions.R | 491 ++++++--------- R/plot.R | 1013 +++++++++++++++---------------- R/plottingThemes.R | 194 +++-- R/reactableInternal.R | 188 ++--- R/tableStyles.R | 556 ++++++++++------- R/tidy.R | 132 ++-- R/tinyTable.R |only R/utilities.R | 612 +++++++++--------- R/visOmopResults-package.R | 1 R/visOmopTable.R | 531 +++++++--------- R/visTable.R | 44 - README.md | 15 build/vignette.rds |binary inst/doc/a01_tables.R | 8 inst/doc/a01_tables.Rmd | 927 ++++++++++++++-------------- inst/doc/a01_tables.html | 653 +++++++++---------- inst/doc/a02_plots.R | 23 inst/doc/a02_plots.Rmd | 27 inst/doc/a02_plots.html | 59 + man/barPlot.Rd | 7 man/boxPlot.Rd | 15 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/plotDoc.Rd |only man/scatterPlot.Rd | 9 man/setGlobalPlotOptions.Rd |only man/setGlobalTableOptions.Rd |only man/tableDoc.Rd |only man/themeDarwin.Rd |only man/themeVisOmop.Rd | 2 man/visTable.Rd | 14 tests/testthat/_snaps/formatTable.new.md |only tests/testthat/setup.R |only tests/testthat/test-datatableInternal.R | 62 - tests/testthat/test-formatTable.R | 211 +++--- tests/testthat/test-fxTable.R | 52 - tests/testthat/test-gtTable.R | 668 ++++++++++---------- tests/testthat/test-helperFunctions.R | 357 +++++----- tests/testthat/test-plot.R | 48 + tests/testthat/test-reactableInternal.R | 78 +- tests/testthat/test-tinyTable.R |only tests/testthat/test-visOmopTable.R | 840 +++++++++++++------------ tests/testthat/test-visTable.R | 330 +++++----- vignettes/a01_tables.Rmd | 927 ++++++++++++++-------------- vignettes/a02_plots.Rmd | 27 54 files changed, 5419 insertions(+), 5337 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include regression models
(multilevel, multivariate, bayesian), between case standardised mean difference,
overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u', 'IRD', 'baseline corrected tau',
'CDC'), and randomization tests. Data preparation functions support outlier
detection, handling missing values, scaling, and custom transformations.
An export function helps to generate html, word, and latex tables in a
publication friendly style. A shiny app allows to use scan in a graphical
user interface.
More details can be found in the online book 'Analyzing single-case data with
R and scan', Juergen Wilbert (2025)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scan versions 0.65.1 dated 2025-07-13 and 0.66.0 dated 2025-09-02
scan-0.65.1/scan/R/print.sc_bcsmd.R |only scan-0.65.1/scan/R/print.sc_hplm.R |only scan-0.65.1/scan/inst/shiny |only scan-0.66.0/scan/DESCRIPTION | 29 ++- scan-0.66.0/scan/MD5 | 129 ++++++++--------- scan-0.66.0/scan/NAMESPACE | 4 scan-0.66.0/scan/NEWS.md | 34 ++++ scan-0.66.0/scan/R/as_scdf.R | 23 ++- scan-0.66.0/scan/R/autocorr.R | 4 scan-0.66.0/scan/R/between_smd.R | 181 ++++++++++++++++++------ scan-0.66.0/scan/R/bplm.R | 5 scan-0.66.0/scan/R/cdc.R | 4 scan-0.66.0/scan/R/corrected_tau.R | 4 scan-0.66.0/scan/R/describe.R | 4 scan-0.66.0/scan/R/design.R | 33 +++- scan-0.66.0/scan/R/estimate_design.R | 4 scan-0.66.0/scan/R/export.R | 8 - scan-0.66.0/scan/R/export.sc_hplm.R | 138 ------------------ scan-0.66.0/scan/R/export.scdf_summary.R | 12 - scan-0.66.0/scan/R/fill_missing.R | 4 scan-0.66.0/scan/R/hplm.R | 105 +++++++++---- scan-0.66.0/scan/R/importer-gadget.R |only scan-0.66.0/scan/R/message-system.R | 4 scan-0.66.0/scan/R/mplm.R | 4 scan-0.66.0/scan/R/nap.R | 3 scan-0.66.0/scan/R/outlier.R | 4 scan-0.66.0/scan/R/pand.R | 3 scan-0.66.0/scan/R/pem.R | 3 scan-0.66.0/scan/R/pet.R | 3 scan-0.66.0/scan/R/plm.R | 25 +-- scan-0.66.0/scan/R/pnd.R | 3 scan-0.66.0/scan/R/print-export-bcsmd.R |only scan-0.66.0/scan/R/print-export-bplm.R | 5 scan-0.66.0/scan/R/print-export-hplm.R |only scan-0.66.0/scan/R/print-export-plm.R | 8 - scan-0.66.0/scan/R/print.sc_bctau.R | 5 scan-0.66.0/scan/R/private-utilities.R | 29 +++ scan-0.66.0/scan/R/private_check.R | 27 +++ scan-0.66.0/scan/R/private_options.R | 6 scan-0.66.0/scan/R/rand_test.R | 3 scan-0.66.0/scan/R/rci.R | 3 scan-0.66.0/scan/R/read_scdf.R | 12 - scan-0.66.0/scan/R/rescale.R | 28 +-- scan-0.66.0/scan/R/scan.R | 1 scan-0.66.0/scan/R/scdf.R | 6 scan-0.66.0/scan/R/shinyscan.R | 64 ++++---- scan-0.66.0/scan/R/smd.R | 5 scan-0.66.0/scan/R/tau_u.R | 3 scan-0.66.0/scan/R/transform-helper-functions.R | 36 ++++ scan-0.66.0/scan/R/transform.scdf.R | 38 ++--- scan-0.66.0/scan/R/trend.R | 4 scan-0.66.0/scan/README.md | 19 +- scan-0.66.0/scan/inst/CITATION | 2 scan-0.66.0/scan/inst/rstudio/addins.dcf | 12 + scan-0.66.0/scan/inst/shiny_scan |only scan-0.66.0/scan/man/between_smd.Rd | 47 +++++- scan-0.66.0/scan/man/design.Rd | 4 scan-0.66.0/scan/man/fill_missing.Rd | 4 scan-0.66.0/scan/man/hplm.Rd | 36 ++-- scan-0.66.0/scan/man/import_scdf.Rd |only scan-0.66.0/scan/man/read_scdf.Rd | 6 scan-0.66.0/scan/man/scan-package.Rd | 2 scan-0.66.0/scan/man/shinyscan.Rd | 6 scan-0.66.0/scan/man/transform.scdf.Rd | 58 +++++-- scan-0.66.0/scan/tests/testthat/test-hplm.R | 12 + scan-0.66.0/scan/tests/testthat/test-smd.R |only 66 files changed, 753 insertions(+), 515 deletions(-)
Title: Diversity Indices for Numerical Matrices
Description: Provides methods for calculating diversity indices on numerical
matrices, based on information theory, following Rocchini, Marcantonio
and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini et al.
(2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre],
Martina Iannacito [ctb] ,
Elisa Marchetto [ctb] ,
Elisa Thouverai [ctb] ,
Michele Torresani [ctb] ,
Daniele Da Re [ctb] ,
Clara Tattoni [ctb] ,
Giovanni Bacaro [ctb] ,
Saverio Vicario [aut],
Carlo Ricotta [ctb] ,
Duccio [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>
Diff between rasterdiv versions 0.3.7 dated 2025-09-01 and 0.3.8 dated 2025-09-02
DESCRIPTION | 8 +-- MD5 | 18 ++++---- NEWS.md | 6 ++ inst/doc/rasterdiv_01_Basics.html | 4 - inst/doc/rasterdiv_02_Area_based_Rao.html | 4 - inst/doc/rasterdiv_03_Advanced_multidimension_Rao.html | 4 - inst/doc/rasterdiv_04_Accumulation_Rao.R | 20 ++++++++ inst/doc/rasterdiv_04_Accumulation_Rao.Rmd | 20 ++++++++ inst/doc/rasterdiv_04_Accumulation_Rao.html | 38 ++++++++++++----- vignettes/rasterdiv_04_Accumulation_Rao.Rmd | 20 ++++++++ 10 files changed, 105 insertions(+), 37 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.4.1 dated 2024-07-29 and 1.5.0 dated 2025-09-02
nflreadr-1.4.1/nflreadr/R/load_player_stats.R |only nflreadr-1.4.1/nflreadr/data/dictionary_player_stats_def.rda |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.R |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.Rmd |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.html |only nflreadr-1.4.1/nflreadr/man/dictionary_player_stats_def.Rd |only nflreadr-1.4.1/nflreadr/vignettes/dictionary_player_stats_def.Rmd |only nflreadr-1.5.0/nflreadr/DESCRIPTION | 16 nflreadr-1.5.0/nflreadr/MD5 | 231 nflreadr-1.5.0/nflreadr/NAMESPACE | 1 nflreadr-1.5.0/nflreadr/NEWS.md | 122 nflreadr-1.5.0/nflreadr/R/data.R | 29 nflreadr-1.5.0/nflreadr/R/from_url.R | 76 nflreadr-1.5.0/nflreadr/R/load_combine.R | 9 nflreadr-1.5.0/nflreadr/R/load_contracts.R | 10 nflreadr-1.5.0/nflreadr/R/load_depth_charts.R | 24 nflreadr-1.5.0/nflreadr/R/load_draft_picks.R | 10 nflreadr-1.5.0/nflreadr/R/load_espn_qbr.R | 34 nflreadr-1.5.0/nflreadr/R/load_ffverse.R | 57 nflreadr-1.5.0/nflreadr/R/load_ftn_charting.R | 29 nflreadr-1.5.0/nflreadr/R/load_injuries.R | 23 nflreadr-1.5.0/nflreadr/R/load_nextgen_stats.R | 33 nflreadr-1.5.0/nflreadr/R/load_officials.R | 15 nflreadr-1.5.0/nflreadr/R/load_participation.R | 72 nflreadr-1.5.0/nflreadr/R/load_pbp.R | 32 nflreadr-1.5.0/nflreadr/R/load_pfr_advstats.R | 83 nflreadr-1.5.0/nflreadr/R/load_players.R | 37 nflreadr-1.5.0/nflreadr/R/load_rosters.R | 22 nflreadr-1.5.0/nflreadr/R/load_rosters_weekly.R | 28 nflreadr-1.5.0/nflreadr/R/load_schedules.R | 25 nflreadr-1.5.0/nflreadr/R/load_snap_counts.R | 31 nflreadr-1.5.0/nflreadr/R/load_stats.R |only nflreadr-1.5.0/nflreadr/R/load_teams.R | 14 nflreadr-1.5.0/nflreadr/R/load_trades.R | 17 nflreadr-1.5.0/nflreadr/R/utils.R | 78 nflreadr-1.5.0/nflreadr/R/utils_cache_clear.R | 3 nflreadr-1.5.0/nflreadr/R/utils_cran.R | 10 nflreadr-1.5.0/nflreadr/R/utils_date.R | 40 nflreadr-1.5.0/nflreadr/R/utils_download_nflverse.R | 144 nflreadr-1.5.0/nflreadr/R/utils_gameid.R | 27 nflreadr-1.5.0/nflreadr/R/utils_join_coalesce.R | 36 nflreadr-1.5.0/nflreadr/R/utils_mode.R | 8 nflreadr-1.5.0/nflreadr/R/utils_name_cleaning.R | 160 nflreadr-1.5.0/nflreadr/R/utils_nflverse_data_class.R | 47 nflreadr-1.5.0/nflreadr/R/utils_progressively.R | 9 nflreadr-1.5.0/nflreadr/R/utils_sitrep.R | 241 nflreadr-1.5.0/nflreadr/R/zzz.R | 153 nflreadr-1.5.0/nflreadr/build/vignette.rds |binary nflreadr-1.5.0/nflreadr/data/dictionary_combine.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_contracts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_depth_charts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_draft_picks.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_espn_qbr.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_opportunity.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_playerids.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_rankings.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ftn_charting.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_injuries.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_nextgen_stats.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_participation.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_pbp.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_pfr_passing.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_player_stats.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_players.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_roster_status.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_rosters.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_schedules.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_snap_counts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_team_stats.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_trades.rda |binary nflreadr-1.5.0/nflreadr/data/nflverse_data_timezone.rda |only nflreadr-1.5.0/nflreadr/data/player_name_mapping.rda |binary nflreadr-1.5.0/nflreadr/data/team_abbr_mapping.rda |binary 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| 2 nflreadr-1.5.0/nflreadr/man/dictionary_participation.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_player_stats.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_players.Rd |only nflreadr-1.5.0/nflreadr/man/dictionary_roster_status.Rd |only nflreadr-1.5.0/nflreadr/man/dictionary_rosters.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_team_stats.Rd |only nflreadr-1.5.0/nflreadr/man/get_current_week.Rd | 4 nflreadr-1.5.0/nflreadr/man/load_depth_charts.Rd | 4 nflreadr-1.5.0/nflreadr/man/load_ftn_charting.Rd | 2 nflreadr-1.5.0/nflreadr/man/load_participation.Rd | 14 nflreadr-1.5.0/nflreadr/man/load_player_stats.Rd | 38 nflreadr-1.5.0/nflreadr/man/load_players.Rd | 34 nflreadr-1.5.0/nflreadr/man/load_team_stats.Rd |only nflreadr-1.5.0/nflreadr/man/nflverse_data_timezone.Rd |only nflreadr-1.5.0/nflreadr/tests/testthat/test-ffverse.R | 9 nflreadr-1.5.0/nflreadr/tests/testthat/test-from_url.R | 58 nflreadr-1.5.0/nflreadr/tests/testthat/test-nflverse.R | 138 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_date.R | 8 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_join_coalesce.R | 23 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_mode.R | 12 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_name_cleaning.R | 152 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_sitrep.R | 18 nflreadr-1.5.0/nflreadr/vignettes/dictionary_depth_charts.Rmd | 2 nflreadr-1.5.0/nflreadr/vignettes/dictionary_player_stats.Rmd | 11 nflreadr-1.5.0/nflreadr/vignettes/dictionary_players.Rmd |only nflreadr-1.5.0/nflreadr/vignettes/dictionary_roster_status.Rmd |only nflreadr-1.5.0/nflreadr/vignettes/dictionary_team_stats.Rmd |only 131 files changed, 6937 insertions(+), 18413 deletions(-)
Title: Tools Developed by the Long Term Ecological Research Community
Description: Set of the data science tools created by various members of the Long Term
Ecological Research (LTER) community. These functions were initially written largely
as standalone operations and have later been aggregated into this package.
Author: Nicholas Lyon [aut, cre] ,
Angel Chen [aut] ,
Miguel C. Leon [ctb] ,
National Science Foundation [fnd] ,
University of California, Santa Barbara [cph]
Maintainer: Nicholas Lyon <lyon@nceas.ucsb.edu>
Diff between ltertools versions 2.0.0 dated 2025-03-26 and 2.1.0 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 19 ++++++++++++------- R/standardize.R | 3 ++- tests/testthat/test-site_timeline.R | 2 +- 5 files changed, 23 insertions(+), 17 deletions(-)
Title: Exploring Water Quality Monitoring Data
Description: Functions to assist in the processing and
exploration of data from environmental monitoring programs.
The package name stands for "water quality" and reflects the
original focus on time series data for physical and chemical
properties of water, as well as the biota. Intended for
programs that sample approximately monthly, quarterly or
annually at discrete stations, a feature of many legacy data
sets. Most of the functions should be useful for analysis of
similar-frequency time series regardless of the subject
matter.
Author: Alan Jassby [aut],
James Cloern [ctb],
Jemma Stachelek [ctb, cre]
Maintainer: Jemma Stachelek <jemma.stachelek@gmail.com>
Diff between wql versions 1.0.2 dated 2025-01-23 and 1.0.3 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/eofNum.R | 2 +- inst/doc/wql-package.html | 8 ++++---- man/sfbay.Rd | 3 +-- man/wql-package.Rd | 1 - 7 files changed, 20 insertions(+), 17 deletions(-)
Title: Access Color Names Using a Standardized Nomenclature
Description: A curated set of colors that are called using
a standardized syntax: saturation + hue + lightness. For example,
"brightblue4" and "mutedred2". Functions exists to return individual colors
by name or to build palettes across or within hues. Most functions allow you
to visualize the palettes in addition to returning the desired hex codes.
Author: Jake Riley [aut, cre]
Maintainer: Jake Riley <rjake@sas.upenn.edu>
Diff between simplecolors versions 0.1.3 dated 2025-08-22 and 0.1.4 dated 2025-09-02
DESCRIPTION | 6 +-- MD5 | 22 +++++------ NAMESPACE | 3 + NEWS.md | 3 + R/build_colors.R | 27 +++++++++----- inst/doc/intro.R | 6 +-- inst/doc/intro.Rmd | 12 ++---- inst/doc/intro.html | 75 ++++++++++++++++++--------------------- tests/testthat/test-sc_across.R | 2 - tests/testthat/test-sc_within.R | 2 - vignettes/images/show_colors.png |binary vignettes/intro.Rmd | 12 ++---- 12 files changed, 90 insertions(+), 80 deletions(-)
Title: Recurrent Event Data Analysis
Description: Contains implementations of recurrent event data analysis routines
including (1) survival and recurrent event data simulation from
stochastic process point of view by the thinning method
proposed by Lewis and Shedler (1979) <doi:10.1002/nav.3800260304>
and the inversion method introduced in Cinlar (1975, ISBN:978-0486497976),
(2) the mean cumulative function (MCF) estimation by the
Nelson-Aalen estimator of the cumulative hazard rate function,
(3) two-sample recurrent event responses comparison with the pseudo-score
tests proposed by Lawless and Nadeau (1995) <doi:10.2307/1269617>,
(4) gamma frailty model with spline rate function following
Fu, et al. (2016) <doi:10.1080/10543406.2014.992524>.
Author: Wenjie Wang [aut, cre] ,
Haoda Fu [aut],
Sy Han Chiou [ctb],
Jun Yan [ctb]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between reda versions 0.5.5 dated 2025-06-14 and 0.5.6 dated 2025-09-02
DESCRIPTION | 11 +++---- MD5 | 24 +++++++-------- NAMESPACE | 13 -------- NEWS.md | 9 +++++ R/misc.R | 10 ++++++ R/plot.R | 66 +++++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/CITATION | 2 - inst/doc/reda-Recur.html | 6 +-- inst/doc/reda-intro.html | 32 +++++++++++++------- inst/doc/reda-simulate.html | 6 +-- inst/tinytest/test_mcfDiff.R | 5 +-- inst/tinytest/test_rateReg.R | 14 ++++----- 13 files changed, 131 insertions(+), 67 deletions(-)
Title: CAnopy IMage ANalysis
Description: Tools for preprocessing and processing canopy photographs with
support for raw data reading. Provides methods to address variability in
sky brightness and to mitigate errors from image acquisition in
non-diffuse light. Works with all types of fish-eye lenses, and some
methods also apply to conventional lenses.
Author: Gaston Mauro Diaz [aut, cre]
Maintainer: Gaston Mauro Diaz <gastonmaurodiaz@gmail.com>
Diff between rcaiman versions 1.2.2 dated 2023-11-14 and 2.0.1 dated 2025-09-02
rcaiman-1.2.2/rcaiman/R/apply_thr.R |only rcaiman-1.2.2/rcaiman/R/calc_co.R |only rcaiman-1.2.2/rcaiman/R/cie_sky_model_raster.R |only rcaiman-1.2.2/rcaiman/R/colorfulness.R |only rcaiman-1.2.2/rcaiman/R/enhance_caim.R |only rcaiman-1.2.2/rcaiman/R/extract_rl.R |only rcaiman-1.2.2/rcaiman/R/extract_sky_points_simple.R |only rcaiman-1.2.2/rcaiman/R/extract_sun_coord.R |only rcaiman-1.2.2/rcaiman/R/find_sky_pixels.R |only rcaiman-1.2.2/rcaiman/R/find_sky_pixels_nonnull.R |only rcaiman-1.2.2/rcaiman/R/fit_cie_sky_model.R |only rcaiman-1.2.2/rcaiman/R/fix_reconstructed_sky.R |only rcaiman-1.2.2/rcaiman/R/gbc.R |only rcaiman-1.2.2/rcaiman/R/interpolate_sky_points.R |only rcaiman-1.2.2/rcaiman/R/label_cfa.R |only rcaiman-1.2.2/rcaiman/R/local_fuzzy_thresholding.R |only rcaiman-1.2.2/rcaiman/R/mask_hs.R |only rcaiman-1.2.2/rcaiman/R/mask_sunlit_canopy.R |only rcaiman-1.2.2/rcaiman/R/masking.R |only rcaiman-1.2.2/rcaiman/R/membership_to_color.R |only rcaiman-1.2.2/rcaiman/R/normalize.R |only rcaiman-1.2.2/rcaiman/R/obia.R |only rcaiman-1.2.2/rcaiman/R/ootb_mblt.R |only rcaiman-1.2.2/rcaiman/R/ootb_obia.R |only rcaiman-1.2.2/rcaiman/R/ootb_sky_reconstruction.R |only rcaiman-1.2.2/rcaiman/R/optim_normalize.R |only rcaiman-1.2.2/rcaiman/R/percentage_of_clipped_highlights.R |only rcaiman-1.2.2/rcaiman/R/qtree.R |only rcaiman-1.2.2/rcaiman/R/read_bin.R |only rcaiman-1.2.2/rcaiman/R/read_manual_input.R |only rcaiman-1.2.2/rcaiman/R/read_opt_sky_coef.R |only rcaiman-1.2.2/rcaiman/R/regional_thresholding.R |only rcaiman-1.2.2/rcaiman/R/rings_segmentation.R |only rcaiman-1.2.2/rcaiman/R/row_col_from_zenith_azimuth.R |only rcaiman-1.2.2/rcaiman/R/sectors_segmentation.R |only rcaiman-1.2.2/rcaiman/R/write_sky_points.R |only rcaiman-1.2.2/rcaiman/R/write_sun_coord.R |only rcaiman-1.2.2/rcaiman/inst/REFERENCES.bib.sav |only rcaiman-1.2.2/rcaiman/inst/external/15_CIE_standard_skies.csv |only rcaiman-1.2.2/rcaiman/inst/external/APC_0020.jpg |only rcaiman-1.2.2/rcaiman/inst/external/APC_0581.jpg |only rcaiman-1.2.2/rcaiman/man/apply_thr.Rd |only rcaiman-1.2.2/rcaiman/man/calc_co.Rd |only rcaiman-1.2.2/rcaiman/man/cie_sky_model_raster.Rd |only rcaiman-1.2.2/rcaiman/man/colorfulness.Rd |only rcaiman-1.2.2/rcaiman/man/enhance_caim.Rd |only rcaiman-1.2.2/rcaiman/man/extract_rl.Rd |only rcaiman-1.2.2/rcaiman/man/extract_sky_points_simple.Rd |only rcaiman-1.2.2/rcaiman/man/extract_sun_coord.Rd |only rcaiman-1.2.2/rcaiman/man/find_sky_pixels.Rd |only rcaiman-1.2.2/rcaiman/man/find_sky_pixels_nonnull.Rd |only rcaiman-1.2.2/rcaiman/man/fit_cie_sky_model.Rd |only rcaiman-1.2.2/rcaiman/man/fix_reconstructed_sky.Rd |only rcaiman-1.2.2/rcaiman/man/gbc.Rd |only rcaiman-1.2.2/rcaiman/man/interpolate_sky_points.Rd |only rcaiman-1.2.2/rcaiman/man/local_fuzzy_thresholding.Rd |only rcaiman-1.2.2/rcaiman/man/mask_hs.Rd |only rcaiman-1.2.2/rcaiman/man/mask_sunlit_canopy.Rd |only rcaiman-1.2.2/rcaiman/man/masking.Rd |only rcaiman-1.2.2/rcaiman/man/membership_to_color.Rd |only rcaiman-1.2.2/rcaiman/man/normalize.Rd |only rcaiman-1.2.2/rcaiman/man/obia.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_mblt.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_obia.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_sky_reconstruction.Rd |only rcaiman-1.2.2/rcaiman/man/optim_normalize.Rd |only rcaiman-1.2.2/rcaiman/man/percentage_of_clipped_highlights.Rd |only rcaiman-1.2.2/rcaiman/man/qtree.Rd |only rcaiman-1.2.2/rcaiman/man/read_manual_input.Rd |only rcaiman-1.2.2/rcaiman/man/read_opt_sky_coef.Rd |only rcaiman-1.2.2/rcaiman/man/regional_thresholding.Rd |only rcaiman-1.2.2/rcaiman/man/rings_segmentation.Rd |only rcaiman-1.2.2/rcaiman/man/row_col_from_zenith_azimuth.Rd |only rcaiman-1.2.2/rcaiman/man/sectors_segmentation.Rd |only rcaiman-1.2.2/rcaiman/man/write_bin.Rd |only rcaiman-1.2.2/rcaiman/man/write_sky_points.Rd |only rcaiman-1.2.2/rcaiman/man/write_sun_coord.Rd |only rcaiman-1.2.2/rcaiman/tests/testthat/test-normalize.R |only rcaiman-2.0.1/rcaiman/DESCRIPTION | 35 rcaiman-2.0.1/rcaiman/MD5 | 307 ++++---- rcaiman-2.0.1/rcaiman/NAMESPACE | 174 ++-- rcaiman-2.0.1/rcaiman/NEWS.md | 97 +- rcaiman-2.0.1/rcaiman/R/apply_by_direction.R |only rcaiman-2.0.1/rcaiman/R/azimuth_image.R | 64 - rcaiman-2.0.1/rcaiman/R/binarize_by_region.R |only rcaiman-2.0.1/rcaiman/R/binarize_with_thr.R |only rcaiman-2.0.1/rcaiman/R/calc_diameter.R | 85 +- rcaiman-2.0.1/rcaiman/R/calc_relative_radius.R | 38 - rcaiman-2.0.1/rcaiman/R/calc_spherical_distance.R |only rcaiman-2.0.1/rcaiman/R/calc_zenith_colrow.R | 79 +- rcaiman-2.0.1/rcaiman/R/calibrate_lens.R | 102 +- rcaiman-2.0.1/rcaiman/R/chessboard.R | 26 rcaiman-2.0.1/rcaiman/R/cie_image.R |only rcaiman-2.0.1/rcaiman/R/complementary_gradients.R |only rcaiman-2.0.1/rcaiman/R/compute_canopy_openness.R |only rcaiman-2.0.1/rcaiman/R/conventional_lens_image.R |only rcaiman-2.0.1/rcaiman/R/correct_vignetting.R | 63 + rcaiman-2.0.1/rcaiman/R/crop_caim.R | 40 - rcaiman-2.0.1/rcaiman/R/crosscalibrate_lens.R | 94 +- rcaiman-2.0.1/rcaiman/R/data.R |only rcaiman-2.0.1/rcaiman/R/defuzzify.R | 75 +- rcaiman-2.0.1/rcaiman/R/display_caim.R |only rcaiman-2.0.1/rcaiman/R/estimate_sun_angles.R |only rcaiman-2.0.1/rcaiman/R/expand_noncircular.R | 121 +-- rcaiman-2.0.1/rcaiman/R/extract_dn.R | 114 +-- rcaiman-2.0.1/rcaiman/R/extract_feature.R | 70 - rcaiman-2.0.1/rcaiman/R/extract_radiometry.R | 189 +++-- rcaiman-2.0.1/rcaiman/R/extract_rr.R |only rcaiman-2.0.1/rcaiman/R/extract_sky_points.R | 214 ++--- rcaiman-2.0.1/rcaiman/R/fisheye_to_equidistant.R | 190 ++--- rcaiman-2.0.1/rcaiman/R/fisheye_to_pano.R | 37 rcaiman-2.0.1/rcaiman/R/fit_cie_model.R |only rcaiman-2.0.1/rcaiman/R/fit_coneshaped_model.R | 115 +-- rcaiman-2.0.1/rcaiman/R/fit_trend_surface.R | 192 ++--- rcaiman-2.0.1/rcaiman/R/grow_black.R |only rcaiman-2.0.1/rcaiman/R/hsp_compat.R |only rcaiman-2.0.1/rcaiman/R/interpolate_planar.R |only rcaiman-2.0.1/rcaiman/R/interpolate_spherical.R |only rcaiman-2.0.1/rcaiman/R/invert_gamma_correction.R |only rcaiman-2.0.1/rcaiman/R/lens.R | 129 ++- rcaiman-2.0.1/rcaiman/R/normalize_minmax.R |only rcaiman-2.0.1/rcaiman/R/ootb_bin.R |only rcaiman-2.0.1/rcaiman/R/ootb_sky_above.R |only rcaiman-2.0.1/rcaiman/R/ootb_sky_cie.R |only rcaiman-2.0.1/rcaiman/R/optim_dist_to_black.R |only rcaiman-2.0.1/rcaiman/R/optim_sun_angles.R |only rcaiman-2.0.1/rcaiman/R/paint_with_mask.R |only rcaiman-2.0.1/rcaiman/R/polar_qtree.R | 135 ++- rcaiman-2.0.1/rcaiman/R/rcaiman-package.R | 6 rcaiman-2.0.1/rcaiman/R/read_caim.R | 130 +-- rcaiman-2.0.1/rcaiman/R/read_caim_raw.R | 165 ++-- rcaiman-2.0.1/rcaiman/R/rem_isolated_black_pixels.R |only rcaiman-2.0.1/rcaiman/R/rem_nearby_points.R |only rcaiman-2.0.1/rcaiman/R/rem_outliers.R |only rcaiman-2.0.1/rcaiman/R/ring_segmentation.R |only rcaiman-2.0.1/rcaiman/R/sector_segmentation.R |only rcaiman-2.0.1/rcaiman/R/select_sky_region.R |only rcaiman-2.0.1/rcaiman/R/sky_grid_centers.R |only rcaiman-2.0.1/rcaiman/R/sky_grid_segmentation.R | 120 +-- rcaiman-2.0.1/rcaiman/R/test_lens_coef.R | 32 rcaiman-2.0.1/rcaiman/R/thr_isodata.R | 46 - rcaiman-2.0.1/rcaiman/R/thr_mblt.R | 162 +--- rcaiman-2.0.1/rcaiman/R/thr_twocorner.R |only rcaiman-2.0.1/rcaiman/R/utils.R | 25 rcaiman-2.0.1/rcaiman/R/utils_for_ckecking.R | 373 ++++++++-- rcaiman-2.0.1/rcaiman/R/validate_cie_model.R |only rcaiman-2.0.1/rcaiman/R/write_bin.R | 58 + rcaiman-2.0.1/rcaiman/R/write_caim.R | 34 rcaiman-2.0.1/rcaiman/R/write_sky_cie.R |only rcaiman-2.0.1/rcaiman/R/zenith_azimuth_from_row_col.R | 164 +++- rcaiman-2.0.1/rcaiman/R/zenith_image.R | 38 - rcaiman-2.0.1/rcaiman/build/partial.rdb |binary rcaiman-2.0.1/rcaiman/data |only rcaiman-2.0.1/rcaiman/inst/REFERENCES.bib | 180 ++++ rcaiman-2.0.1/rcaiman/inst/external/APC_0836.jpg |only rcaiman-2.0.1/rcaiman/inst/external/example.tif |binary rcaiman-2.0.1/rcaiman/inst/external/example.txt |only rcaiman-2.0.1/rcaiman/inst/external/example_rr.csv |only rcaiman-2.0.1/rcaiman/inst/external/example_rr_up.csv |only rcaiman-2.0.1/rcaiman/inst/external/example_sky_points.gpkg |only rcaiman-2.0.1/rcaiman/inst/external/example_sun_disk.gpkg |only rcaiman-2.0.1/rcaiman/inst/external/example_val.csv |only rcaiman-2.0.1/rcaiman/inst/external/points_over_perimeter.csv | 21 rcaiman-2.0.1/rcaiman/inst/external/sky_points.csv | 81 +- rcaiman-2.0.1/rcaiman/man/apply_by_direction.Rd |only rcaiman-2.0.1/rcaiman/man/azimuth_image.Rd | 57 - rcaiman-2.0.1/rcaiman/man/binarize_by_region.Rd |only rcaiman-2.0.1/rcaiman/man/binarize_with_thr.Rd |only rcaiman-2.0.1/rcaiman/man/calc_diameter.Rd | 143 +-- rcaiman-2.0.1/rcaiman/man/calc_relative_radius.Rd | 62 - rcaiman-2.0.1/rcaiman/man/calc_spherical_distance.Rd |only rcaiman-2.0.1/rcaiman/man/calc_zenith_colrow.Rd | 143 +-- rcaiman-2.0.1/rcaiman/man/calibrate_lens.Rd | 101 +- rcaiman-2.0.1/rcaiman/man/chessboard.Rd | 32 rcaiman-2.0.1/rcaiman/man/cie_image.Rd |only rcaiman-2.0.1/rcaiman/man/cie_table.Rd |only rcaiman-2.0.1/rcaiman/man/complementary_gradients.Rd |only rcaiman-2.0.1/rcaiman/man/compute_canopy_openness.Rd |only rcaiman-2.0.1/rcaiman/man/conventional_lens_image.Rd |only rcaiman-2.0.1/rcaiman/man/correct_vignetting.Rd | 74 - rcaiman-2.0.1/rcaiman/man/crop_caim.Rd | 28 rcaiman-2.0.1/rcaiman/man/crosscalibrate_lens.Rd | 81 -- rcaiman-2.0.1/rcaiman/man/defuzzify.Rd | 130 +-- rcaiman-2.0.1/rcaiman/man/display_caim.Rd |only rcaiman-2.0.1/rcaiman/man/estimate_sun_angles.Rd |only rcaiman-2.0.1/rcaiman/man/expand_noncircular.Rd | 89 -- rcaiman-2.0.1/rcaiman/man/extract_dn.Rd | 83 -- rcaiman-2.0.1/rcaiman/man/extract_feature.Rd | 68 - rcaiman-2.0.1/rcaiman/man/extract_radiometry.Rd | 341 ++++----- rcaiman-2.0.1/rcaiman/man/extract_rr.Rd |only rcaiman-2.0.1/rcaiman/man/extract_sky_points.Rd | 97 -- rcaiman-2.0.1/rcaiman/man/figures/twocorner_method.png |only rcaiman-2.0.1/rcaiman/man/fisheye_to_equidistant.Rd | 110 +- rcaiman-2.0.1/rcaiman/man/fisheye_to_pano.Rd | 53 - rcaiman-2.0.1/rcaiman/man/fit_cie_model.Rd |only rcaiman-2.0.1/rcaiman/man/fit_coneshaped_model.Rd | 95 +- rcaiman-2.0.1/rcaiman/man/fit_trend_surface.Rd | 100 +- rcaiman-2.0.1/rcaiman/man/grow_black.Rd |only rcaiman-2.0.1/rcaiman/man/hsp_compat.Rd |only rcaiman-2.0.1/rcaiman/man/interpolate_planar.Rd |only rcaiman-2.0.1/rcaiman/man/interpolate_spherical.Rd |only rcaiman-2.0.1/rcaiman/man/invert_gamma_correction.Rd |only rcaiman-2.0.1/rcaiman/man/lens.Rd | 91 +- rcaiman-2.0.1/rcaiman/man/normalize_minmax.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_bin.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_sky_above.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_sky_cie.Rd |only rcaiman-2.0.1/rcaiman/man/optim_dist_to_black.Rd |only rcaiman-2.0.1/rcaiman/man/optim_sun_angles.Rd |only rcaiman-2.0.1/rcaiman/man/paint_with_mask.Rd |only rcaiman-2.0.1/rcaiman/man/polar_qtree.Rd | 82 +- rcaiman-2.0.1/rcaiman/man/rcaiman-package.Rd | 2 rcaiman-2.0.1/rcaiman/man/read_bin.Rd | 54 - rcaiman-2.0.1/rcaiman/man/read_caim.Rd | 119 +-- rcaiman-2.0.1/rcaiman/man/read_caim_raw.Rd | 129 +-- rcaiman-2.0.1/rcaiman/man/rem_isolated_black_pixels.Rd |only rcaiman-2.0.1/rcaiman/man/rem_nearby_points.Rd |only rcaiman-2.0.1/rcaiman/man/rem_outliers.Rd |only rcaiman-2.0.1/rcaiman/man/ring_segmentation.Rd |only rcaiman-2.0.1/rcaiman/man/sector_segmentation.Rd |only rcaiman-2.0.1/rcaiman/man/select_sky_region.Rd |only rcaiman-2.0.1/rcaiman/man/sky_grid_centers.Rd |only rcaiman-2.0.1/rcaiman/man/sky_grid_segmentation.Rd | 86 +- rcaiman-2.0.1/rcaiman/man/test_lens_coef.Rd | 43 - rcaiman-2.0.1/rcaiman/man/thr_isodata.Rd | 33 rcaiman-2.0.1/rcaiman/man/thr_mblt.Rd | 146 --- rcaiman-2.0.1/rcaiman/man/thr_twocorner.Rd |only rcaiman-2.0.1/rcaiman/man/validate_cie_model.Rd |only rcaiman-2.0.1/rcaiman/man/write_caim.Rd | 50 - rcaiman-2.0.1/rcaiman/man/write_sky_cie.Rd |only rcaiman-2.0.1/rcaiman/man/zenith_azimuth_from_row_col.Rd | 65 + rcaiman-2.0.1/rcaiman/man/zenith_image.Rd | 37 rcaiman-2.0.1/rcaiman/tests/testthat/test-normalize_minmax.R |only rcaiman-2.0.1/rcaiman/tools |only 234 files changed, 3785 insertions(+), 3459 deletions(-)
Title: Datasets and Functions to Accompany Analisis De Datos Con R
Description: Datasets and functions to accompany the book 'Analisis de datos con el programa
estadistico R: una introduccion aplicada' by Salas-Eljatib (2021, ISBN: 9789566086109).
The package helps carry out data management, exploratory analyses, and model fitting.
Author: Christian Salas-Eljatib [aut, cre] ,
Campos Nicolas [ctb] ,
Pino Nicolas [ctb] ,
Riquelme Joaquin [ctb]
Maintainer: Christian Salas-Eljatib <cseljatib@gmail.com>
Diff between datana versions 1.1.2 dated 2025-08-18 and 1.1.3 dated 2025-09-02
DESCRIPTION | 6 ++-- MD5 | 16 +++++------ R/descstat.r | 45 ++++++++++++++++++++------------ R/histbxp.r | 70 +++++++++++++++++++++++++------------------------- R/tabtexdescstat.r | 38 +++++++++++++++------------ inst/CITATION | 4 +- man/descstat.Rd | 27 ++++++++++++------- man/histbxp.Rd | 18 +++++++++++- man/tabtexdescstat.Rd | 15 ++++++---- 9 files changed, 142 insertions(+), 97 deletions(-)
Title: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Description: Perform parallel factor analysis (PARAFAC: Hitchcock, 1927)
<doi:10.1002/sapm192761164> on fluorescence excitation-emission
matrices: handle scattering signal and inner filter effect, scale
the dataset, fit the model; perform split-half validation or
jack-knifing. Modified approaches such as Whittaker interpolation,
randomised split-half, and fluorescence and scattering model
estimation are also available. The package has a low dependency
footprint and has been tested on a wide range of R versions.
Author: Ivan Krylov [aut, cre] ,
Timur Labutin [ths] ,
Anastasia Drozdova [rev]
Maintainer: Ivan Krylov <ikrylov@laser.chem.msu.ru>
Diff between albatross versions 0.3-8 dated 2024-05-07 and 0.3-9 dated 2025-09-02
DESCRIPTION | 20 ++++++++++------ MD5 | 34 ++++++++++++++-------------- NAMESPACE | 4 +-- R/Rd.R | 12 +++++----- R/corcondia.R | 5 ++-- R/parafac.R | 46 +++++++++++++++++++++++++++++++++++++-- R/splithalf.R | 2 - build/albatross.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary inst/NEWS.Rd | 21 +++++++++++++++++ man/feemparafac.Rd | 35 ++++++++++++++++++++++++++++- man/figures/feemindex.pdf |binary man/figures/scatter-widths.pdf |binary man/figures/whittaker2points.pdf |binary man/macros/albatross.Rd | 10 ++++---- tests/parafac.R | 46 +++++++++++++++++++++++++++++++++++++++ tests/splithalf.R | 7 +++++ 18 files changed, 199 insertions(+), 43 deletions(-)
Title: Projection Visualization Plots for Dimensionally Reduced Data
Description: Creates visualization plots for 2D projected data including ellipse plots, Voronoi diagram plots, and combined ellipse-Voronoi plots. Designed to visualize class separation in dimensionally reduced data from techniques like principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA) or others. For more details see Lotsch and Ultsch (2024) <doi:10.1016/j.imu.2024.101573>.
Author: Jorn Lotsch [aut, cre]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between VoronoiBiomedPlot versions 0.1.1 dated 2025-06-19 and 0.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 3 ++- R/create_projection_plots.R | 4 ++-- build/partial.rdb |binary 5 files changed, 12 insertions(+), 11 deletions(-)
More information about VoronoiBiomedPlot at CRAN
Permanent link
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the
'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi'
library. 'textshaping' is a low-level utility package mainly for
graphic devices that expands upon the font tool-set provided by the
'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between textshaping versions 1.0.2 dated 2025-09-01 and 1.0.3 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/string_shape.h | 3 +-- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Clinical Stroke Research
Description: A collection of tools for clinical trial data management and
analysis in research and teaching.
The package is mainly collected for personal use, but any use beyond that is encouraged.
This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added.
Version follows months and year. See NEWS/Changelog for release notes.
This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>).
The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>.
The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between stRoke versions 24.10.1 dated 2024-10-25 and 25.9.1 dated 2025-09-02
DESCRIPTION | 12 +-- MD5 | 9 +- NEWS.md | 4 + inst/doc/toolbox.html | 135 +++++++++++++++++++-------------------- tests/spelling.R |only tests/testthat/test-index_plot.R | 31 +++----- 6 files changed, 95 insertions(+), 96 deletions(-)
Title: Create a Package or Research Compendium Structure
Description: Makes easier the creation of R package or research compendium
(i.e. a predefined files/folders structure) so that users can focus on the
code/analysis instead of wasting time organizing files. A full
ready-to-work structure is set up with some additional features: version
control, remote repository creation, CI/CD configuration (check package
integrity under several OS, test code with 'testthat', and build and deploy
website using 'pkgdown'). This package heavily relies on the R packages
'devtools' and 'usethis' and follows recommendations made by Wickham H.
(2015) <ISBN:9781491910597> and Marwick B. et al. (2018)
<doi:10.7287/peerj.preprints.3192v2>.
Author: Nicolas Casajus [aut, cre, cph]
Maintainer: Nicolas Casajus <nicolas.casajus@fondationbiodiversite.fr>
Diff between rcompendium versions 1.3 dated 2023-10-26 and 1.4 dated 2025-09-02
rcompendium-1.3/rcompendium/man/figures/hexsticker.png |only rcompendium-1.4/rcompendium/DESCRIPTION | 14 - rcompendium-1.4/rcompendium/MD5 | 83 +++--- rcompendium-1.4/rcompendium/NAMESPACE | 1 rcompendium-1.4/rcompendium/NEWS.md | 21 + rcompendium-1.4/rcompendium/R/add_compendium.R | 13 - rcompendium-1.4/rcompendium/R/add_dependencies.R | 18 - rcompendium-1.4/rcompendium/R/add_github_actions_citation.R | 126 +++++----- rcompendium-1.4/rcompendium/R/add_github_actions_codemeta.R |only rcompendium-1.4/rcompendium/R/add_renv.R | 2 rcompendium-1.4/rcompendium/R/get_all_functions.R | 3 rcompendium-1.4/rcompendium/R/new_compendium.R | 51 ++-- rcompendium-1.4/rcompendium/R/new_package.R | 46 ++- rcompendium-1.4/rcompendium/R/utils-deps.R | 81 +++--- rcompendium-1.4/rcompendium/R/utils-io.R | 23 + rcompendium-1.4/rcompendium/R/utils-sys.R | 10 rcompendium-1.4/rcompendium/README.md | 12 rcompendium-1.4/rcompendium/build/vignette.rds |binary rcompendium-1.4/rcompendium/inst/CITATION | 4 rcompendium-1.4/rcompendium/inst/doc/rcompendium.R | 84 +++--- rcompendium-1.4/rcompendium/inst/doc/rcompendium.html | 3 rcompendium-1.4/rcompendium/inst/templates/R-CMD-check.yaml | 3 rcompendium-1.4/rcompendium/inst/templates/README-comp.Rmd | 29 +- rcompendium-1.4/rcompendium/inst/templates/document-package.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/pkgdown.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/render-README.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/test-coverage.yaml | 4 rcompendium-1.4/rcompendium/inst/templates/update-citation-cff.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/update-codemeta.yaml |only rcompendium-1.4/rcompendium/man/add_compendium.Rd | 8 rcompendium-1.4/rcompendium/man/add_dependencies.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_check.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_citation.Rd | 4 rcompendium-1.4/rcompendium/man/add_github_actions_codecov.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_codemeta.Rd |only rcompendium-1.4/rcompendium/man/add_github_actions_document.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_pkgdown.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_render.Rd | 1 rcompendium-1.4/rcompendium/man/add_r_depend.Rd | 1 rcompendium-1.4/rcompendium/man/add_to_buildignore.Rd | 1 rcompendium-1.4/rcompendium/man/add_to_gitignore.Rd | 1 rcompendium-1.4/rcompendium/man/figures/logo.png |only rcompendium-1.4/rcompendium/man/new_compendium.Rd | 7 rcompendium-1.4/rcompendium/man/new_package.Rd | 7 rcompendium-1.4/rcompendium/man/rcompendium-package.Rd | 1 45 files changed, 413 insertions(+), 262 deletions(-)
Title: Process and Visualise Concept Mapping Data
Description: Concept maps are versatile tools used across disciplines to enhance understanding,
teaching, brainstorming, and information organization. This package provides functions for
processing and visualizing concept mapping data, involving the sequential use of cluster analysis
(for sorting participants and statements), multidimensional scaling (for positioning statements
in a conceptual space), and visualization techniques, including point cluster maps and
dendrograms. The methodology and its validity are discussed in Kampen, J.K., Hageman, J.A.,
Breuer, M., & Tobi, H. (2025). "The validity of concept mapping: let's call a spade a spade."
Qual Quant. <doi:10.1007/s11135-025-02351-z>.
Author: Jos Hageman [aut, cre],
Jarl Kampen [aut]
Maintainer: Jos Hageman <jos.hageman@wur.nl>
Diff between cmAnalysis versions 1.0.0 dated 2025-03-13 and 1.0.1 dated 2025-09-02
DESCRIPTION | 15 +++++++++++---- MD5 | 7 ++++--- NEWS.md |only R/conceptMapping.R | 6 +++--- man/conceptMapping.Rd | 6 +++--- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Brazilian Population Estimatives
Description: Functions to handle and aggregate population estimates for Brazilian municipalities by sex and age groups.
Author: Raphael Saldanha [aut, cre]
Maintainer: Raphael Saldanha <raphael.saldanha@fiocruz.br>
Diff between brpop versions 0.6.0 dated 2025-02-24 and 0.6.2 dated 2025-09-02
DESCRIPTION | 9 +++++---- MD5 | 31 ++++++++++++++++--------------- NEWS.md | 6 ++++++ R/datasus2024_mun_female_pop.R | 18 +++++++++++++++--- R/datasus2024_mun_male_pop.R | 16 ++++++++++++++-- R/datasus_mun_female_pop.R | 18 +++++++++++++++--- R/datasus_mun_male_pop.R | 16 ++++++++++++++-- R/error_messages.R |only R/ibge_pop.R | 17 +++++++++++++---- R/mun_pop_age.R | 29 ++++++++++++++++++++++------- R/regsaude_pop_age.R | 29 +++++++++++++++++++++++++---- R/uf_pop_age.R | 27 +++++++++++++++++++++------ R/ufrn_mun_female_pop.R | 16 ++++++++++++++-- R/ufrn_mun_male_pop.R | 16 ++++++++++++++-- man/mun_pop_age.Rd | 4 +++- man/regsaude_pop_age.Rd | 4 +++- man/uf_pop_age.Rd | 4 +++- 17 files changed, 203 insertions(+), 57 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.1-3 dated 2025-01-17 and 1.1-4 dated 2025-09-02
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary data/geyser.rda |binary data/mammoexp.rda |binary inst/doc/blood_loss_report.pdf |binary inst/rda/Primary_endpoint_data.rda |binary 8 files changed, 12 insertions(+), 12 deletions(-)
Title: Authentication Helpers for 'Snowflake'
Description: Authentication helpers for 'Snowflake'.
It provides compatibility with authentication approaches supported
by the 'Snowflake Connector for Python' <https://pypi.org/project/snowflake-connector-python>
and the 'Snowflake CLI' <https://pypi.org/project/snowflake-cli>.
Author: Aaron Jacobs [aut],
E. David Aja [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: E. David Aja <david@posit.co>
Diff between snowflakeauth versions 0.1.2 dated 2025-06-19 and 0.2.0 dated 2025-09-02
snowflakeauth-0.1.2/snowflakeauth/tests/testthat/test_rsa_key1.p8 |only snowflakeauth-0.2.0/snowflakeauth/DESCRIPTION | 10 snowflakeauth-0.2.0/snowflakeauth/MD5 | 30 - snowflakeauth-0.2.0/snowflakeauth/NAMESPACE | 1 snowflakeauth-0.2.0/snowflakeauth/NEWS.md | 7 snowflakeauth-0.2.0/snowflakeauth/R/config.R | 129 +++++ snowflakeauth-0.2.0/snowflakeauth/R/credentials.R | 5 snowflakeauth-0.2.0/snowflakeauth/R/keypair.R | 19 snowflakeauth-0.2.0/snowflakeauth/R/snowflakeauth-package.R | 1 snowflakeauth-0.2.0/snowflakeauth/README.md | 4 snowflakeauth-0.2.0/snowflakeauth/man/snowflake_connection.Rd | 6 snowflakeauth-0.2.0/snowflakeauth/tests/testthat/_snaps/config.md | 12 snowflakeauth-0.2.0/snowflakeauth/tests/testthat/_snaps/keypair.md | 32 - snowflakeauth-0.2.0/snowflakeauth/tests/testthat/encrypted_rsa_key.p8 |only snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-config-verbose.R |only snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-config.R | 217 ++++++---- snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-keypair.R | 41 + snowflakeauth-0.2.0/snowflakeauth/tests/testthat/unencrypted_rsa_key.p8 |only 18 files changed, 382 insertions(+), 132 deletions(-)
Title: A Statistical Framework for the Analysis of Japanese Kanji
Characters
Description: Various tools and data sets that support the study of kanji, including their morphology, decomposition and concepts of distance and similarity between them.
Author: Dominic Schuhmacher [aut, cre] ,
Lennart Finke [aut]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between kanjistat versions 0.14.1 dated 2024-06-04 and 0.14.2 dated 2025-09-02
kanjistat-0.14.1/kanjistat/tests/testthat/Rplots.pdf |only kanjistat-0.14.2/kanjistat/DESCRIPTION | 16 - kanjistat-0.14.2/kanjistat/MD5 | 19 - kanjistat-0.14.2/kanjistat/NEWS.md | 6 kanjistat-0.14.2/kanjistat/R/kanjivec.R | 2 kanjistat-0.14.2/kanjistat/README.md | 4 kanjistat-0.14.2/kanjistat/build/partial.rdb |binary kanjistat-0.14.2/kanjistat/build/vignette.rds |binary kanjistat-0.14.2/kanjistat/inst/doc/kanjistat.R | 204 +++++++++---------- kanjistat-0.14.2/kanjistat/inst/doc/kanjistat.html | 135 ------------ kanjistat-0.14.2/kanjistat/man/kanjivec.Rd | 2 11 files changed, 135 insertions(+), 253 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.1 dated 2025-08-29 and 1.4.2 dated 2025-09-02
DESCRIPTION | 6 MD5 | 16 - NEWS.md | 6 R/get_predicted.R | 14 + inst/doc/display.R | 3 inst/doc/display.Rmd | 6 inst/doc/display.html | 491 +++++++++++++++++++++++++++--------------- tests/testthat/test-betareg.R | 1 vignettes/display.Rmd | 6 9 files changed, 362 insertions(+), 187 deletions(-)
Title: Fast Calculation of the Likelihood of a Stochastic Survival
Model
Description: Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood (see Albert, C., Vogel, S. and Ashauer, R. (2016) <doi:10.1371/journal.pcbi.1004978>).
Author: Carlo Albert [aut],
Soeren Vogel [aut],
Oliver Jakoby [aut, cre],
Alexander Singer [aut],
Dirk Nickisch [aut]
Maintainer: Oliver Jakoby <oliver.jakoby@rifcon.de>
Diff between GUTS versions 1.2.5 dated 2023-10-20 and 1.2.6 dated 2025-09-02
DESCRIPTION | 40 ++ MD5 | 18 - build/partial.rdb |binary build/vignette.rds |binary data/diazinon.rda |binary inst/doc/GUTS-proper.R | 96 +++--- inst/doc/GUTS-proper.html | 493 +++++++++++++++++------------------ inst/doc/ringTest.R | 106 +++---- inst/doc/ringTest.html | 637 ++++++++++++++++++++++------------------------ man/GUTS-package.Rd | 56 ++-- 10 files changed, 734 insertions(+), 712 deletions(-)
Title: Automated Data Preparation
Description: Do most of the painful data preparation for a data science project with a minimum amount of code; Take advantages of 'data.table' efficiency and use some algorithmic trick in order to perform data preparation in a time and RAM efficient way.
Author: Emmanuel-Lin Toulemonde [aut, cre]
Maintainer: Emmanuel-Lin Toulemonde <el.toulemonde@protonmail.com>
Diff between dataPreparation versions 1.1.1 dated 2023-07-04 and 1.1.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 8 ++++++++ NEWS.md | 8 ++++++++ R/aggregate.R | 2 +- R/fast_functions.r | 4 ++-- R/generate_from_date.R | 6 +++--- R/generate_from_factor.R | 2 +- R/set_col_as.R | 8 ++++---- man/aggregate_by_key.Rd | 2 +- man/build_date_factor.Rd | 4 ++-- man/build_target_encoding.Rd | 2 +- man/fast_handle_na.Rd | 4 ++-- man/generate_date_diffs.Rd | 2 +- man/set_col_as_character.Rd | 2 +- man/set_col_as_date.Rd | 2 +- man/set_col_as_factor.Rd | 2 +- man/set_col_as_numeric.Rd | 2 +- 18 files changed, 59 insertions(+), 43 deletions(-)
More information about dataPreparation at CRAN
Permanent link
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 5.1.0 dated 2025-07-15 and 5.1.1 dated 2025-09-02
DESCRIPTION | 6 MD5 | 16 NEWS | 7 build/partial.rdb |binary inst/biblioshiny/helpContent.R | 3 inst/biblioshiny/libraries.R | 176 --- inst/biblioshiny/server.R | 70 + inst/biblioshiny/ui.R | 16 inst/biblioshiny/utils.R | 2367 +++++++++++++++++++++++++++++++---------- 9 files changed, 1985 insertions(+), 676 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Colin Millar [aut, cre]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesTAF versions 4.2.0 dated 2023-03-21 and 4.3.0 dated 2025-09-02
icesTAF-4.2.0/icesTAF/R/TAF.R |only icesTAF-4.2.0/icesTAF/R/add.data.script.R |only icesTAF-4.2.0/icesTAF/R/datach.all.packages.R |only icesTAF-4.2.0/icesTAF/R/dir.tree.R |only icesTAF-4.2.0/icesTAF/R/download.analysis.R |only icesTAF-4.2.0/icesTAF/R/draft.data.script.R |only icesTAF-4.2.0/icesTAF/R/install.deps.R |only icesTAF-4.2.0/icesTAF/R/is.installed.R |only icesTAF-4.2.0/icesTAF/R/loadpkg.R |only icesTAF-4.2.0/icesTAF/R/run.analysis.R |only icesTAF-4.2.0/icesTAF/R/taf.colors.R |only icesTAF-4.2.0/icesTAF/R/taf.roxygenise.R |only icesTAF-4.2.0/icesTAF/data |only icesTAF-4.2.0/icesTAF/man/add.data.script.Rd |only icesTAF-4.2.0/icesTAF/man/dir.tree.Rd |only icesTAF-4.2.0/icesTAF/man/download.analysis.Rd |only icesTAF-4.2.0/icesTAF/man/draft.data.script.Rd |only icesTAF-4.2.0/icesTAF/man/install.deps.Rd |only icesTAF-4.2.0/icesTAF/man/run.analysis.Rd |only icesTAF-4.2.0/icesTAF/man/taf-reexports.Rd |only icesTAF-4.2.0/icesTAF/man/taf.colors.Rd |only icesTAF-4.2.0/icesTAF/man/taf.roxygenise.Rd |only icesTAF-4.3.0/icesTAF/DESCRIPTION | 28 icesTAF-4.3.0/icesTAF/MD5 | 59 - icesTAF-4.3.0/icesTAF/NAMESPACE | 229 ---- icesTAF-4.3.0/icesTAF/NEWS.md | 1079 +++++++++++------------ icesTAF-4.3.0/icesTAF/R/artifact.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.SAG.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.adhoc.R |only icesTAF-4.3.0/icesTAF/R/get.artifacts.R |only icesTAF-4.3.0/icesTAF/R/icesTAF-internal.R | 28 icesTAF-4.3.0/icesTAF/R/icesTAF-package.R | 54 - icesTAF-4.3.0/icesTAF/R/read.artifacts.R |only icesTAF-4.3.0/icesTAF/R/taf.skeleton.sa.org.R | 184 +-- icesTAF-4.3.0/icesTAF/R/taf_api.R |only icesTAF-4.3.0/icesTAF/R/taf_get.R |only icesTAF-4.3.0/icesTAF/R/taf_post.R |only icesTAF-4.3.0/icesTAF/R/write.artifact.R |only icesTAF-4.3.0/icesTAF/inst |only icesTAF-4.3.0/icesTAF/man/artifact.Rd |only icesTAF-4.3.0/icesTAF/man/check.artifact.Rd |only icesTAF-4.3.0/icesTAF/man/get.artifacts.Rd |only icesTAF-4.3.0/icesTAF/man/icesTAF-internal.Rd | 45 icesTAF-4.3.0/icesTAF/man/icesTAF-package.Rd | 63 - icesTAF-4.3.0/icesTAF/man/read.artifacts.Rd |only icesTAF-4.3.0/icesTAF/man/taf.skeleton.sa.org.Rd | 68 - icesTAF-4.3.0/icesTAF/man/taf_api.Rd |only icesTAF-4.3.0/icesTAF/man/taf_get.Rd |only icesTAF-4.3.0/icesTAF/man/taf_post.Rd |only icesTAF-4.3.0/icesTAF/man/write.artifacts.Rd |only 51 files changed, 829 insertions(+), 1008 deletions(-)
Title: 'Copernicus Data Space Ecosystem' API Wrapper
Description: Provides interface to the 'Copernicus Data Space Ecosystem' API
<https://dataspace.copernicus.eu/analyse/apis>, mainly for searching the catalog of available
data from Copernicus Sentinel missions and obtaining the images for just the area of interest
based on selected spectral bands. The package uses the 'Sentinel Hub' REST API interface
<https://dataspace.copernicus.eu/analyse/apis/sentinel-hub> that provides access to various
satellite imagery archives. It allows you to access raw satellite data, rendered images,
statistical analysis, and other features.
This package is in no way officially related to or endorsed by Copernicus.
Author: Zivan Karaman [aut, cre, cph]
Maintainer: Zivan Karaman <zivan.karaman@gmail.com>
Diff between CDSE versions 0.2.1 dated 2024-08-31 and 0.3.0 dated 2025-09-02
CDSE-0.2.1/CDSE/README.md |only CDSE-0.3.0/CDSE/DESCRIPTION | 11 - CDSE-0.3.0/CDSE/MD5 | 32 ++-- CDSE-0.3.0/CDSE/NAMESPACE | 3 CDSE-0.3.0/CDSE/NEWS.md | 8 + CDSE-0.3.0/CDSE/R/GetCollections.R | 2 CDSE-0.3.0/CDSE/R/GetImage.R | 13 + CDSE-0.3.0/CDSE/R/GetStatistics.R | 13 + CDSE-0.3.0/CDSE/R/MakeEvalScript.R |only CDSE-0.3.0/CDSE/R/SearchCatalog.R | 13 + CDSE-0.3.0/CDSE/R/UniqueCatalog.R | 3 CDSE-0.3.0/CDSE/R/internals.R | 9 - CDSE-0.3.0/CDSE/inst/doc/BeforeYouStart.R | 38 ++--- CDSE-0.3.0/CDSE/inst/doc/BeforeYouStart.pdf |binary CDSE-0.3.0/CDSE/inst/doc/CDSE.R | 92 ++++++++++++- CDSE-0.3.0/CDSE/inst/doc/CDSE.Rmd | 167 +++++++++++++++++++++--- CDSE-0.3.0/CDSE/inst/doc/CDSE.pdf |binary CDSE-0.3.0/CDSE/inst/scripts/SCL_CLOUDS_STAT.js |only CDSE-0.3.0/CDSE/man/MakeEvalScript.Rd |only 19 files changed, 335 insertions(+), 69 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-07 0.1.1
2025-01-14 0.1.0
Title: Density Surface Modelling of Distance Sampling Data
Description: Density surface modelling of line transect data. A Generalized
Additive Model-based approach is used to calculate spatially-explicit estimates
of animal abundance from distance sampling (also presence/absence and strip
transect) data. Several utility functions are provided for model checking,
plotting and variance estimation.
Author: Laura Marshall [cre],
David L. Miller [aut],
Eric Rexstad [ctb],
Louise Burt [ctb],
Mark V. Bravington [ctb],
Sharon Hedley [ctb],
Megan Ferguson [ctb],
Natalie Kelly [ctb]
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>
Diff between dsm versions 2.3.3 dated 2022-08-20 and 2.3.4 dated 2025-09-02
dsm-2.3.3/dsm/NEWS |only dsm-2.3.4/dsm/DESCRIPTION | 44 + dsm-2.3.4/dsm/MD5 | 170 ++--- dsm-2.3.4/dsm/NAMESPACE | 182 +++--- dsm-2.3.4/dsm/NEWS.md |only dsm-2.3.4/dsm/R/all_df_vars.R | 48 - dsm-2.3.4/dsm/R/check.cols.R | 92 +-- dsm-2.3.4/dsm/R/ddf.model.description.R | 78 +- dsm-2.3.4/dsm/R/dead_functions.R | 126 ++-- dsm-2.3.4/dsm/R/dsm-package.R | 223 +++---- dsm-2.3.4/dsm/R/dsm.R | 548 +++++++++--------- dsm-2.3.4/dsm/R/dsm_cor.R | 361 ++++++------ dsm-2.3.4/dsm/R/dsm_var_gam.R | 307 +++++----- dsm-2.3.4/dsm/R/dsm_var_prop.R | 450 +++++++-------- dsm-2.3.4/dsm/R/dsm_varprop.R | 731 ++++++++++++------------- dsm-2.3.4/dsm/R/dummy_ddf.R | 224 +++---- dsm-2.3.4/dsm/R/generate.ds.uncertainty.R | 250 ++++---- dsm-2.3.4/dsm/R/get_hessian.R | 76 +- dsm-2.3.4/dsm/R/latlong2km.R | 72 +- dsm-2.3.4/dsm/R/make.soapgrid.R | 86 +- dsm-2.3.4/dsm/R/matrixnotposdef.handler.R | 36 - dsm-2.3.4/dsm/R/obs_exp.R | 108 +-- dsm-2.3.4/dsm/R/plot.dsm.R | 38 - dsm-2.3.4/dsm/R/plot.dsm.var.R | 496 ++++++++-------- dsm-2.3.4/dsm/R/plot_pred_by_term.R | 134 ++-- dsm-2.3.4/dsm/R/predict.dsm.R | 176 +++--- dsm-2.3.4/dsm/R/print.dsm.R | 106 +-- dsm-2.3.4/dsm/R/print.dsm.var.R | 30 - dsm-2.3.4/dsm/R/print.dsm_varprop.R | 30 - dsm-2.3.4/dsm/R/print.summary.dsm.var.R | 300 +++++----- dsm-2.3.4/dsm/R/print.summary.dsm_varprop.R | 136 ++-- dsm-2.3.4/dsm/R/rqgam_check.R | 174 ++--- dsm-2.3.4/dsm/R/set_ddf_par.R | 24 dsm-2.3.4/dsm/R/summary.dsm.R | 36 - dsm-2.3.4/dsm/R/summary.dsm.var.R | 464 +++++++-------- dsm-2.3.4/dsm/R/summary.dsm_varprop.R | 116 +-- dsm-2.3.4/dsm/R/trim.var.R | 62 +- dsm-2.3.4/dsm/R/varprop_check.R | 234 ++++---- dsm-2.3.4/dsm/R/vis_concurvity.R | 122 ++-- dsm-2.3.4/dsm/R/zzz.R | 46 - dsm-2.3.4/dsm/README.md | 39 - dsm-2.3.4/dsm/man/block.info.per.su.Rd | 60 +- dsm-2.3.4/dsm/man/check.cols.Rd | 54 - dsm-2.3.4/dsm/man/dsm-data.Rd | 136 ++-- dsm-2.3.4/dsm/man/dsm-package.Rd | 63 +- dsm-2.3.4/dsm/man/dsm.Rd | 400 ++++++------- dsm-2.3.4/dsm/man/dsm.cor.Rd | 95 +-- dsm-2.3.4/dsm/man/dsm.var.gam.Rd | 72 +- dsm-2.3.4/dsm/man/dsm.var.movblk.Rd | 108 +-- dsm-2.3.4/dsm/man/dsm.var.prop.Rd | 72 +- dsm-2.3.4/dsm/man/dsm_cor.Rd | 185 +++--- dsm-2.3.4/dsm/man/dsm_var_gam.Rd | 146 ++-- dsm-2.3.4/dsm/man/dsm_var_movblk.Rd | 194 +++--- dsm-2.3.4/dsm/man/dsm_var_prop.Rd | 220 +++---- dsm-2.3.4/dsm/man/dsm_varprop.Rd | 214 +++---- dsm-2.3.4/dsm/man/dummy_ddf.Rd | 54 - dsm-2.3.4/dsm/man/generate.ds.uncertainty.Rd | 50 - dsm-2.3.4/dsm/man/generate.mb.sample.Rd | 70 +- dsm-2.3.4/dsm/man/latlong2km.Rd | 66 +- dsm-2.3.4/dsm/man/make.soapgrid.Rd | 52 - dsm-2.3.4/dsm/man/mexdolphins.Rd | 66 +- dsm-2.3.4/dsm/man/obs_exp.Rd | 88 +-- dsm-2.3.4/dsm/man/plot.dsm.Rd | 50 - dsm-2.3.4/dsm/man/plot.dsm.var.Rd | 166 ++--- dsm-2.3.4/dsm/man/plot_pred_by_term.Rd | 96 +-- dsm-2.3.4/dsm/man/predict.dsm.Rd | 104 +-- dsm-2.3.4/dsm/man/predict.fake_ddf.Rd | 72 +- dsm-2.3.4/dsm/man/print.dsm.Rd | 48 - dsm-2.3.4/dsm/man/print.dsm.var.Rd | 54 - dsm-2.3.4/dsm/man/print.dsm_varprop.Rd | 48 - dsm-2.3.4/dsm/man/print.summary.dsm.var.Rd | 52 - dsm-2.3.4/dsm/man/print.summary.dsm_varprop.Rd | 52 - dsm-2.3.4/dsm/man/rqgam.check.Rd | 34 - dsm-2.3.4/dsm/man/rqgam_check.Rd | 112 +-- dsm-2.3.4/dsm/man/summary.dsm.Rd | 50 - dsm-2.3.4/dsm/man/summary.dsm.var.Rd | 86 +- dsm-2.3.4/dsm/man/summary.dsm_varprop.Rd | 58 - dsm-2.3.4/dsm/man/trim.var.Rd | 52 - dsm-2.3.4/dsm/man/vis.concurvity.Rd | 32 - dsm-2.3.4/dsm/man/vis_concurvity.Rd | 92 +-- dsm-2.3.4/dsm/tests/testthat.R | 10 dsm-2.3.4/dsm/tests/testthat/test_glm.R | 88 +-- dsm-2.3.4/dsm/tests/testthat/test_input.R | 230 +++---- dsm-2.3.4/dsm/tests/testthat/test_mex.R | 148 ++--- dsm-2.3.4/dsm/tests/testthat/test_movblk.R | 136 ++-- dsm-2.3.4/dsm/tests/testthat/test_predict.R | 106 +-- dsm-2.3.4/dsm/tests/testthat/test_vargam.R | 194 +++--- 87 files changed, 5826 insertions(+), 5784 deletions(-)
Title: Transparent Assessment Framework for Reproducible Research
Description: General framework to organize data, methods, and results used in
reproducible scientific analyses. A TAF analysis consists of four scripts
(data.R, model.R, output.R, report.R) that are run sequentially. Each script
starts by reading files from a previous step and ends with writing out files
for the next step. Convenience functions are provided to version control the
required data and software, run analyses, clean residues from previous runs,
manage files, manipulate tables, and produce figures. With a focus on
stability and reproducible analyses, the TAF package comes with no
dependencies. TAF forms a base layer for the 'icesTAF' package and other
scientific applications.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Iago Mosqueira [aut],
Alexandros Kokkalis [ctb],
Ibrahim Umar [ctb],
Hjalte Parner [ctb]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between TAF versions 4.2.0 dated 2023-03-21 and 4.3.0 dated 2025-09-02
DESCRIPTION | 35 +-- MD5 | 197 +++++++++++--------- NAMESPACE | 17 + NEWS.md | 54 +++++ R/TAF-package.R | 73 ++++--- R/access.vocab.R | 2 R/boot.dir.R | 14 - R/boot.exists.R | 2 R/catage.taf.R | 2 R/catage.wide.R |only R/catage.xtab.R | 1 R/check.software.R |only R/clean.R | 13 - R/clean.boot.R | 5 R/clean.library.R | 6 R/clean.software.R | 8 R/convert.spaces.R | 8 R/cp.R | 10 - R/ddim.R |only R/deps.R | 12 - R/dir.tree.R |only R/dos2unix.R | 24 +- R/download.github.R | 16 - R/draft.data.R | 15 - R/draft.readme.R |only R/draft.software.R | 18 - R/ds.file.R | 4 R/ds.package.R | 17 + R/file.encoding.R | 4 R/get.remote.sha.R | 6 R/git.repo.R |only R/install.deps.R |only R/latin1.to.utf8.R | 6 R/line.endings.R | 6 R/linreg.R |only R/make.R | 70 +++++-- R/make.all.R | 2 R/make.taf.R | 4 R/model.dir.R | 2 R/model.script.R | 2 R/parse.repo.R | 6 R/pdeps.R |only R/process.bibfile.R | 6 R/process.entry.R | 39 ++-- R/read.taf.R | 18 - R/rmdir.R | 6 R/sam2taf.R | 8 R/source.all.R | 2 R/source.dir.R | 2 R/source.taf.R | 2 R/taf.boot.R | 18 + R/taf.boot.path.R | 8 R/taf.example.R |only R/taf.install.R | 6 R/taf.libraries.R |only R/taf.library.R | 6 R/taf.png.R | 6 R/taf.session.R | 3 R/taf.skeleton.R | 73 ++++++- R/taf2html.R | 41 ++-- R/taf2long.R | 2 R/unix2dos.R | 13 + R/utf8.to.latin1.R | 6 R/wide2long.R |only R/write.taf.R | 24 +- R/zoom.R | 12 - build/partial.rdb |binary data/catage.long.rda |binary data/catage.taf.rda |binary data/catage.wide.rda |only data/catage.xtab.rda |binary data/summary.taf.rda |binary data/taf.colors.rda |binary inst |only man/TAF-internal.Rd | 10 - man/TAF-package.Rd | 69 ++++--- man/catage.taf.Rd | 2 man/catage.wide.Rd |only man/check.software.Rd |only man/clean.Rd | 11 - man/clean.boot.Rd | 3 man/convert.spaces.Rd | 2 man/cp.Rd | 2 man/ddim.Rd |only man/deps.Rd | 6 man/dir.tree.Rd |only man/dos2unix.Rd | 16 + man/draft.data.Rd | 2 man/draft.readme.Rd |only man/draft.software.Rd | 2 man/figures |only man/git.repo.Rd |only man/install.deps.Rd |only man/linreg.Rd |only man/make.Rd | 43 +++- man/make.taf.Rd | 2 man/pdeps.Rd |only man/read.taf.Rd | 12 - man/sam2taf.Rd | 8 man/taf.boot.Rd | 4 man/taf.example.Rd |only man/taf.install.Rd | 2 man/taf.libraries.Rd |only man/taf.skeleton.Rd | 40 +++- man/taf2html.Rd | 19 + man/taf2long.Rd | 2 man/wide2long.Rd |only man/write.taf.Rd | 10 - man/zoom.Rd | 10 - tests/Examples/TAF-Ex.Rout.save | 390 ++++++++++++++++++++++++++++++++++++++-- 110 files changed, 1176 insertions(+), 453 deletions(-)
Title: Test of Between-Group Differences in the Onset of Senescence
Description: Implementation of a likelihood ratio test of differential
onset of senescence between two groups. Given two groups with
measures of age and of an individual trait likely to be subjected to
senescence (e.g. body mass), 'OnAge' provides an asymptotic p-value
for the null hypothesis that senescence starts at the same age in
both groups. The package implements the procedure used in
Douhard et al. (2017) <doi:10.1111/oik.04421>.
Author: Laurent Jacob [aut],
Frederic Douhard [aut] ,
Jean-Francois Lemaître [aut],
Jean-Michel Gaillard [aut] ,
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between OnAge versions 1.0.1 dated 2017-10-20 and 1.0.2 dated 2025-09-02
DESCRIPTION | 27 ++++++++++++++++++++------- MD5 | 11 ++++++----- README.md |only build/vignette.rds |binary inst/CITATION | 10 +++++++--- inst/doc/RoeDeerMass-simulation.R | 1 - inst/doc/RoeDeerMass-simulation.pdf |binary 7 files changed, 33 insertions(+), 16 deletions(-)
Title: Distance-Based Common Spatial Patterns
Description: A way to apply Distance-Based Common Spatial Patterns
(DB-CSP) techniques in different fields, both classical Common Spatial
Patterns (CSP) as well as DB-CSP. The method is composed of two
phases: applying the DB-CSP algorithm and performing a classification.
The main idea behind the CSP is to use a linear transform to project
data into low-dimensional subspace with a projection matrix, in such a
way that each row consists of weights for signals. This transformation
maximizes the variance of two-class signal matrices.The dbcsp object
is created to compute the projection vectors. For exploratory and
descriptive purpose, plot and boxplot functions can be used. Functions
train, predict and selectQ are implemented for the classification
step.
Author: Itziar Irigoien [aut],
Concepcion Arenas [aut],
Itsaso Rodriguez-Moreno [cre, aut]
Maintainer: Itsaso Rodriguez-Moreno <itsaso.rodriguez@ehu.eus>
Diff between dbcsp versions 0.0.2.1 dated 2022-06-30 and 0.0.2.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/dbcsp.R | 12 ++++++------ man/dbcsp-class.Rd | 10 +++++----- man/dbcsp-package.Rd | 1 + man/predict.dbcsp.Rd | 2 +- 7 files changed, 31 insertions(+), 22 deletions(-)
Title: Curculionidae INstar IDentification
Description: Method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.
Author: Aurelie Siberchicot [ctb, cre] ,
Adrien Merville [aut],
Marie-Claude Bel-Venner [aut] ,
Samuel Venner [aut]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between CINID versions 1.3-0 dated 2020-05-22 and 1.3-1 dated 2025-09-02
DESCRIPTION | 23 ++++++++++++++++++----- MD5 | 2 +- 2 files changed, 19 insertions(+), 6 deletions(-)
Title: Runs Allelematch Regression Tests
Description: Automates regression testing of package 'allelematch'. Over
2500 tests covers all functions in 'allelematch', reproduces the
examples from the documentation and includes negative tests. The
implementation is based on 'testthat'.
Author: Department of Wildlife, Fish and Environmental Studies at Swedish
University of Agricultural Sciences [cph],
Goeran Spong [cph] ,
Paul Galpern [ctb] ,
Torvald Staxler [aut, cre]
Maintainer: Torvald Staxler <torvald.staxler@telia.com>
Diff between amregtest versions 1.0.3 dated 2024-04-12 and 1.0.5 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- R/amregtest-package.R | 4 ++-- R/art_api.R | 27 +++++++++++++++------------ R/art_data.R | 28 ++++++++++++++-------------- man/amExample1.Rd | 4 ++-- man/amExample2.Rd | 4 ++-- man/amExample3.Rd | 4 ++-- man/amExample4.Rd | 4 ++-- man/amExample5.Rd | 4 ++-- man/amregtest.Rd | 4 ++-- man/artData.Rd | 6 +++--- man/artList.Rd | 4 ++-- man/artRun.Rd | 12 ++++++------ man/artVersion.Rd | 10 ++++++---- man/ggSample.Rd | 2 +- tests/testthat/Rplots.pdf |binary 17 files changed, 81 insertions(+), 76 deletions(-)
Title: Generating Multi-Omics Datasets for Testing and Benchmarking
Description: Provides tools to simulate multi-omics datasets with predefined signal structures. The generated data can be used for testing, validating, and benchmarking integrative analysis methods such as factor models and clustering approaches. This version includes enhanced signal customization, visualization tools (scatter, histogram, 3D), MOFA-based analysis pipelines, PowerPoint export, and statistical profiling of datasets. Designed for both method development and teaching, SUMO supports real and synthetic data pipelines with interpretable outputs. Tini, Giulia, et al (2019) <doi:10.1093/bib/bbx167>.
Author: Bernard Isekah Osang'ir [aut, cre] ,
Ziv Shkedy [ctb],
Surya Gupta [ctb],
Juergen Claesen [ctb]
Maintainer: Bernard Isekah Osang'ir <Bernard.Osangir@sckcen.be>
Diff between SUMO versions 1.2.0 dated 2025-05-29 and 1.2.1 dated 2025-09-02
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 70 ++------- R/demo_multiomics_analysis.R | 16 ++ R/feature_selection_one.R | 206 ++++++++++++++--------------- R/plot_simData.R | 190 ++++++++++++++------------- R/simulateMultiOmics.R | 302 +++++++++++++++++-------------------------- man/simulateMultiOmics.Rd | 97 ++++++++----- 8 files changed, 428 insertions(+), 473 deletions(-)
Title: Regression, Inference, and General Data Analysis Tools in R
Description: A set of tools to streamline data analysis. Learning both R and introductory statistics at the same time can be challenging, and so we created 'rigr' to facilitate common data analysis tasks and enable learners to focus on statistical concepts. We provide easy-to-use interfaces for descriptive statistics, one- and two-sample inference, and regression analyses. 'rigr' output includes key information while omitting unnecessary details that can be confusing to beginners. Heteroscedasticity-robust ("sandwich") standard errors are returned by default, and multiple partial F-tests and tests for contrasts are easy to specify. A single regression function can fit both linear and generalized linear models, allowing students to more easily make connections between different classes of models.
Author: Amy D Willis [aut, cre] ,
Taylor Okonek [aut],
Charles J Wolock [aut],
Brian D Williamson [aut],
Scott S Emerson [aut],
Andrew J Spieker [aut],
Yiqun T Chen [aut],
Travis Y Hee Wai [ctb],
James P Hughes [ctb],
R Core Team [ctb],
Akhil S Bhel [ctb],
T [...truncated...]
Maintainer: Amy D Willis <adwillis@uw.edu>
This is a re-admission after prior archival of version 1.0.7 dated 2025-04-18
Diff between rigr versions 1.0.7 dated 2025-04-18 and 1.0.8 dated 2025-09-02
DESCRIPTION | 9 ++-- MD5 | 58 ++++++++++++++--------------- R/anova.R | 13 +++--- R/data.R | 20 ++++------ R/dummy.R | 1 R/lincom.R | 3 + R/proptest.R | 20 +++++++--- R/proptesti.R | 42 +++++++++++++++------ R/ttest.R | 2 + R/ttesti.R | 2 + R/wilcoxon.R | 2 + build/vignette.rds |binary inst/doc/descrip_intro.html | 8 ++-- inst/doc/one_and_two_sample_inference.html | 6 +-- inst/doc/regress_intro.html | 35 ++++++++--------- man/anova.uRegress.Rd | 12 +++--- man/dummy.Rd | 2 - man/fev.Rd | 5 +- man/lincom.Rd | 3 + man/mri.Rd | 5 +- man/proptest.Rd | 2 + man/proptesti.Rd | 2 + man/psa.Rd | 5 +- man/salary.Rd | 5 +- man/ttest.Rd | 2 + man/ttesti.Rd | 2 + man/wilcoxon.Rd | 2 + tests/testthat/test_proptest.R | 21 +++++++--- tests/testthat/test_proptesti.R | 28 +++++++++----- tests/testthat/test_regress.R | 2 - 30 files changed, 188 insertions(+), 131 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.4.0 dated 2025-04-10 and 1.5.0 dated 2025-09-02
DESCRIPTION | 23 +- LICENSE | 2 MD5 | 60 +++-- NAMESPACE | 2 NEWS.md | 5 R/aaa.R | 25 +- R/agg_dev.R | 429 ++++++++++++++++++++++++++++++++++------ README.md | 2 configure | 12 - man/agg_webp.Rd |only man/agg_webp_anim.Rd |only man/ragg-package.Rd | 2 src/AggDeviceWebP.h |only src/AggDeviceWebPAnim.h |only src/Makevars.win | 4 src/agg/include/agg_dda_line.h | 2 src/init.cpp | 2 src/ragg.h | 5 src/text_renderer.h | 3 src/webp_anim_dev.cpp |only src/webp_dev.cpp |only tests/testthat/test-circle.R | 19 - tests/testthat/test-jpeg.R | 4 tests/testthat/test-line.R | 16 - tests/testthat/test-path.R | 23 +- tests/testthat/test-png.R | 8 tests/testthat/test-polygon.R | 27 +- tests/testthat/test-polyline.R | 25 +- tests/testthat/test-ppm.R | 4 tests/testthat/test-raster.R | 16 + tests/testthat/test-rect.R | 19 - tests/testthat/test-tiff.R | 1 tests/testthat/test-webp-anim.R |only tests/testthat/test-webp.R |only tools/winlibs.R | 8 35 files changed, 562 insertions(+), 186 deletions(-)
Title: Pycnophylactic Interpolation
Description: Given a SpatialPolygonsDataFrame and a set of populations for each polygon,
compute a population density estimate based on Tobler's pycnophylactic interpolation
algorithm. The result is a SpatialGridDataFrame.
Methods are described in Tobler Waldo R. (1979) <doi:10.1080/01621459.1979.10481647>.
Author: Chris Brunsdon [aut],
Francesca Bitonti [cre]
Maintainer: Francesca Bitonti <francesca.bitonti@unict.it>
Diff between pycno versions 1.4 dated 2023-09-28 and 1.4.1 dated 2025-09-02
DESCRIPTION | 15 ++++++++++----- MD5 | 8 ++++---- man/predictpycno.Rd | 6 +++--- man/pycno-package.Rd | 4 ++-- man/pycno.Rd | 8 ++++---- 5 files changed, 23 insertions(+), 18 deletions(-)
Title: Missing Data Imputation and Model Checking
Description: The mi package provides functions for data manipulation, imputing missing values in an approximate Bayesian framework, diagnostics of the models used to generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.
Author: Andrew Gelman [ctb],
Jennifer Hill [ctb],
Yu-Sung Su [aut],
Masanao Yajima [ctb],
Maria Pittau [ctb],
Ben Goodrich [cre, aut],
Yajuan Si [ctb],
Jon Kropko [aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between mi versions 1.1 dated 2022-06-06 and 1.2 dated 2025-09-02
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/mi_vignette.R | 16 ++++++++-------- inst/doc/mi_vignette.pdf |binary man/02missing_data.frame.Rd | 2 +- man/get_parameters.Rd | 2 +- man/mi2stata.Rd | 4 ++-- man/nlsyV.Rd | 2 +- man/rdata.frame.Rd | 19 ++++++++----------- 11 files changed, 36 insertions(+), 39 deletions(-)
Title: Highly Adaptive Lasso Conditional Density Estimation
Description: An algorithm for flexible conditional density estimation based on
application of pooled hazard regression to an artificial repeated measures
dataset constructed by discretizing the support of the outcome variable. To
facilitate flexible estimation of the conditional density, the highly
adaptive lasso, a non-parametric regression function shown to estimate
cadlag (RCLL) functions at a suitably fast convergence rate, is used. The
use of pooled hazards regression for conditional density estimation as
implemented here was first described for by Díaz and van der Laan (2011)
<doi:10.2202/1557-4679.1356>. Building on the conditional density estimation
utilities, non-parametric inverse probability weighted (IPW) estimators of
the causal effects of additive modified treatment policies are implemented,
using conditional density estimation to estimate the generalized propensity
score. Non-parametric IPW estimators based on this can be coupled with
undersmoothing of the generalized propensit [...truncated...]
Author: Nima Hejazi [aut, cre, cph] ,
David Benkeser [aut] ,
Mark van der Laan [aut, ths] ,
Rachael Phillips [ctb]
Maintainer: Nima Hejazi <nh@nimahejazi.org>
Diff between haldensify versions 0.2.3 dated 2022-02-09 and 0.2.8 dated 2025-09-02
DESCRIPTION | 51 +- LICENSE | 2 MD5 | 74 +-- NAMESPACE | 11 NEWS.md | 49 ++ R/confint.R | 38 - R/haldensify.R | 13 R/ipw_shift.R | 199 ++++---- R/plots.R | 2 R/predict.R | 3 R/selector_dcar.R | 72 ++- R/selector_gcv.R | 37 - R/selector_plateau.R | 322 +++++-------- R/utils.R | 75 +-- README.md | 186 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 23 inst/REFERENCES.bib | 381 +++++++++++++++- inst/doc/intro_haldensify.R | 90 ++- inst/doc/intro_haldensify.Rmd | 283 +++++++++--- inst/doc/intro_haldensify.html | 760 ++++++++++++++++++++++++--------- man/confint.ipw_haldensify.Rd | 20 man/dcar_selector.Rd | 4 man/est_dcar.Rd |only man/figures |only man/fit_haldensify.Rd | 5 man/format_long_hazards.Rd | 13 man/haldensify.Rd | 2 man/ipw_shift.Rd | 66 +- man/plateau_selector.Rd | 35 - man/plot.haldensify.Rd | 2 man/predict.haldensify.Rd | 2 man/print.haldensify.Rd | 4 man/print.ipw_haldensify.Rd | 5 tests/testthat/test-density_standard.R | 20 tests/testthat/test-ipw_est.R | 15 tests/testthat/test-ratio_covar.R | 1 vignettes/intro_haldensify.Rmd | 283 +++++++++--- 39 files changed, 2137 insertions(+), 1011 deletions(-)
Title: Generalized Application of Co-Occurrence Matrices and Haralick
Texture
Description: Generalizes application of gray-level co-occurrence matrix
(GLCM) metrics to objects outside of images. The current focus is to
apply GLCM metrics to the study of biological networks and fitness
landscapes that are used in studying evolutionary medicine and
biology, particularly the evolution of cancer resistance. The package was
developed as part of the author's publication in Physics in Medicine and Biology
Barker-Clarke et al. (2023) <doi:10.1088/1361-6560/ace305>.
A general reference to learn more about mathematical oncology can be found at
Rockne et al. (2019) <doi:10.1088/1478-3975/ab1a09>.
Author: Rowan Barker-Clarke [aut, cre] ,
Raoul Wadhwa [aut] ,
Davis Weaver [aut],
Jacob Scott [aut]
Maintainer: Rowan Barker-Clarke <rowanbarkerclarke@gmail.com>
Diff between gtexture versions 1.0.0 dated 2024-04-08 and 1.0.1 dated 2025-09-02
DESCRIPTION | 22 +++++++++++----------- LICENSE | 4 ++-- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ build/partial.rdb |binary 5 files changed, 25 insertions(+), 17 deletions(-)
Title: Color Palettes from Crayon Boxes
Description: Provides color palettes based on crayon colors since the early 1900s.
Colors are based on various crayon colors, sets, and promotional palettes, most of
which can be found at <https://en.wikipedia.org/wiki/List_of_Crayola_crayon_colors>. All
palettes are discrete palettes and are not necessarily color-blind friendly.
Provides scales for 'ggplot2' for discrete coloring.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between crayons versions 0.0.3 dated 2024-03-21 and 0.0.4 dated 2025-09-02
DESCRIPTION | 17 ++--- LICENSE | 4 - MD5 | 16 ++--- NAMESPACE | 20 +++--- NEWS.md | 4 + R/scales.R | 108 +++++++++++++++++----------------- README.md | 122 +++++++++++++++++++------------------- man/crayons.Rd | 160 +++++++++++++++++++++++++-------------------------- man/scale_crayons.Rd | 94 ++++++++++++++--------------- 9 files changed, 275 insertions(+), 270 deletions(-)
Title: Access the Congress.gov API
Description: Download and read data on United States congressional proceedings.
Data is read from the Library of Congress's Congress.gov Application Programming
Interface (<https://github.com/LibraryOfCongress/api.congress.gov/>). Functions
exist for all version 3 endpoints, including for bills, amendments, congresses,
summaries, members, reports, communications, nominations, and treaties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between congress versions 0.0.3 dated 2024-01-09 and 0.1.0 dated 2025-09-02
congress-0.0.3/congress/tests/testthat/t/member/v3/member-f60c0f.json |only congress-0.0.3/congress/tests/testthat/t/member1/v3/member/l000174/sponsored-legislation-f60c0f.json |only congress-0.0.3/congress/tests/testthat/t/member2/v3/member/l000174-f60c0f.json |only congress-0.1.0/congress/DESCRIPTION | 23 congress-0.1.0/congress/MD5 | 174 ++++--- congress-0.1.0/congress/NAMESPACE | 4 congress-0.1.0/congress/NEWS.md | 20 congress-0.1.0/congress/R/amendment.R | 248 +++++----- congress-0.1.0/congress/R/api_url.R | 1 congress-0.1.0/congress/R/bill.R | 49 + congress-0.1.0/congress/R/bound_record.R | 167 +++--- congress-0.1.0/congress/R/check.R | 28 - congress-0.1.0/congress/R/committee.R | 57 +- congress-0.1.0/congress/R/committee_meeting.R | 26 - congress-0.1.0/congress/R/committee_print.R | 223 ++++---- congress-0.1.0/congress/R/committee_report.R | 7 congress-0.1.0/congress/R/congress-package.R | 1 congress-0.1.0/congress/R/congress.R | 23 congress-0.1.0/congress/R/crs_report.R |only congress-0.1.0/congress/R/daily_record.R | 216 ++++---- congress-0.1.0/congress/R/hearing.R | 197 ++++--- congress-0.1.0/congress/R/helpers.R | 248 +++++----- congress-0.1.0/congress/R/house_communication.R | 26 - congress-0.1.0/congress/R/house_requirement.R | 200 ++++---- congress-0.1.0/congress/R/house_vote.R |only congress-0.1.0/congress/R/law.R |only congress-0.1.0/congress/R/member.R | 65 ++ congress-0.1.0/congress/R/nomination.R | 225 ++++----- congress-0.1.0/congress/R/record.R | 157 +++--- congress-0.1.0/congress/R/request_next.R | 3 congress-0.1.0/congress/R/senate_communication.R | 26 - congress-0.1.0/congress/R/summaries.R | 174 +++---- congress-0.1.0/congress/R/treaty.R | 241 ++++----- congress-0.1.0/congress/README.md | 121 ++-- congress-0.1.0/congress/build |only congress-0.1.0/congress/inst/WORDLIST | 7 congress-0.1.0/congress/inst/doc |only congress-0.1.0/congress/man/cong_amendment.Rd | 4 congress-0.1.0/congress/man/cong_bill.Rd | 4 congress-0.1.0/congress/man/cong_bound_record.Rd | 2 congress-0.1.0/congress/man/cong_committee.Rd | 4 congress-0.1.0/congress/man/cong_committee_meeting.Rd | 2 congress-0.1.0/congress/man/cong_committee_print.Rd | 2 congress-0.1.0/congress/man/cong_committee_report.Rd | 2 congress-0.1.0/congress/man/cong_congress.Rd | 6 congress-0.1.0/congress/man/cong_crs_report.Rd |only congress-0.1.0/congress/man/cong_daily_record.Rd | 2 congress-0.1.0/congress/man/cong_hearing.Rd | 2 congress-0.1.0/congress/man/cong_house_communication.Rd | 2 congress-0.1.0/congress/man/cong_house_requirement.Rd | 2 congress-0.1.0/congress/man/cong_house_vote.Rd |only congress-0.1.0/congress/man/cong_law.Rd |only congress-0.1.0/congress/man/cong_member.Rd | 34 + congress-0.1.0/congress/man/cong_nomination.Rd | 3 congress-0.1.0/congress/man/cong_record.Rd | 2 congress-0.1.0/congress/man/cong_request_next.Rd | 2 congress-0.1.0/congress/man/cong_senate_communication.Rd | 2 congress-0.1.0/congress/man/cong_summaries.Rd | 2 congress-0.1.0/congress/man/cong_treaty.Rd | 3 congress-0.1.0/congress/tests/spelling.R | 9 congress-0.1.0/congress/tests/testthat.R | 24 congress-0.1.0/congress/tests/testthat/t/amend3 |only congress-0.1.0/congress/tests/testthat/t/bill5 |only congress-0.1.0/congress/tests/testthat/t/bill6 |only congress-0.1.0/congress/tests/testthat/t/crsreport |only congress-0.1.0/congress/tests/testthat/t/crsreport2 |only congress-0.1.0/congress/tests/testthat/t/housevote |only congress-0.1.0/congress/tests/testthat/t/housevote2 |only congress-0.1.0/congress/tests/testthat/t/housevote3 |only congress-0.1.0/congress/tests/testthat/t/law |only congress-0.1.0/congress/tests/testthat/t/law2 |only congress-0.1.0/congress/tests/testthat/t/law3 |only congress-0.1.0/congress/tests/testthat/t/member/v3/member-adb521.json |only congress-0.1.0/congress/tests/testthat/t/member1/v3/member/l000174/sponsored-legislation-adb521.json |only congress-0.1.0/congress/tests/testthat/t/member2/v3/member/l000174-adb521.json |only congress-0.1.0/congress/tests/testthat/t/member3 |only congress-0.1.0/congress/tests/testthat/t/member4 |only congress-0.1.0/congress/tests/testthat/t/member5 |only congress-0.1.0/congress/tests/testthat/t/member6 |only congress-0.1.0/congress/tests/testthat/t/member7 |only congress-0.1.0/congress/tests/testthat/test-amendment.R | 21 congress-0.1.0/congress/tests/testthat/test-bill.R | 32 - congress-0.1.0/congress/tests/testthat/test-bound_record.R | 4 congress-0.1.0/congress/tests/testthat/test-committee.R | 38 - congress-0.1.0/congress/tests/testthat/test-committee_meeting.R | 8 congress-0.1.0/congress/tests/testthat/test-committee_print.R | 14 congress-0.1.0/congress/tests/testthat/test-committee_report.R | 12 congress-0.1.0/congress/tests/testthat/test-congress.R | 10 congress-0.1.0/congress/tests/testthat/test-congress_key.R | 6 congress-0.1.0/congress/tests/testthat/test-crs_report.R |only congress-0.1.0/congress/tests/testthat/test-daily_record.R | 12 congress-0.1.0/congress/tests/testthat/test-hearing.R | 8 congress-0.1.0/congress/tests/testthat/test-house_communication.R | 10 congress-0.1.0/congress/tests/testthat/test-house_requirement.R | 14 congress-0.1.0/congress/tests/testthat/test-house_vote.R |only congress-0.1.0/congress/tests/testthat/test-law.R |only congress-0.1.0/congress/tests/testthat/test-member.R | 49 + congress-0.1.0/congress/tests/testthat/test-nomination.R | 14 congress-0.1.0/congress/tests/testthat/test-record.R | 4 congress-0.1.0/congress/tests/testthat/test-request_next.R | 10 congress-0.1.0/congress/tests/testthat/test-senate_communication.R | 10 congress-0.1.0/congress/tests/testthat/test-summaries.R | 10 congress-0.1.0/congress/tests/testthat/test-treaty.R | 14 congress-0.1.0/congress/vignettes |only 104 files changed, 1841 insertions(+), 1531 deletions(-)
Title: Collection of Common Astronomical Conversion Routines and
Functions
Description: Contains a number of common astronomy utility functions for cosmology and angular coordinates.
Author: Aaron Robotham [aut, cre]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between celestial versions 1.4.6 dated 2018-11-29 and 1.5.8 dated 2025-09-02
celestial-1.4.6/celestial/NEWS |only celestial-1.5.8/celestial/DESCRIPTION | 22 - celestial-1.5.8/celestial/MD5 | 51 +- celestial-1.5.8/celestial/NAMESPACE | 7 celestial-1.5.8/celestial/R/RcppExports.R |only celestial-1.5.8/celestial/R/coordmatch.R | 439 ++++++++++++++++----- celestial-1.5.8/celestial/R/cosdist.R | 52 +- celestial-1.5.8/celestial/R/cosmap.R | 12 celestial-1.5.8/celestial/R/cosorb.R | 20 celestial-1.5.8/celestial/R/deg2dms.R | 11 celestial-1.5.8/celestial/R/deg2hms.R | 6 celestial-1.5.8/celestial/R/dms2deg.R | 9 celestial-1.5.8/celestial/R/skyproj.R | 63 +++ celestial-1.5.8/celestial/R/sph2car.R | 41 + celestial-1.5.8/celestial/man/celestial-package.Rd | 5 celestial-1.5.8/celestial/man/coordmatch.Rd | 118 ++++- celestial-1.5.8/celestial/man/cosNFW.Rd | 6 celestial-1.5.8/celestial/man/cosdist.Rd | 12 celestial-1.5.8/celestial/man/cosgrow.Rd | 8 celestial-1.5.8/celestial/man/coshalo.Rd | 6 celestial-1.5.8/celestial/man/cosmap.Rd | 16 celestial-1.5.8/celestial/man/cosorb.Rd | 35 + celestial-1.5.8/celestial/man/cosref.Rd | 2 celestial-1.5.8/celestial/man/cosvol.Rd | 8 celestial-1.5.8/celestial/man/dms2deg.Rd | 2 celestial-1.5.8/celestial/man/eq2gal.Rd |only celestial-1.5.8/celestial/man/skyproj.Rd | 8 celestial-1.5.8/celestial/src |only 28 files changed, 723 insertions(+), 236 deletions(-)
Title: Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap data in wildlife studies. The package provides a workflow for storing and sorting camera trap photos (and videos), tabulates records of species and individuals, and creates detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it can visualise species activity data and provides simple mapping functions with GIS export.
Author: Juergen Niedballa [aut, cre] ,
Alexandre Courtiol [aut] ,
Rahel Sollmann [aut] ,
John Mathai [ctb],
Seth Timothy Wong [ctb] ,
An The Truong Nguyen [ctb] ,
Azlan bin Mohamed [ctb] ,
Andrew Tilker [ctb] ,
Roshan Guharajan [ctb] ,
Ioannis Alexiou [ctb] [...truncated...]
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between camtrapR versions 2.3.0 dated 2024-02-26 and 2.3.1 dated 2025-09-02
DESCRIPTION | 38 +++-- MD5 | 24 +-- R/checkSpeciesNames.R | 4 R/plot.R | 4 R/predict.R | 2 build/vignette.rds |binary man/addToPath.Rd | 88 ++++++------- man/checkSpeciesNames.Rd | 4 man/filterRecordTable.Rd | 238 +++++++++++++++++------------------ man/plot_coef-commOccu-method.Rd | 2 man/plot_effects-commOccu-method.Rd | 2 man/predict-commOccu-method.Rd | 2 man/surveyDashboard.Rd | 240 ++++++++++++++++++------------------ 13 files changed, 327 insertions(+), 321 deletions(-)
More information about phase12designs at CRAN
Permanent link
Title: Clustering of Functional Data via Mixtures of t-Distributions
Description: Extension of 'funHDDC' Schmutz et al. (2018)
<doi:10.1007/s00180-020-00958-4> for cases including
outliers by fitting t-distributions for robust groups. 'TFunHDDC' can cluster
univariate or multivariate data produced by the 'fda' package for data using
a b-splines or Fourier basis.
Author: Cristina Anton [aut, cre],
Iain Smith [aut],
Malcolm Nielsen [aut],
Jeffrey Andrews [ctb],
Jaymeson Wickins [ctb],
Nicholas Boers [ctb],
Paul McNicholas [ctb],
Amandine Schmutz [ctb],
Julien Jacques [ctb],
Charles Bouveyron [ctb]
Maintainer: Cristina Anton <popescuc@macewan.ca>
Diff between TFunHDDC versions 1.0.1 dated 2023-06-04 and 1.0.2 dated 2025-09-02
DESCRIPTION | 8 MD5 | 6 man/predict.tfunHDDC.Rd | 215 +++++++++++------------ man/tfunHDDC.Rd | 444 ++++++++++++++++++++++++------------------------ 4 files changed, 336 insertions(+), 337 deletions(-)
Title: Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Description: Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Author: Aaron Robotham [aut, cre]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between magicaxis versions 2.4.5 dated 2024-01-31 and 2.5.1 dated 2025-09-02
DESCRIPTION | 16 ++-- MD5 | 23 +++--- NAMESPACE | 2 R/magbin.R | 60 ++++++++++++--- R/magerr.R | 12 +++ R/magmap.R | 203 ++++++++++++++++++++++++++++++++--------------------- README.md |only man/magbin.Rd | 25 ++++-- man/magerr.Rd | 4 - man/magimage.Rd | 2 man/magplot.Rd | 2 man/magproj.Rd | 19 ++-- man/plot.magbin.Rd | 2 13 files changed, 242 insertions(+), 128 deletions(-)
Title: N-Dimensional Hyperplane Fitting with Errors
Description: High level functions for hyperplane fitting (hyper.fit()) and visualising (hyper.plot2d() / hyper.plot3d()). In simple terms this allows the user to produce robust 1D linear fits for 2D x vs y type data, and robust 2D plane fits to 3D x vs y vs z type data. This hyperplane fitting works generically for any N-1 hyperplane model being fit to a N dimension dataset. All fits include intrinsic scatter in the generative model orthogonal to the hyperplane.
Author: Aaron Robotham [cre, aut, cph] ,
Danail Obreschkow [aut, ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between hyper.fit versions 1.2.1 dated 2024-06-06 and 1.2.2 dated 2025-09-02
hyper.fit-1.2.1/hyper.fit/data/FP6dFGS.tab |only hyper.fit-1.2.1/hyper.fit/data/GAMAsmVsize.tab |only hyper.fit-1.2.1/hyper.fit/data/MJB.tab |only hyper.fit-1.2.1/hyper.fit/data/TFR.tab |only hyper.fit-1.2.1/hyper.fit/data/convtest1dNorm.tab |only hyper.fit-1.2.1/hyper.fit/data/convtest2dLD.tab |only hyper.fit-1.2.1/hyper.fit/data/convtest2dOpt.tab |only hyper.fit-1.2.1/hyper.fit/data/hogg.tab |only hyper.fit-1.2.1/hyper.fit/data/intrin.tab |only hyper.fit-1.2.1/hyper.fit/data/trumpet.tab |only hyper.fit-1.2.2/hyper.fit/DESCRIPTION | 12 +++--- hyper.fit-1.2.2/hyper.fit/MD5 | 34 +++++++++---------- hyper.fit-1.2.2/hyper.fit/build/partial.rdb |binary hyper.fit-1.2.2/hyper.fit/data/FP6dFGS.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/GAMAsmVsize.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/MJB.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/TFR.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/convtest1dNorm.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/convtest2dLD.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/convtest2dOpt.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/hogg.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/intrin.tab.gz |only hyper.fit-1.2.2/hyper.fit/data/trumpet.tab.gz |only hyper.fit-1.2.2/hyper.fit/man/hyper.fit-data.Rd | 15 -------- hyper.fit-1.2.2/hyper.fit/man/hyper.fit-package.Rd | 2 - hyper.fit-1.2.2/hyper.fit/man/hyper.fit.Rd | 10 +++-- hyper.fit-1.2.2/hyper.fit/man/hyper.plot.Rd | 3 + hyper.fit-1.2.2/hyper.fit/man/hyper.summary.Rd | 2 - 28 files changed, 36 insertions(+), 42 deletions(-)