Title: Stepped Wedge Cluster Randomized Trial (SW CRT) Design
Description: A set of tools for examining the design and analysis aspects of
stepped wedge cluster randomized trials (SW CRT) based on a repeated
cross-sectional or cohort sampling scheme (Hussey MA and Hughes JP (2007)
Contemporary Clinical Trials 28:182-191).
Author: Jim Hughes [aut, cre],
Navneet R. Hakhu [aut],
Emily Voldal [aut],
Fan Xia [aut]
Maintainer: Jim Hughes <jphughes@uw.edu>
Diff between swCRTdesign versions 4.0 dated 2023-08-25 and 4.1 dated 2025-09-04
DESCRIPTION | 36 +++++- MD5 | 41 ++++--- NAMESPACE | 4 R/swGlmPwr.R | 192 +++++++++++++++++++++-------------- R/swGlmSiz.R |only R/swPlot.R | 48 +++++--- R/swPwr.r | 132 +++++++++++++++++------- R/swSim.R | 6 - R/swSim2.R |only R/swSimPwr.R | 244 ++++++++++++++++++++++++++++++--------------- R/swSiz.R |only R/swSummary.R | 53 +++++++-- README.md |only man/ReleaseNotes.Rd | 46 +++----- man/blkDiag.Rd | 2 man/swCRTdesign-package.Rd | 75 +++++++++++++ man/swDsn.Rd | 10 - man/swGlmPwr.Rd | 63 ++++++++++- man/swGlmSiz.Rd |only man/swPlot.Rd | 13 +- man/swPwr.Rd | 88 +++++++++++----- man/swSim2.Rd |only man/swSimPwr.Rd | 17 ++- man/swSiz.Rd |only man/swSummary.Rd | 14 ++ 25 files changed, 759 insertions(+), 325 deletions(-)
Title: General Effect Modelling
Description: Two-step modeling with separation of sources of variation through analysis of variance and subsequent multivariate
modeling through a range of unsupervised and supervised statistical methods. Separation can focus on removal of interfering
effects or isolation of effects of interest. EF Mosleth et al. (2021) <doi:10.1038/s41598-021-82388-w> and EF Mosleth et al.
(2020) <doi:10.1016/B978-0-12-409547-2.14882-6>.
Author: Kristian Hovde Liland [aut, cre],
Ellen Faergestad Mosleth [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between gemR versions 1.2.1 dated 2025-06-27 and 1.2.2 dated 2025-09-04
gemR-1.2.1/gemR/man/pls.Rd |only gemR-1.2.2/gemR/DESCRIPTION | 13 ++++++------ gemR-1.2.2/gemR/MD5 | 26 ++++++++++++------------ gemR-1.2.2/gemR/NAMESPACE | 2 - gemR-1.2.2/gemR/NEWS | 22 ++++++++++++++++---- gemR-1.2.2/gemR/R/elastic.R | 8 ++++--- gemR-1.2.2/gemR/R/knock.in.R | 4 +++ gemR-1.2.2/gemR/R/neuralnet.R | 3 ++ gemR-1.2.2/gemR/R/pls.R | 41 +++++++++++++++++---------------------- gemR-1.2.2/gemR/R/sca.R | 2 - gemR-1.2.2/gemR/README.md | 3 +- gemR-1.2.2/gemR/man/knock.in.Rd | 4 +++ gemR-1.2.2/gemR/man/pls.GEM.Rd |only gemR-1.2.2/gemR/man/reexports.Rd | 5 ++-- gemR-1.2.2/gemR/man/sca.Rd | 2 - 15 files changed, 79 insertions(+), 56 deletions(-)
Title: Manipulate ACLED Data
Description: Tools working with data from ACLED (Armed Conflict Location and Event Data). Functions include simplified access to ACLED's API (<https://apidocs.acleddata.com/>), methods for keeping local versions of ACLED data up-to-date, and functions for common ACLED data transformations.
Author: Armed Conflict Location and Event Data ACLED [cph],
Trey Billing [aut, cre],
Lucas Fagliano [aut],
Katayoun Kishi [ctb]
Maintainer: Trey Billing <t.billing@acleddata.com>
Diff between acledR versions 0.1.0 dated 2025-02-24 and 1.0.0 dated 2025-09-04
acledR-0.1.0/acledR/vignettes/workflow.png |only acledR-1.0.0/acledR/DESCRIPTION | 10 acledR-1.0.0/acledR/MD5 | 67 +- acledR-1.0.0/acledR/NAMESPACE | 2 acledR-1.0.0/acledR/NEWS.md | 5 acledR-1.0.0/acledR/R/acled_access.R | 5 acledR-1.0.0/acledR/R/acled_api.R | 246 ++++++---- acledR-1.0.0/acledR/R/acled_auth.R |only acledR-1.0.0/acledR/R/acled_deletions_api.R | 180 ++++++- acledR-1.0.0/acledR/R/acled_transform_interaction.R | 5 acledR-1.0.0/acledR/R/acled_transform_longer.R | 6 acledR-1.0.0/acledR/R/acled_transform_wider.R | 6 acledR-1.0.0/acledR/R/acled_update.R | 98 ++- acledR-1.0.0/acledR/README.md | 7 acledR-1.0.0/acledR/inst/doc/get_started.R | 16 acledR-1.0.0/acledR/inst/doc/get_started.Rmd | 32 - acledR-1.0.0/acledR/inst/doc/get_started.html | 174 +++---- acledR-1.0.0/acledR/man/acled_access.Rd | 8 acledR-1.0.0/acledR/man/acled_api.Rd | 23 acledR-1.0.0/acledR/man/acled_auth.Rd |only acledR-1.0.0/acledR/man/acled_deletions_api.Rd | 9 acledR-1.0.0/acledR/man/acled_transform_interaction.Rd | 5 acledR-1.0.0/acledR/man/acled_transform_longer.Rd | 6 acledR-1.0.0/acledR/man/acled_transform_wider.Rd | 6 acledR-1.0.0/acledR/man/acled_update.Rd | 20 acledR-1.0.0/acledR/tests/testthat/setup-acled_api.R | 84 ++- acledR-1.0.0/acledR/tests/testthat/setup-acled_deletions_api.R | 18 acledR-1.0.0/acledR/tests/testthat/setup-acled_transform_interaction.R | 8 acledR-1.0.0/acledR/tests/testthat/setup-acled_update.R | 18 acledR-1.0.0/acledR/tests/testthat/test-acled_access.R | 2 acledR-1.0.0/acledR/tests/testthat/test-acled_api.R | 237 +++------ acledR-1.0.0/acledR/tests/testthat/test-acled_deletions_api.R | 80 --- acledR-1.0.0/acledR/tests/testthat/test-acled_transform_longer.R | 13 acledR-1.0.0/acledR/tests/testthat/test-acled_transform_wider.R | 26 - acledR-1.0.0/acledR/tests/testthat/test-acled_update.R | 45 - acledR-1.0.0/acledR/vignettes/get_started.Rmd | 32 - 36 files changed, 815 insertions(+), 684 deletions(-)
Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. mean±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] ,
Franziska Eidloth [aut],
Bilal Asser [aut]
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.9.8 dated 2025-07-10 and 0.9.9 dated 2025-09-04
wrappedtools-0.9.8/wrappedtools/tests/testthat/compare2numvars_out.rda |only wrappedtools-0.9.8/wrappedtools/tests/testthat/test-compare_2_numvars.R |only wrappedtools-0.9.9/wrappedtools/DESCRIPTION | 10 wrappedtools-0.9.9/wrappedtools/MD5 | 24 wrappedtools-0.9.9/wrappedtools/NEWS.md | 4 wrappedtools-0.9.9/wrappedtools/R/basefunctions.R | 244 wrappedtools-0.9.9/wrappedtools/R/pkgstart.R | 115 wrappedtools-0.9.9/wrappedtools/R/tests.R | 2741 +++++----- wrappedtools-0.9.9/wrappedtools/inst/doc/wrappedtools.html | 6 wrappedtools-0.9.9/wrappedtools/man/ColSeeker.Rd | 8 wrappedtools-0.9.9/wrappedtools/man/bt.Rd | 2 wrappedtools-0.9.9/wrappedtools/man/compare_n_numvars.Rd | 1 wrappedtools-0.9.9/wrappedtools/man/flex2rmd.Rd | 4 wrappedtools-0.9.9/wrappedtools/man/identical_cols.Rd | 2 14 files changed, 1588 insertions(+), 1573 deletions(-)
Title: Connect to the 'nettskjema.no' API of the University of Oslo
Description: Enables users to retrieve data, meta-data, and codebooks from
<https://nettskjema.no/>. The data from the API is richer than from
the online data portal. This package is not developed
by the University of Oslo IT. Mowinckel (2021) <doi:10.5281/zenodo.4745481>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Trym Nohr Fjoertoft [ctb]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between nettskjemar versions 1.0.2 dated 2025-06-06 and 1.0.3 dated 2025-09-04
nettskjemar-1.0.2/nettskjemar/README.md |only nettskjemar-1.0.2/nettskjemar/inst/Nettskjema_api.png |only nettskjemar-1.0.2/nettskjemar/inst/Nettskjema_api.svg |only nettskjemar-1.0.2/nettskjemar/tests/fixtures |only nettskjemar-1.0.2/nettskjemar/vignettes/attachments.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/authentication.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/forms.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/labelled_data.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/metadata.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/nettskjemar.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/submissions.Rmd.orig |only nettskjemar-1.0.3/nettskjemar/DESCRIPTION | 13 nettskjemar-1.0.3/nettskjemar/MD5 | 190 ++- nettskjemar-1.0.3/nettskjemar/NAMESPACE | 1 nettskjemar-1.0.3/nettskjemar/NEWS.md | 8 nettskjemar-1.0.3/nettskjemar/R/nettskjemar-package.R | 4 nettskjemar-1.0.3/nettskjemar/R/ns-auth.R | 10 nettskjemar-1.0.3/nettskjemar/R/ns-data.R | 13 nettskjemar-1.0.3/nettskjemar/R/ns-data_labels.R | 24 nettskjemar-1.0.3/nettskjemar/R/ns-form.R | 29 nettskjemar-1.0.3/nettskjemar/R/ns-me.R | 7 nettskjemar-1.0.3/nettskjemar/R/ns-meta.R | 12 nettskjemar-1.0.3/nettskjemar/R/ns-sitrep.R |only nettskjemar-1.0.3/nettskjemar/R/ns-submission.R | 9 nettskjemar-1.0.3/nettskjemar/R/utils.R | 22 nettskjemar-1.0.3/nettskjemar/build/partial.rdb |binary nettskjemar-1.0.3/nettskjemar/build/vignette.rds |binary nettskjemar-1.0.3/nettskjemar/inst/WORDLIST | 121 +- nettskjemar-1.0.3/nettskjemar/inst/_vcr |only nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.Rmd | 98 - nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.html | 122 +- nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.Rmd | 73 - nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.html | 106 -- nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.Rmd |only nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.html |only nettskjemar-1.0.3/nettskjemar/inst/doc/forms.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/forms.Rmd | 59 - nettskjemar-1.0.3/nettskjemar/inst/doc/forms.html | 135 +- nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.Rmd | 344 ------ nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.html | 247 +--- nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.Rmd | 123 -- nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.html | 33 nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.Rmd | 295 ----- nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.html | 427 ++------ nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.Rmd | 22 nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.html | 529 +++++++++- nettskjemar-1.0.3/nettskjemar/inst/nettskjemar.png |only nettskjemar-1.0.3/nettskjemar/inst/nettskjemar.svg |only nettskjemar-1.0.3/nettskjemar/man/figures/logo.png |binary nettskjemar-1.0.3/nettskjemar/man/nettskjemar-package.Rd | 2 nettskjemar-1.0.3/nettskjemar/man/ns_client.Rd | 3 nettskjemar-1.0.3/nettskjemar/man/ns_get_data.Rd | 13 nettskjemar-1.0.3/nettskjemar/man/ns_get_form_reports.Rd | 11 nettskjemar-1.0.3/nettskjemar/man/ns_get_forms.Rd | 10 nettskjemar-1.0.3/nettskjemar/man/ns_get_me.Rd | 7 nettskjemar-1.0.3/nettskjemar/man/ns_get_meta.Rd | 10 nettskjemar-1.0.3/nettskjemar/man/ns_get_submission.Rd | 9 nettskjemar-1.0.3/nettskjemar/man/ns_sitrep.Rd |only nettskjemar-1.0.3/nettskjemar/tests/_vcr |only nettskjemar-1.0.3/nettskjemar/tests/testthat/helpers.R | 18 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-data_labels.R | 6 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-attachment.R | 11 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-auth.R | 20 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-codebook.R | 7 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-me.R | 4 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-meta.R | 12 nettskjemar-1.0.3/nettskjemar/vignettes/_vcr |only nettskjemar-1.0.3/nettskjemar/vignettes/attachments.Rmd | 98 - nettskjemar-1.0.3/nettskjemar/vignettes/authentication.Rmd | 73 - nettskjemar-1.0.3/nettskjemar/vignettes/custom_requests.Rmd |only nettskjemar-1.0.3/nettskjemar/vignettes/forms.Rmd | 59 - nettskjemar-1.0.3/nettskjemar/vignettes/labelled_data.Rmd | 344 ------ nettskjemar-1.0.3/nettskjemar/vignettes/metadata.Rmd | 123 -- nettskjemar-1.0.3/nettskjemar/vignettes/nettskjemar.Rmd | 295 ----- nettskjemar-1.0.3/nettskjemar/vignettes/submissions.Rmd | 22 82 files changed, 1800 insertions(+), 2433 deletions(-)
Title: Accessing 'SimFin' Data
Description: Through simfinapi, you can intuitively access the 'SimFin'
Web-API (<https://www.simfin.com/>) to make 'SimFin' data easily
available in R. To obtain an 'SimFin' API key (and thus to use this
package), you need to register at <https://app.simfin.com/login>.
Author: Matthias Gomolka [aut, cre]
Maintainer: Matthias Gomolka <matthias.gomolka@posteo.de>
Diff between simfinapi versions 1.0.0 dated 2024-02-27 and 1.0.1 dated 2025-09-04
simfinapi-1.0.0/simfinapi/tests/testthat/test-sfa_load_statement.R |only simfinapi-1.0.1/simfinapi/DESCRIPTION | 10 simfinapi-1.0.1/simfinapi/MD5 | 56 +- simfinapi-1.0.1/simfinapi/NEWS.md | 4 simfinapi-1.0.1/simfinapi/R/call_api.R | 3 simfinapi-1.0.1/simfinapi/R/check_inputs.R | 204 +++++----- simfinapi-1.0.1/simfinapi/R/sfa_load__shares_outstanding.R | 22 - simfinapi-1.0.1/simfinapi/R/sfa_load_companies.R | 7 simfinapi-1.0.1/simfinapi/R/sfa_load_shareprices.R | 5 simfinapi-1.0.1/simfinapi/R/sfa_load_statement.R | 13 simfinapi-1.0.1/simfinapi/R/sfa_set_api_key.R | 4 simfinapi-1.0.1/simfinapi/R/utils.R | 5 simfinapi-1.0.1/simfinapi/R/zzz.R | 6 simfinapi-1.0.1/simfinapi/README.md | 107 +---- simfinapi-1.0.1/simfinapi/build/vignette.rds |binary simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.R | 4 simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.Rmd | 4 simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.html | 1 simfinapi-1.0.1/simfinapi/man/figures/README-plot_data-1.png |binary simfinapi-1.0.1/simfinapi/man/sfa_load_common_shares_outstanding.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_shareprices.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_statements.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_weighted_shares_outstanding.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_set_api_key.Rd | 4 simfinapi-1.0.1/simfinapi/tests/testthat/test-call_api.R | 3 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_load_companies.R | 19 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_load_statements.R |only simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_set_cache_dir.R | 6 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_set_key.R | 6 simfinapi-1.0.1/simfinapi/vignettes/simfinapi.Rmd | 4 30 files changed, 234 insertions(+), 271 deletions(-)
Title: Calculations and Visualisations Related to Geometric
Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph],
Gregory Jefferis [ctb],
Dryden Ian [cph]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Morpho versions 2.12 dated 2023-12-06 and 2.13 dated 2025-09-04
DESCRIPTION | 16 +++++++-------- MD5 | 48 +++++++++++++++++++++++++++------------------- NAMESPACE | 11 ++++++++++ R/ILDS.r |only R/Morpho-package.R | 6 ++--- R/computeArea.r | 4 ++- R/icpmat.r | 29 +++++++++++++++++++++++++-- R/inscribeEllipse.r |only R/meshDist.r | 10 ++++----- R/meshDistMatrix.r | 2 - R/prcompfast.r | 2 - R/virtualMeshScan.r | 2 - R/warpmovie.matrix.r | 2 - inst/NEWS.Rd | 17 ++++++++++++++++ man/ILDS.Rd |only man/ILDSR2.Rd |only man/Morpho-package.Rd | 30 ++++++++++++++-------------- man/getOuterViewpoints.Rd | 2 - man/icpmat.Rd | 10 +++++++-- man/inscribeEllipse.Rd |only man/inscribeEllipseRot.Rd |only man/meshDist.Rd | 6 ++--- man/plot.ILDSR2.Rd |only man/render.Rd | 4 +-- man/visualize.Rd |only man/warpmovie3d.Rd | 2 - src/Makevars | 3 +- src/init.c | 4 +++ src/inscribeEllipse.cpp |only src/inscribeEllipse.h |only 30 files changed, 143 insertions(+), 67 deletions(-)
Title: Gradient-Based Recognition of Spatial Patterns in Environmental
Data
Description: Provides algorithms for detection of spatial patterns from oceanographic data using image processing methods based on Gradient Recognition.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between grec versions 1.6.1 dated 2025-01-23 and 1.6.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 3 +++ R/SpatRaster-class.R | 26 ++++++++------------------ R/grec-main.R | 8 ++++---- R/grec-package.R | 2 +- build/partial.rdb |binary man/getGradients.Rd | 8 ++++---- 9 files changed, 33 insertions(+), 39 deletions(-)
Title: Generalized Linear Models for Categorical Responses
Description: In statistical modeling, there is a wide variety of regression models for categorical dependent variables (nominal or ordinal data); yet, there is no software embracing all these models together in a uniform and generalized format. Following the methodology proposed by Peyhardi, Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce 'GLMcat', an R package to estimate generalized linear models implemented under the unified specification (r, F, Z). Where r represents the ratio of probabilities (reference, cumulative, adjacent, or sequential), F the cumulative cdf function for the linkage, and Z, the design matrix. The package accompanies the paper "GLMcat: An R Package for Generalized Linear Models for Categorical Responses" in the Journal of Statistical Software, Volume 114, Issue 9 (see <doi:10.18637/jss.v114.i09>).
Author: Lorena Leon [aut, cre],
Jean Peyhardi [aut],
Catherine Trottier [aut]
Maintainer: Lorena Leon <ylorenaleonv@gmail.com>
Diff between GLMcat versions 0.2.7 dated 2024-09-20 and 1.0.0 dated 2025-09-04
DESCRIPTION | 10 - MD5 | 19 +-- NEWS.md | 7 + build/vignette.rds |binary inst/CITATION |only inst/doc/Discrete_CM_examples.pdf |binary inst/doc/GLMcat_tutorial.R | 4 inst/doc/GLMcat_tutorial.pdf |binary inst/doc/Var_sel_ex.pdf |binary man/discrete_cm.Rd | 207 +++++++++++++++++++------------------- man/glmcat.Rd | 175 ++++++++++++++++---------------- 11 files changed, 217 insertions(+), 205 deletions(-)
Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time
Series Forecasting Framework, aka Finn, can be used to forecast any component of the income
statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time,
Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn was built
to meet the needs of financial analysts to better forecast their businesses within a company, and has
a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] ,
Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>
Diff between finnts versions 0.5.0 dated 2024-10-25 and 0.6.0 dated 2025-09-04
DESCRIPTION | 10 +-- MD5 | 42 ++++++------- NEWS.md | 16 +++++ R/ensemble_models.R | 2 R/feature_selection.R | 14 +++- R/final_models.R | 25 +++++--- R/forecast_time_series.R | 3 R/hierarchy.R | 6 + R/models.R | 41 ++++++++++--- R/multistep_helper.R | 2 R/prep_data.R | 25 -------- R/prep_models.R | 37 +++++++++--- R/train_models.R | 58 ++++++++++++++++++- R/utility.R | 2 inst/doc/back-testing-and-hyperparameter-tuning.html | 10 +-- inst/doc/models-used-in-finnts.R | 10 +-- inst/doc/models-used-in-finnts.Rmd | 10 +-- inst/doc/models-used-in-finnts.html | 2 man/forecast_time_series.Rd | 3 man/prep_data.Rd | 3 man/prep_models.Rd | 7 +- vignettes/models-used-in-finnts.Rmd | 10 +-- 22 files changed, 222 insertions(+), 116 deletions(-)
Title: Epigenome-Wide Mediation Analysis Study
Description: DNA methylation is essential for human, and environment can change the DNA methylation
and affect body status. Epigenome-Wide Mediation Analysis Study (EMAS) can find
potential mediator CpG sites between exposure (x) and outcome (y) in epigenome-wide.
For more information on the methods we used, please see the following references:
Tingley, D. (2014) <doi:10.18637/jss.v059.i05>,
Turner, S. D. (2018) <doi:10.21105/joss.00731>,
Rosseel, D. (2012) <doi:10.18637/jss.v048.i02>.
Author: Xiuquan Nie [aut, cph, cre],
Mengyi Wang [ctb, rev]
Maintainer: Xiuquan Nie <niexiuquan1995@foxmail.com>
Diff between EMAS versions 0.2.2 dated 2022-08-11 and 0.2.3 dated 2025-09-04
DESCRIPTION | 22 +++++++++------------- MD5 | 16 ++++++++-------- R/EMAS.manhattan.R | 2 +- R/Emas.R | 4 +--- R/Emas.parallel.R | 2 +- build/partial.rdb |binary man/EMAS.manhattan.Rd | 2 +- man/Emas.Rd | 4 +--- man/Emas.parallel.Rd | 2 +- 9 files changed, 23 insertions(+), 31 deletions(-)
Title: Ensemble Learning Framework for Diagnostic and Prognostic
Modeling
Description: Provides a framework to build and evaluate diagnosis or
prognosis models using stacking, voting, and bagging ensemble
techniques with various base learners. The package also includes
tools for visualization and interpretation of models. The development
version of the package is available on 'GitHub' at
<https://github.com/xiaojie0519/E2E>. The methods
are based on the foundational work of Breiman (1996) <doi:10.1007/BF00058655>
on bagging and Wolpert (1992) <doi:10.1016/S0893-6080(05)80023-1>
on stacking.
Author: Shanjie Luan [aut, cre]
Maintainer: Shanjie Luan <Luan20050519@163.com>
Diff between E2E versions 0.0.3 dated 2025-08-26 and 0.1.0 dated 2025-09-04
E2E-0.0.3/E2E/vignettes/Dia_SHAP_Example.pdf |only E2E-0.0.3/E2E/vignettes/Diagnostic_Matrix.pdf |only E2E-0.0.3/E2E/vignettes/Diagnostic_PRC.png |only E2E-0.0.3/E2E/vignettes/Diagnostic_ROC.pdf |only E2E-0.0.3/E2E/vignettes/Pro_SHAP_Example.pdf |only E2E-0.0.3/E2E/vignettes/Prognostic_KM.pdf |only E2E-0.0.3/E2E/vignettes/Prognostic_TDROC.pdf |only E2E-0.1.0/E2E/DESCRIPTION | 6 E2E-0.1.0/E2E/MD5 | 51 +- E2E-0.1.0/E2E/NAMESPACE | 3 E2E-0.1.0/E2E/R/Figure.R | 47 +- E2E-0.1.0/E2E/R/diagnosis.R | 513 +++++++++++++++--------- E2E-0.1.0/E2E/README.md | 4 E2E-0.1.0/E2E/build/vignette.rds |binary E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.R | 23 - E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.Rmd | 23 - E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.html | 110 +---- E2E-0.1.0/E2E/inst/doc/getting-started.Rmd | 6 E2E-0.1.0/E2E/inst/doc/getting-started.html | 14 E2E-0.1.0/E2E/inst/doc/parameter-reference.Rmd |only E2E-0.1.0/E2E/inst/doc/parameter-reference.html |only E2E-0.1.0/E2E/inst/doc/prognostic-workflow.R | 2 E2E-0.1.0/E2E/inst/doc/prognostic-workflow.Rmd | 2 E2E-0.1.0/E2E/inst/doc/prognostic-workflow.html | 2 E2E-0.1.0/E2E/man/apply_dia.Rd | 85 ++- E2E-0.1.0/E2E/man/bagging_dia.Rd | 10 E2E-0.1.0/E2E/man/evaluate_model_dia.Rd | 13 E2E-0.1.0/E2E/man/evaluate_predictions_dia.Rd |only E2E-0.1.0/E2E/vignettes/diagnostic-workflow.Rmd | 23 - E2E-0.1.0/E2E/vignettes/getting-started.Rmd | 6 E2E-0.1.0/E2E/vignettes/parameter-reference.Rmd |only E2E-0.1.0/E2E/vignettes/prognostic-workflow.Rmd | 2 32 files changed, 499 insertions(+), 446 deletions(-)
Title: Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Description: This natural language processing toolkit provides language-agnostic
'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency
parsing' of raw text. Next to text parsing, the package also allows you to train
annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided
at <https://universaldependencies.org/format.html>. The techniques are explained
in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0
with UDPipe', available at <doi:10.18653/v1/K17-3009>.
The toolkit also contains functionalities for commonly used data manipulations on texts
which are enriched with the output of the parser. Namely functionalities and algorithms
for collocations, token co-occurrence, document term matrix handling,
term frequency inverse document frequency calculations,
information retrieval metrics (Okapi BM25), handling of multi-word expressions,
keyword detection (Rapid Automatic Keyword Extraction, noun phrase extraction, syntact [...truncated...]
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Institute of Formal and Applied Linguistics, Faculty of Mathematics and
Physics, Charles University in Prague, Czech Republic [cph],
Milan Straka [ctb, cph],
Jana Strakova [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between udpipe versions 0.8.11 dated 2023-01-06 and 0.8.12 dated 2025-09-04
DESCRIPTION | 6 - MD5 | 60 +++++++++--------- NEWS.md | 8 ++ R/datasets.R | 10 +-- R/topicmodels.R | 8 +- R/udpipe_models.R | 58 ++++++++--------- R/udpipe_parse.R | 48 +++++++------- R/udpipe_train.R | 16 ++-- R/utils.R | 13 +-- build/vignette.rds |binary inst/doc/udpipe-annotation.Rmd | 2 inst/doc/udpipe-annotation.html | 6 - inst/doc/udpipe-parallel.html | 6 - inst/doc/udpipe-train.html | 6 - inst/doc/udpipe-tryitout.html | 4 - inst/doc/udpipe-universe.html | 4 - inst/doc/udpipe-usecase-postagging-lemmatisation.html | 4 - inst/doc/udpipe-usecase-topicmodelling.html | 4 - man/brussels_listings.Rd | 4 - man/brussels_reviews.Rd | 4 - man/brussels_reviews_anno.Rd | 2 man/predict.LDA.Rd | 8 +- man/txt_tagsequence.Rd | 13 +-- man/udpipe.Rd | 40 ++++++------ man/udpipe_accuracy.Rd | 4 - man/udpipe_annotate.Rd | 8 +- man/udpipe_download_model.Rd | 54 ++++++++-------- man/udpipe_load_model.Rd | 4 - man/udpipe_train.Rd | 12 +-- src/udpipe.cpp | 6 - vignettes/udpipe-annotation.Rmd | 2 31 files changed, 215 insertions(+), 209 deletions(-)
Title: Analysis and Visualization of Archaeological Count Data
Description: An easy way to examine archaeological count data. This
package provides several tests and measures of diversity:
heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),
richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and
similarity (Brainerd-Robinson, etc.). It allows to easily visualize
count data and statistical thresholds: rank vs abundance plots,
heatmaps, Ford (1962) and Bertin (1977) diagrams, etc.
Author: Nicolas Frerebeau [aut, cre] ,
Matthew Peeples [ctb] ,
Ben Marwick [ctb] ,
Jean-Baptiste Fourvel [ctb] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tabula versions 3.3.1 dated 2025-05-15 and 3.3.2 dated 2025-09-04
DESCRIPTION | 11 ++++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/plot_ford.R | 5 ++++- R/tabula-package.R | 2 +- README.md | 17 ++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alpha.html | 2 +- inst/doc/beta.html | 2 +- inst/po/fr/LC_MESSAGES/R-tabula.mo |binary man/tabula-package.Rd | 3 ++- po/R-fr.po | 4 ++-- 13 files changed, 45 insertions(+), 29 deletions(-)
Title: R Interface to 'Quarto' Markdown Publishing System
Description: Convert R Markdown documents and 'Jupyter' notebooks to a
variety of output formats using 'Quarto'.
Author: JJ Allaire [aut] ,
Christophe Dervieux [cre, aut] ,
Posit Software, PBC [cph, fnd],
Gordon Woodhull [ctb]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between quarto versions 1.5.0 dated 2025-07-28 and 1.5.1 dated 2025-09-04
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 467 +++++++++++++++++----------------- R/render.R | 459 ++++++++++++++++----------------- inst/doc/advanced-vignettes.html | 2 inst/doc/dynamic-metadata.html | 6 inst/doc/hello-pdf.pdf |binary inst/doc/hello.html | 2 inst/doc/publishing.html | 2 inst/doc/r-scripts.html | 6 man/quarto_render.Rd | 251 +++++++++--------- tests/testthat/helpers.R | 4 tests/testthat/test-utils-extract.R | 2 tests/testthat/test-utils.R | 494 ++++++++++++++++++------------------ 14 files changed, 867 insertions(+), 860 deletions(-)
Title: Khattree-Bahuguna's Univariate and Multivariate Skewness
Description: Computes Khattree-Bahuguna's univariate and multivariate skewness, principal-component-based Khattree-Bahuguna's multivariate skewness. It also provides several measures of univariate or multivariate skewnesses including, Pearson’s coefficient of skewness, Bowley’s univariate skewness and Mardia's multivariate skewness. See Khattree, R. and Bahuguna, M. (2019) <doi: 10.1007/s41060-018-0106-1>.
Author: Zhixin Lun [aut, cre] ,
Ravindra Khattree [aut]
Maintainer: Zhixin Lun <zhixin.lun@cuanschutz.edu>
Diff between KbMvtSkew versions 1.0.2 dated 2020-03-23 and 1.1.0 dated 2025-09-04
DESCRIPTION | 22 +++++++++++----------- MD5 | 18 +++++++++--------- NAMESPACE | 22 +++++++++++----------- R/KbSkewness.R | 12 ++++++++---- man/data-Chatterjee.Rd | 4 +++- man/data-OlymWomen.Rd | 4 +++- man/data-SwissHead.Rd | 4 +++- man/kbMvtSkew.Rd | 6 ++++-- man/kbSkew.Rd | 2 ++ man/pcKbSkew.Rd | 4 ++-- 10 files changed, 56 insertions(+), 42 deletions(-)
Title: A Unified Data Layer for Large-Scale Single-Cell, Spatial and
Bulk Immunomics
Description: Provides a unified data layer for single-cell, spatial and bulk
T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject,
but for AIRR data.
Author: Vadim I. Nazarov [aut, cre]
Maintainer: Vadim I. Nazarov <support@immunomind.com>
Diff between immundata versions 0.0.1 dated 2025-04-08 and 0.0.3 dated 2025-09-04
immundata-0.0.1/immundata/R/immundata.R |only immundata-0.0.1/immundata/R/load_immundata.R |only immundata-0.0.1/immundata/R/load_metadata.R |only immundata-0.0.1/immundata/R/load_repertoires.R |only immundata-0.0.1/immundata/R/load_repertoires_utils.R |only immundata-0.0.1/immundata/R/mouse-ici.R |only immundata-0.0.1/immundata/R/receptor_schema.R |only immundata-0.0.1/immundata/R/utils.R |only immundata-0.0.1/immundata/inst/extdata/metadata_samples.tsv |only immundata-0.0.1/immundata/inst/extdata/sample_0_1k.tsv |only immundata-0.0.1/immundata/inst/extdata/sample_1k_2k.tsv |only immundata-0.0.1/immundata/man/imd_files.Rd |only immundata-0.0.1/immundata/man/load_immundata.Rd |only immundata-0.0.1/immundata/man/load_metadata.Rd |only immundata-0.0.1/immundata/man/load_repertoires.Rd |only immundata-0.0.1/immundata/tests/testthat/test-data-manipulation.R |only immundata-0.0.3/immundata/DESCRIPTION | 31 immundata-0.0.3/immundata/MD5 | 96 immundata-0.0.3/immundata/NAMESPACE | 67 immundata-0.0.3/immundata/R/core_immundata.R |only immundata-0.0.3/immundata/R/globals.R | 181 + immundata-0.0.3/immundata/R/immundata-package.R | 53 immundata-0.0.3/immundata/R/io_annotations_write.R |only immundata-0.0.3/immundata/R/io_immundata_conversion.R |only immundata-0.0.3/immundata/R/io_immundata_read.R |only immundata-0.0.3/immundata/R/io_immundata_write.R |only immundata-0.0.3/immundata/R/io_metadata_read.R |only immundata-0.0.3/immundata/R/io_repertoires_processing.R |only immundata-0.0.3/immundata/R/io_repertoires_read.R |only immundata-0.0.3/immundata/R/io_repertoires_utils.R |only immundata-0.0.3/immundata/R/operations_agg.R |only immundata-0.0.3/immundata/R/operations_annotate.R |only immundata-0.0.3/immundata/R/operations_count.R |only immundata-0.0.3/immundata/R/operations_filter.R |only immundata-0.0.3/immundata/R/operations_mutate.R |only immundata-0.0.3/immundata/R/operations_print.R |only immundata-0.0.3/immundata/R/operations_utils.R |only immundata-0.0.3/immundata/R/operations_utils_levenshtein.R |only immundata-0.0.3/immundata/R/test_utils.R |only immundata-0.0.3/immundata/R/zzz.R | 1 immundata-0.0.3/immundata/README.md | 1360 +++++++++- immundata-0.0.3/immundata/inst/extdata/single_cell |only immundata-0.0.3/immundata/inst/extdata/tsv |only immundata-0.0.3/immundata/man/IMD_GLOBALS.Rd | 4 immundata-0.0.3/immundata/man/ImmunData.Rd | 124 immundata-0.0.3/immundata/man/agg_receptors.Rd |only immundata-0.0.3/immundata/man/agg_repertoires.Rd |only immundata-0.0.3/immundata/man/annotate_immundata.Rd |only immundata-0.0.3/immundata/man/count.ImmunData.Rd |only immundata-0.0.3/immundata/man/filter_immundata.Rd |only immundata-0.0.3/immundata/man/from_immunarch.Rd |only immundata-0.0.3/immundata/man/get_test_idata.Rd |only immundata-0.0.3/immundata/man/imd_schema.Rd | 39 immundata-0.0.3/immundata/man/immundata-package.Rd | 14 immundata-0.0.3/immundata/man/make_receptor_schema.Rd |only immundata-0.0.3/immundata/man/make_seq_options.Rd |only immundata-0.0.3/immundata/man/mutate_immundata.Rd |only immundata-0.0.3/immundata/man/preprocess_postprocess.Rd |only immundata-0.0.3/immundata/man/read_immundata.Rd |only immundata-0.0.3/immundata/man/read_metadata.Rd |only immundata-0.0.3/immundata/man/read_repertoires.Rd |only immundata-0.0.3/immundata/man/write_immundata.Rd |only immundata-0.0.3/immundata/tests/testthat/test-annotate-barcodes.R |only immundata-0.0.3/immundata/tests/testthat/test-annotate-immundata.R |only immundata-0.0.3/immundata/tests/testthat/test-annotate-receptors.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-barcodes.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-exact.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-hamm.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-lev.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-regex.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-receptors.R |only immundata-0.0.3/immundata/tests/testthat/test-io-immundata-read.R |only immundata-0.0.3/immundata/tests/testthat/test-io-immundata-write.R |only immundata-0.0.3/immundata/tests/testthat/test-io-repertoires.R |only 75 files changed, 1662 insertions(+), 308 deletions(-)
Title: Cytokine Profiling Analysis Tool
Description: Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.
Author: Shubh Saraswat [cre, aut, cph] ,
Xiaohua Douglas Zhang [aut]
Maintainer: Shubh Saraswat <shubh.saraswat00@gmail.com>
Diff between CytoProfile versions 0.2.1 dated 2025-05-19 and 0.2.2 dated 2025-09-04
DESCRIPTION | 8 MD5 | 123 ++-- NAMESPACE | 6 NEWS.md | 21 R/cyt_anova.R | 39 - R/cyt_bp.R | 39 - R/cyt_bp2.R | 44 - R/cyt_dualflashplot.R | 71 +- R/cyt_errbp.R | 443 ++++++++------ R/cyt_heatmap.R | 204 ++++-- R/cyt_mint_splsda.R |only R/cyt_pca.R | 460 ++++++++++----- R/cyt_rf.R | 187 +++++- R/cyt_skku.R | 79 +- R/cyt_splsda.R | 966 +++++++++++++++++++++----------- R/cyt_ttest.R | 7 R/cyt_volc.R | 81 +- R/cyt_xgb.R | 162 +++-- R/data.R | 54 + README.md | 45 + data/ExampleData5.rda |only inst/WORDLIST | 14 inst/doc/getting_started.R | 23 inst/doc/getting_started.Rmd | 38 - inst/doc/getting_started.html | 291 +++++---- man/ExampleData5.Rd |only man/cyt_anova.Rd | 3 man/cyt_bp.Rd | 3 man/cyt_bp2.Rd | 3 man/cyt_dualflashplot.Rd | 3 man/cyt_errbp.Rd | 7 man/cyt_heatmap.Rd | 30 man/cyt_mint_splsda.Rd |only man/cyt_pca.Rd | 3 man/cyt_rf.Rd | 3 man/cyt_skku.Rd | 3 man/cyt_splsda.Rd | 29 man/cyt_ttest.Rd | 3 man/cyt_volc.Rd | 3 man/cyt_xgb.Rd | 3 man/figures/logo.png |binary man/figures/readme-EDA2-1.png |binary man/figures/readme-EDA2-2.png |binary man/figures/readme-EDA2-3.png |binary man/figures/readme-EDA2-4.png |binary man/figures/readme-EDA6-1.png |binary man/figures/readme-EDA7-1.png |binary man/figures/readme-Multivariate1-10.png |binary man/figures/readme-Multivariate1-4.png |binary man/figures/readme-Multivariate1-5.png |binary man/figures/readme-Multivariate1-6.png |binary man/figures/readme-Multivariate1-7.png |binary man/figures/readme-Multivariate1-9.png |binary man/figures/readme-Multivariate2-1.png |binary man/figures/readme-Multivariate2-2.png |binary man/figures/readme-Multivariate2-3.png |binary man/figures/readme-Multivariate2-4.png |binary man/figures/readme-Multivariate2-5.png |binary man/figures/readme-Multivariate2-6.png |binary man/figures/readme-Multivariate2-7.png |only man/figures/readme-Multivariate2-8.png |only man/figures/readme-Multivariate2-9.png |only man/figures/readme-Multivariate3-1.png |only man/figures/readme-Multivariate3-2.png |only man/figures/readme-Multivariate3-3.png |only man/figures/readme-Multivariate3-4.png |only man/figures/readme-Multivariate3-5.png |only man/figures/readme-Multivariate3-6.png |only vignettes/getting_started.Rmd | 38 - 69 files changed, 2372 insertions(+), 1167 deletions(-)
Title: Conditional Multivariate t Distribution, Expectation
Maximization Algorithm, and Its Stochastic Variants
Description: Computes conditional multivariate t probabilities, random deviates, and densities. It can also be used to create missing values at random in a dataset, resulting in a missing at random (MAR) mechanism. Inbuilt in the package are the Expectation-Maximization (EM), Monte Carlo EM, and Stochastic EM algorithms for imputation of missing values in datasets assuming the multivariate t distribution. See Kinyanjui, Tamba, Orawo, and Okenye (2020)<doi:10.3233/mas-200493>, and Kinyanjui, Tamba, and Okenye(2021)<http://www.ceser.in/ceserp/index.php/ijamas/article/view/6726/0> for more details.
Author: Paul Kinyanjui [aut, cre],
Cox Tamba [aut],
Justin Okenye [aut],
Luke Orawo [ctb]
Maintainer: Paul Kinyanjui <kinyanjui.access@gmail.com>
Diff between CondMVT versions 0.1.0 dated 2022-06-28 and 0.1.1 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SMCEM_Uonestep.R | 3 ++- man/pcmvt.Rd | 2 +- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Transformation Discriminant Analysis
Description: Performs transformation discrimination analysis and non-transformation discrimination analysis. It also includes functions for Linear Discriminant Analysis, Quadratic Discriminant Analysis, and Mixture Discriminant Analysis. In the context of mixture discriminant analysis, it offers options for both common covariance matrix (common sigma) and individual covariance matrices (uncommon sigma) for the mixture components.
Author: Jing Li [aut, cre],
Yana Melnykov [aut]
Maintainer: Jing Li <jli178@crimson.ua.edu>
Diff between transDA versions 1.0.1 dated 2025-06-09 and 1.0.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/tda.R | 2 +- demo/demotda.R | 8 ++++---- man/predict.tda.Rd | 2 +- man/summary.tda.Rd | 2 +- man/tda.Rd | 10 +++++----- man/transDA-package.Rd | 9 ++++----- 8 files changed, 27 insertions(+), 28 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.8.2 dated 2025-06-12 and 3.8.3 dated 2025-09-04
rgbif-3.8.2/rgbif/tests/fixtures/name_parse.yml |only rgbif-3.8.3/rgbif/DESCRIPTION | 8 rgbif-3.8.3/rgbif/MD5 | 492 rgbif-3.8.3/rgbif/NAMESPACE | 13 rgbif-3.8.3/rgbif/NEWS.md | 12 rgbif-3.8.3/rgbif/R/collection_search.R |only rgbif-3.8.3/rgbif/R/dataset.R | 4 rgbif-3.8.3/rgbif/R/dataset_doi.R | 5 rgbif-3.8.3/rgbif/R/dataset_list_funs.R | 4 rgbif-3.8.3/rgbif/R/dataset_search.r | 22 rgbif-3.8.3/rgbif/R/dataset_suggest.r | 2 rgbif-3.8.3/rgbif/R/dataset_uuid_funs.R | 22 rgbif-3.8.3/rgbif/R/datasets.r | 2 rgbif-3.8.3/rgbif/R/derived_dataset.R | 4 rgbif-3.8.3/rgbif/R/elevation.r | 2 rgbif-3.8.3/rgbif/R/enumeration.R | 70 rgbif-3.8.3/rgbif/R/gbif_geocode.R | 6 rgbif-3.8.3/rgbif/R/installation_search.R |only rgbif-3.8.3/rgbif/R/installation_uuid_funs.R |only rgbif-3.8.3/rgbif/R/installations.r | 144 rgbif-3.8.3/rgbif/R/institution_search.R |only rgbif-3.8.3/rgbif/R/lit_search.R | 106 rgbif-3.8.3/rgbif/R/name_backbone.r | 4 rgbif-3.8.3/rgbif/R/name_backbone_checklist.R | 4 rgbif-3.8.3/rgbif/R/name_lookup.r | 2 rgbif-3.8.3/rgbif/R/name_parse.R | 2 rgbif-3.8.3/rgbif/R/name_suggest.r | 3 rgbif-3.8.3/rgbif/R/name_usage.r | 5 rgbif-3.8.3/rgbif/R/network.R | 2 rgbif-3.8.3/rgbif/R/networks.r | 2 rgbif-3.8.3/rgbif/R/nodes.r | 194 rgbif-3.8.3/rgbif/R/occ_count.r | 6 rgbif-3.8.3/rgbif/R/occ_count_.R | 2 rgbif-3.8.3/rgbif/R/occ_download.R | 7 rgbif-3.8.3/rgbif/R/occ_download_cached.R | 2 rgbif-3.8.3/rgbif/R/occ_download_cancel.R | 116 rgbif-3.8.3/rgbif/R/occ_download_dataset_activity.R | 94 rgbif-3.8.3/rgbif/R/occ_download_datasets.R | 82 rgbif-3.8.3/rgbif/R/occ_download_describe.R | 6 rgbif-3.8.3/rgbif/R/occ_download_doi.R | 7 rgbif-3.8.3/rgbif/R/occ_download_list.R | 116 rgbif-3.8.3/rgbif/R/occ_download_meta.R | 4 rgbif-3.8.3/rgbif/R/occ_download_sql.R | 4 rgbif-3.8.3/rgbif/R/occ_facet.R | 7 rgbif-3.8.3/rgbif/R/occ_get.r | 11 rgbif-3.8.3/rgbif/R/occ_metadata.r | 112 rgbif-3.8.3/rgbif/R/organizations.r | 7 rgbif-3.8.3/rgbif/R/print_gbif.R | 232 rgbif-3.8.3/rgbif/R/zzz.r | 65 rgbif-3.8.3/rgbif/man/collection_search.Rd |only rgbif-3.8.3/rgbif/man/dataset.Rd | 2 rgbif-3.8.3/rgbif/man/dataset_doi.Rd | 7 rgbif-3.8.3/rgbif/man/dataset_list_funs.Rd | 4 rgbif-3.8.3/rgbif/man/dataset_search.Rd | 14 rgbif-3.8.3/rgbif/man/dataset_uuid_funs.Rd | 37 rgbif-3.8.3/rgbif/man/datasets.Rd | 2 rgbif-3.8.3/rgbif/man/derived_dataset.Rd | 4 rgbif-3.8.3/rgbif/man/elevation.Rd | 2 rgbif-3.8.3/rgbif/man/enumeration.Rd | 4 rgbif-3.8.3/rgbif/man/gbif_geocode.Rd | 8 rgbif-3.8.3/rgbif/man/installation_search.Rd |only rgbif-3.8.3/rgbif/man/installation_uuid_funs.Rd |only rgbif-3.8.3/rgbif/man/installations.Rd | 2 rgbif-3.8.3/rgbif/man/institution_search.Rd |only rgbif-3.8.3/rgbif/man/lit_search.Rd | 31 rgbif-3.8.3/rgbif/man/name_backbone.Rd | 4 rgbif-3.8.3/rgbif/man/name_backbone_checklist.Rd | 2 rgbif-3.8.3/rgbif/man/name_lookup.Rd | 2 rgbif-3.8.3/rgbif/man/name_parse.Rd | 2 rgbif-3.8.3/rgbif/man/name_suggest.Rd | 2 rgbif-3.8.3/rgbif/man/name_usage.Rd | 2 rgbif-3.8.3/rgbif/man/network.Rd | 2 rgbif-3.8.3/rgbif/man/networks.Rd | 2 rgbif-3.8.3/rgbif/man/nodes.Rd | 2 rgbif-3.8.3/rgbif/man/occ_count.Rd | 2 rgbif-3.8.3/rgbif/man/occ_count_.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download.Rd | 4 rgbif-3.8.3/rgbif/man/occ_download_cached.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_cancel.Rd | 9 rgbif-3.8.3/rgbif/man/occ_download_dataset_activity.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_datasets.Rd | 7 rgbif-3.8.3/rgbif/man/occ_download_describe.Rd | 5 rgbif-3.8.3/rgbif/man/occ_download_doi.Rd | 4 rgbif-3.8.3/rgbif/man/occ_download_list.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_meta.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_sql.Rd | 4 rgbif-3.8.3/rgbif/man/occ_facet.Rd | 2 rgbif-3.8.3/rgbif/man/occ_get.Rd | 4 rgbif-3.8.3/rgbif/man/occ_metadata.Rd | 2 rgbif-3.8.3/rgbif/man/organizations.Rd | 5 rgbif-3.8.3/rgbif/tests/fixtures/collection_search.yml |only rgbif-3.8.3/rgbif/tests/fixtures/dataset.yml | 1838 rgbif-3.8.3/rgbif/tests/fixtures/dataset_doi.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/dataset_list_funs.yml | 45 rgbif-3.8.3/rgbif/tests/fixtures/dataset_search.yml | 9738 rgbif-3.8.3/rgbif/tests/fixtures/dataset_search_facet.yml | 121 rgbif-3.8.3/rgbif/tests/fixtures/dataset_suggest.yml | 7363 rgbif-3.8.3/rgbif/tests/fixtures/dataset_suggest_description.yml | 2927 rgbif-3.8.3/rgbif/tests/fixtures/dataset_uuid_funs.yml |122958 +++++++++- rgbif-3.8.3/rgbif/tests/fixtures/derived_dataset_1.yml | 25 rgbif-3.8.3/rgbif/tests/fixtures/derived_dataset_2.yml | 23 rgbif-3.8.3/rgbif/tests/fixtures/elevation.yml | 61 rgbif-3.8.3/rgbif/tests/fixtures/elevation_geonames_conn.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/elevation_geonames_conn_unauthorized.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/elevation_models.yml | 161 rgbif-3.8.3/rgbif/tests/fixtures/elevation_unauthorized.yml | 24 rgbif-3.8.3/rgbif/tests/fixtures/elevation_warning_zero_zero.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/enumeration.yml | 888 rgbif-3.8.3/rgbif/tests/fixtures/enumeration_fails_well.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/gbif_citation_downloadkey.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/gbif_citation_occ_download_meta.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/gbif_get_wait.yml |only rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_get_records.yml | 103 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_identify.yml | 68 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_identifiers.yml | 22 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_metadataformats.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_sets.yml | 2054 rgbif-3.8.3/rgbif/tests/fixtures/installation_search.yml |only rgbif-3.8.3/rgbif/tests/fixtures/installation_uuid_funs.yml |only rgbif-3.8.3/rgbif/tests/fixtures/installations.yml | 2675 rgbif-3.8.3/rgbif/tests/fixtures/installations_deleted.yml | 59 rgbif-3.8.3/rgbif/tests/fixtures/installations_uuid.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/installations_uuid_data.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/institution_search.yml |only rgbif-3.8.3/rgbif/tests/fixtures/map_fetch_png.yml | 5631 rgbif-3.8.3/rgbif/tests/fixtures/map_fetch_terra.yml |17593 - rgbif-3.8.3/rgbif/tests/fixtures/name_backbone.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/name_backbone_verbose_true.yml | 183 rgbif-3.8.3/rgbif/tests/fixtures/name_issues.yml | 168 rgbif-3.8.3/rgbif/tests/fixtures/name_lookup_constituentKey.yml | 3774 rgbif-3.8.3/rgbif/tests/fixtures/name_lookup_habitat.yml |10713 rgbif-3.8.3/rgbif/tests/fixtures/name_lookup_no_results.yml | 25 rgbif-3.8.3/rgbif/tests/fixtures/name_suggest.yml | 1905 rgbif-3.8.3/rgbif/tests/fixtures/name_suggest_many_args.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/name_usage.yml | 285 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_children.yml | 558 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_descriptions.yml | 283 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_distributions.yml | 1043 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_iucnRedListCategory.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_media.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_name.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_parents.yml | 270 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_references.yml | 487 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_related.yml | 1900 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_speciesProfiles.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_synonyms.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_typeSpecimens.yml | 37 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_data_vernacularNames.yml | 363 rgbif-3.8.3/rgbif/tests/fixtures/name_usage_fails_well.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/network.yml | 44 rgbif-3.8.3/rgbif/tests/fixtures/network_constituents.yml |10327 rgbif-3.8.3/rgbif/tests/fixtures/nodes.yml | 4457 rgbif-3.8.3/rgbif/tests/fixtures/occ_count.yml | 159 rgbif-3.8.3/rgbif/tests/fixtures/occ_count_.yml | 175 rgbif-3.8.3/rgbif/tests/fixtures/occ_count_facet.yml | 196 rgbif-3.8.3/rgbif/tests/fixtures/occ_count_legacy_params.yml | 105 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_args_with_many_inputs.yml | 2389 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_catalog_number.yml | 504 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_coordinateUncertaintyInMeters.yml | 678 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_degreeOfEstablishment.yml | 1008 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_depth.yml | 201 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_distanceFromCentroidInMeters.yml | 720 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_dropped_fields.yml | 335 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_elevation.yml | 210 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_eventId.yml | 1386 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_fails_well.yml | 41 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_gadmGid.yml | 699 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_identifiedBy.yml | 1483 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_isInCluster.yml | 717 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_iucnRedListCategory.yml | 1251 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_key_gbifid_character_class.yml | 332 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_lifeStage.yml | 1074 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_networkKey.yml | 1159 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_occurrenceId.yml | 942 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_occurrencestatus.yml | 628 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_organismQuantity.yml | 638 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_organismQuantityType.yml | 367 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_relativeOrganismQuantity.yml | 742 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_scientificname.yml | 1542 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_speciesKey.yml | 1247 rgbif-3.8.3/rgbif/tests/fixtures/occ_data_verbatimScientificName.yml | 1235 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_1.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_2.yml | 45 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_3.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_4.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_5.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_6.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_7.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_8.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_cancel.yml | 23 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_cancel_prep.yml | 43 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_dataset_activity.yml | 61 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_dataset_activity_error.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_datasets.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_datasets_error.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_describe.yml | 85 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_doi.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_list.yml | 82 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_list_unauthorized.yml | 23 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_meta.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_meta_na_results.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_meta_with_results.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_queue.yml | 1134 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_sql_1.yml | 69 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_wait_character.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/occ_download_wait_request.yml | 1577 rgbif-3.8.3/rgbif/tests/fixtures/occ_get.yml | 875 rgbif-3.8.3/rgbif/tests/fixtures/occ_get_other.yml | 458 rgbif-3.8.3/rgbif/tests/fixtures/occ_metadata.yml | 143 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_catalognumber.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_coordinateUncertaintyInMeters.yml | 678 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_degreeOfEstablishment.yml | 1008 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_depth.yml | 223 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_distanceFromCentroidInMeters.yml | 721 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_elevation.yml | 572 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_eventId.yml | 1386 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_fails_well.yml | 41 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_gadmGid.yml | 699 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_geoDistance.yml | 256 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_hierarchy_data.yml | 245 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_identifiedBy.yml | 1483 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_isInCluster.yml | 717 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_iucnRedListCategory.yml | 1251 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_key_gbifid_character_class.yml | 332 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_lifeStage.yml | 1076 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_many_inputs.yml | 2389 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_networkKey.yml | 1159 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_occurrenceId.yml | 942 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_occurrencestatus.yml | 628 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_organismQuantity.yml | 638 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_organismQuantityType.yml | 367 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_relativeOrganismQuantity.yml | 742 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_scientificname.yml | 1542 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_speciesKey.yml | 1232 rgbif-3.8.3/rgbif/tests/fixtures/occ_search_verbatimScientificName.yml | 1235 rgbif-3.8.3/rgbif/tests/fixtures/organizations_search_country.yml | 106 rgbif-3.8.3/rgbif/tests/fixtures/organizations_search_uuid.yml |12891 - rgbif-3.8.3/rgbif/tests/fixtures/wkt_large_occ_data.yml | 5648 rgbif-3.8.3/rgbif/tests/fixtures/wkt_large_occ_search.yml | 5648 rgbif-3.8.3/rgbif/tests/test-all.R | 5 rgbif-3.8.3/rgbif/tests/testthat/test-collection_search.R |only rgbif-3.8.3/rgbif/tests/testthat/test-dataset_search.r | 11 rgbif-3.8.3/rgbif/tests/testthat/test-gbif_photos.R | 60 rgbif-3.8.3/rgbif/tests/testthat/test-installation_search.R |only rgbif-3.8.3/rgbif/tests/testthat/test-installation_uuid_funs.R |only rgbif-3.8.3/rgbif/tests/testthat/test-institution_search.R |only rgbif-3.8.3/rgbif/tests/testthat/test-lit_search.R | 35 rgbif-3.8.3/rgbif/tests/testthat/test-name_backbone_checklist.R | 190 rgbif-3.8.3/rgbif/tests/testthat/test-name_parse.R | 14 rgbif-3.8.3/rgbif/tests/testthat/test-occ_data.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download.R | 9 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_meta.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_queue.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_sql.R | 1 rgbif-3.8.3/rgbif/tests/testthat/test-occ_search.r | 2 rgbif-3.8.3/rgbif/tests/testthat/test-utils.R | 18 256 files changed, 184446 insertions(+), 102985 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Ben Wilson [aut, cre],
Matei Zaharia [aut],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Ben Wilson <benjamin.wilson@databricks.com>
Diff between mlflow versions 3.2.0 dated 2025-08-21 and 3.3.2 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- README.md | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Facilitate Citation of R Packages
Description: Facilitates the citation of R packages used in analysis
projects. Scans project for packages used, gets their citations, and
produces a document with citations in the preferred bibliography
format, ready to be pasted into reports or manuscripts. Alternatively,
'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
Author: Francisco Rodriguez-Sanchez [aut, cre, cph] ,
Connor P. Jackson [aut] ,
Shaurita D. Hutchins [ctb],
James M. Clawson [ctb]
Maintainer: Francisco Rodriguez-Sanchez <f.rodriguez.sanc@gmail.com>
Diff between grateful versions 0.2.12 dated 2025-04-30 and 0.3.0 dated 2025-09-04
DESCRIPTION | 17 +- MD5 | 51 ++++---- NEWS.md | 13 ++ R/cite_packages.R | 65 +++++++++- R/create_rmd.R | 8 + R/get_citations.R | 20 ++- R/get_pkgs_info.R | 14 ++ R/render_citations.R | 3 R/scan_packages.R | 123 ++++++++++++++++++- R/utils_citations.R | 28 ++++ R/write_citation_paragraph.R | 76 +++++++----- README.md | 133 ++++++++++++++++----- inst/CITATION | 2 man/cite_packages.Rd | 55 +++++++- man/figures/logo.png |only man/get_citations.Rd | 9 + man/get_pkgs_info.Rd | 27 +++- man/grateful-package.Rd | 2 man/scan_packages.Rd | 27 +++- tests/testthat/test-cite_packages.R | 57 ++++++++- tests/testthat/test-create_rmd.R | 4 tests/testthat/test-get_citations.R | 14 ++ tests/testthat/test-get_csl.R | 2 tests/testthat/test-get_pkgs_info.R | 10 + tests/testthat/test-render_citations.R | 14 +- tests/testthat/test-scan_packages.R | 207 ++++++++++++++++++++++++++++----- tests/testthat/test-utils_citations.R | 25 +++ 27 files changed, 829 insertions(+), 177 deletions(-)
Title: 'R' Bindings for the 'Boost' Math Functions
Description: 'R' bindings for the various functions and statistical distributions
provided by the 'Boost' Math library <https://www.boost.org/doc/libs/latest/libs/math/doc/html/index.html>.
Author: Andrew R. Johnson [aut, cre]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between boostmath versions 1.0.2 dated 2025-07-31 and 1.1.0 dated 2025-09-04
boostmath-1.0.2/boostmath/src/boostmath/complex_interop.hpp |only boostmath-1.0.2/boostmath/vignettes/boost-math.html |only boostmath-1.1.0/boostmath/DESCRIPTION | 6 boostmath-1.1.0/boostmath/MD5 | 125 +++- boostmath-1.1.0/boostmath/NAMESPACE | 52 + boostmath-1.1.0/boostmath/NEWS.md | 3 boostmath-1.1.0/boostmath/R/anderson_darling_test.R |only boostmath-1.1.0/boostmath/R/bivariate_statistics.R |only boostmath-1.1.0/boostmath/R/chatterjee_correlation.R |only boostmath-1.1.0/boostmath/R/constants.R |only boostmath-1.1.0/boostmath/R/interpolators.R |only boostmath-1.1.0/boostmath/R/linear_regression.R |only boostmath-1.1.0/boostmath/R/ljung_box_test.R |only boostmath-1.1.0/boostmath/R/quadrature_and_differentiation.R | 2 boostmath-1.1.0/boostmath/R/runs_tests.R |only boostmath-1.1.0/boostmath/R/signal_statistics.R |only boostmath-1.1.0/boostmath/R/t_tests.R |only boostmath-1.1.0/boostmath/R/univariate_statistics.R |only boostmath-1.1.0/boostmath/R/z_tests.R |only boostmath-1.1.0/boostmath/R/zzz.R | 4 boostmath-1.1.0/boostmath/build/vignette.rds |binary boostmath-1.1.0/boostmath/inst/doc/constants.R |only boostmath-1.1.0/boostmath/inst/doc/constants.Rmd |only boostmath-1.1.0/boostmath/inst/doc/constants.html |only boostmath-1.1.0/boostmath/inst/doc/interpolation.R |only boostmath-1.1.0/boostmath/inst/doc/interpolation.Rmd |only boostmath-1.1.0/boostmath/inst/doc/interpolation.html |only boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.R | 4 boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.Rmd | 4 boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.html | 12 boostmath-1.1.0/boostmath/inst/doc/statistics.R |only boostmath-1.1.0/boostmath/inst/doc/statistics.Rmd |only boostmath-1.1.0/boostmath/inst/doc/statistics.html |only boostmath-1.1.0/boostmath/inst/doc/vector-functionals.R | 44 - boostmath-1.1.0/boostmath/inst/doc/vector-functionals.Rmd | 44 - boostmath-1.1.0/boostmath/inst/doc/vector-functionals.html | 55 +- boostmath-1.1.0/boostmath/inst/tinytest/test_constants.R |only boostmath-1.1.0/boostmath/man/anderson_darling_test.Rd |only boostmath-1.1.0/boostmath/man/barycentric_rational.Rd |only boostmath-1.1.0/boostmath/man/bezier_polynomial.Rd |only boostmath-1.1.0/boostmath/man/bilinear_uniform.Rd |only boostmath-1.1.0/boostmath/man/bivariate_statistics.Rd |only boostmath-1.1.0/boostmath/man/cardinal_cubic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_cubic_hermite.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quadratic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quintic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quintic_hermite.Rd |only boostmath-1.1.0/boostmath/man/catmull_rom.Rd |only boostmath-1.1.0/boostmath/man/chatterjee_correlation.Rd |only boostmath-1.1.0/boostmath/man/constants.Rd |only boostmath-1.1.0/boostmath/man/cubic_hermite.Rd |only boostmath-1.1.0/boostmath/man/linear_regression.Rd |only boostmath-1.1.0/boostmath/man/ljung_box_test.Rd |only boostmath-1.1.0/boostmath/man/makima.Rd |only boostmath-1.1.0/boostmath/man/ooura_fourier_integrals.Rd | 2 boostmath-1.1.0/boostmath/man/pchip.Rd |only boostmath-1.1.0/boostmath/man/quintic_hermite.Rd |only boostmath-1.1.0/boostmath/man/runs_tests.Rd |only boostmath-1.1.0/boostmath/man/signal_statistics.Rd |only boostmath-1.1.0/boostmath/man/t_tests.Rd |only boostmath-1.1.0/boostmath/man/univariate_statistics.Rd |only boostmath-1.1.0/boostmath/man/z_tests.Rd |only boostmath-1.1.0/boostmath/src/Makevars | 26 boostmath-1.1.0/boostmath/src/boostmath/macros.hpp | 56 ++ boostmath-1.1.0/boostmath/src/boostmath/sexp.hpp |only boostmath-1.1.0/boostmath/src/constants.cpp |only boostmath-1.1.0/boostmath/src/cyl_hankel_1.cpp | 2 boostmath-1.1.0/boostmath/src/cyl_hankel_2.cpp | 2 boostmath-1.1.0/boostmath/src/init.cpp | 272 ++++++++++ boostmath-1.1.0/boostmath/src/interpolators |only boostmath-1.1.0/boostmath/src/interpolators.cpp |only boostmath-1.1.0/boostmath/src/quadrature_and_differentiation/fourier_integrals.cpp | 8 boostmath-1.1.0/boostmath/src/quadrature_and_differentiation/numerical_differentiation.cpp | 2 boostmath-1.1.0/boostmath/src/sph_hankel_1.cpp | 2 boostmath-1.1.0/boostmath/src/sph_hankel_2.cpp | 2 boostmath-1.1.0/boostmath/src/statistics |only boostmath-1.1.0/boostmath/src/statistics.cpp |only boostmath-1.1.0/boostmath/vignettes/constants.Rmd |only boostmath-1.1.0/boostmath/vignettes/interpolation.Rmd |only boostmath-1.1.0/boostmath/vignettes/quadrature-differentiation.Rmd | 4 boostmath-1.1.0/boostmath/vignettes/statistics.Rmd |only boostmath-1.1.0/boostmath/vignettes/vector-functionals.Rmd | 44 - 82 files changed, 635 insertions(+), 142 deletions(-)
Title: Bias Correction via Iterative Bootstrap
Description: An implementation of the iterative bootstrap procedure of
Kuk (1995) <doi:10.1111/j.2517-6161.1995.tb02035.x> to correct the estimation bias of a fitted model object. This
procedure has better bias correction properties than the
bootstrap bias correction technique.
Author: Samuel Orso [aut, cre],
Stephane Guerrier [ctb],
Yuming Zhang [ctb]
Maintainer: Samuel Orso <Samuel.Orso@unige.ch>
Diff between ib versions 0.2.0 dated 2022-04-04 and 0.2.1 dated 2025-09-04
DESCRIPTION | 11 - MD5 | 52 ++++---- NAMESPACE | 8 + NEWS.md | 5 R/AllClass.R | 243 +++++++++++++++++++++----------------- R/AllGeneric.R | 1 R/ib_betareg.R | 4 R/ib_glm.R | 8 - R/ib_glmer.R |only R/ib_lm.R | 4 R/ib_lmer.R | 4 R/ib_nls.R | 4 R/ib_vglm.R | 4 R/summary.R | 23 +++ build/partial.rdb |binary inst/examples/eg_glmer.R |only inst/examples/eg_lmer.R | 2 man/Ib-class.Rd | 50 +++---- man/SummaryIb-class.Rd | 42 ++---- man/ib.Rd | 27 +++- man/simulation-betareg-method.Rd | 4 man/simulation-glm-method.Rd | 4 man/simulation-glmerMod-method.Rd |only man/simulation-lm-method.Rd | 4 man/simulation-lmerMod-method.Rd | 4 man/simulation-negbin-method.Rd | 4 man/simulation-nls-method.Rd | 4 man/simulation-vglm-method.Rd | 4 man/summary-IbGlmer-method.Rd |only 29 files changed, 303 insertions(+), 217 deletions(-)
Title: Create Custom 'Bootstrap' Themes to Use in 'Shiny'
Description: Customize 'Bootstrap' and 'Bootswatch' themes, like colors, fonts, grid layout,
to use in 'Shiny' applications, 'rmarkdown' documents and 'flexdashboard'.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Thomas Park [ctb, cph] ,
Mark Otto [ctb] ,
Jacob Thornton [ctb] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
onkbear [ctb, cph] ,
Colorlib [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between fresh versions 0.2.1 dated 2024-06-26 and 0.2.2 dated 2025-09-04
fresh-0.2.1/fresh/build/fresh.pdf |only fresh-0.2.2/fresh/DESCRIPTION | 8 fresh-0.2.2/fresh/MD5 | 45 fresh-0.2.2/fresh/NEWS.md | 45 fresh-0.2.2/fresh/R/bs_theme_nord.R | 118 fresh-0.2.2/fresh/R/fresh-package.R | 14 fresh-0.2.2/fresh/R/utils.R | 110 fresh-0.2.2/fresh/R/vars-bootstrap.R | 1402 ++++---- fresh-0.2.2/fresh/build/stage23.rdb |binary fresh-0.2.2/fresh/build/vignette.rds |binary fresh-0.2.2/fresh/inst/assets/AdminLTE-3.1.0/_info-box.scss | 306 - fresh-0.2.2/fresh/inst/assets/AdminLTE-3.1.0/_variables.scss | 474 +- fresh-0.2.2/fresh/inst/doc/fresh.R | 116 fresh-0.2.2/fresh/inst/doc/fresh.Rmd | 308 - fresh-0.2.2/fresh/inst/doc/fresh.html | 956 ++--- fresh-0.2.2/fresh/inst/doc/vars-bs4dash.R | 144 fresh-0.2.2/fresh/inst/doc/vars-bs4dash.html | 952 ++--- fresh-0.2.2/fresh/inst/doc/vars-shiny.R | 524 +-- fresh-0.2.2/fresh/inst/doc/vars-shiny.html | 1766 +++++------ fresh-0.2.2/fresh/inst/doc/vars-shinydashboard.R | 194 - fresh-0.2.2/fresh/inst/doc/vars-shinydashboard.html | 976 +++--- fresh-0.2.2/fresh/inst/examples/bs4Dash/app.R | 458 +- fresh-0.2.2/fresh/inst/examples/bs4Dash/dark-mode.R | 526 +-- fresh-0.2.2/fresh/vignettes/fresh.Rmd | 308 - 24 files changed, 4877 insertions(+), 4873 deletions(-)
Title: UNHCR 'ggplot2' Theme and Colour Palettes
Description: A 'ggplot2' theme and color palettes following
the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.
Author: Cedric Vidonne [aut, cre],
Ahmadou Dicko [aut],
UNHCR [cph]
Maintainer: Cedric Vidonne <cedric@vidonne.me>
Diff between unhcrthemes versions 0.7.0 dated 2025-06-27 and 0.7.1 dated 2025-09-04
unhcrthemes-0.7.0/unhcrthemes/man/lato_registered.Rd |only unhcrthemes-0.7.1/unhcrthemes/DESCRIPTION | 9 ++-- unhcrthemes-0.7.1/unhcrthemes/MD5 | 9 ++-- unhcrthemes-0.7.1/unhcrthemes/NAMESPACE | 3 - unhcrthemes-0.7.1/unhcrthemes/NEWS.md | 13 ++++++ unhcrthemes-0.7.1/unhcrthemes/R/lato.R | 37 +------------------ 6 files changed, 23 insertions(+), 48 deletions(-)
Title: Freshing Up your 'ggplot2' Plots
Description: Functions for working with legends and axis lines of 'ggplot2',
facets that repeat axis lines on all panels, and some 'knitr' extensions.
Author: Stefan McKinnon Edwards [aut, ctb, cre] ,
Baptiste Auguie [ctb] ,
Shaun Jackman [ctb] ,
Hadley Wickham [ctb] ,
Winston Chang [ctb]
Maintainer: Stefan McKinnon Edwards <sme@iysik.com>
Diff between lemon versions 0.5.1 dated 2025-07-22 and 0.5.2 dated 2025-09-04
DESCRIPTION | 6 MD5 | 44 +++---- R/axis-annotation.r | 4 R/legends.r | 15 +- R/lemon-plot.r | 2 inst/doc/capped-axes.html | 30 ++-- inst/doc/facet-rep-labels.R | 10 - inst/doc/facet-rep-labels.html | 12 - inst/doc/geoms.html | 8 - inst/doc/gtable_show_lemonade.R | 2 inst/doc/gtable_show_lemonade.html | 20 +-- inst/doc/legends.R | 3 inst/doc/legends.Rmd | 6 inst/doc/legends.html | 220 +++++++++++++++++------------------ inst/doc/lemon_print.html | 4 man/lemon-ggproto.Rd | 4 man/lemon_plot.Rd | 2 man/reposition_legend.Rd | 5 tests/testthat/test_facet.R | 32 +++-- tests/testthat/test_facet_aux.R | 10 + tests/testthat/test_geom-pointline.r | 65 +++++++--- tests/testthat/test_lemon_plot.r | 7 - vignettes/legends.Rmd | 6 23 files changed, 284 insertions(+), 233 deletions(-)
Title: R Toolkit for 'Databricks'
Description: Collection of utilities that improve using 'Databricks' from R.
Primarily functions that wrap specific 'Databricks' APIs
(<https://docs.databricks.com/api>), 'RStudio' connection pane support, quality
of life functions to make 'Databricks' simpler to use.
Author: Zac Davies [aut, cre],
Rafi Kurlansik [aut],
Databricks [cph, fnd]
Maintainer: Zac Davies <zac@databricks.com>
Diff between brickster versions 0.2.8.1 dated 2025-07-20 and 0.2.9 dated 2025-09-04
brickster-0.2.8.1/brickster/R/dbi-backend.R |only brickster-0.2.9/brickster/DESCRIPTION | 11 brickster-0.2.9/brickster/MD5 | 176 ++-- brickster-0.2.9/brickster/NAMESPACE | 69 + brickster-0.2.9/brickster/NEWS.md | 70 - brickster-0.2.9/brickster/R/clusters.R | 16 brickster-0.2.9/brickster/R/data-structures.R | 8 brickster-0.2.9/brickster/R/databricks-dbi.R |only brickster-0.2.9/brickster/R/databricks-dbplyr.R |only brickster-0.2.9/brickster/R/execution-context.R | 16 brickster-0.2.9/brickster/R/jobs.R | 149 ++- brickster-0.2.9/brickster/R/remote-repl.R | 17 brickster-0.2.9/brickster/R/sql-query-execution.R | 348 ++++++- brickster-0.2.9/brickster/R/volume-fs.R | 313 +++++-- brickster-0.2.9/brickster/README.md | 103 ++ brickster-0.2.9/brickster/build/vignette.rds |binary brickster-0.2.9/brickster/inst/doc/cluster-management.R | 138 +-- brickster-0.2.9/brickster/inst/doc/cluster-management.html | 5 brickster-0.2.9/brickster/inst/doc/managing-jobs.R | 440 +++++----- brickster-0.2.9/brickster/inst/doc/managing-jobs.html | 5 brickster-0.2.9/brickster/inst/doc/remote-repl.R | 4 brickster-0.2.9/brickster/inst/doc/remote-repl.html | 5 brickster-0.2.9/brickster/inst/doc/setup-auth.R | 58 - brickster-0.2.9/brickster/inst/doc/setup-auth.html | 5 brickster-0.2.9/brickster/inst/doc/sql-backend.R |only brickster-0.2.9/brickster/inst/doc/sql-backend.Rmd |only brickster-0.2.9/brickster/inst/doc/sql-backend.html |only brickster-0.2.9/brickster/man/DatabricksConnection-class.Rd |only brickster-0.2.9/brickster/man/DatabricksDriver-class.Rd |only brickster-0.2.9/brickster/man/DatabricksResult-class.Rd |only brickster-0.2.9/brickster/man/DatabricksSQL.Rd |only brickster-0.2.9/brickster/man/copy_to.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/databricks-dbi.Rd |only brickster-0.2.9/brickster/man/databricks-dbplyr.Rd |only brickster-0.2.9/brickster/man/dbAppendTable-DatabricksConnection-Id-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbAppendTable-DatabricksConnection-character-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbBegin-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbClearResult-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbColumnInfo-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbCommit-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbConnect-DatabricksDriver-method.Rd |only brickster-0.2.9/brickster/man/dbDataType-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbDisconnect-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbExecute-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-AsIs-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-Id-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbFetch-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetInfo-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbGetQuery-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbGetRowCount-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetRowsAffected-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetStatement-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbHasCompleted-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbIsValid-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbListFields-DatabricksConnection-AsIs-method.Rd |only brickster-0.2.9/brickster/man/dbListFields-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbListTables-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-Id-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-SQL-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbRollback-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbSendQuery-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbSendStatement-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-AsIs-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-Id-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-character-data.frame-method.Rd |only brickster-0.2.9/brickster/man/db_append_with_select_values.Rd |only brickster-0.2.9/brickster/man/db_collect.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/db_create_table_as_select_values.Rd |only brickster-0.2.9/brickster/man/db_create_table_from_data.Rd |only brickster-0.2.9/brickster/man/db_generate_typed_values_sql.Rd |only brickster-0.2.9/brickster/man/db_generate_typed_values_sql_for_view.Rd |only brickster-0.2.9/brickster/man/db_generate_values_sql.Rd |only brickster-0.2.9/brickster/man/db_jobs_create.Rd | 5 brickster-0.2.9/brickster/man/db_jobs_delete.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_get.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_list.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_repair_run.Rd |only brickster-0.2.9/brickster/man/db_jobs_reset.Rd | 5 brickster-0.2.9/brickster/man/db_jobs_run_now.Rd | 23 brickster-0.2.9/brickster/man/db_jobs_runs_cancel.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_delete.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_export.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_get.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_get_output.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_list.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_submit.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_update.Rd | 1 brickster-0.2.9/brickster/man/db_should_use_volume_method.Rd |only brickster-0.2.9/brickster/man/db_sql_create_empty_result.Rd |only brickster-0.2.9/brickster/man/db_sql_exec_and_wait.Rd |only brickster-0.2.9/brickster/man/db_sql_exec_poll_for_success.Rd | 14 brickster-0.2.9/brickster/man/db_sql_exec_query.Rd | 2 brickster-0.2.9/brickster/man/db_sql_fetch_results.Rd |only brickster-0.2.9/brickster/man/db_sql_process_inline.Rd |only brickster-0.2.9/brickster/man/db_sql_query.Rd | 8 brickster-0.2.9/brickster/man/db_sql_type_to_empty_vector.Rd |only brickster-0.2.9/brickster/man/db_volume_delete.Rd | 1 brickster-0.2.9/brickster/man/db_volume_dir_create.Rd | 1 brickster-0.2.9/brickster/man/db_volume_dir_delete.Rd | 7 brickster-0.2.9/brickster/man/db_volume_dir_exists.Rd | 1 brickster-0.2.9/brickster/man/db_volume_file_exists.Rd | 1 brickster-0.2.9/brickster/man/db_volume_list.Rd | 1 brickster-0.2.9/brickster/man/db_volume_read.Rd | 6 brickster-0.2.9/brickster/man/db_volume_recursive_delete_contents.Rd |only brickster-0.2.9/brickster/man/db_volume_upload_dir.Rd |only brickster-0.2.9/brickster/man/db_volume_write.Rd | 8 brickster-0.2.9/brickster/man/db_write_table_standard.Rd |only brickster-0.2.9/brickster/man/db_write_table_volume.Rd |only brickster-0.2.9/brickster/man/dbplyr_edition.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/generate_temp_name.Rd |only brickster-0.2.9/brickster/man/show-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/show-DatabricksDriver-method.Rd |only brickster-0.2.9/brickster/man/show-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/sql_query_fields.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_query_save.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_table_analyze.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_translation.DatabricksConnection.Rd |only brickster-0.2.9/brickster/tests/testthat/helper-skip.R | 48 + brickster-0.2.9/brickster/tests/testthat/test-databricks-dbi.R |only brickster-0.2.9/brickster/tests/testthat/test-databricks-dbplyr.R |only brickster-0.2.9/brickster/tests/testthat/test-jobs.R | 62 + brickster-0.2.9/brickster/tests/testthat/test-request-helpers.R | 7 brickster-0.2.9/brickster/tests/testthat/test-sql-execution.R | 72 + brickster-0.2.9/brickster/tests/testthat/test-volumes-fs.R | 46 + brickster-0.2.9/brickster/vignettes/sql-backend.Rmd |only 127 files changed, 1646 insertions(+), 639 deletions(-)
Title: Seamless Access to World Bank International Debt Statistics
(IDS)
Description: Access and analyze the World Bank's International Debt Statistics
(IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>.
IDS provides creditor-debtor relationships between countries, regions, and
institutions. 'wbids' enables users to download, process and work with IDS
series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre],
Teal Insights [cph],
Christoph Scheuch [aut] ,
Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>
Diff between wbids versions 1.0.0 dated 2025-02-08 and 1.1.0 dated 2025-09-04
wbids-1.0.0/wbids/R/ids_list_geographies.R |only wbids-1.0.0/wbids/man/geographies.Rd |only wbids-1.0.0/wbids/tests/testthat/test-ids_list_geographies.R |only wbids-1.1.0/wbids/DESCRIPTION | 17 wbids-1.1.0/wbids/MD5 | 61 +-- wbids-1.1.0/wbids/NAMESPACE | 2 wbids-1.1.0/wbids/NEWS.md | 4 wbids-1.1.0/wbids/R/global-variables.R | 6 wbids-1.1.0/wbids/R/ids_bulk.R | 59 +-- wbids-1.1.0/wbids/R/ids_bulk_files.R | 15 wbids-1.1.0/wbids/R/ids_bulk_series.R | 2 wbids-1.1.0/wbids/R/ids_get.R | 125 ++++-- wbids-1.1.0/wbids/R/ids_list_entities.R |only wbids-1.1.0/wbids/R/read_bulk_info.R | 3 wbids-1.1.0/wbids/R/sysdata.R | 6 wbids-1.1.0/wbids/R/sysdata.rda |binary wbids-1.1.0/wbids/R/wbids-package.R | 1 wbids-1.1.0/wbids/README.md | 68 +++ wbids-1.1.0/wbids/build/vignette.rds |binary wbids-1.1.0/wbids/data/sysdata.rda |binary wbids-1.1.0/wbids/inst/doc/data-model.R | 14 wbids-1.1.0/wbids/inst/doc/data-model.html | 52 +- wbids-1.1.0/wbids/inst/doc/data-model.qmd | 40 +- wbids-1.1.0/wbids/man/entities.Rd |only wbids-1.1.0/wbids/man/ids_bulk.Rd | 4 wbids-1.1.0/wbids/man/ids_get.Rd | 27 - wbids-1.1.0/wbids/man/ids_list_entities.Rd |only wbids-1.1.0/wbids/man/ids_list_geographies.Rd | 31 - wbids-1.1.0/wbids/man/series.Rd | 2 wbids-1.1.0/wbids/man/series_topics.Rd | 2 wbids-1.1.0/wbids/man/wbids-package.Rd | 2 wbids-1.1.0/wbids/tests/testthat/test-ids_bulk.R | 81 +++- wbids-1.1.0/wbids/tests/testthat/test-ids_get.R | 201 ++++++----- wbids-1.1.0/wbids/tests/testthat/test-ids_list_entities.R |only wbids-1.1.0/wbids/vignettes/data-model.qmd | 40 +- 35 files changed, 534 insertions(+), 331 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. and Contributors [aut, cph] ,
Benoit Thieurmel [aut, cre]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between visNetwork versions 2.1.2 dated 2022-09-29 and 2.1.4 dated 2025-09-04
DESCRIPTION | 9 MD5 | 214 +++++++------- NEWS | 8 R/dependencies.R | 8 R/visCollapse.R | 10 R/visConfigure.R | 4 R/visDocumentation.R | 8 R/visEdges.R | 83 ++--- R/visExport.R | 6 R/visFit.R | 12 R/visFocus.R | 12 R/visGetUtils.R | 124 ++++---- R/visGroups.R | 12 R/visHclust.R | 7 R/visHierarchicalLayout.R | 10 R/visIgraph.R | 16 - R/visIgraphLayout.R | 8 R/visInteraction.R | 23 - R/visLayout.R | 12 R/visLegend.R | 12 R/visMoveNode.R | 12 R/visNearestNodes.R | 14 R/visNetwork.R | 54 +-- R/visNetworkEditor.R | 16 - R/visNetworkEvents.R | 24 - R/visNetworkProxy.R | 40 +- R/visNodes.R | 114 +++---- R/visOptions.R | 74 ++-- R/visPhysics.R | 74 ++-- R/visRedraw.R | 12 R/visRemoveEdges.R | 10 R/visRemoveNodes.R | 10 R/visSave.R | 6 R/visSelectEdges.R | 10 R/visSelectNodes.R | 10 R/visSetData.R | 16 - R/visSetOptions.R | 2 R/visSetSelection.R | 10 R/visSetTitle.R | 28 - R/visStabilize.R | 38 +- R/visTree.R | 39 +- R/visTreeModule.R | 2 R/visUnselectAll.R | 12 R/visUpdateEdges.R | 26 - R/visUpdateNodes.R | 24 - build/vignette.rds |binary inst/doc/Introduction-to-visNetwork.R | 60 ++-- inst/doc/Introduction-to-visNetwork.html | 459 +++++++++++++++---------------- inst/shiny/src/server/options_server.R | 2 man/addExport.Rd | 4 man/addFontAwesome.Rd | 2 man/addIonicons.Rd | 2 man/visConfigure.Rd | 4 man/visDocumentation.Rd | 8 man/visEdges.Rd | 83 ++--- man/visEvents.Rd | 22 - man/visExport.Rd | 4 man/visFit.Rd | 12 man/visFocus.Rd | 12 man/visGetBoundingBox.Rd | 10 man/visGetConnectedEdges.Rd | 10 man/visGetConnectedNodes.Rd | 10 man/visGetEdges.Rd | 10 man/visGetNodes.Rd | 10 man/visGetPositions.Rd | 12 man/visGetScale.Rd | 10 man/visGetSelectedEdges.Rd | 10 man/visGetSelectedNodes.Rd | 10 man/visGetSelection.Rd | 10 man/visGetViewPosition.Rd | 10 man/visGroups.Rd | 12 man/visHclust.Rd | 18 - man/visHierarchicalLayout.Rd | 10 man/visIgraphLayout.Rd | 8 man/visInteraction.Rd | 23 - man/visLayout.Rd | 12 man/visLegend.Rd | 12 man/visMoveNode.Rd | 12 man/visNearestNodes.Rd | 10 man/visNetwork-collapse.Rd | 10 man/visNetwork-igraph.Rd | 14 man/visNetwork-shiny.Rd | 40 +- man/visNetwork-treeModule.Rd | 30 +- man/visNetwork.Rd | 52 +-- man/visNetworkEditor-module.Rd | 12 man/visNetworkEditor.Rd | 6 man/visNodes.Rd | 114 +++---- man/visOptions.Rd | 72 ++-- man/visPhysics.Rd | 74 ++-- man/visRedraw.Rd | 12 man/visRemoveEdges.Rd | 10 man/visRemoveNodes.Rd | 10 man/visSave.Rd | 4 man/visSelectEdges.Rd | 10 man/visSelectNodes.Rd | 10 man/visSetData.Rd | 16 - man/visSetOptions.Rd | 2 man/visSetSelection.Rd | 10 man/visSetTitle.Rd | 28 - man/visStabilize.Rd | 12 man/visStartSimulation.Rd | 12 man/visStopSimulation.Rd | 12 man/visStorePositions.Rd | 10 man/visTree.Rd | 38 +- man/visTreeEditor.Rd | 4 man/visUnselectAll.Rd | 12 man/visUpdateEdges.Rd | 26 - man/visUpdateNodes.Rd | 24 - 108 files changed, 1437 insertions(+), 1427 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gomez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.3-6 dated 2024-12-02 and 1.4-1 dated 2025-09-04
DESCRIPTION | 19 +-- MD5 | 59 +++++---- NAMESPACE | 3 NEWS.md | 14 ++ R/ML_models.R | 198 +++++++++------------------------ R/SLX_WX.R | 188 +++++++++++++++++++++---------- R/impacts.R | 10 + R/kpgm_new.R | 6 + R/s2sls.R | 4 R/sarlm_tests.R | 14 ++ R/spBreg.R | 222 ++++++++++++------------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SpatialFiltering.html | 2 inst/doc/nb_igraph.html | 8 - inst/doc/sids_models.R | 4 inst/doc/sids_models.Rmd | 4 inst/doc/sids_models.html | 9 - inst/tinytest/test_Durbin_factor.R |only inst/tinytest/test_TR_20_07_20.R | 102 ++++++++--------- man/ML_models.Rd | 4 man/SET_MCMC.Rd | 5 man/SLX.Rd | 8 + man/impacts.Rd | 34 +++-- man/sarlm_tests.Rd | 2 src/eminmaxC.c | 28 ++-- src/listw2Matrix.c | 4 src/ml_sse.c | 90 +++++++-------- src/mom_calc.c | 10 - src/spatialreg.h | 5 vignettes/sids_models.Rmd | 4 31 files changed, 517 insertions(+), 543 deletions(-)
Title: Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System)
Description: A legacy version of 'Ryacas', an interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Author: Mikkel Meyer Andersen [aut, cre, cph],
Rob Goedman [aut, cph],
Gabor Grothendieck [aut, cph],
Soeren Hoejsgaard [aut, cph],
Grzegorz Mazur [aut, cph],
Ayal Pinkus [aut, cph],
Nemanja Trifunovic [cph] )
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between Ryacas0 versions 0.4.4 dated 2023-01-12 and 0.4.5 dated 2025-09-04
DESCRIPTION | 9 MD5 | 40 +-- R/Sym2.R | 6 R/ryacas-package.R | 3 README.md | 4 build/vignette.rds |binary demo/Ryacas-gui.R | 2 inst/NEWS | 4 inst/doc/elaborate-reference.R | 2 inst/doc/elaborate-reference.html | 438 ++++++++++++++++++------------------ inst/doc/getting-started.R | 2 inst/doc/getting-started.html | 58 ++-- inst/doc/latent-variable-model.R | 6 inst/doc/latent-variable-model.html | 68 ++--- inst/doc/ssm-matrix.R | 6 inst/doc/ssm-matrix.html | 120 ++++----- inst/doc/sym-matrix-vector.R | 4 inst/doc/sym-matrix-vector.html | 72 ++--- man/Ryacas0-package.Rd | 28 ++ src/Makevars | 3 tests/testthat/test-simple.R | 48 +-- 21 files changed, 477 insertions(+), 446 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [ctb] ,
Christophe Croux [ctb] ,
Valentin Todorov [aut] ,
Andreas Ruckstuhl [aut] ,
Matias Salibian-Barrera [aut] ,
Tobias Verbeke [ctb, fnd] ,
Manuel Koller [aut] ,
Eduardo L. T. Conceicao [aut] ,
Maria A [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.99-4-1 dated 2024-09-27 and 0.99-6 dated 2025-09-04
DESCRIPTION | 15 ++++++++------- MD5 | 28 ++++++++++++++-------------- R/covMcd.R | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 19 +++++++++++++++++++ inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.R | 28 ++++++++++++++++++++++++---- inst/doc/lmrob_simulation.Rnw | 35 ++++++++++++++++++++++++++++++++--- inst/doc/lmrob_simulation.pdf |binary inst/doc/psi_functions.pdf |binary inst/xtraR/platform-sessionInfo.R | 5 +++-- tests/mc-strict.R | 2 +- tests/poisson-ex.R | 3 +-- vignettes/lmrob_simulation.Rnw | 35 ++++++++++++++++++++++++++++++++--- 15 files changed, 136 insertions(+), 38 deletions(-)
Title: Enterprise Streamlined 'shiny' Application Framework Using
'bs4Dash'
Description: A framework for building enterprise, scalable and UI-standardized 'shiny' applications.
It brings enhanced features such as 'bootstrap' v4 <https://getbootstrap.com/docs/4.0/getting-started/introduction/>,
additional and enhanced 'shiny' modules, customizable UI features, as well as an enhanced application file
organization paradigm. This update allows developers to harness the ability to build powerful applications and
enriches the 'shiny' developers' experience when building and maintaining applications.
Author: Mohammed Ali [aut, cre],
Constance Brett [ctb],
Aggregate Genius Inc [spn]
Maintainer: Mohammed Ali <mohammed@aggregate-genius.com>
Diff between periscope2 versions 0.2.4 dated 2025-04-14 and 0.3.0 dated 2025-09-04
DESCRIPTION | 14 MD5 | 201 +++++----- NAMESPACE | 2 NEWS.md | 13 R/downloadFile.R | 102 +++-- R/downloadablePlot.R | 26 - R/downloadableReactTable.R |only R/downloadableTable.R | 27 - R/logViewer.R | 33 + R/logger.R | 29 + R/ui_helpers.R | 2 README.md | 3 build/vignette.rds |binary inst/WORDLIST | 12 inst/doc/announcement-module.Rmd | 1 inst/doc/announcement-module.html | 6 inst/doc/announcement_addin.Rmd | 1 inst/doc/announcement_addin.html | 6 inst/doc/applicationReset-module.Rmd | 1 inst/doc/applicationReset-module.html | 6 inst/doc/downloadFile-module.Rmd | 4 inst/doc/downloadFile-module.html | 11 inst/doc/downloadablePlot-module.Rmd | 1 inst/doc/downloadablePlot-module.html | 6 inst/doc/downloadableReactTable-module.R |only inst/doc/downloadableReactTable-module.Rmd |only inst/doc/downloadableReactTable-module.html |only inst/doc/downloadableTable-module.Rmd | 1 inst/doc/downloadableTable-module.html | 6 inst/doc/logViewer-module.Rmd | 6 inst/doc/logViewer-module.html | 15 inst/doc/new-application.Rmd | 1 inst/doc/new-application.html | 6 inst/doc/themeBuilder_addin.Rmd | 1 inst/doc/themeBuilder_addin.html | 6 inst/fw_templ/p_example/custom.css | 33 + inst/fw_templ/p_example/custom.js | 25 + inst/fw_templ/p_example/global.R | 1 inst/fw_templ/p_example/plots.R | 6 inst/fw_templ/p_example/program_helpers.R | 1 inst/fw_templ/p_example/server_local.R | 37 + inst/fw_templ/p_example/ui_body.R | 50 ++ inst/fw_templ/p_example/ui_body_no_left_sidebar.R | 51 ++ inst/fw_templ/www/custom.css | 27 + inst/fw_templ/www/custom.js | 25 + man/downloadFile.Rd | 8 man/downloadFileButton.Rd | 2 man/downloadablePlot.Rd | 6 man/downloadablePlotUI.Rd | 6 man/downloadableReactTable.Rd |only man/downloadableReactTableUI.Rd |only man/logViewerOutput.Rd | 7 man/set_app_parameters.Rd | 2 tests/testthat/_snaps/download_file/download.csv |only tests/testthat/_snaps/download_file/download.tsv |only tests/testthat/_snaps/download_file/mydownload1.txt | 12 tests/testthat/_snaps/download_file/show_row_names_download.tsv |only tests/testthat/_snaps/download_file/show_row_names_download.txt |only tests/testthat/_snaps/log_viewer.md | 25 + tests/testthat/sample_app_both_sidebars/program/fxn/plots.R | 6 tests/testthat/sample_app_both_sidebars/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_both_sidebars/program/global.R | 1 tests/testthat/sample_app_both_sidebars/program/server_local.R | 37 + tests/testthat/sample_app_both_sidebars/program/ui_body.R | 50 ++ tests/testthat/sample_app_both_sidebars/www/css/custom.css | 27 + tests/testthat/sample_app_both_sidebars/www/js/custom.js | 25 + tests/testthat/sample_app_left_sidebar/program/fxn/plots.R | 6 tests/testthat/sample_app_left_sidebar/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_left_sidebar/program/global.R | 1 tests/testthat/sample_app_left_sidebar/program/server_local.R | 37 + tests/testthat/sample_app_left_sidebar/program/ui_body.R | 50 ++ tests/testthat/sample_app_left_sidebar/www/css/custom.css | 27 + tests/testthat/sample_app_left_sidebar/www/js/custom.js | 25 + tests/testthat/sample_app_no_both_sidebars/log/actions.log | 3 tests/testthat/sample_app_no_both_sidebars/log/actions.log.last | 3 tests/testthat/sample_app_no_both_sidebars/program/fxn/plots.R | 6 tests/testthat/sample_app_no_both_sidebars/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_no_both_sidebars/program/global.R | 1 tests/testthat/sample_app_no_both_sidebars/program/server_local.R | 37 + tests/testthat/sample_app_no_both_sidebars/program/ui_body.R | 51 ++ tests/testthat/sample_app_no_both_sidebars/www/css/custom.css | 27 + tests/testthat/sample_app_no_both_sidebars/www/js/custom.js | 25 + tests/testthat/sample_app_right_sidebar/program/fxn/plots.R | 6 tests/testthat/sample_app_right_sidebar/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_right_sidebar/program/global.R | 1 tests/testthat/sample_app_right_sidebar/program/server_local.R | 37 + tests/testthat/sample_app_right_sidebar/program/ui_body.R | 51 ++ tests/testthat/sample_app_right_sidebar/www/css/custom.css | 26 + tests/testthat/sample_app_right_sidebar/www/js/custom.js | 25 + tests/testthat/setup.R | 22 + tests/testthat/test_download_file.R | 184 +++++++-- tests/testthat/test_downloadable_plot.R | 8 tests/testthat/test_downloadable_react_table.R |only tests/testthat/test_downloadable_table.R | 86 ++-- tests/testthat/test_log_viewer.R | 21 - tests/testthat/test_logger.R | 125 +++++- tests/testthat/test_ui_functions.R | 94 ++-- vignettes/announcement-module.Rmd | 1 vignettes/announcement_addin.Rmd | 1 vignettes/applicationReset-module.Rmd | 1 vignettes/downloadFile-module.Rmd | 4 vignettes/downloadablePlot-module.Rmd | 1 vignettes/downloadableReactTable-module.Rmd |only vignettes/downloadableTable-module.Rmd | 1 vignettes/figures/downloadableReactTable-1.png |only vignettes/logViewer-module.Rmd | 6 vignettes/new-application.Rmd | 1 vignettes/themeBuilder_addin.Rmd | 1 108 files changed, 1638 insertions(+), 403 deletions(-)
Title: Interactive Parallel Categories Diagrams for 'easyalluvial'
Description: Complex graphical representations of data are best explored using interactive elements.
'parcats' adds interactive graphing capabilities to the 'easyalluvial' package.
The 'plotly.js' parallel categories diagrams offer a good framework for
creating interactive flow graphs that allow manual drag and drop sorting of dimensions
and categories, highlighting single flows and displaying mouse over information. The
'plotly.js' dependency is quite heavy and therefore is outsourced into a separate package.
Author: Bjoern Koneswarakantha [aut, cre]
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between parcats versions 0.0.5 dated 2023-12-10 and 0.1.0 dated 2025-09-04
DESCRIPTION | 14 ++++++------ MD5 | 10 ++++----- NEWS.md | 3 ++ R/parcats.R | 46 +++++++++++++++++++++--------------------- inst/WORDLIST | 2 - tests/testthat/test_parcats.R | 7 +++++- 6 files changed, 45 insertions(+), 37 deletions(-)
Title: Multivariate Difference Between Two Groups
Description: Estimation of multivariate differences between two groups (e.g., multivariate sex differences) with regularized regression methods and predictive approach. See Ilmarinen et al. (2023) <doi:10.1177/08902070221088155>. Deconstructing difference score correlations (e.g., gender-equality paradox), see Ilmarinen & Lönnqvist (2024) <doi:10.1037/pspp0000508>.
Includes also tools that help in understanding difference score reliability, conditional intra-class correlations, tail-dependency, and heterogeneity of variance estimates. Package development was supported by the Academy of Finland research grant 338891.
Author: Ville-Juhani Ilmarinen [aut, cre]
Maintainer: Ville-Juhani Ilmarinen <vj.ilmarinen@gmail.com>
Diff between multid versions 1.0.0 dated 2024-02-15 and 1.0.1 dated 2025-09-04
DESCRIPTION | 18 ++-- MD5 | 40 ++++----- NEWS.md | 10 ++ R/D_regularized.R | 2 R/D_regularized_fold_out.R | 6 - R/D_regularized_out.R | 2 R/ddsc_ml.R | 22 ++++- R/deprecated_functions.R |only R/plot_ddsc.R | 58 ++++++++++--- R/qcc.R | 17 +++- README.md | 22 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/multivariate_sex_differences_in_personality.R | 6 - inst/doc/multivariate_sex_differences_in_personality.html | 59 ++++++-------- man/D_regularized.Rd | 2 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/multid-deprecated.Rd |only man/plot_ddsc.Rd | 14 +++ man/qcc.Rd | 3 22 files changed, 195 insertions(+), 90 deletions(-)
Title: Ensemble Algorithms for Time Series Forecasting with Modeltime
Description: A 'modeltime' extension that implements time series ensemble forecasting methods including model averaging,
weighted averaging, and stacking. These techniques are popular methods
to improve forecast accuracy and stability.
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime.ensemble versions 1.0.5 dated 2025-08-28 and 1.1.0 dated 2025-09-04
DESCRIPTION | 10 MD5 | 8 NEWS.md | 6 R/ensemble_model_spec.R | 76 ++----- inst/doc/nested-ensembles.html | 444 ++++++++++++++++++++--------------------- 5 files changed, 267 insertions(+), 277 deletions(-)
More information about modeltime.ensemble at CRAN
Permanent link
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut] ,
Lona Koers [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 1.0.0 dated 2024-09-11 and 1.1.0 dated 2025-09-04
DESCRIPTION | 16 ++++++------- MD5 | 50 +++++++++++++++++++++--------------------- NAMESPACE | 2 + NEWS.md | 6 +++++ R/classif_acc.R | 6 ++--- R/helper.R | 8 ++++++ R/measures.R | 20 ++++++++++++++++ R/regr_bias.R | 6 ++--- R/regr_pbias.R | 6 ++--- R/regr_rae.R | 1 R/regr_rrse.R | 2 + R/regr_rse.R | 2 + R/regr_rsq.R | 1 R/regr_sae.R | 15 +++++++++--- R/regr_sse.R | 15 +++++++++--- build/partial.rdb |binary man/acc.Rd | 6 ++--- man/bias.Rd | 4 +-- man/measures.Rd | 3 +- man/mlr3measures-package.Rd | 2 - man/pbias.Rd | 4 +-- man/sae.Rd | 13 ++++++++-- man/sse.Rd | 13 ++++++++-- tests/testthat/test_binary.R | 11 +++++---- tests/testthat/test_classif.R | 12 +++++----- tests/testthat/test_regr.R | 34 +++++++--------------------- 26 files changed, 157 insertions(+), 101 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network. Modern networking and concurrency, built on 'nanonext' and
'NNG', ensures reliable scheduling over fast inter-process
communications or TCP/IP secured by TLS. Launch remote resources via
SSH or cluster managers for distributed computing. Scales efficiently
to millions of tasks over thousands of connections, requiring no
storage on the file system due to its inherently queued architecture.
Innovative features include event-driven promises, asynchronous
parallel map, and seamless serialization of otherwise non-exportable
reference objects.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.4.1 dated 2025-07-15 and 2.5.0 dated 2025-09-04
mirai-2.4.1/mirai/inst/doc/v05-packages.Rmd |only mirai-2.4.1/mirai/inst/doc/v05-packages.html |only mirai-2.4.1/mirai/inst/doc/v06-questions.Rmd |only mirai-2.4.1/mirai/inst/doc/v06-questions.html |only mirai-2.4.1/mirai/vignettes/v05-packages.Rmd |only mirai-2.4.1/mirai/vignettes/v06-questions.Rmd |only mirai-2.5.0/mirai/DESCRIPTION | 10 mirai-2.5.0/mirai/MD5 | 107 ++-- mirai-2.5.0/mirai/NAMESPACE | 5 mirai-2.5.0/mirai/NEWS.md | 40 + mirai-2.5.0/mirai/R/daemon.R | 101 ++-- mirai-2.5.0/mirai/R/daemons.R | 501 +++++++++++++--------- mirai-2.5.0/mirai/R/dispatcher.R | 98 ++-- mirai-2.5.0/mirai/R/launchers.R | 134 ++--- mirai-2.5.0/mirai/R/map.R | 148 +++--- mirai-2.5.0/mirai/R/mirai-package.R | 23 - mirai-2.5.0/mirai/R/mirai.R | 205 +++++---- mirai-2.5.0/mirai/R/next.R | 3 mirai-2.5.0/mirai/R/parallel.R | 22 mirai-2.5.0/mirai/R/promises.R | 40 - mirai-2.5.0/mirai/README.md | 272 ++++------- mirai-2.5.0/mirai/build/vignette.rds |binary mirai-2.5.0/mirai/inst/doc/mirai.Rmd | 362 ++++++++------- mirai-2.5.0/mirai/inst/doc/mirai.html | 331 +++++++------- mirai-2.5.0/mirai/inst/doc/v01-map.Rmd | 30 - mirai-2.5.0/mirai/inst/doc/v01-map.html | 30 - mirai-2.5.0/mirai/inst/doc/v02-promises.Rmd | 80 +-- mirai-2.5.0/mirai/inst/doc/v02-promises.html | 75 +-- mirai-2.5.0/mirai/inst/doc/v03-serialization.Rmd | 60 +- mirai-2.5.0/mirai/inst/doc/v03-serialization.html | 60 +- mirai-2.5.0/mirai/inst/doc/v04-parallel.Rmd | 18 mirai-2.5.0/mirai/inst/doc/v04-parallel.html | 18 mirai-2.5.0/mirai/inst/doc/v05-opentelemetry.Rmd |only mirai-2.5.0/mirai/inst/doc/v05-opentelemetry.html |only mirai-2.5.0/mirai/inst/doc/v06-packages.Rmd |only mirai-2.5.0/mirai/inst/doc/v06-packages.html |only mirai-2.5.0/mirai/inst/doc/v07-questions.Rmd |only mirai-2.5.0/mirai/inst/doc/v07-questions.html |only mirai-2.5.0/mirai/man/call_mirai.Rd | 3 mirai-2.5.0/mirai/man/collect_mirai.Rd | 14 mirai-2.5.0/mirai/man/daemon.Rd | 21 mirai-2.5.0/mirai/man/daemons.Rd | 39 - mirai-2.5.0/mirai/man/daemons_set.Rd | 7 mirai-2.5.0/mirai/man/dispatcher.Rd | 19 mirai-2.5.0/mirai/man/everywhere.Rd | 29 - mirai-2.5.0/mirai/man/info.Rd |only mirai-2.5.0/mirai/man/launch_local.Rd | 26 - mirai-2.5.0/mirai/man/make_cluster.Rd | 7 mirai-2.5.0/mirai/man/mirai-package.Rd | 9 mirai-2.5.0/mirai/man/mirai.Rd | 7 mirai-2.5.0/mirai/man/mirai_map.Rd | 2 mirai-2.5.0/mirai/man/require_daemons.Rd | 16 mirai-2.5.0/mirai/man/status.Rd | 3 mirai-2.5.0/mirai/man/with_daemons.Rd |only mirai-2.5.0/mirai/tests/tests.R | 220 ++++++--- mirai-2.5.0/mirai/vignettes/mirai.Rmd | 362 ++++++++------- mirai-2.5.0/mirai/vignettes/v01-map.Rmd | 30 - mirai-2.5.0/mirai/vignettes/v02-promises.Rmd | 80 +-- mirai-2.5.0/mirai/vignettes/v03-serialization.Rmd | 60 +- mirai-2.5.0/mirai/vignettes/v04-parallel.Rmd | 18 mirai-2.5.0/mirai/vignettes/v05-opentelemetry.Rmd |only mirai-2.5.0/mirai/vignettes/v06-packages.Rmd |only mirai-2.5.0/mirai/vignettes/v07-questions.Rmd |only 63 files changed, 1926 insertions(+), 1819 deletions(-)
Title: Obtaining Open Data from Instituto Canario De Estadistica
(ISTAC) API
Description: You can access to open data published in Instituto Canario De Estadistica (ISTAC) APIs at <https://datos.canarias.es/api/estadisticas/>.
Author: Alberto Gonzalez [cph],
Elisa Jorge [aut, cre]
Maintainer: Elisa Jorge <ejorgon@gobiernodecanarias.org>
Diff between istacr versions 0.2.2 dated 2022-12-20 and 0.3.0 dated 2025-09-04
DESCRIPTION | 21 MD5 | 166 ++- NAMESPACE | 134 +-- R/indicators-geographic.R | 122 +- R/indicators-indicators.R | 149 +-- R/indicators-systems.R | 212 ++--- R/services.R | 361 ++++---- R/statistical-resources-cubes.R | 194 ++-- R/statistical-resources-queries.R | 130 +-- R/structural-resources-category.R | 424 +++++----- R/structural-resources-clasifications.R | 360 ++++---- R/structural-resources-concepts.R | 292 +++--- R/structural-resources-datastructures.R | 368 ++++---- R/structural-resources-variables.R | 264 +++--- README.md |only man/docs |only man/get_indicators.Rd | 82 - man/get_indicators_code.Rd | 40 man/get_indicators_code_data.Rd | 76 - man/get_indicators_geographic_granularities.Rd | 30 man/get_indicators_geographical_values.Rd | 60 - man/get_indicators_subjects.Rd | 30 man/get_indicators_systems.Rd | 50 - man/get_indicators_systems_code.Rd | 40 man/get_indicators_systems_code_instances.Rd | 92 +- man/get_indicators_systems_code_instances_code.Rd | 54 - man/get_indicators_systems_code_instances_code_data.Rd | 72 - man/get_indicators_time_granularities.Rd | 32 man/get_statisticalresources_datasets.Rd | 62 - man/get_statisticalresources_datasets_agency.Rd | 68 - man/get_statisticalresources_datasets_agency_resource.Rd | 82 - man/get_statisticalresources_datasets_agency_resource_version.Rd | 90 +- man/get_statisticalresources_queries.Rd | 62 - man/get_statisticalresources_queries_agency.Rd | 68 - man/get_statisticalresources_queries_agency_resource.Rd | 78 - man/get_structuralresources_categorisations.Rd | 64 - man/get_structuralresources_categorisations_agency.Rd | 62 - man/get_structuralresources_categorisations_agency_resource.Rd | 68 - man/get_structuralresources_categorisations_agency_resource_version.Rd | 58 - man/get_structuralresources_category_schemes.Rd | 64 - man/get_structuralresources_category_schemes_agency.Rd | 70 - man/get_structuralresources_category_schemes_agency_resource.Rd | 74 - man/get_structuralresources_category_schemes_agency_resource_version.Rd | 58 - man/get_structuralresources_category_schemes_agency_resource_version_categories.Rd | 82 - man/get_structuralresources_category_schemes_agency_resource_version_categories_id.Rd | 78 - man/get_structuralresources_codelist_families.Rd | 56 - man/get_structuralresources_codelist_families_id.Rd | 34 man/get_structuralresources_codelists.Rd | 56 - man/get_structuralresources_codelists_agency.Rd | 64 - man/get_structuralresources_codelists_agency_resource.Rd | 70 - man/get_structuralresources_codelists_agency_resource_version.Rd | 58 - man/get_structuralresources_codelists_agency_resource_version_codes.Rd | 110 +- man/get_structuralresources_codelists_agency_resource_version_codes_codeid.Rd | 58 - man/get_structuralresources_codelists_agency_resource_version_recode.Rd |only man/get_structuralresources_codelists_agency_resource_version_restrictions.Rd |only man/get_structuralresources_concept_schemes.Rd | 64 - man/get_structuralresources_concept_schemes_agency.Rd | 72 - man/get_structuralresources_concept_schemes_agency_resource.Rd | 74 - man/get_structuralresources_concept_schemes_agency_resource_version.Rd | 58 - man/get_structuralresources_concept_schemes_agency_resource_version_concepts.Rd | 90 +- man/get_structuralresources_concept_schemes_agency_resource_version_concepts_id.Rd | 68 - man/get_structuralresources_concept_types.Rd | 28 man/get_structuralresources_content_constraints.Rd | 64 - man/get_structuralresources_content_constraints_agency.Rd | 62 - man/get_structuralresources_content_constraints_agency_resource.Rd | 74 - man/get_structuralresources_content_constraints_agency_resource_version.Rd | 58 - man/get_structuralresources_content_constraints_agency_resource_version_regions.Rd | 68 - man/get_structuralresources_data_structures.Rd | 64 - man/get_structuralresources_data_structures_agency.Rd | 62 - man/get_structuralresources_data_structures_agency_resource.Rd | 74 - man/get_structuralresources_data_structures_agency_resource_version.Rd | 60 - man/get_structuralresources_geoinfo.Rd | 76 - man/get_structuralresources_variable_families.Rd | 56 - man/get_structuralresources_variable_families_id.Rd | 34 man/get_structuralresources_variable_families_id_variables.Rd | 62 - man/get_structuralresources_variableelements.Rd | 62 - man/get_structuralresources_variableelements_resource.Rd | 38 man/get_structuralresources_variables.Rd | 56 - man/get_structuralresources_variables_id.Rd | 34 79 files changed, 3573 insertions(+), 3434 deletions(-)
Title: Reproducible Integrated Species Distribution Models Across
Norway using 'INLA'
Description: Integration of disparate datasets is needed in order to make efficient use of all available data and thereby address the issues currently threatening biodiversity.
Data integration is a powerful modeling framework which allows us to combine these datasets together into a single model, yet retain the strengths of each individual dataset.
We therefore introduce the package, 'intSDM': an R package designed to help ecologists develop a reproducible workflow of integrated species distribution models, using data both provided from the user as well as data obtained freely online.
An introduction to data integration methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.
Author: Philip Mostert [aut, cre],
Angeline Bruls [aut],
Ragnhild {Bjoerkas} [aut],
Wouter Koch [aut],
Ellen Martin [aut]
Maintainer: Philip Mostert <philip.s.mostert@ntnu.no>
This is a re-admission after prior archival of version 2.1.1 dated 2025-01-13
Diff between intSDM versions 2.1.1 dated 2025-01-13 and 2.1.2 dated 2025-09-04
DESCRIPTION | 10 - MD5 | 30 ++-- R/initValues.R | 3 R/obtainRichness.R | 11 + R/species_model.R | 38 +++++- inst/doc/PennsylvaniaWarbler.R | 178 ++++++++++++++-------------- inst/doc/RedList.R | 214 +++++++++++++++++----------------- inst/doc/RedList.html | 4 inst/doc/Richness.R | 134 ++++++++++----------- inst/doc/Richness.html | 4 man/obtainRichness.Rd | 2 man/species_model.Rd | 3 tests/testthat/test-initValues.R | 2 tests/testthat/test-obtainCovariate.R | 4 tests/testthat/test-obtainRichness.R | 12 + tests/testthat/test-sdmWorkflow.R | 12 - 16 files changed, 352 insertions(+), 309 deletions(-)
Title: A Grammar of Animated Graphics
Description: The grammar of graphics as implemented in the 'ggplot2'
package has been successful in providing a powerful API for creating
static visualisation. In order to extend the API for animated graphics
this package provides a completely new set of grammar, fully
compatible with 'ggplot2' for specifying transitions and animations in
a flexible and extensible way.
Author: Thomas Lin Pedersen [aut, cre] ,
David Robinson [aut],
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between gganimate versions 1.0.10 dated 2025-06-21 and 1.0.11 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/plot-build.R | 14 ++++++-------- R/scene.R | 2 +- inst/doc/gganimate.R | 10 +++++----- inst/doc/gganimate.html | 9 +++++---- man/figures/README-unnamed-chunk-2-1.gif |binary 9 files changed, 33 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-17 0.1.6
2024-07-22 0.1.5
2024-01-24 0.1.4
2022-01-04 0.1.3
2021-12-19 0.1.2
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<https://api.iucnredlist.org/>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: William Gearty [aut, cre] ,
Scott Chamberlain [aut] ,
rOpenSci [fnd] ,
Maelle Salmon [ctb] ,
Kevin Cazelles [rev] ,
Stephanie Hazlitt [rev]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rredlist versions 1.1.0 dated 2025-07-27 and 1.1.1 dated 2025-09-04
rredlist-1.1.0/rredlist/vignettes/source |only rredlist-1.1.1/rredlist/DESCRIPTION | 29 + rredlist-1.1.1/rredlist/MD5 | 39 +- rredlist-1.1.1/rredlist/NEWS.md | 11 rredlist-1.1.1/rredlist/R/rl_assessment.R | 203 ++++++------ rredlist-1.1.1/rredlist/inst/CITATION | 2 rredlist-1.1.1/rredlist/inst/doc/benchmarks.Rmd | 69 +--- rredlist-1.1.1/rredlist/inst/doc/benchmarks.html | 69 +--- rredlist-1.1.1/rredlist/inst/doc/research_workflows.Rmd | 94 ++--- rredlist-1.1.1/rredlist/inst/doc/research_workflows.html | 97 ++--- rredlist-1.1.1/rredlist/inst/doc/rredlist.Rmd | 32 - rredlist-1.1.1/rredlist/inst/doc/rredlist.html | 74 ++-- rredlist-1.1.1/rredlist/man/rl_assessment_extract.Rd | 19 - rredlist-1.1.1/rredlist/man/rredlist-package.Rd | 8 rredlist-1.1.1/rredlist/tests/testthat/test-rl_assessment.R | 21 + rredlist-1.1.1/rredlist/vignettes/benchmarks.Rmd | 69 +--- rredlist-1.1.1/rredlist/vignettes/research_workflows.Rmd | 94 ++--- rredlist-1.1.1/rredlist/vignettes/rredlist.Rmd | 32 - rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-20-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-21-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-27-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-7-1.png |only 22 files changed, 468 insertions(+), 494 deletions(-)
Title: Mocking Library for R
Description: The two main functionalities of this package are creating
mock objects (functions) and selectively intercepting calls to a given
function that originate in some other function. It can be used with
any testing framework available for R. Mock objects can be injected
with either this package's own stub() function or a similar
with_mocked_binding() facility present in the 'testthat' package.
Author: Noam Finkelstein [aut],
Lukasz Bartnik [aut],
Jim Hester [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between mockery versions 0.4.4 dated 2023-09-26 and 0.4.5 dated 2025-09-04
mockery-0.4.4/mockery/man/mockery.Rd |only mockery-0.4.5/mockery/DESCRIPTION | 15 +-- mockery-0.4.5/mockery/LICENSE | 4 mockery-0.4.5/mockery/MD5 | 36 ++++---- mockery-0.4.5/mockery/NEWS.md | 5 + mockery-0.4.5/mockery/R/expectations.R | 6 - mockery-0.4.5/mockery/R/mock-object.R | 43 +++++---- mockery-0.4.5/mockery/R/mockery.R | 30 ------ mockery-0.4.5/mockery/R/stub.R | 2 mockery-0.4.5/mockery/README.md | 11 +- mockery-0.4.5/mockery/build/vignette.rds |binary mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.R | 71 +++++++--------- mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.Rmd | 56 +++++------- mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.html | 60 ++++++------- mockery-0.4.5/mockery/man/call-expectations.Rd | 6 - mockery-0.4.5/mockery/man/mock.Rd | 39 ++++---- mockery-0.4.5/mockery/man/mockery-package.Rd |only mockery-0.4.5/mockery/man/stub.Rd | 2 mockery-0.4.5/mockery/tests/testthat/test-mock-object.R | 58 ++++++------- mockery-0.4.5/mockery/vignettes/mocks-and-testthat.Rmd | 56 +++++------- 20 files changed, 235 insertions(+), 265 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be
used directly from the R console, from 'RStudio', in Shiny
applications and R Markdown documents.
Author: Joe Cheng [aut],
Barret Schloerke [aut] ,
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Garrick Aden-Buie [aut, cre] ,
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Vladimir Agafonkin [ctb, cph] ,
CloudMade [cph] ,
Leaflet contributor [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between leaflet versions 2.2.2 dated 2024-03-26 and 2.2.3 dated 2025-09-04
leaflet-2.2.2/leaflet/man/derivePolygons.Rd |only leaflet-2.2.2/leaflet/man/leaflet-imports.Rd |only leaflet-2.2.3/leaflet/DESCRIPTION | 35 leaflet-2.2.3/leaflet/LICENSE |only leaflet-2.2.3/leaflet/LICENSE.note | 10 leaflet-2.2.3/leaflet/MD5 | 169 - leaflet-2.2.3/leaflet/NAMESPACE | 1 leaflet-2.2.3/leaflet/NEWS.md | 26 leaflet-2.2.3/leaflet/R/colors.R | 86 - leaflet-2.2.3/leaflet/R/controls.R | 4 leaflet-2.2.3/leaflet/R/data.R | 38 leaflet-2.2.3/leaflet/R/layers.R | 1108 +++++++++---- leaflet-2.2.3/leaflet/R/leaflet-package.R | 13 leaflet-2.2.3/leaflet/R/leaflet.R | 73 leaflet-2.2.3/leaflet/R/legacy.R | 3 leaflet-2.2.3/leaflet/R/legend.R | 66 leaflet-2.2.3/leaflet/R/mapPane.R | 14 leaflet-2.2.3/leaflet/R/methods.R | 6 leaflet-2.2.3/leaflet/R/normalize-sp.R | 44 leaflet-2.2.3/leaflet/R/normalize-terra.R | 3 leaflet-2.2.3/leaflet/R/normalize.R | 43 leaflet-2.2.3/leaflet/R/plugin-awesomeMarkers.R | 67 leaflet-2.2.3/leaflet/R/plugin-easybutton.R | 14 leaflet-2.2.3/leaflet/R/plugin-graticule.R | 6 leaflet-2.2.3/leaflet/R/plugin-measure.R | 10 leaflet-2.2.3/leaflet/R/plugin-minimap.R | 14 leaflet-2.2.3/leaflet/R/plugin-providers.R | 36 leaflet-2.2.3/leaflet/R/plugin-simplegraticule.R | 5 leaflet-2.2.3/leaflet/R/plugin-terminator.R | 4 leaflet-2.2.3/leaflet/R/scalebar.R | 18 leaflet-2.2.3/leaflet/R/shiny.R | 6 leaflet-2.2.3/leaflet/R/staticimports.R | 18 leaflet-2.2.3/leaflet/R/utils.R | 98 - leaflet-2.2.3/leaflet/data/atlStorms2005.rda |binary leaflet-2.2.3/leaflet/data/breweries91.rda |binary leaflet-2.2.3/leaflet/data/gadmCHE.rda |binary leaflet-2.2.3/leaflet/man/addAwesomeMarkers.Rd | 12 leaflet-2.2.3/leaflet/man/addGraticule.Rd | 9 leaflet-2.2.3/leaflet/man/addLayersControl.Rd | 10 leaflet-2.2.3/leaflet/man/addLegend.Rd | 23 leaflet-2.2.3/leaflet/man/addMapPane.Rd | 6 leaflet-2.2.3/leaflet/man/addMiniMap.Rd | 16 leaflet-2.2.3/leaflet/man/addProviderTiles.Rd | 16 leaflet-2.2.3/leaflet/man/addRasterImage.Rd | 22 leaflet-2.2.3/leaflet/man/addScaleBar.Rd | 6 leaflet-2.2.3/leaflet/man/addSimpleGraticule.Rd | 9 leaflet-2.2.3/leaflet/man/addTerminator.Rd | 2 leaflet-2.2.3/leaflet/man/atlStorms2005.Rd | 8 leaflet-2.2.3/leaflet/man/awesomeIconList.Rd | 2 leaflet-2.2.3/leaflet/man/awesomeIcons.Rd | 18 leaflet-2.2.3/leaflet/man/breweries91.Rd | 8 leaflet-2.2.3/leaflet/man/colorNumeric.Rd | 63 leaflet-2.2.3/leaflet/man/deprecated.Rd | 1 leaflet-2.2.3/leaflet/man/derivePoints.Rd | 29 leaflet-2.2.3/leaflet/man/dispatch.Rd | 18 leaflet-2.2.3/leaflet/man/easyButton.Rd | 8 leaflet-2.2.3/leaflet/man/evalFormula.Rd | 7 leaflet-2.2.3/leaflet/man/expandLimitsBbox.Rd | 5 leaflet-2.2.3/leaflet/man/filterNULL.Rd | 10 leaflet-2.2.3/leaflet/man/gadmCHE.Rd | 10 leaflet-2.2.3/leaflet/man/getMapData.Rd | 7 leaflet-2.2.3/leaflet/man/groupOptions.Rd | 4 leaflet-2.2.3/leaflet/man/iconList.Rd | 2 leaflet-2.2.3/leaflet/man/icons.Rd | 7 leaflet-2.2.3/leaflet/man/leaflet-package.Rd | 3 leaflet-2.2.3/leaflet/man/leaflet.Rd | 31 leaflet-2.2.3/leaflet/man/leafletProxy.Rd | 10 leaflet-2.2.3/leaflet/man/leafletSizingPolicy.Rd | 42 leaflet-2.2.3/leaflet/man/makeAwesomeIcon.Rd | 7 leaflet-2.2.3/leaflet/man/makeIcon.Rd | 2 leaflet-2.2.3/leaflet/man/map-layers.Rd | 36 leaflet-2.2.3/leaflet/man/map-methods.Rd | 2 leaflet-2.2.3/leaflet/man/map-options.Rd | 24 leaflet-2.2.3/leaflet/man/map-shiny.Rd | 2 leaflet-2.2.3/leaflet/man/mapOptions.Rd | 2 leaflet-2.2.3/leaflet/man/previewColors.Rd | 2 leaflet-2.2.3/leaflet/man/providers.Rd | 3 leaflet-2.2.3/leaflet/man/reexports.Rd |only leaflet-2.2.3/leaflet/man/remove.Rd | 28 leaflet-2.2.3/leaflet/man/safeLabel.Rd | 2 leaflet-2.2.3/leaflet/man/showGroup.Rd | 4 leaflet-2.2.3/leaflet/tests/testthat/_snaps/normalize-2.md | 2 leaflet-2.2.3/leaflet/tests/testthat/helper.R | 2 leaflet-2.2.3/leaflet/tests/testthat/test-normalize-2.R | 30 leaflet-2.2.3/leaflet/tests/testthat/test-normalize-3.R | 8 leaflet-2.2.3/leaflet/tests/testthat/test-normalize.R | 20 leaflet-2.2.3/leaflet/tests/testthat/test-raster.R | 6 leaflet-2.2.3/leaflet/tests/testthat/test-tiles.R |only 88 files changed, 1611 insertions(+), 1033 deletions(-)
Title: Data for Generalized Additive Models for Location Scale and
Shape
Description: Data used as examples in the books on Generalized Additive Models for Location Scale and Shape:
Stasinopoulos, Rigby, Heller, Voudouris, De Bastiani (2017). Flexible Regression and Smoothing: Using GAMLSS in R, <doi:10.1201/b21973>.
Rigby, Stasinopoulos, Heller, De Bastiani (2019). Distributions for Modeling Location, Scale, and Shape Using GAMLSS in R, <doi:10.1201/9780429298547>.
Stasinopoulos, Kneib, Klein, Mayr, Heller (2024). Generalized Additive Models for Location, Scale and Shape: A Distributional Regression Approach, with Applications, <doi:10.1017/9781009410076>.
Author: Mikis Stasinopoulos [aut, cre] ,
Robert Rigby [aut] ,
Fernanda De Bastiani [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>
Diff between gamlss.data versions 6.0-6 dated 2024-03-14 and 6.0-7 dated 2025-09-04
gamlss.data-6.0-6/gamlss.data/data/trd.RData |only gamlss.data-6.0-6/gamlss.data/man/trd.Rd |only gamlss.data-6.0-7/gamlss.data/DESCRIPTION | 34 ++++++++++++++++-------- gamlss.data-6.0-7/gamlss.data/MD5 | 11 ++++--- gamlss.data-6.0-7/gamlss.data/NEWS.md |only gamlss.data-6.0-7/gamlss.data/README.md | 13 +++++++-- gamlss.data-6.0-7/gamlss.data/build/partial.rdb |binary gamlss.data-6.0-7/gamlss.data/data/triceps.rda |only gamlss.data-6.0-7/gamlss.data/man/triceps.Rd |only 9 files changed, 40 insertions(+), 18 deletions(-)
Title: Data Sets for Econometrics
Description: Data sets for econometrics, including political science.
Author: Yves Croissant [aut],
Spencer Graves [aut, cre, ctb]
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between Ecdat versions 0.4-2 dated 2022-10-15 and 0.4.7 dated 2025-09-04
DESCRIPTION | 24 ++- MD5 | 76 +++++----- NEWS.md | 6 build/partial.rdb |binary data/ACLEDpopGDP.rda |only data/USGDPpresidents.rda |binary data/USincarcerations.rda |binary inst/WORDLIST | 6 man/ACLEDpopGDP.Rd |only man/Accident.Rd | 2 man/Bids.Rd | 2 man/CRSPday.Rd | 2 man/CRSPmon.Rd | 2 man/Caschool.Rd | 4 man/DM.Rd | 2 man/Diamond.Rd | 2 man/DoctorAUS.Rd | 2 man/FriendFoe.Rd | 2 man/Griliches.Rd | 2 man/Index.Source.Rd | 6 man/LT.Rd | 2 man/Mishkin.Rd | 2 man/Mpyr.Rd | 2 man/OCC1950.Rd | 20 ++ man/OFP.Rd | 2 man/Oil.Rd | 2 man/PatentsHGH.Rd | 2 man/Pound.Rd | 2 man/Somerville.Rd | 2 man/StrikeNb.Rd | 2 man/SumHes.Rd | 2 man/USFinanceIndustry.Rd | 4 man/USGDPpresidents.Rd | 314 +++++++++++++++++++++++++++++++------------- man/USincarcerations.Rd | 47 +++++- man/USstateAbbreviations.Rd | 8 - man/UStaxWords.Rd | 2 man/Yen.Rd | 2 man/breaches.Rd | 4 man/nuclearWeaponStates.Rd | 41 ++--- man/terrorism.Rd | 28 ++- 40 files changed, 422 insertions(+), 208 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.1 dated 2025-07-29 and 1.4.2 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/aaa_values.R | 12 ++++++++++++ R/finalize.R | 11 +++++++++-- R/param_network.R | 4 ++-- R/param_prop_terms.R |only R/param_range_limits.R | 10 ++++++++-- man/dropout.Rd | 2 +- man/finalize.Rd | 3 --- man/get_batch_sizes.Rd |only man/prop_terms.Rd |only tests/testthat/_snaps/finalize.md | 8 ++++++++ tests/testthat/test-aaa_values.R | 23 +++++++++++++++++++++++ tests/testthat/test-finalize.R | 27 ++++++++++++++++++++++++--- tests/testthat/test-params.R | 1 + 17 files changed, 117 insertions(+), 29 deletions(-)
Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
This is a re-admission after prior archival of version 1.0.4 dated 2025-01-15
Diff between cppcontainers versions 1.0.4 dated 2025-01-15 and 1.0.5 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/print.R | 8 ++++---- R/to_r.R | 8 ++++---- R/utils.R | 8 ++++---- build/vignette.rds |binary tests/testthat.R | 24 ++++++++++++------------ 7 files changed, 34 insertions(+), 34 deletions(-)
Title: Synthetic Microdata Generator
Description: This tool fits a non-parametric Bayesian model called a "hierarchically coupled mixture model with local dependence (HCMM-LD)" to the original microdata in order to generate synthetic microdata for privacy protection. The non-parametric feature of the adopted model is useful for capturing the joint distribution of the original input data in a highly flexible manner, leading to the generation of synthetic data whose distributional features are similar to that of the input data. The package allows the original input data to have missing values and impute them with the posterior predictive distribution, so no missing values exist in the synthetic data output. The method builds on the work of Murray and Reiter (2016) <doi:10.1080/01621459.2016.1174132>.
Author: Juhee Lee [aut, cre],
Hang J. Kim [aut],
Young-Min Kim [aut],
Jared Murray [aut]
Maintainer: Juhee Lee <ljh988488@gmail.com>
Diff between synMicrodata versions 2.1.0 dated 2024-11-21 and 2.1.1 dated 2025-09-04
DESCRIPTION | 20 ++++++++++---------- MD5 | 2 +- 2 files changed, 11 insertions(+), 11 deletions(-)
Title: Interactively Filter SNP Datasets
Description: Is designed to interactively and reproducibly visualize and filter SNP
(single-nucleotide polymorphism) datasets. This R-based implementation of SNP
and genotype filters facilitates
an interactive and iterative SNP filtering pipeline, which can be documented
reproducibly via 'rmarkdown'. 'SNPfiltR' contains functions for visualizing
various quality and missing data metrics for a SNP dataset, and then filtering
the dataset based on user specified cutoffs.
All functions take 'vcfR' objects as input, which can easily be
generated by reading standard vcf (variant call format) files into R using
the R package 'vcfR' authored by Knaus and Grünwald (2017) <doi:10.1111/1755-0998.12549>.
Each 'SNPfiltR' function can return a newly filtered 'vcfR' object, which can then be
written to a local directory in standard vcf format using the 'vcfR' package,
for downstream population genetic and phylogenetic analyses.
Author: Devon DeRaad [aut, cre]
Maintainer: Devon DeRaad <devonderaad@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2023-03-17
Diff between SNPfiltR versions 1.0.1 dated 2023-03-17 and 1.0.7 dated 2025-09-04
DESCRIPTION | 15 +++--- MD5 | 22 ++++----- R/assess_missing_data_pca.R | 12 +++-- R/assess_missing_data_tsne.R | 12 +++-- R/filter_allele_balance.R | 4 - R/missing_by_sample.R | 75 +++++++++++++++++++++----------- README.md | 35 +++++++++------ inst/doc/reproducible-vignette.R | 2 inst/doc/reproducible-vignette.Rmd | 4 - inst/doc/reproducible-vignette.html | 84 ++++++++++++++++++------------------ man/filter_allele_balance.Rd | 2 vignettes/reproducible-vignette.Rmd | 4 - 12 files changed, 158 insertions(+), 113 deletions(-)
Title: Read Census Privacy Protected Microdata Files
Description: Implements data processing described in <doi:10.1126/sciadv.abk3283>
to align modern differentially private data with formatting of older US Census
data releases. The primary goal is to read in Census Privacy Protected Microdata
Files data in a reproducible way. This includes tools for aggregating to relevant
levels of geography by creating geographic identifiers which match the US Census
Bureau's numbering. Additionally, there are tools for grouping race numeric
identifiers into categories, consistent with OMB (Office of Management and Budget)
classifications. Functions exist for downloading and linking to existing
sources of privacy protected microdata.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between ppmf versions 0.1.3 dated 2021-12-15 and 0.2.1 dated 2025-09-04
ppmf-0.1.3/ppmf/R/utils-pipe.R |only ppmf-0.1.3/ppmf/man/pipe.Rd |only ppmf-0.2.1/ppmf/DESCRIPTION | 39 ++- ppmf-0.2.1/ppmf/LICENSE | 4 ppmf-0.2.1/ppmf/MD5 | 59 ++--- ppmf-0.2.1/ppmf/NAMESPACE | 25 -- ppmf-0.2.1/ppmf/NEWS.md | 31 -- ppmf-0.2.1/ppmf/R/add_path.R | 305 ++++++++++++----------------- ppmf-0.2.1/ppmf/R/aggregate.R | 107 +++++----- ppmf-0.2.1/ppmf/R/data.R | 5 ppmf-0.2.1/ppmf/R/geoid.R | 37 +-- ppmf-0.2.1/ppmf/R/get_data.R | 98 +-------- ppmf-0.2.1/ppmf/R/ppmf-package.R |only ppmf-0.2.1/ppmf/R/race.R | 30 +- ppmf-0.2.1/ppmf/R/read.R |only ppmf-0.2.1/ppmf/R/read_merge.R | 10 ppmf-0.2.1/ppmf/README.md | 37 ++- ppmf-0.2.1/ppmf/inst/CITATION | 26 +- ppmf-0.2.1/ppmf/inst/WORDLIST |only ppmf-0.2.1/ppmf/man/add_geoid.Rd | 2 ppmf-0.2.1/ppmf/man/add_ppmf12_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/add_ppmf19_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/add_ppmf19r_path.Rd |only ppmf-0.2.1/ppmf/man/add_ppmf4_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/agg.Rd | 2 ppmf-0.2.1/ppmf/man/breakdown_geoid.Rd | 4 ppmf-0.2.1/ppmf/man/download_ppmf.Rd | 5 ppmf-0.2.1/ppmf/man/figures/logo.png |binary ppmf-0.2.1/ppmf/man/get_ppmf_links.Rd | 58 ++--- ppmf-0.2.1/ppmf/man/overwrite_hisp_race.Rd | 2 ppmf-0.2.1/ppmf/man/races.Rd | 1 ppmf-0.2.1/ppmf/man/read_ppmf.Rd | 6 ppmf-0.2.1/ppmf/man/replace_race.Rd | 2 ppmf-0.2.1/ppmf/tests |only 34 files changed, 482 insertions(+), 593 deletions(-)
Title: Score Redistricting Plans with 'PlanScore'
Description: Provides access to the 'PlanScore' Application Programming Interface
(<https://github.com/PlanScore/PlanScore/blob/main/API.md>) for scoring redistricting
plans. Allows for upload of plans from block assignment files and shape files.
For shapes in memory, such as from 'sf' or 'redist', it processes them to save
and upload. Includes tools for tidying responses and saving output from the
website.
Author: Christopher T. Kenny [aut, trl, cre] ,
Michal Migurski [aut] ,
Cory McCartan [art]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between planscorer versions 0.0.2 dated 2024-09-24 and 0.0.3 dated 2025-09-04
DESCRIPTION | 15 LICENSE | 4 MD5 | 80 NAMESPACE | 30 NEWS.md | 5 R/PlanScoreR-package.R | 16 R/api_url.R | 14 R/capture.R | 70 R/ingest.R | 178 - R/key.R | 184 - R/model_versions.R | 32 R/save.R | 78 R/supported_states.R | 32 R/upload.R | 3 README.md | 167 - inst/CITATION | 48 inst/WORDLIST | 16 inst/extdata/null-plan-blockassignments.csv | 22 inst/extdata/null-plan-incumbency.geojson | 200 - inst/httptest2/redact.R | 14 man/figures/README-planscore.png |binary man/key.Rd | 44 man/ps_capture.Rd | 56 man/ps_ingest.Rd | 44 man/ps_model_versions.Rd | 36 man/ps_save.Rd | 64 man/ps_set_key.Rd | 56 man/ps_supported_states.Rd | 36 man/upload.Rd | 122 tests/spelling.R | 6 tests/testthat.R | 24 tests/testthat/setup.R | 2 tests/testthat/t/mdlvrs/model_versions.json | 20 tests/testthat/t/supsts/states.json | 1604 ++++++------ tests/testthat/t/upload_f/upload/temporary-2355f6-POST.json | 8 tests/testthat/t/upload_f/upload/temporary-56aa7b-POST.json | 8 tests/testthat/test-ingest.R | 10 tests/testthat/test-model_versions.R | 10 tests/testthat/test-save.R | 24 tests/testthat/test-supported_states.R | 10 tests/testthat/test-upload.R | 18 41 files changed, 1716 insertions(+), 1694 deletions(-)
Title: Pattern Causality Algorithm
Description: A comprehensive package for detecting and analyzing causal relationships in complex systems using pattern-based approaches. Key features include state space reconstruction, pattern identification, and causality strength evaluation.
Author: Stavros Stavroglou [aut, cre] ,
Athanasios Pantelous [aut] ,
Hui Wang [aut]
Maintainer: Stavros Stavroglou <stavros.k.stavroglou@gmail.com>
Diff between patterncausality versions 0.2.1 dated 2025-02-15 and 0.2.2 dated 2025-09-04
DESCRIPTION | 20 +++++++++++--------- MD5 | 14 +++++++------- inst/doc/advanced.html | 5 +++-- inst/doc/dynamic.html | 5 +++-- inst/doc/matrix.html | 11 ++++++----- inst/doc/parallel.html | 5 +++-- inst/doc/patterncausality.html | 5 +++-- inst/doc/series.html | 5 +++-- 8 files changed, 39 insertions(+), 31 deletions(-)
More information about patterncausality at CRAN
Permanent link
Title: Process Metadata from the 'Open Graph Protocol'
Description: Social media sites often embed cards when links are shared, based on
metadata in the 'Open Graph Protocol' (<https://ogp.me/>). This supports extracting
that metadata from a website. It further allows for the creation of tags to
add to a website to support the 'Open Graph Protocol' and provides a list of the
standard tags and their required properties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between opengraph versions 0.0.2 dated 2024-12-10 and 0.0.3 dated 2025-09-04
DESCRIPTION | 17 +- LICENSE | 4 MD5 | 46 +++--- NAMESPACE | 14 +- NEWS.md | 6 R/create.R | 106 +++++++-------- R/parse.R | 76 +++++------ R/property.R | 52 +++---- R/schema.R | 274 ++++++++++++++++++++--------------------- R/validate.R | 40 ++--- README.md | 131 +++++++++---------- inst/WORDLIST | 8 - man/og_create.Rd | 68 +++++----- man/og_parse.Rd | 40 ++--- man/og_property.Rd | 44 +++--- man/og_schema.Rd | 38 ++--- man/og_validate.Rd | 42 +++--- tests/spelling.R | 6 tests/testthat.R | 24 +-- tests/testthat/test-create.R | 42 +++--- tests/testthat/test-parse.R | 8 - tests/testthat/test-property.R | 8 - tests/testthat/test-schema.R | 6 tests/testthat/test-validate.R | 16 +- 24 files changed, 558 insertions(+), 558 deletions(-)
Title: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description: A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
Author: Alem Gusinac [aut, cre] ,
Thomas Ederveen [aut] ,
Annemarie Boleij [aut, fnd]
Maintainer: Alem Gusinac <alem.gusinac@gmail.com>
Diff between OmicFlow versions 1.3.0 dated 2025-09-01 and 1.3.1 dated 2025-09-04
OmicFlow-1.3.0/OmicFlow/tests/testthat/_snaps |only OmicFlow-1.3.1/OmicFlow/DESCRIPTION | 8 ++--- OmicFlow-1.3.1/OmicFlow/MD5 | 22 ++++----------- OmicFlow-1.3.1/OmicFlow/R/omics-class.R | 2 - OmicFlow-1.3.1/OmicFlow/inst/report.Rmd | 2 - OmicFlow-1.3.1/OmicFlow/man/omics.Rd | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat.R | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat/test-autoflow.R | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat/test-write_biom.R | 2 - 9 files changed, 17 insertions(+), 25 deletions(-)
Title: Extended Agglomerative Hierarchical Clustering
Description: A comprehensive collection of linkage methods for agglomerative
hierarchical clustering on a matrix of proximity data (distances or
similarities), returning a multifurcated dendrogram or multidendrogram.
Multidendrograms can group more than two clusters when ties in proximity data
occur, and therefore they do not depend on the order of the input data.
Descriptive measures to analyze the resulting dendrogram are additionally
provided. <doi:10.18637/jss.v114.i02>.
Author: Alberto Fernandez [aut, cre] ,
Sergio Gomez [aut]
Maintainer: Alberto Fernandez <alberto.fernandez@urv.cat>
Diff between mdendro versions 2.2.2 dated 2025-08-20 and 2.2.3 dated 2025-09-04
DESCRIPTION | 10 ++++----- MD5 | 6 ++--- inst/CITATION | 60 +++++++++++++++++++++++++++++++++++++++++++++++---------- man/linkage.Rd | 45 ++++++++++++++++++++++++++---------------- 4 files changed, 86 insertions(+), 35 deletions(-)
Title: Calculation of Low Flow Statistics for Daily Stream Flow Data
Description: The "Manual on Low-flow Estimation and Prediction" (Gustard & Demuth (2009, ISBN:978-92-63-11029-9)), published by the World Meteorological Organisation, gives a comprehensive summary on how to analyse stream flow data focusing on low-flows. This packages provides functions to compute the described statistics and produces plots similar to the ones in the manual.
Author: Tobias Gauster [ctb, cre],
Gregor Laaha [aut] ,
Daniel Koffler [aut]
Maintainer: Tobias Gauster <t.gauster@gmail.com>
Diff between lfstat versions 0.9.12 dated 2022-11-08 and 0.9.13 dated 2025-09-04
lfstat-0.9.12/lfstat/man/rainpeakplot.Rd |only lfstat-0.9.13/lfstat/DESCRIPTION | 18 - lfstat-0.9.13/lfstat/MD5 | 69 ++-- lfstat-0.9.13/lfstat/NAMESPACE | 301 +++++++++++++-------- lfstat-0.9.13/lfstat/NEWS.md | 11 lfstat-0.9.13/lfstat/R/1NAs.R | 3 lfstat-0.9.13/lfstat/R/2processes.R | 4 lfstat-0.9.13/lfstat/R/3lfindices.R | 18 - lfstat-0.9.13/lfstat/R/4flowduration.R | 28 - lfstat-0.9.13/lfstat/R/5extreme.R | 39 +- lfstat-0.9.13/lfstat/R/6streamdef.R | 2 lfstat-0.9.13/lfstat/R/7multistation.R | 1 lfstat-0.9.13/lfstat/R/hyear.R | 13 lfstat-0.9.13/lfstat/R/lfobj.R | 20 + lfstat-0.9.13/lfstat/R/lfstat-package.R |only lfstat-0.9.13/lfstat/R/methods.R | 2 lfstat-0.9.13/lfstat/R/misc.R | 19 + lfstat-0.9.13/lfstat/R/options.R | 1 lfstat-0.9.13/lfstat/R/pooling.R | 27 + lfstat-0.9.13/lfstat/R/readsheets.R | 1 lfstat-0.9.13/lfstat/README.md | 10 lfstat-0.9.13/lfstat/build/partial.rdb |binary lfstat-0.9.13/lfstat/inst/WORDLIST | 6 lfstat-0.9.13/lfstat/man/apply.seasonal.Rd | 2 lfstat-0.9.13/lfstat/man/as.xts.lfobj.Rd | 2 lfstat-0.9.13/lfstat/man/cdf_ev.Rd | 4 lfstat-0.9.13/lfstat/man/fill_na.Rd | 2 lfstat-0.9.13/lfstat/man/flowunit.Rd | 2 lfstat-0.9.13/lfstat/man/lfstat-package.Rd | 2 lfstat-0.9.13/lfstat/man/plot.deficit.Rd | 4 lfstat-0.9.13/lfstat/man/recessionplot.Rd |only lfstat-0.9.13/lfstat/man/rfa.Rd | 4 lfstat-0.9.13/lfstat/man/rfaplot.Rd | 17 - lfstat-0.9.13/lfstat/man/sbplot.Rd | 2 lfstat-0.9.13/lfstat/man/seasindex.Rd | 4 lfstat-0.9.13/lfstat/man/seasratio.Rd | 2 lfstat-0.9.13/lfstat/tests/testthat/test-pooling.R | 4 37 files changed, 389 insertions(+), 255 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-27 1.1.0
Title: Batch Experiments for 'mlr3'
Description: Extends the 'mlr3' package with a connector to the package
'batchtools'. This allows to run large-scale benchmark experiments on
scheduled high-performance computing clusters.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3batchmark versions 0.2.1 dated 2025-05-26 and 0.2.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ man/mlr3batchmark-package.Rd | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-20 0.4.1
2014-04-23 0.4
2011-01-29 0.3
2007-03-14 0.2.3
Title: Pedigree Functions
Description: Routines to handle family data with a pedigree object. The initial purpose
was to create correlation structures that describe family relationships such
as kinship and identity-by-descent, which can be used to model family data
in mixed effects models, such as in the coxme function. Also includes a tool
for pedigree drawing which is focused on producing compact layouts without
intervention. Recent additions include utilities to trim the pedigree object
with various criteria, and kinship for the X chromosome.
Author: Jason Sinnwell [aut, cre],
Terry Therneau [aut],
Daniel Schaid [ctb],
Elizabeth Atkinson [ctb],
Carly Mester [ctb]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between kinship2 versions 1.9.6.1 dated 2024-03-24 and 1.9.6.2 dated 2025-09-04
kinship2-1.9.6.1/kinship2/inst/doc/LICENSE |only kinship2-1.9.6.2/kinship2/DESCRIPTION | 9 kinship2-1.9.6.2/kinship2/MD5 | 34 - kinship2-1.9.6.2/kinship2/R/kinship2.R | 8 kinship2-1.9.6.2/kinship2/build/vignette.rds |binary kinship2-1.9.6.2/kinship2/inst/doc/GPL2.txt |only kinship2-1.9.6.2/kinship2/inst/doc/pedigree.Rmd | 2 kinship2-1.9.6.2/kinship2/inst/doc/pedigree.html | 280 ++++------ kinship2-1.9.6.2/kinship2/man/ibdMatrix.Rd | 3 kinship2-1.9.6.2/kinship2/tests/failure.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/makefam.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/monozygote.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/subscript.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.fixParents.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.kinX.Rout.save | 16 kinship2-1.9.6.2/kinship2/tests/test.pedigree.shrink.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.pedigree.unrelated.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/twin.Rout.save | 12 kinship2-1.9.6.2/kinship2/vignettes/pedigree.Rmd | 2 19 files changed, 218 insertions(+), 232 deletions(-)
Title: A Comprehensive Toolkit for Fast and Efficient Spatial
Interpolation
Description: Spatial interpolation toolkit designed for environmental and geospatial applications. It includes a range of methods, from traditional techniques to advanced machine learning approaches, ensuring accurate and efficient estimation of values in unobserved locations.
Author: Jonnathan Landi [aut, cre, cph] ,
Marco Mogro [aut]
Maintainer: Jonnathan Landi <jonnathan.landi@outlook.com>
Diff between InterpolateR versions 1.3-4 dated 2025-05-02 and 1.4-3 dated 2025-09-04
DESCRIPTION | 19 MD5 | 57 - NAMESPACE | 48 - NEWS.md | 99 +-- R/Cressman.R | 689 ++++++++++++--------- R/IDW.R | 661 ++++++++++++-------- R/Intr_Connections_module.R | 465 ++++++++------ R/Intr_gof.R | 256 ++++--- R/Kriging_Ordinary.R |only R/RFmerge.R | 644 ++++++++++---------- R/RFplus.R | 1061 ++++++++++++++++++--------------- R/create_data.R | 24 R/zzz.R | 129 ++-- README.md | 624 +++++++++---------- build/vignette.rds |binary inst/NEWS | 44 - inst/doc/InterpolateR.Rmd | 71 ++ inst/doc/InterpolateR.html | 111 +++ man/Cressman.Rd | 350 +++++----- man/IDW.Rd | 320 +++++---- man/Kriging_Ordinary.Rd |only man/RFmerge.Rd | 338 +++++----- man/RFplus.Rd | 384 +++++------ man/create_data.Rd | 104 +-- tests/testthat/test-Cressman.R | 307 +++++---- tests/testthat/test-IDW.R | 286 ++++---- tests/testthat/test-Kriging_Ordinary.R |only tests/testthat/test-RFmerge.R | 504 +++++++-------- tests/testthat/test-RFplus.R | 534 ++++++++-------- tests/testthat/test-create_data.R | 72 +- vignettes/InterpolateR.Rmd | 71 ++ 31 files changed, 4591 insertions(+), 3681 deletions(-)
Title: MCMC for Spike and Slab Regression
Description: Spike and slab regression with a variety of residual error
distributions corresponding to Gaussian, Student T, probit, logit, SVM, and a
few others. Spike and slab regression is Bayesian regression with prior
distributions containing a point mass at zero. The posterior updates the
amount of mass on this point, leading to a posterior distribution that is
actually sparse, in the sense that if you sample from it many coefficients are
actually zeros. Sampling from this posterior distribution is an elegant way
to handle Bayesian variable selection and model averaging. See
<DOI:10.1504/IJMMNO.2014.059942> for an explanation of the Gaussian case.
Author: Steven L. Scott [aut, cre]
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between BoomSpikeSlab versions 1.2.6 dated 2023-12-16 and 1.2.7 dated 2025-09-04
DESCRIPTION | 21 +++++++++++++-------- MD5 | 6 +++--- man/nnet.Rd | 20 ++++++++++---------- man/suggest.burn.Rd | 5 ++--- 4 files changed, 28 insertions(+), 24 deletions(-)