Fri, 05 Sep 2025

Package CardioDataSets updated to version 0.2.0 with previous version 0.1.0 dated 2025-05-13

Title: A Comprehensive Collection of Cardiovascular and Heart Disease Datasets
Description: Offers a diverse collection of datasets focused on cardiovascular and heart disease research, including heart failure, myocardial infarction, aortic dissection, transplant outcomes, cardiovascular risk factors, drug efficacy, and mortality trends. Designed for researchers, clinicians, epidemiologists, and data scientists, the package features clinical, epidemiological, and simulated datasets covering a wide range of conditions and treatments such as statins, anticoagulants, and beta blockers. It supports analyses related to disease progression, treatment effects, rehospitalization, and public health outcomes across various cardiovascular patient populations.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>

Diff between CardioDataSets versions 0.1.0 dated 2025-05-13 and 0.2.0 dated 2025-09-05

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Package NMsim updated to version 0.2.5 with previous version 0.2.4 dated 2025-07-15

Title: Seamless 'Nonmem' Simulation Platform
Description: A complete and seamless 'Nonmem' simulation interface within R. Turns 'Nonmem' control streams into simulation control streams, executes them with specified simulation input data and returns the results. The simulation is performed by 'Nonmem', eliminating manual work and risks of re-implementation of models in other tools.
Author: Philip Delff [aut, cre], Brian Reilly [ctb], Sanaya Shroff [ctb], Boris Grinshpun [ctb]
Maintainer: Philip Delff <philip@delff.dk>

Diff between NMsim versions 0.2.4 dated 2025-07-15 and 0.2.5 dated 2025-09-05

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 NMsim-0.2.5/NMsim/DESCRIPTION                                                                    |    6 
 NMsim-0.2.5/NMsim/MD5                                                                            |  101 +++--
 NMsim-0.2.5/NMsim/NAMESPACE                                                                      |    1 
 NMsim-0.2.5/NMsim/NEWS.md                                                                        |   31 +
 NMsim-0.2.5/NMsim/R/NMcreateDoses.R                                                              |   23 +
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 NMsim-0.2.5/NMsim/R/NMreadSim.R                                                                  |    8 
 NMsim-0.2.5/NMsim/R/NMreadSimOne.R                                                               |    4 
 NMsim-0.2.5/NMsim/R/NMsim.R                                                                      |   95 +++--
 NMsim-0.2.5/NMsim/R/NMsimRes_utils.R                                                             |    3 
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 NMsim-0.2.5/NMsim/R/NMwriteInitsOne.R                                                            |   39 +-
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 NMsim-0.2.5/NMsim/R/sampleCovs.R                                                                 |   10 
 NMsim-0.2.5/NMsim/R/seedFunDefault.R                                                             |    1 
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 NMsim-0.2.5/NMsim/README.md                                                                      |   10 
 NMsim-0.2.5/NMsim/man/NMcreateDoses.Rd                                                           |   10 
 NMsim-0.2.5/NMsim/man/NMreadInits.Rd                                                             |    1 
 NMsim-0.2.5/NMsim/man/NMsim.Rd                                                                   |   70 ++-
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Package OEFPIL readmission to version 0.1.2 with previous version 0.1.1 dated 2021-11-04

Title: Optimal Estimation of Function Parameters by Iterated Linearization
Description: Package for estimating the parameters of a nonlinear function using iterated linearization via Taylor series. Method is based on Kubáček (2000) ISBN: 80-244-0093-6. The algorithm is a generalization of the procedure given in Köning, R., Wimmer, G. and Witkovský, V. (2014) <doi:10.1088/0957-0233/25/11/115001>.
Author: Stanislav Zamecnik [aut, cre], Vojtech Sindlar [aut] , Zdenka Gerslova [aut] , Gejza Wimmer [aut] , Technology Agency of the Czech Republic [fnd] , Masaryk University, a public university, ID: 00216224 [cph]
Maintainer: Stanislav Zamecnik <zamecnik@math.muni.cz>

This is a re-admission after prior archival of version 0.1.1 dated 2021-11-04

Diff between OEFPIL versions 0.1.1 dated 2021-11-04 and 0.1.2 dated 2025-09-05

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Package gptzeror updated to version 0.0.2 with previous version 0.0.1 dated 2023-06-05

Title: Identify Text Written by Large Language Models using 'GPTZero'
Description: An R interface to the 'GPTZero' API (<https://gptzero.me/docs>). Allows users to classify text into human and computer written with probabilities. Formats the data into data frames where each sentence is an observation. Paragraph-level and document-level predictions are organized to align with the sentences.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>

Diff between gptzeror versions 0.0.1 dated 2023-06-05 and 0.0.2 dated 2025-09-05

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 gptzeror-0.0.2/gptzeror/NAMESPACE                                                                         |   18 
 gptzeror-0.0.2/gptzeror/NEWS.md                                                                           |    4 
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 gptzeror-0.0.2/gptzeror/tests/testthat.R                                                                  |   24 
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Package ggPMX updated to version 1.3.2 with previous version 1.3.1 dated 2025-08-27

Title: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models
Description: At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling activities in order to reduce the overall effort required for generating such plots. For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox, called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP <doi:10.1002/psp4.12161>. While not required, you can get/install the 'R' 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required Chart Data instead of exporting it from the 'Monolix' gui.
Author: Amine Gassem [aut], Bruno Bieth [aut], Irina Baltcheva [aut], Thomas Dumortier [aut], Christian Bartels [aut], Souvik Bhattacharya [aut], Inga Ludwig [aut], Ines Paule [aut], Didier Renard [aut], Matthew Fidler [aut] , Seid Hamzic [aut], Benjamin Gui [...truncated...]
Maintainer: Aleksandr Pogodaev <alex.pogodaev@novartis.com>

Diff between ggPMX versions 1.3.1 dated 2025-08-27 and 1.3.2 dated 2025-09-05

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Package BrazilCrime updated to version 0.3.0 with previous version 0.2.1 dated 2024-09-14

Title: Accesses Brazilian Public Security Data from SINESP Since 2015
Description: Allows access to data from the Brazilian Public Security Information System (SINESP) by state and municipality. It should be emphasized that the package only extracts the data and facilitates its manipulation in R. Therefore, its sole purpose is to support empirical research. All data credits belong to SINESP, an integrated information platform developed and maintained by the National Secretariat of Public Security (SENASP) of the Ministry of Justice and Public Security. <https://www.gov.br/mj/pt-br/assuntos/sua-seguranca/seguranca-publica/sinesp-1>.
Author: Giovanni Vargette [aut, cre] , Igor Laltuf [aut] , Marcelo Justus [aut]
Maintainer: Giovanni Vargette <g216978@dac.unicamp.br>

Diff between BrazilCrime versions 0.2.1 dated 2024-09-14 and 0.3.0 dated 2025-09-05

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New package SLGP with initial version 1.0.0
Package: SLGP
Title: Spatial Logistic Gaussian Process for Field Density Estimation
Version: 1.0.0
Maintainer: Athenais Gautier <athenais.gautier@onera.fr>
Description: Provides tools for conditional and spatially dependent density estimation using Spatial Logistic Gaussian Processes (SLGPs). The approach represents probability densities through finite-rank Gaussian process priors transformed via a spatial logistic density transformation, enabling flexible non-parametric modeling of heterogeneous data. Functionality includes density prediction, quantile and moment estimation, sampling methods, and preprocessing routines for basis functions. Applications arise in spatial statistics, machine learning, and uncertainty quantification. The methodology builds on the framework of Leonard (1978) <doi:10.1111/j.2517-6161.1978.tb01655.x>, Lenk (1988) <doi:10.1080/01621459.1988.10478625>, Tokdar (2007) <doi:10.1198/106186007X210206>, Tokdar (2010) <doi:10.1214/10-BA605>, and is further aligned with recent developments in Bayesian non-parametric modelling: see Gautier (2023) <https://boristheses.unibe.ch/4377/>, and Gautier (2025) &l [...truncated...]
License: GPL (>= 3)
Encoding: UTF-8
Biarch: true
Depends: R (>= 3.5.0), stats
Imports: DiceDesign, methods, mvnfast, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rstan (>= 2.18.1), GoFKernel, rstantools
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0), rstan (>= 2.18.1), StanHeaders (>= 2.21.0)
SystemRequirements: GNU make
Suggests: knitr, rmarkdown, tidyr, dplyr, ggplot2, ggpubr, viridis, MASS
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2025-09-01 13:38:28 UTC; agautier
Author: Athenais Gautier [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-05 20:50:02 UTC

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New package OptOTrials with initial version 1.0.2
Package: OptOTrials
Title: Optimal Two-Stage Designs for Ordered Categorical Outcomes
Version: 1.0.2
Date: 2025-08-17
Description: Functions to design and simulate optimal two-stage randomized controlled trials (RCTs) with ordered categorical outcomes, supporting rank-based tests and group-sequential decision rules. Methods build on classical and modern rank tests and two-stage/Group-Sequential designs, e.g., Park (2025) <doi: 10.1371/journal.pone.0318211>. Please see the package reference manual and vignettes for details.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: stats
NeedsCompilation: no
Packaged: 2025-09-01 09:24:41 UTC; ypark56
Author: Yeonhee Park [aut, cre], Yudi Wang [aut], Zhanpeng Xu [aut]
Maintainer: Yeonhee Park <yeonheepark@skku.edu>
Repository: CRAN
Date/Publication: 2025-09-05 20:40:02 UTC

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Package marquee updated to version 1.2.0 with previous version 1.1.1 dated 2025-08-27

Title: Markdown Parser and Renderer for R Graphics
Description: Provides the mean to parse and render markdown text with grid along with facilities to define the styling of the text.
Author: Thomas Lin Pedersen [aut, cre] , Martin Mitas [aut] , Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>

Diff between marquee versions 1.1.1 dated 2025-08-27 and 1.2.0 dated 2025-09-05

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New package LLMTranslate with initial version 0.1.3
Package: LLMTranslate
Title: 'shiny' App for TRAPD/ISPOR Survey Translation with LLMs
Version: 0.1.3
Description: A 'shiny' application to automate forward and back survey translation with optional reconciliation using large language models (LLMs). It follows the TRAPD (Translation, Review, Adjudication, Pretesting, Documentation) framework and ISPOR (International Society for Pharmacoeconomics and Outcomes Research) recommendations. See Harkness et al. (2010) <doi:10.1002/9780470609927.ch7> and Wild et al. (2005) <doi:10.1111/j.1524-4733.2005.04054.x>.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1)
Imports: shiny
Suggests: DT, readxl, writexl, openxlsx, httr2, jsonlite, glue, later, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2025-09-01 17:28:43 UTC; A2310316
Author: Jonas R. Kunst [aut, cre]
Maintainer: Jonas R. Kunst <jonas.r.kunst@bi.no>
Repository: CRAN
Date/Publication: 2025-09-05 21:00:16 UTC

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Package evolqg updated to version 0.3-6 with previous version 0.3-4 dated 2023-12-05

Title: Evolutionary Quantitative Genetics
Description: Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools. Melo D, Garcia G, Hubbe A, Assis A P, Marroig G. (2016) <doi:10.12688/f1000research.7082.3>.
Author: Diogo Melo [aut, cre] , Ana Paula Assis [aut], Edgar Zanella [ctb], Fabio Andrade Machado [aut] , Guilherme Garcia [aut], Alex Hubbe [rev] , Gabriel Marroig [ths]
Maintainer: Diogo Melo <diogro@gmail.com>

Diff between evolqg versions 0.3-4 dated 2023-12-05 and 0.3-6 dated 2025-09-05

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New package causalnet with initial version 0.1.0
Package: causalnet
Title: Directed Causal Network Enumeration and Simulation
Version: 0.1.0
Description: Enumerate orientation-consistent directed networks from an undirected or partially directed skeleton, detect feedback loops, summarize topology, and simulate node dynamics via stochastic differential equations.
License: GPL-3
URL: https://github.com/KyuriP/causalnet
BugReports: https://github.com/KyuriP/causalnet/issues
Encoding: UTF-8
VignetteBuilder: knitr
Imports: stats, ggplot2, tidyr, scales, cowplot
Suggests: testthat (>= 3.0.0), dplyr, knitr, rmarkdown
NeedsCompilation: no
Packaged: 2025-09-01 16:03:58 UTC; Kyuri1
Author: Kyuri Park [aut, cre]
Maintainer: Kyuri Park <kyurheep@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-05 21:00:10 UTC

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Package Spower updated to version 0.4.0 with previous version 0.3.1 dated 2025-07-17

Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis API for routine and customized simulation experimental designs. The package focuses exclusively on Monte Carlo simulation experiment variants of (expected) prospective power analyses, criterion analyses, compromise analyses, sensitivity analyses, and a priori/post-hoc analyses. The default simulation experiment functions defined within the package provide stochastic variants of the power analysis subroutines in G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>, along with various other parametric and non-parametric power analysis applications (e.g., mediation analyses) and support for Bayesian power analysis by way of Bayes factors or posterior probability evaluations. Additional functions for building empirical power curves, reanalyzing simulation information, and for increasing the precision of the resulting power estimates are also included, each of which utilize similar API structures.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

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Package SensIAT updated to version 0.3.0 with previous version 0.2.0 dated 2025-08-18

Title: Sensitivity Analysis for Irregular Assessment Times
Description: Sensitivity analysis for trials with irregular and informative assessment times, based on a new influence function-based, augmented inverse intensity-weighted estimator.
Author: Andrew Redd [aut, cre] , Yujing Gao [aut], Shu Yang [aut], Bonnie Smith [aut], Ravi Varadhan [aut], Agatha Mallett [ctb, ctr], Daniel Scharfstein [pdr, aut] , University of Utah [cph]
Maintainer: Andrew Redd <andrew.redd@hsc.utah.edu>

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Package merTools updated to version 0.6.3 with previous version 0.6.2 dated 2024-02-08

Title: Tools for Analyzing Mixed Effect Regression Models
Description: Provides methods for extracting results from mixed-effect model objects fit with the 'lme4' package. Allows construction of prediction intervals efficiently from large scale linear and generalized linear mixed-effects models. This method draws from the simulation framework used in the Gelman and Hill (2007) textbook: Data Analysis Using Regression and Multilevel/Hierarchical Models.
Author: Jared E. Knowles [aut, cre], Carl Frederick [aut], Alex Whitworth [ctb]
Maintainer: Jared E. Knowles <jared@civilytics.com>

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Package greenfeedr updated to version 1.3.1 with previous version 1.3.0 dated 2025-08-18

Title: Process and Report 'GreenFeed' Data
Description: Provides tools for downloading, processing, and reporting daily and finalized 'GreenFeed' data.
Author: Guillermo Martinez-Boggio [cre, aut, cph] , Meredith Harrison [ctb], Patrick Lutz [ctb]
Maintainer: Guillermo Martinez-Boggio <gmartinezboggio@ucdavis.edu>

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Package fairmetrics updated to version 1.0.5 with previous version 1.0.4 dated 2025-07-22

Title: Fairness Evaluation Metrics with Confidence Intervals for Binary Protected Attributes
Description: A collection of functions for computing fairness metrics for machine learning and statistical models, including confidence intervals for each metric. The package supports the evaluation of group-level fairness criterion commonly used in fairness research, particularly in healthcare for binary protected attributes. It is based on the overview of fairness in machine learning written by Gao et al (2024) <doi:10.48550/arXiv.2406.09307>.
Author: Jianhui Gao [aut] , Benjamin Smith [aut, cre] , Benson Chou [aut] , Jessica Gronsbell [aut]
Maintainer: Benjamin Smith <benyamin.smith@mail.utoronto.ca>

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Package shinyscholar updated to version 0.4.3 with previous version 0.4.2 dated 2025-06-01

Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is reproducible, can be saved and meets academic standards for attribution. Forked from 'wallace'. Code is split into modules that are loaded and linked together automatically and each call one function. Guidance pages explain modules to users and flexible logging informs them of any errors. Options enable asynchronous operations, viewing of source code, interactive maps and data tables. Use to create complex analytical applications, following best practices in open science and software development. Includes functions for automating repetitive development tasks and an example application at run_shinyscholar() that requires install.packages("shinyscholar", dependencies = TRUE). A guide to developing applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph], Tim Lucas [aut] , Jamie M. Kass [ctb], Gonzalo E. Pinilla-Buitrago [ctb], Andrea Paz [ctb], Bethany A. Johnson [ctb], Valentina Grisales-Betancur [ctb], Dean Attali [ctb], Matthew E. Aiello-Lammens [ctb], Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>

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Package kinesis updated to version 0.3.0 with previous version 0.2.1 dated 2025-07-15

Title: 'shiny' Applications for the 'tesselle' Packages
Description: A collection of 'shiny' applications for the 'tesselle' packages <https://www.tesselle.org/>. This package provides applications for archaeological data analysis and visualization. These mainly, but not exclusively, include applications for chronological modelling (e.g. matrix seriation, aoristic analysis) and count data analysis (e.g. diversity measures, compositional data analysis).
Author: Nicolas Frerebeau [aut, cre] , Brice Lebrun [art] , Universite Bordeaux Montaigne [fnd] , CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>

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Package important updated to version 0.2.0 with previous version 0.0.1 dated 2025-08-20

Title: Supervised Feature Selection
Description: Interfaces for choosing important predictors in supervised regression, classification, and censored regression models. Permuted importance scores (Biecek and Burzykowski (2021) <doi:10.1201/9780429027192>) can be computed for 'tidymodels' model fits.
Author: Max Kuhn [aut, cre] , Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>

Diff between important versions 0.0.1 dated 2025-08-20 and 0.2.0 dated 2025-09-05

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Package CohortGenerator updated to version 0.12.1 with previous version 0.12.0 dated 2025-07-31

Title: Cohort Generation for the OMOP Common Data Model
Description: Generate cohorts and subsets using an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database. Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Author: Anthony Sena [aut, cre], Jamie Gilbert [aut], Gowtham Rao [aut], Freddy Avila Cruz [aut], Martijn Schuemie [aut], Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>

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Package admix updated to version 2.5.1 with previous version 2.4.3 dated 2025-08-21

Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements techniques to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density; see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>, Patra and Sen (2016) <doi:10.1111/rssb.12148>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>. In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-sample contexts to test the unknown component density (see Milhaud, Pommeret, Salhi and Vandekerkhove (2022) <doi:10.1016/j.jspi.2021.05.010>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>). Finally, clustering of unknown [...truncated...]
Author: Xavier Milhaud [aut, cre], Pierre Vandekerkhove [ctb], Denys Pommeret [ctb], Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research@gmail.com>

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Package vvcanvas updated to version 0.0.6 with previous version 0.0.5 dated 2025-03-31

Title: 'Canvas' LMS API Integration
Description: Allow R users to interact with the 'Canvas' Learning Management System (LMS) API (see <https://canvas.instructure.com/doc/api/all_resources.html> for details). It provides a set of functions to access and manipulate course data, assignments, grades, users, and other resources available through the 'Canvas' API.
Author: Tomer Iwan [aut, cre], Niels Smits [ctb] , VU Analytics [cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>

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Package tokenizers.bpe updated to version 0.1.4 with previous version 0.1.3 dated 2023-09-15

Title: Byte Pair Encoding Text Tokenization
Description: Unsupervised text tokenizer focused on computational efficiency. Wraps the 'YouTokenToMe' library <https://github.com/VKCOM/YouTokenToMe> which is an implementation of fast Byte Pair Encoding (BPE) <https://aclanthology.org/P16-1162/>.
Author: Jan Wijffels [aut, cre, cph] , BNOSAC [cph] , VK.com [cph], Gregory Popovitch [ctb, cph] , The Abseil Authors [ctb, cph] , Ivan Belonogov [ctb, cph] )
Maintainer: Jan Wijffels <jwijffels@bnosac.be>

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Package tidysdm updated to version 1.0.3 with previous version 1.0.2 dated 2025-08-22

Title: Species Distribution Models with Tidymodels
Description: Fit species distribution models (SDMs) using the 'tidymodels' framework, which provides a standardised interface to define models and process their outputs. 'tidysdm' expands 'tidymodels' by providing methods for spatial objects, models and metrics specific to SDMs, as well as a number of specialised functions to process occurrences for contemporary and palaeo datasets. The full functionalities of the package are described in Leonardi et al. (2023) <doi:10.1101/2023.07.24.550358>.
Author: Michela Leonardi [aut], Margherita Colucci [aut], Andrea Vittorio Pozzi [aut], Eleanor M.L. Scerri [aut], Ben Tupper [ctb], Andrea Manica [aut, cre]
Maintainer: Andrea Manica <am315@cam.ac.uk>

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Package SAMtool updated to version 1.8.2 with previous version 1.8.1 dated 2025-04-28

Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>

Diff between SAMtool versions 1.8.1 dated 2025-04-28 and 1.8.2 dated 2025-09-05

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Package GHRexplore updated to version 0.2.0 with previous version 0.1.1 dated 2025-07-10

Title: Exploratory Analysis of Temporal and Spatio-Temporal Health Data
Description: A collection of commonly used visualizations of temporal and spatio-temporal health data including case counts, incidence rates, and covariates. The available plot types include time series, heatmaps, seasonality plots, maps and more. The package supports standard data transformations such as temporal and spatial aggregations, while offering extensive customization options for the resulting figures.
Author: Carles Mila [aut, cre] , Giovenale Moirano [aut] , Anna B. Kawiecki [aut] , Rachel Lowe [aut, cph]
Maintainer: Carles Mila <carles.milagarcia@bsc.es>

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Package speakeasyR updated to version 0.1.7 with previous version 0.1.6 dated 2025-08-28

Title: Fast and Robust Multi-Scale Graph Clustering
Description: A graph community detection algorithm that aims to be performant on large graphs and robust, returning consistent results across runs. SpeakEasy 2 (SE2), the underlying algorithm, is described in Chris Gaiteri, David R. Connell & Faraz A. Sultan et al. (2023) <doi:10.1186/s13059-023-03062-0>. The core algorithm is written in 'C', providing speed and keeping the memory requirements low. This implementation can take advantage of multiple computing cores without increasing memory usage. SE2 can detect community structure across scales, making it a good choice for biological data, which often has hierarchical structure. Graphs can be passed to the algorithm as adjacency matrices using base 'R' matrices, the 'Matrix' library, 'igraph' graphs, or any data that can be coerced into a matrix.
Author: David Connell [aut, cre, cph] , Chris Gaiteri [cph] , Gabor Csardi [cph, ctb] , Tamas Nepusz [cph, ctb] , Szabolcs Horvat [cph, ctb] , Vincent Traag [cph, ctb] , Fabio Zanini [cph, ctb] , Daniel Noom [cph, ctb] , The igraph development team [cph] , F [...truncated...]
Maintainer: David Connell <david32@dcon.addy.io>

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Package rnndescent updated to version 0.1.8 with previous version 0.1.6 dated 2024-05-14

Title: Nearest Neighbor Descent Method for Approximate Nearest Neighbors
Description: The Nearest Neighbor Descent method for finding approximate nearest neighbors by Dong and co-workers (2010) <doi:10.1145/1963405.1963487>. Based on the 'Python' package 'PyNNDescent' <https://github.com/lmcinnes/pynndescent>.
Author: James Melville [aut, cre, cph], Vitalie Spinu [ctb], Ralf Stubner [ctb]
Maintainer: James Melville <jlmelville@gmail.com>

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Package qqplotr updated to version 0.0.7 with previous version 0.0.6 dated 2023-01-25

Title: Quantile-Quantile Plot Extensions for 'ggplot2'
Description: Extensions of 'ggplot2' Q-Q plot functionalities.
Author: Alexandre Almeida [aut], Adam Loy [aut, cre], Heike Hofmann [aut]
Maintainer: Adam Loy <loyad01@gmail.com>

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Package odbc updated to version 1.6.3 with previous version 1.6.2 dated 2025-08-28

Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut], Hadley Wickham [aut, cre], Oliver Gjoneski [aut], Simon Couch [aut], lexicalunit [cph] , Google Inc. [cph] , Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>

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Package ndi updated to version 0.2.1 with previous version 0.1.5 dated 2024-01-23

Title: Neighborhood Deprivation Indices
Description: Computes various geospatial indices of socioeconomic deprivation and disparity in the United States. Some indices are considered "spatial" because they consider the values of neighboring (i.e., adjacent) census geographies in their computation, while other indices are "aspatial" because they only consider the value within each census geography. Two types of aspatial neighborhood deprivation indices (NDI) are available: including: (1) based on Messer et al. (2006) <doi:10.1007/s11524-006-9094-x> and (2) based on Andrews et al. (2020) <doi:10.1080/17445647.2020.1750066> and Slotman et al. (2022) <doi:10.1016/j.dib.2022.108002> who use variables chosen by Roux and Mair (2010) <doi:10.1111/j.1749-6632.2009.05333.x>. Both are a decomposition of multiple demographic characteristics from the U.S. Census Bureau American Community Survey 5-year estimates (ACS-5; 2006-2010 onward). Using data from the ACS-5 (2005-2009 onward), the package can also compute indices of racia [...truncated...]
Author: Ian D. Buller [aut, cre, cph] , NCI [cph, fnd]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>

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Package mvgam updated to version 1.1.593 with previous version 1.1.51 dated 2025-03-14

Title: Multivariate (Dynamic) Generalized Additive Models
Description: Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2023) <doi:10.1111/2041-210X.13974>.
Author: Nicholas J Clark [aut, cre] , KANK Karunarathna [ctb] , Sarah Heaps [ctb] , Scott Pease [ctb] , Matthijs Hollanders [ctb]
Maintainer: Nicholas J Clark <nicholas.j.clark1214@gmail.com>

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Package MKpower updated to version 1.1 with previous version 1.0 dated 2024-09-23

Title: Power Analysis and Sample Size Calculation
Description: Power analysis and sample size calculation for Welch and Hsu (Hedderich and Sachs (2018), ISBN:978-3-662-56657-2) t-tests including Monte-Carlo simulations of empirical power and type-I-error. Power and sample size calculation for Wilcoxon rank sum and signed rank tests via Monte-Carlo simulations. Power and sample size required for the evaluation of a diagnostic test(-system) (Flahault et al. (2005), <doi:10.1016/j.jclinepi.2004.12.009>; Dobbin and Simon (2007), <doi:10.1093/biostatistics/kxj036>) as well as for a single proportion (Fleiss et al. (2003), ISBN:978-0-471-52629-2; Piegorsch (2004), <doi:10.1016/j.csda.2003.10.002>; Thulin (2014), <doi:10.1214/14-ejs909>), comparing two negative binomial rates (Zhu and Lakkis (2014), <doi:10.1002/sim.5947>), ANCOVA (Shieh (2020), <doi:10.1007/s11336-019-09692-3>), reference ranges (Jennen-Steinmetz and Wellek (2005), <doi:10.1002/sim.2177>), multiple primary endpoints (Sozu et al. (2015), ISBN:978 [...truncated...]
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package metR updated to version 0.18.2 with previous version 0.18.1 dated 2025-05-13

Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing with meteorological data in the tidy data framework. Extends 'ggplot2' for better plotting of scalar and vector fields and provides commonly used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <eliocampitelli@gmail.com>

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Package hibayes updated to version 3.1.0 with previous version 3.0.3 dated 2024-02-20

Title: Individual-Level, Summary-Level and Single-Step Bayesian Regression Model
Description: A user-friendly tool to fit Bayesian regression models. It can fit 3 types of Bayesian models using individual-level, summary-level, and individual plus pedigree-level (single-step) data for both Genomic prediction/selection (GS) and Genome-Wide Association Study (GWAS), it was designed to estimate joint effects and genetic parameters for a complex trait, including: (1) fixed effects and coefficients of covariates, (2) environmental random effects, and its corresponding variance, (3) genetic variance, (4) residual variance, (5) heritability, (6) genomic estimated breeding values (GEBV) for both genotyped and non-genotyped individuals, (7) SNP effect size, (8) phenotype/genetic variance explained (PVE) for single or multiple SNPs, (9) posterior probability of association of the genomic window (WPPA), (10) posterior inclusive probability (PIP). The functions are not limited, we will keep on going in enriching it with more features. References: Lilin Yin et al. (2025) <doi:10.18637/jss [...truncated...]
Author: Lilin Yin [aut, cre, cph] , Haohao Zhang [aut, cph] , Xiaolei Liu [aut, cph]
Maintainer: Lilin Yin <ylilin@163.com>

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Package ggscidca updated to version 0.2.5 with previous version 0.2.3 dated 2024-05-19

Title: Plotting Decision Curve Analysis with Coloured Bars
Description: Decision curve analysis is a method for evaluating and comparing prediction models that incorporates clinical consequences, requires only the data set on which the models are tested, and can be applied to models that have either continuous or dichotomous results. The 'ggscidca' package adds coloured bars of discriminant relevance to the traditional decision curve. Improved practicality and aesthetics. This method was described by Balachandran VP (2015) <doi:10.1016/S1470-2045(14)71116-7>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>

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Package extrasteps updated to version 0.3.0 with previous version 0.1.0 dated 2024-10-03

Title: More Miscellaneous Steps for the 'recipes' Package
Description: Contains additional miscellaneous steps for the 'recipes' package. These steps are useful, but doesn't have a good home in other 'recipes' packages or its extensions.
Author: Emil Hvitfeldt [aut, cre]
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>

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Package bsts updated to version 0.9.11 with previous version 0.9.10 dated 2024-01-17

Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many other sources.
Author: Steven L. Scott [aut, cre]
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>

Diff between bsts versions 0.9.10 dated 2024-01-17 and 0.9.11 dated 2025-09-05

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Package beakr updated to version 0.4.4 with previous version 0.4.3 dated 2021-04-06

Title: A Minimalist Web Framework for R
Description: A minimalist web framework for developing application programming interfaces in R that provides a flexible framework for handling common HTTP-requests, errors, logging, and an ability to integrate any R code as server middle-ware.
Author: Hans Martin [aut], Jonathan Callahan [aut, cre]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>

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Package antitrust updated to version 0.99.29 with previous version 0.99.26 dated 2022-08-24

Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin [aut, cre], Michael Sandfort [aut], Shlok Goyal [ctb]
Maintainer: Charles Taragin <ctaragin+antitrustr@gmail.com>

Diff between antitrust versions 0.99.26 dated 2022-08-24 and 0.99.29 dated 2025-09-05

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More information about antitrust at CRAN
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Package RCreliability (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-12-10 0.1.0

Permanent link
Package rvif readmission to version 3.1 with previous version 3.0 dated 2025-07-29

Title: Collinearity Detection using Redefined Variance Inflation Factor and Graphical Methods
Description: The detection of troubling approximate collinearity in a multiple linear regression model is a classical problem in Econometrics. The objective of this package is to detect it using the variance inflation factor redefined and the scatterplot between the variance inflation factor and the coefficient of variation. For more details see Salmerón R., García C.B. and García J. (2018) <doi:10.1080/00949655.2018.1463376>, Salmerón, R., Rodríguez, A. and García C. (2020) <doi:10.1007/s00180-019-00922-x>, Salmerón, R., García, C.B, Rodríguez, A. and García, C. (2022) <doi:10.32614/RJ-2023-010>, Salmerón, R., García, C.B. and García, J. (2025) <doi:10.1007/s10614-024-10575-8> and Salmerón, R., García, C.B, García J. (2023, working paper) <doi:10.48550/arXiv.2005.02245>. You can also view the package vignette using 'browseVignettes("rvif")', the package website using 'browseURL(system.file("docs/index.html", package = "rvif"))' or version control on GitHub (<https: [...truncated...]
Author: R. Salmeron [aut, cre], C.B. Garcia [aut]
Maintainer: R. Salmeron <romansg@ugr.es>

This is a re-admission after prior archival of version 3.0 dated 2025-07-29

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Package patientProfilesVis updated to version 2.0.10 with previous version 2.0.9 dated 2024-06-18

Title: Visualization of Patient Profiles
Description: Creation of patient profile visualizations for exploration, diagnostic or monitoring purposes during a clinical trial. These static visualizations display a patient-specific overview of the evolution during the trial time frame of parameters of interest (as laboratory, ECG, vital signs), presence of adverse events, exposure to a treatment; associated with metadata patient information, as demography, concomitant medication. The visualizations can be tailored for specific domain(s) or endpoint(s) of interest. Visualizations are exported into patient profile report(s) or can be embedded in custom report(s).
Author: Laure Cougnaud [aut, cre], Margaux Faes [rev] , Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>

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Package MGDrivE readmission to version 1.6.2 with previous version 1.6.0 dated 2020-10-05

Title: Mosquito Gene Drive Explorer
Description: Provides a model designed to be a reliable testbed where various gene drive interventions for mosquito-borne diseases control. It is being developed to accommodate the use of various mosquito-specific gene drive systems within a population dynamics framework that allows migration of individuals between patches in landscape. Previous work developing the population dynamics can be found in Deredec et al. (2001) <doi:10.1073/pnas.1110717108> and Hancock & Godfray (2007) <doi:10.1186/1475-2875-6-98>, and extensions to accommodate CRISPR homing dynamics in Marshall et al. (2017) <doi:10.1038/s41598-017-02744-7>.
Author: Hector Manuel Sanchez Castellanos [aut, cre], Jared Bennett [aut], Sean Wu [aut], John M. Marshall [aut]
Maintainer: Hector Manuel Sanchez Castellanos <sanchez.hmsc@berkeley.edu>

This is a re-admission after prior archival of version 1.6.0 dated 2020-10-05

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Package eeptools updated to version 1.2.7 with previous version 1.2.5 dated 2023-06-01

Title: Convenience Functions for Education Data
Description: Collection of convenience functions to make working with administrative records easier and more consistent. Includes functions to clean strings, and identify cut points. Also includes three example data sets of administrative education records for learning how to process records with errors.
Author: Jason P. Becker [ctb], Jared E. Knowles [aut, cre]
Maintainer: Jared E. Knowles <jared@civilytics.com>

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Package ebnm updated to version 1.1-38 with previous version 1.1-2 dated 2023-10-12

Title: Solve the Empirical Bayes Normal Means Problem
Description: Provides simple, fast, and stable functions to fit the normal means model using empirical Bayes. For available models and details, see function ebnm(). Our JSS article, Willwerscheid, Carbonetto, and Stephens (2025) <doi:10.18637/jss.v114.i03>, provides a detailed introduction to the package.
Author: Jason Willwerscheid [aut], Matthew Stephens [aut], Peter Carbonetto [aut, cre], Andrew Goldstein [ctb], Yusha Liu [ctb]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>

Diff between ebnm versions 1.1-2 dated 2023-10-12 and 1.1-38 dated 2025-09-05

 ebnm-1.1-2/ebnm/inst/doc/ebnm.R                               |only
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 ebnm-1.1-38/ebnm/DESCRIPTION                                  |   17 -
 ebnm-1.1-38/ebnm/MD5                                          |   86 +++--
 ebnm-1.1-38/ebnm/NAMESPACE                                    |    3 
 ebnm-1.1-38/ebnm/R/check_fn.R                                 |only
 ebnm-1.1-38/ebnm/R/ebnm.R                                     |  159 +++++++---
 ebnm-1.1-38/ebnm/R/ebnm_fns.R                                 |   90 +++--
 ebnm-1.1-38/ebnm/R/ebnm_methods.R                             |   45 +-
 ebnm-1.1-38/ebnm/R/generalized_binary.R                       |   34 +-
 ebnm-1.1-38/ebnm/R/grid_selection.R                           |    2 
 ebnm-1.1-38/ebnm/R/infer_prior_family.R                       |    1 
 ebnm-1.1-38/ebnm/R/point_exponential.R                        |    1 
 ebnm-1.1-38/ebnm/R/point_laplace.R                            |    3 
 ebnm-1.1-38/ebnm/R/point_normal.R                             |    1 
 ebnm-1.1-38/ebnm/R/rebayes.R                                  |   13 
 ebnm-1.1-38/ebnm/R/workhorse_parametric.R                     |    7 
 ebnm-1.1-38/ebnm/build/partial.rdb                            |only
 ebnm-1.1-38/ebnm/build/vignette.rds                           |binary
 ebnm-1.1-38/ebnm/inst/CITATION                                |   35 +-
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 ebnm-1.1-38/ebnm/inst/doc/baseball.R                          |only
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 ebnm-1.1-38/ebnm/inst/doc/baseball.html                       |only
 ebnm-1.1-38/ebnm/inst/doc/extending_ebnm.R                    |only
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 ebnm-1.1-38/ebnm/inst/doc/shrink_intro.R                      |only
 ebnm-1.1-38/ebnm/inst/doc/shrink_intro.Rmd                    |only
 ebnm-1.1-38/ebnm/inst/doc/shrink_intro.html                   |only
 ebnm-1.1-38/ebnm/man/confint.ebnm.Rd                          |   13 
 ebnm-1.1-38/ebnm/man/ebnm.Rd                                  |   76 +++-
 ebnm-1.1-38/ebnm/man/ebnm_check_fn.Rd                         |only
 ebnm-1.1-38/ebnm/man/ebnm_generalized_binary.Rd               |   12 
 ebnm-1.1-38/ebnm/man/ebnm_normal.Rd                           |   13 
 ebnm-1.1-38/ebnm/man/ebnm_normal_scale_mixture.Rd             |   11 
 ebnm-1.1-38/ebnm/man/ebnm_npmle.Rd                            |   16 -
 ebnm-1.1-38/ebnm/man/ebnm_point_exponential.Rd                |   33 +-
 ebnm-1.1-38/ebnm/man/ebnm_point_laplace.Rd                    |   13 
 ebnm-1.1-38/ebnm/man/ebnm_point_mass.Rd                       |    6 
 ebnm-1.1-38/ebnm/man/ebnm_point_normal.Rd                     |   13 
 ebnm-1.1-38/ebnm/man/ebnm_unimodal.Rd                         |   11 
 ebnm-1.1-38/ebnm/man/ebnm_unimodal_nonnegative.Rd             |   11 
 ebnm-1.1-38/ebnm/man/ebnm_unimodal_nonpositive.Rd             |   11 
 ebnm-1.1-38/ebnm/man/ebnm_unimodal_symmetric.Rd               |   11 
 ebnm-1.1-38/ebnm/tests/testthat/test_optmethod.R              |  108 ++++--
 ebnm-1.1-38/ebnm/tests/testthat/test_point_mass.R             |    4 
 ebnm-1.1-38/ebnm/tests/testthat/test_prior_family_inference.R |    3 
 ebnm-1.1-38/ebnm/vignettes/baseball.Rmd                       |only
 ebnm-1.1-38/ebnm/vignettes/ebnm.bib                           |   18 +
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 54 files changed, 588 insertions(+), 292 deletions(-)

More information about ebnm at CRAN
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Package RVenn (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-07-18 1.1.0
2019-05-08 1.0.0

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New package minipdf with initial version 0.2.7
Package: minipdf
Title: PDF Document Creator
Version: 0.2.7
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Description: PDF is a standard file format for laying out text and images in documents. At its core, these documents are sequences of objects defined in plain text. This package allows for the creation of PDF documents at a very low level without any library or graphics device dependencies.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/coolbutuseless/minipdf
Depends: R (>= 4.1.0)
Imports: glue
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-08-31 09:38:56 UTC; mike
Author: Mike Cheng [aut, cre, cph]
Repository: CRAN
Date/Publication: 2025-09-05 11:40:02 UTC

More information about minipdf at CRAN
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New package mini007 with initial version 0.1.0
Package: mini007
Title: Lightweight Framework for Orchestrating Multi-Agent Large Language Models
Version: 0.1.0
Description: Provides tools for creating agents with persistent state using R6 classes <https://cran.r-project.org/package=R6> and the 'ellmer' package <https://cran.r-project.org/package=ellmer>. Tracks prompts, messages, and agent metadata for reproducible, multi-turn large language model sessions.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: checkmate (>= 2.3.1), cli (>= 3.6.5), R6 (>= 2.6.1), uuid (>= 1.2.0)
Suggests: ellmer
NeedsCompilation: no
Packaged: 2025-08-31 11:16:43 UTC; mohamedelfodilihaddaden
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-05 11:40:08 UTC

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New package econtools with initial version 0.1.0
Package: econtools
Title: Enrich and Analyze Sovereign-Level Economic Data
Version: 0.1.0
Description: Provides a consistent set of functions for enriching and analyzing sovereign-level economic data. Economists, data scientists, and financial professionals can use the package to add standardized identifiers, demographic and macroeconomic indicators, and derived metrics such as gross domestic product per capita or government expenditure shares.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1)
Imports: cli, curl, dplyr (>= 1.0.0), rlang, wbwdi, econid, imfweo
Suggests: testthat (>= 3.0.0)
URL: https://github.com/tidy-intelligence/r-econtools, https://tidy-intelligence.github.io/r-econtools/
BugReports: https://github.com/tidy-intelligence/r-econtools/issues
NeedsCompilation: no
Packaged: 2025-08-31 14:39:11 UTC; krise
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Repository: CRAN
Date/Publication: 2025-09-05 11:40:13 UTC

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New package connector.databricks with initial version 0.1.0
Package: connector.databricks
Title: Expand 'connector' Package for 'Databricks' Tables and Volumes
Version: 0.1.0
Description: Expands the 'connector' <https://github.com/NovoNordisk-OpenSource/connector> package and provides a convenient interface for accessing and interacting with 'Databricks' <https://www.databricks.com> volumes and tables directly from R.
License: Apache License (>= 2)
URL: https://novonordisk-opensource.github.io/connector.databricks/, https://github.com/NovoNordisk-OpenSource/connector.databricks
BugReports: https://github.com/NovoNordisk-OpenSource/connector.databricks/issues
Imports: arrow, brickster (>= 0.2.7), checkmate, cli, connector (>= 1.0.0), DBI, dbplyr, dplyr, fs, hms, odbc (>= 1.4.0), purrr, R6 (>= 2.4.0), rlang, withr, zephyr
Suggests: glue, knitr, mockery (>= 0.4.4), rmarkdown, testthat (>= 3.2.3), tibble, whirl (>= 0.3.0)
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2025-09-01 08:28:07 UTC; vlob
Author: Vladimir Obucina [aut, cre], Steffen Falgreen Larsen [aut], Aksel Thomsen [aut], Cervan Girard [aut], Oliver Lundsgaard [ctb], Skander Mulder [ctb], Novo Nordisk A/S [cph]
Maintainer: Vladimir Obucina <vlob@novonordisk.com>
Depends: R (>= 4.1.0)
Repository: CRAN
Date/Publication: 2025-09-05 12:00:02 UTC

More information about connector.databricks at CRAN
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Package covid19br (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-08-18 1.0.0
2023-10-15 0.1.8
2023-09-05 0.1.7
2023-07-04 0.1.6
2023-05-08 0.1.5
2022-03-30 0.1.4
2021-10-24 0.1.3
2021-10-17 0.1.3
2021-10-08 0.1.2
2020-11-24 0.1.1
2020-09-29 0.1.0

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Package zcurve updated to version 2.4.5 with previous version 2.4.4 dated 2025-08-20

Title: An Implementation of Z-Curves
Description: An implementation of z-curves - a method for estimating expected discovery and replicability rates on the bases of test-statistics of published studies. The package provides functions for fitting the density, EM, and censored EM version (Bartoš & Schimmack, 2022, <doi:10.15626/MP.2021.2720>; Schimmack & Bartoš, 2023, <doi: 10.1371/journal.pone.0290084>), as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>). Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects. See the aforementioned articles for more information about the z-curves, expected discovery and replicability rates, validation studies, and limitations.
Author: Frantisek Bartos [aut, cre], Ulrich Schimmack [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>

Diff between zcurve versions 2.4.4 dated 2025-08-20 and 2.4.5 dated 2025-09-05

 DESCRIPTION                  |    6 +++---
 MD5                          |    8 ++++----
 R/tools.R                    |    4 +++-
 build/partial.rdb            |binary
 tests/testthat/test-zcurve.R |    6 +++---
 5 files changed, 13 insertions(+), 11 deletions(-)

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Package tidymodels updated to version 1.4.0 with previous version 1.3.0 dated 2025-02-21

Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for modeling and statistical analysis that share the underlying design philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre] , Hadley Wickham [aut], Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>

Diff between tidymodels versions 1.3.0 dated 2025-02-21 and 1.4.0 dated 2025-09-05

 DESCRIPTION                                                   |   30 +-
 LICENSE                                                       |    2 
 MD5                                                           |   36 +-
 NAMESPACE                                                     |    2 
 NEWS.md                                                       |    8 
 R/attach.R                                                    |   28 +-
 R/conflicts.R                                                 |   44 +--
 R/emails.R                                                    |    9 
 R/imports.R                                                   |    1 
 R/tags.R                                                      |   23 +
 R/tidymodels_prefer.R                                         |  138 ++++++----
 R/update.R                                                    |   54 +++
 README.md                                                     |   18 -
 build/vignette.rds                                            |binary
 inst/doc/Tags.R                                               |    4 
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 inst/rmarkdown/templates/model-analysis/skeleton/skeleton.Rmd |   22 -
 man/tidymodels-package.Rd                                     |    2 
 vignettes/Tags.Rmd                                            |    7 
 19 files changed, 288 insertions(+), 147 deletions(-)

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