Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models
using the Template Model Builder ('TMB', Kristensen et al., 2016)
<doi:10.18637/jss.v070.i05>. The technical details of transformation models
are given in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. Likelihood
contributions of exact, randomly censored (left, right, interval) and
truncated observations are supported. The random effects are assumed to be
normally distributed on the scale of the transformation function, the
marginal likelihood is evaluated using the Laplace approximation, and the
gradients are calculated with automatic differentiation (Tamasi & Hothorn,
2021) <doi:10.32614/RJ-2021-075>. Penalized smooth shift terms can be
defined using the 'mgcv' notation. Additive mixed-effects transformation
models are described in Tamasi (2025) <doi:10.18637/jss.v114.i11>.
Author: Balint Tamasi [aut, cre] ,
Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi+tramME@gmail.com>
Diff between tramME versions 1.0.7 dated 2024-11-29 and 1.0.8 dated 2025-09-08
DESCRIPTION | 18 ++++++------ MD5 | 36 ++++++++++++------------ NEWS.md | 4 ++ R/LmME.R | 3 +- R/SurvregME.R | 3 +- R/models.R | 35 ++++++++++++++--------- build/vignette.rds |binary inst/CITATION | 43 ++++++++++++++++++----------- inst/doc/RJ-2021-075.pdf |binary inst/doc/mixed-effects-additive-models.pdf |binary inst/doc/tramME-JSS.pdf |binary man/BoxCoxME.Rd | 11 +++++-- man/ColrME.Rd | 11 +++++-- man/CoxphME.Rd | 11 +++++-- man/LehmannME.Rd | 7 ++++ man/LmME.Rd | 7 ++++ man/PolrME.Rd | 11 +++++-- man/SurvregME.Rd | 7 ++++ man/tramME.Rd | 4 ++ 19 files changed, 139 insertions(+), 72 deletions(-)
Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for
modeling and statistical analysis that share the underlying design
philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre] ,
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tidymodels versions 1.4.0 dated 2025-09-05 and 1.4.1 dated 2025-09-08
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 6 ++++-- R/attach.R | 2 +- README.md | 18 +++++++++--------- build/vignette.rds |binary 6 files changed, 24 insertions(+), 22 deletions(-)
Title: Compare Ordinal Endpoints Using Simulations
Description: Simultaneously evaluate multiple ordinal outcome measures. Applied data analysts in particular are faced with uncertainty in choosing appropriate statistical tests for ordinal data. The included 'shiny' application allows users to simulate outcomes given different ordinal data distributions.
Author: Pat Callahan [aut, cre, cph]
Maintainer: Pat Callahan <patricktcallahan18@gmail.com>
Diff between ordinalsimr versions 0.2.2 dated 2025-06-25 and 0.2.3 dated 2025-09-08
ordinalsimr-0.2.2/ordinalsimr/inst/app/www/favicon.ico |only ordinalsimr-0.2.3/ordinalsimr/DESCRIPTION | 6 - ordinalsimr-0.2.3/ordinalsimr/MD5 | 20 ++-- ordinalsimr-0.2.3/ordinalsimr/NEWS.md | 4 ordinalsimr-0.2.3/ordinalsimr/R/app_ui.R | 2 ordinalsimr-0.2.3/ordinalsimr/R/ordinal_tests.R | 2 ordinalsimr-0.2.3/ordinalsimr/README.md | 3 ordinalsimr-0.2.3/ordinalsimr/build/vignette.rds |binary ordinalsimr-0.2.3/ordinalsimr/inst/app/www/favicon.png |only ordinalsimr-0.2.3/ordinalsimr/inst/doc/coding-simulations.html | 46 +++++----- ordinalsimr-0.2.3/ordinalsimr/inst/hexsticker.R |only ordinalsimr-0.2.3/ordinalsimr/man/figures |only ordinalsimr-0.2.3/ordinalsimr/man/ordinalsimr-package.Rd | 2 13 files changed, 47 insertions(+), 38 deletions(-)
Title: Apply Normalization Methods to Multiplexed Images
Description: Implements methods to normalize multiplexed imaging data, including
statistical metrics and visualizations to quantify technical variation in
this data type. Reference for methods listed here: Harris, C., Wrobel, J.,
& Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging
Data. Journal of Open Source Software, 7(71), 4180,
<doi:10.21105/joss.04180>.
Author: Coleman Harris [aut, cre]
Maintainer: Coleman Harris <coleman.r.harris@vanderbilt.edu>
Diff between mxnorm versions 1.0.3 dated 2023-05-01 and 1.1.0 dated 2025-09-08
DESCRIPTION | 15 MD5 | 27 NEWS.md |only README.md | 30 build/vignette.rds |binary inst/doc/mxnorm-vignette.R | 2 inst/doc/mxnorm-vignette.html | 936 +++++++++++++++--------------- man/figures/README-mx_dens-1.png |binary man/figures/README-mx_misc-1.png |binary man/figures/README-mx_umap-1.png |binary man/figures/README-mx_umap_slide-1.png |binary man/figures/README-mx_var-1.png |binary tests/testthat/test-plot_mx_density.R | 6 tests/testthat/test-plot_mx_proportions.R | 2 tests/testthat/test-plot_mx_umap.R | 2 15 files changed, 520 insertions(+), 500 deletions(-)
Title: Multivariate Hypothesis Tests
Description: Multivariate hypothesis tests and confidence intervals...
Author: Hasan Bulut [aut, cre]
Maintainer: Hasan Bulut <hasan.bulut@omu.edu.tr>
Diff between MVTests versions 2.2.2 dated 2023-11-03 and 2.3.1 dated 2025-09-08
DESCRIPTION | 20 ++-- MD5 | 35 ++++--- NAMESPACE | 8 + R/Mhg.R |only R/RHT2.R | 98 ++++++++++---------- R/RobCat.R | 235 +++++++++++++++++++++++++------------------------- R/RobPer_CovTest.R |only R/Rob_CovTest.R |only R/RperT2.R | 109 +++++++++++------------ R/TR2.R | 97 ++++++++++---------- R/ccc.R |only R/rccc.R |only R/simRHT2.R | 111 +++++++++++------------ README.md |only man/Mhg.Rd |only man/RHT2.Rd | 9 - man/RobCat.Rd | 3 man/RobPer_CovTest.Rd |only man/Rob_CovTest.Rd |only man/RperT2.Rd | 6 - man/TR2.Rd | 6 - man/ccc.Rd |only man/rccc.Rd |only man/simRHT2.Rd | 5 - 24 files changed, 384 insertions(+), 358 deletions(-)
Title: Managing and Visualizing Brain Surface Data
Description: Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <http://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.
Author: Tim Schaefer [aut, cre]
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between fsbrain versions 0.5.5 dated 2024-02-03 and 0.5.6 dated 2025-09-08
DESCRIPTION | 10 MD5 | 735 +++--- NAMESPACE | 1 R/atlas.R | 422 +-- R/brain_igraph.R | 2 R/brainview_magick.R | 1056 ++++---- R/cbar.R | 1178 ++++----- R/cbar_magick.R | 618 ++--- R/coloredmesh.R | 1320 +++++----- R/fsdir_abstraction_group.R | 1150 ++++----- R/fsdir_abstraction_subject.R | 1704 ++++++------- R/helpers.R | 2448 ++++++++++---------- R/highlight.R | 590 ++-- R/morph_agg.R | 594 ++-- R/morph_atlas_agg.R | 1454 +++++------ R/morph_concat.R | 268 +- R/optdata.R | 1083 ++++---- R/rglactions.R | 672 ++--- R/seg_stats.R | 596 ++-- R/smooth.R | 1048 ++++---- R/spherical.R | 318 +- R/vis.R | 1960 ++++++++-------- R/vis_meshes.R | 940 +++---- R/vis_multiview.R | 1520 ++++++------ R/vis_surface_background.R | 8 R/vis_volume.R | 2 R/vis_volume_3d.R | 848 +++--- R/volume.R | 294 +- build/vignette.rds |binary inst/doc/fsbrain.R | 662 ++--- inst/doc/fsbrain.Rmd | 1476 ++++++------ inst/doc/fsbrain.html | 16 inst/doc/fsbrain_faq.R | 350 +- inst/doc/fsbrain_faq.html | 2 inst/doc/fsbrain_vol.R | 82 inst/doc/fsbrain_vol.Rmd | 270 +- inst/doc/fsbrain_vol.html | 10 inst/extdata/cube.ply | 58 inst/extdata/demographics.tsv | 16 inst/extdata/demographics_nohdr.tsv | 14 inst/extdata/subjects.txt | 8 man/alphablend.Rd | 58 man/annot.outline.Rd | 80 man/annot.outline.border.vertices.Rd | 62 man/apply.label.to.morphdata.Rd | 102 man/apply.labeldata.to.morphdata.Rd | 76 man/apply.transform.Rd | 38 man/arrange.brainview.images.Rd | 80 man/arrange.brainview.images.grid.Rd | 86 man/boxcoords.from.bbox.Rd | 40 man/brain.Rd | 40 man/brainview.sd.Rd | 76 man/brainview.si.Rd | 76 man/brainview.sr.Rd | 106 man/brainview.t4.Rd | 76 man/brainview.t9.Rd | 76 man/brainviews.Rd | 80 man/can.plot.colorbar.Rd | 40 man/can.plot.colorbar.from.coloredmeshes.Rd | 36 man/clip.data.Rd | 58 man/clip_fun.Rd | 58 man/cm.cbry.Rd | 28 man/cm.div.Rd | 34 man/cm.heat.Rd | 34 man/cm.qual.Rd | 34 man/cm.seq.Rd | 34 man/collayer.bg.Rd | 74 man/collayer.bg.atlas.Rd | 108 man/collayer.bg.meancurv.Rd | 96 man/collayer.bg.sulc.Rd | 96 man/collayer.from.annot.Rd | 74 man/collayer.from.annotdata.Rd | 66 man/collayer.from.mask.data.Rd | 78 man/collayer.from.morphlike.data.Rd | 84 man/collayers.merge.Rd | 62 man/coloredmesh.from.annot.Rd | 88 man/coloredmesh.from.color.Rd | 76 man/coloredmesh.from.label.Rd | 94 man/coloredmesh.from.mask.Rd | 104 man/coloredmesh.from.morph.native.Rd | 100 man/coloredmesh.from.morph.standard.Rd | 118 man/coloredmesh.from.morphdata.Rd | 88 man/coloredmesh.from.preloaded.data.Rd | 62 man/coloredmeshes.combined.data.range.Rd | 36 man/coloredmeshes.from.color.Rd | 88 man/coloredmeshes.get.md.Rd | 40 man/colorlist.brain.clusters.Rd | 34 man/colors.are.grayscale.Rd | 48 man/colors.have.transparency.Rd | 48 man/combine.colorbar.with.brainview.animation.Rd | 86 man/common.makecmap.range.Rd | 58 man/constant.pervertexdata.Rd | 38 man/cube3D.tris.Rd | 102 man/cubes3D.tris.Rd | 50 man/deepcopylist.long.Rd | 46 man/deg2rad.Rd | 24 man/delete_all_optional_data.Rd | 28 man/demo.Rd | 30 man/demographics.to.fsgd.file.Rd | 88 man/demographics.to.qdec.table.dat.Rd | 102 man/desaturate.Rd | 60 man/download_fsaverage.Rd | 34 man/download_fsaverage3.Rd | 40 man/download_fsaverage6.Rd |only man/download_optional_data.Rd | 28 man/download_optional_paper_data.Rd | 34 man/draw.colorbar.Rd | 2 man/eeg_coords.Rd | 48 man/ensure.fs.surface.Rd | 36 man/ensure.tmesh3d.Rd | 42 man/export.Rd | 154 - man/export.coloredmesh.ply.Rd | 50 man/extend_neighbors.Rd | 76 man/extract.volume.3D.Rd | 46 man/face.edges.Rd | 56 man/find.freesurferhome.Rd | 40 man/find.subjectsdir.of.Rd | 44 man/flc.Rd | 36 man/force.to.range.Rd | 50 man/fs.coloredmesh.Rd | 68 man/fs.home.Rd | 34 man/fs.surface.as.adjacencylist.Rd | 34 man/fs.surface.to.igraph.Rd | 52 man/fs.surface.to.tmesh3d.Rd | 34 man/fs.surface.vertex.neighbors.Rd | 74 man/fs.value.list.from.agg.res.Rd | 40 man/fsaverage.path.Rd | 40 man/fsbrain.renderable.Rd | 42 man/fsbrain.set.default.figsize.Rd | 46 man/fslong.subjects.detect.Rd | 30 man/fslong.subjects.finished.Rd | 52 man/fup.Rd | 42 man/gen.test.volume.Rd | 44 man/geod.patches.color.overlay.Rd | 82 man/geod.patches.color.overlay.singlehemi.Rd | 58 man/geod.patches.pervertexdata.Rd | 68 man/geod.patches.pervertexdata.singlehemi.Rd | 44 man/geod.vert.neighborhood.Rd | 86 man/geodesic.average.distance.Rd | 36 man/geodesic.ballstats.Rd | 50 man/geodesic.circles.Rd | 64 man/geodesic.dists.to.vertex.Rd | 38 man/geodesic.path.Rd | 70 man/get.rglstyle.Rd | 40 man/get.rglstyle.default.Rd | 30 man/get.rglstyle.edges.Rd | 30 man/get.rglstyle.glass.Rd | 30 man/get.rglstyle.glass2.Rd | 30 man/get.rglstyle.parameters.Rd | 40 man/get.rglstyle.semitransparent.Rd | 30 man/get.rglstyle.shiny.Rd | 30 man/get.slice.indices.Rd | 44 man/get.subject.class.Rd | 48 man/get.view.angle.names.Rd | 38 man/getIn.Rd | 58 man/get_optional_data_filepath.Rd | 38 man/group.agg.atlas.standard.Rd | 162 - man/group.data.to.array.Rd | 48 man/group.label.from.annot.Rd | 116 man/group.morph.agg.standard.Rd | 112 man/group.morph.agg.standard.vertex.Rd | 106 man/group.morph.standard.Rd | 138 - man/group.morph.standard.sf.Rd | 50 man/group.multimorph.agg.standard.Rd | 112 man/groupmorph.split.hemilist.Rd | 62 man/handle.rglactions.highlight.points.Rd | 44 man/hasIn.Rd | 48 man/hemi.lobe.labels.Rd | 64 man/hemilist.Rd | 70 man/hemilist.derive.hemi.Rd | 60 man/hemilist.from.prefixed.list.Rd | 70 man/hemilist.get.combined.data.Rd | 54 man/hemilist.unwrap.Rd | 62 man/hemilist.wrap.Rd | 62 man/hemlist.ensure.contains.Rd | 34 man/highlight.points.spheres.Rd | 48 man/highlight.vertices.on.subject.Rd | 168 - man/highlight.vertices.on.subject.spheres.Rd | 180 - man/highlight.vertices.spheres.Rd | 76 man/hull.retain.along.axis.Rd | 64 man/image.remap.color.Rd | 48 man/images.annotate.Rd | 48 man/images.dimmax.Rd | 36 man/images.rescale.to.max.canvas.Rd | 40 man/images.same.height.Rd | 40 man/images.same.width.Rd | 40 man/is.Triangles3D.Rd | 36 man/is.fs.coloredmesh.Rd | 34 man/is.fs.coloredvoxels.Rd | 34 man/is.fsbrain.Rd | 34 man/is.hemilist.Rd | 54 man/label.border.Rd | 80 man/label.colFn.Rd | 42 man/label.colFn.inv.Rd | 42 man/label.from.annotdata.Rd | 98 man/label.to.annot.Rd | 114 man/labeldata.from.mask.Rd | 52 man/limit_fun.Rd | 52 man/limit_fun_na.Rd | 58 man/limit_fun_na_inside.Rd | 58 man/list_optional_data.Rd | 28 man/magick.grid.Rd | 52 man/mesh.vertex.included.faces.Rd | 58 man/mesh.vertex.neighbors.Rd | 74 man/mkco.cluster.Rd | 34 man/mkco.div.Rd | 28 man/mkco.heat.Rd | 28 man/mkco.seq.Rd | 28 man/normalize.Rd | 36 man/numverts.lh.Rd | 34 man/numverts.rh.Rd | 34 man/path.colors.from.orientation.Rd | 40 man/path.slopes.Rd | 40 man/per.hemi.vertex.indices.Rd | 40 man/perform.na.mapping.Rd | 40 man/perform.rglactions.Rd | 42 man/pervertexdata.smoothgaussian.Rd | 90 man/pervertexdata.smoothnn.Rd | 80 man/pervertexdata.smoothnn.compute.fwhm.Rd | 66 man/pervertexdata.smoothnn.compute.numiter.Rd | 46 man/plot.fsbrain.colorbar.Rd | 40 man/pp.named.list.Rd | 36 man/principal.curvatures.Rd | 44 man/print.fs.coloredmesh.Rd | 32 man/print.fs.coloredvoxels.Rd | 32 man/print.fsbrain.Rd | 32 man/qc.for.group.Rd | 66 man/qc.from.segstats.table.Rd | 52 man/qc.from.segstats.tables.Rd | 42 man/qc.fslong.checkidenticaldata.Rd | 56 man/qc.vis.failcount.by.region.Rd | 62 man/qdec.table.filter.Rd | 50 man/qdec.table.skeleton.Rd | 74 man/rad2deg.Rd | 24 man/ras2vox_tkr.Rd | 52 man/read.colorcsv.Rd | 34 man/read.md.demographics.Rd | 110 man/read.md.subjects.Rd | 62 man/read.md.subjects.from.fsgd.Rd | 46 man/recycle.Rd | 46 man/regions.to.ignore.Rd | 80 man/report.on.demographics.Rd | 64 man/rgl.coord.lines.Rd | 42 man/rglactions.Rd | 56 man/rglactions.has.key.Rd | 36 man/rglactions.transform.Rd | 40 man/rglo.Rd | 34 man/rglot.Rd | 28 man/rglvoxels.Rd | 4 man/rotation.matrix.for.axis.rot.Rd | 52 man/scale.to.range.zero.one.Rd | 24 man/scale01.Rd | 38 man/shape.descriptor.names.Rd | 28 man/shape.descriptors.Rd | 44 man/shift.hemis.apart.Rd | 62 man/shift.hemis.rglactions.Rd | 40 man/sjd.demo.Rd | 40 man/sph2fs.Rd | 86 man/subject.annot.border.Rd | 74 man/subject.descriptor.geodesic.average.distance.Rd | 90 man/subject.filepath.any.Rd | 88 man/subject.filepath.morph.native.Rd | 74 man/subject.filepath.morph.standard.Rd | 86 man/subject.label.from.annot.Rd | 116 man/subject.lobes.Rd | 114 man/subject.num.verts.Rd | 62 man/surf.avg.vertexradius.Rd | 70 man/surf.center.fsaverage.Rd | 42 man/surf.metric.properties.Rd | 58 man/surf.radius.fsaverage.Rd | 48 man/surf.sphere.dist.Rd | 60 man/surf.sphere.gaussianweights.Rd | 72 man/surf.sphere.spatialfilter.Rd | 44 man/surface.curvatures.Rd | 40 man/surfs.props.Rd | 46 man/symmrange.Rd | 30 man/test.numerical.meandiff.Rd | 70 man/test.numerical.meandiff.paired.Rd | 64 man/test.numerical.meandiff.unpaired.Rd | 64 man/tmesh3d.to.fs.surface.Rd | 34 man/track.length.Rd | 36 man/vdata.split.by.hemi.Rd | 68 man/vertex.coords.Rd | 50 man/vertex.hemis.Rd | 52 man/vis.color.on.subject.Rd | 8 man/vis.coloredmesh.Rd | 40 man/vis.coloredmeshes.Rd | 2 man/vis.coloredmeshes.rotating.Rd | 98 man/vis.data.on.fsaverage.Rd | 160 - man/vis.data.on.group.native.Rd | 114 man/vis.data.on.group.standard.Rd | 114 man/vis.data.on.subject.Rd | 6 man/vis.dti.trk.Rd | 72 man/vis.export.from.coloredmeshes.Rd | 154 - man/vis.fs.surface.Rd | 74 man/vis.group.annot.Rd | 110 man/vis.group.coloredmeshes.Rd | 92 man/vis.group.morph.native.Rd | 114 man/vis.group.morph.standard.Rd | 120 man/vis.labeldata.on.subject.Rd | 6 man/vis.mask.on.subject.Rd | 6 man/vis.path.along.verts.Rd | 106 man/vis.paths.Rd | 38 man/vis.paths.along.verts.Rd | 44 man/vis.region.values.on.subject.Rd | 6 man/vis.renderable.Rd | 44 man/vis.rotated.coloredmeshes.Rd | 70 man/vis.subject.annot.Rd | 4 man/vis.subject.label.Rd | 6 man/vis.subject.morph.native.Rd | 6 man/vis.subject.morph.standard.Rd | 6 man/vis.subject.pre.Rd | 118 man/vis.symmetric.data.on.subject.Rd | 6 man/vislayout.from.coloredmeshes.Rd | 166 - man/vol.boundary.box.Rd | 60 man/vol.boundary.box.apply.Rd | 38 man/vol.boundary.mask.Rd | 44 man/vol.hull.Rd | 42 man/vol.imagestack.Rd | 60 man/vol.intensity.to.color.Rd | 56 man/vol.mask.from.segmentation.Rd | 38 man/vol.merge.Rd | 74 man/vol.overlay.colors.from.activation.Rd | 68 man/vol.overlay.colors.from.colortable.Rd | 56 man/vol.plane.axes.Rd | 36 man/vol.planes.Rd | 52 man/vol.slice.Rd | 86 man/vol.vox.from.crs.Rd | 58 man/volvis.lb.Rd | 122 man/volvis.lightbox.Rd | 104 man/volvis.voxels.Rd | 2 man/vox2ras_tkr.Rd | 54 man/wrapped.image.append.Rd | 44 man/write.group.morph.standard.Rd | 110 man/write.group.morph.standard.mf.Rd | 56 man/write.group.morph.standard.sf.Rd | 54 man/write.group.morph.standard.singlehemi.Rd | 52 man/write.region.aggregated.Rd | 86 man/write.region.values.fsaverage.Rd | 92 tests/testthat/teardown-cran.R | 26 tests/testthat/test-brain_igraph.R | 50 tests/testthat/test-brainview_magic.R | 52 tests/testthat/test-cbar.R | 48 tests/testthat/test-coloredmesh.R | 164 - tests/testthat/test-export.R | 36 tests/testthat/test-fsdir_abstraction_group.R | 278 +- tests/testthat/test-fsdir_abstraction_subject.R | 494 ++-- tests/testthat/test-geodesic.R | 180 - tests/testthat/test-helper_magick.R | 36 tests/testthat/test-helpers.R | 132 - tests/testthat/test-highlight.R | 470 +-- tests/testthat/test-mesh_helpers.R | 196 - tests/testthat/test-metadata_io.R | 185 - tests/testthat/test-morph_agg.R | 414 +-- tests/testthat/test-morph_concat.R | 148 - tests/testthat/test-r_vis_volume.R | 506 ++-- tests/testthat/test-rglactions.R | 114 tests/testthat/test-seg_stats.R | 58 tests/testthat/test-smooth.R | 170 - tests/testthat/test-spatial.R | 24 tests/testthat/test-u_vis_volume_3d.R | 446 +-- tests/testthat/test-vis.R | 714 ++--- tests/testthat/test-w_vis_group.R | 128 - tests/testthat/test-x_vis_meshes.R | 60 tests/testthat/test-z_vis_surface_background.R | 242 - tests/testthat_au.R | 12 tests/testthat_vz.R | 12 vignettes/fsbrain.Rmd | 1476 ++++++------ vignettes/fsbrain_vol.Rmd | 270 +- 369 files changed, 25226 insertions(+), 25094 deletions(-)
Title: Proportional Testing for Colocalisation Analysis
Description: Colocalisation analysis tests whether two traits share a causal
genetic variant in a specified genomic region. Proportional testing for
colocalisation has been previously proposed
[Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to
overcome barriers to its adoption. Its use is complementary to the fine-
mapping based colocalisation method in the 'coloc' package, and may be used in
particular to identify false "H3" conclusions in 'coloc'.
Author: Chris Wallace [aut, cre]
Maintainer: Chris Wallace <cew54@cam.ac.uk>
Diff between colocPropTest versions 0.9.1 dated 2024-06-11 and 0.9.2 dated 2025-09-08
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- build/vignette.rds |binary inst/doc/introduction.html | 30 +++++++++++++++--------------- 4 files changed, 25 insertions(+), 24 deletions(-)
Title: Multi-Context Colocalization Analysis for QTL and GWAS Studies
Description: A multi-task learning approach to variable selection regression with highly correlated predictors and sparse effects,
based on frequentist statistical inference. It provides statistical evidence to identify which subsets of predictors have non-zero
effects on which subsets of response variables, motivated and designed for colocalization analysis across genome-wide association studies (GWAS)
and quantitative trait loci (QTL) studies.
The ColocBoost model is described in Cao et. al. (2025) <doi:10.1101/2025.04.17.25326042>.
Author: Xuewei Cao [cre, aut, cph],
Haochen Sun [aut, cph],
Ru Feng [aut, cph],
Daniel Nachun [aut, cph],
Kushal Dey [aut, cph],
Gao Wang [aut, cph]
Maintainer: Xuewei Cao <xc2270@cumc.columbia.edu>
Diff between colocboost versions 1.0.4 dated 2025-05-02 and 1.0.5 dated 2025-09-08
DESCRIPTION | 10 MD5 | 52 +- R/colocboost.R | 32 - R/colocboost_assemble.R | 19 - R/colocboost_check_update_jk.R | 18 R/colocboost_inference.R | 55 ++ R/colocboost_init.R | 97 +++-- R/colocboost_one_causal.R | 3 R/colocboost_output.R | 2 R/colocboost_plot.R | 60 ++- R/colocboost_update.R | 26 + R/colocboost_utils.R | 60 ++- R/qval.R | 2 inst/doc/Individual_Level_Colocalization.html | 10 inst/doc/Interpret_ColocBoost_Output.html | 8 inst/doc/announcements.Rmd | 10 inst/doc/announcements.html | 16 inst/doc/installation.Rmd | 7 inst/doc/installation.html | 9 man/colocboost.Rd | 5 man/colocboost_plot.Rd | 4 tests/testthat/test_corner_cases.R | 2 tests/testthat/test_inference.R | 10 tests/testthat/test_model.R | 166 ++++++++ tests/testthat/test_utils.R | 487 +++++++++++++++++++++++++- vignettes/announcements.Rmd | 10 vignettes/installation.Rmd | 7 27 files changed, 1017 insertions(+), 170 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-24 0.0-6
2024-09-20 0.0-5
2024-06-27 0.0-4
2024-01-09 0.0-3
2023-09-26 0.0-2
2023-09-10 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-21 0.4.2
2024-07-20 0.4.1
2024-04-03 0.3.12
2022-09-01 0.3.10
2022-03-09 0.3.9
2022-02-27 0.3.8
2021-11-09 0.3.7
2021-09-22 0.3.5
2021-03-01 0.3.4
2020-10-22 0.3.2
2020-04-07 0.2.3
Title: Converting 'LaTeX' 'R Journal' Articles into 'RJ-web-articles'
Description: Articles in the 'R Journal' were first authored in 'LaTeX', which performs
admirably for 'PDF' files but is less than ideal for modern online interfaces.
The 'texor' package does all the transitional chores and conversions necessary
to move to the online versions.
Author: Abhishek Ulayil [aut, cre, cph] ,
Heather Turner [ctb] ,
Christophe Dervieux [ctb] ,
Mitchell O'Hara-Wild [ctb] ,
Dianne Cook [ctb] ,
Yinxiang Huang [ctb]
Maintainer: Abhishek Ulayil <perricoq@outlook.com>
Diff between texor versions 1.5.6 dated 2025-04-01 and 1.6.0 dated 2025-09-08
DESCRIPTION | 22 ++++++++++++---------- MD5 | 22 +++++++++++----------- NAMESPACE | 8 ++++++++ NEWS.md | 9 +++++++++ R/article-tools.R | 8 ++++---- R/stream-editor.R | 6 +----- R/string-tools.R | 36 ++++++++++++------------------------ build/vignette.rds |binary inst/bookdown_ref.lua | 13 +++++++------ inst/doc/introduction-to-texor.Rmd | 1 - inst/doc/introduction-to-texor.html | 1 - vignettes/introduction-to-texor.Rmd | 1 - 12 files changed, 64 insertions(+), 63 deletions(-)
Title: Data Analyses in Agriculture and Biology
Description: Contains several tools for nonlinear regression analyses and general data analysis in biology and agriculture. Contains also datasets for practicing and teaching purposes. Supports the blog: Onofri (2024) "Fixing the bridge between biologists and statisticians" <https://www.statforbiology.com> and the book: Onofri (2024) "Experimental Methods in Agriculture" <https://www.statforbiology.com/_statbookeng/>. The blog is a collection of short articles aimed at improving the efficiency of communication between biologists and statisticians, as pointed out in Kozak (2016) <doi:10.1590/0103-9016-2015-0399>, spreading a better awareness of the potential usefulness, beauty and limitations of biostatistic.
Author: Andrea Onofri [aut, cre]
Maintainer: Andrea Onofri <andrea.onofri@unipg.it>
Diff between statforbiology versions 0.9.9 dated 2024-10-21 and 1.0.2 dated 2025-09-08
DESCRIPTION | 9 ++-- MD5 | 22 +++++----- NAMESPACE | 4 - NEWS.md | 7 ++- R/SSLL.R | 14 +++--- R/boxcox.nls.R | 21 +++++---- R/getAgroData.R | 4 + R/gnlht.R | 114 +++++++++++++++++++++++++++-------------------------- R/plotRes.R |only R/plotnls.R | 52 +++++++++++++++++------- man/getAgroData.Rd | 5 +- man/plotRes.Rd |only man/plotnls.Rd | 3 - 13 files changed, 149 insertions(+), 106 deletions(-)
More information about statforbiology at CRAN
Permanent link
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.0.1-1 dated 2025-09-01 and 15.0.2-1 dated 2025-09-08
ChangeLog | 18 + DESCRIPTION | 8 MD5 | 27 - configure | 29 - configure.ac | 10 inst/NEWS.Rd | 15 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h.in | 5 inst/include/RcppArmadillo/rng/Alt_R_RNG.h | 49 +- inst/include/armadillo |only inst/include/current/armadillo_bits/arma_version.hpp | 2 inst/include/current/armadillo_bits/mul_gemm.hpp | 167 +++++++++- inst/include/current/armadillo_bits/mul_gemv.hpp | 83 ++++ inst/include/current/armadillo_bits/op_vectorise_meat.hpp | 24 + 15 files changed, 363 insertions(+), 74 deletions(-)
More information about PhoneValidator at CRAN
Permanent link
Title: Permutation Tests for Randomization Model
Description: Perform permutation-based hypothesis testing for randomized
experiments as suggested in Ludbrook & Dudley (1998) <doi:10.2307/2685470>
and Ernst (2004) <doi:10.1214/088342304000000396>, introduced in Pham et al.
(2022) <doi:10.1016/j.chemosphere.2022.136736>.
Author: Duy Nghia Pham [aut, cre] ,
Inna M. Sokolova [ths]
Maintainer: Duy Nghia Pham <nghiapham@yandex.com>
Diff between peramo versions 0.1.3 dated 2023-05-31 and 0.1.5 dated 2025-09-08
DESCRIPTION | 13 ++- MD5 | 38 +++++------ NAMESPACE | 56 ++++++++-------- R/XY.R | 8 +- R/peramo-package.R | 30 +-------- R/tw_complex.R | 83 +++++++++++++++++++++++-- R/zzz.R | 2 build/partial.rdb |binary man/AB.Rd | 82 ++++++++++++------------ man/XY.Rd | 84 ++++++++++++++----------- man/ctm.Rd | 46 ++++++------- man/diffcalc.Rd | 32 ++++----- man/ensulizole.Rd | 68 ++++++++++---------- man/nolesser.Rd | 32 ++++----- man/owl.Rd | 122 ++++++++++++++++++------------------ man/owlStat.Rd | 58 ++++++++--------- man/peramo-package.Rd | 58 ++++++++--------- man/tw_complex.Rd | 143 +++++++++++++++++++++---------------------- man/twl.Rd | 166 +++++++++++++++++++++++++------------------------- man/twlStat.Rd | 76 +++++++++++----------- 20 files changed, 632 insertions(+), 565 deletions(-)
Title: Gene-Level Variant Association Tests for Pedigree Data
Description: Gene-level variant association tests with disease status for pedigree data: kernel and burden association statistics.
Author: Schaid Daniel [aut],
Visconti Alessia [ctb],
Jason Sinnwell [aut, cre]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between pedgene versions 3.9 dated 2024-04-10 and 4.1 dated 2025-09-08
pedgene-3.9/pedgene/inst/LICENSE.note |only pedgene-4.1/pedgene/DESCRIPTION | 12 - pedgene-4.1/pedgene/MD5 | 26 +- pedgene-4.1/pedgene/NAMESPACE | 2 pedgene-4.1/pedgene/R/pedgene.R | 130 +++++++------- pedgene-4.1/pedgene/R/pedgene.stats.R | 5 pedgene-4.1/pedgene/build/vignette.rds |binary pedgene-4.1/pedgene/inst/COPYRIGHT |only pedgene-4.1/pedgene/inst/NEWS.Rd | 8 pedgene-4.1/pedgene/inst/doc/pedgene.pdf |binary pedgene-4.1/pedgene/tests/test.davies.R |only pedgene-4.1/pedgene/tests/test.davies.Rout.save |only pedgene-4.1/pedgene/tests/test.pedgene.R | 39 ++-- pedgene-4.1/pedgene/tests/test.pedgene.Rout.save | 54 +++-- pedgene-4.1/pedgene/tests/test.pedgene.expanded.R | 24 +- pedgene-4.1/pedgene/tests/test.pedgene.expanded.Rout.save | 55 +++-- 16 files changed, 200 insertions(+), 155 deletions(-)
Title: Green Index Quantification, Analysis and Visualization
Description: Quantification, analysis, and visualization of urban greenness within city networks using data from 'OpenStreetMap' <https://www.openstreetmap.org>.
Author: Sachit Mahajan [aut, cre]
Maintainer: Sachit Mahajan <sachitmahajan90@gmail.com>
Diff between greenR versions 0.0.1.3 dated 2025-06-12 and 0.0.1.4 dated 2025-09-08
greenR-0.0.1.3/greenR/vignettes/hexv.jpg |only greenR-0.0.1.3/greenR/vignettes/nearest_greenspace.png |only greenR-0.0.1.3/greenR/vignettes/zh_access.jpg |only greenR-0.0.1.4/greenR/DESCRIPTION | 6 - greenR-0.0.1.4/greenR/MD5 | 16 ++-- greenR-0.0.1.4/greenR/build/vignette.rds |binary greenR-0.0.1.4/greenR/inst/doc/introduction.html | 4 - greenR-0.0.1.4/greenR/inst/shiny/server.R | 56 +++++++++++++---- greenR-0.0.1.4/greenR/inst/shiny/ui.R | 10 ++- greenR-0.0.1.4/greenR/vignettes/EDU_mit_SGK.svg |only greenR-0.0.1.4/greenR/vignettes/access.jpg |binary 11 files changed, 64 insertions(+), 28 deletions(-)
Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich" method to enrich list-like R objects with new, relevant components. The current version has methods for enriching objects of class 'family', 'link-glm', 'lm', 'glm' and 'betareg'. The resulting objects preserve their class, so all methods associated with them still apply. The package also provides the 'enriched_glm' function that has the same interface as 'glm' but results in objects of class 'enriched_glm'. In addition to the usual components in a `glm` object, 'enriched_glm' objects carry an object-specific simulate method and functions to compute the scores, the observed and expected information matrix, the first-order bias, as well as model densities, probabilities, and quantiles at arbitrary parameter values. The package can also be used to produce customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between enrichwith versions 0.3.1 dated 2020-01-10 and 0.4.0 dated 2025-09-08
DESCRIPTION | 13 MD5 | 86 +-- NEWS.md | 117 ++--- R/data.R | 12 R/enrich-package.R | 8 R/enrich.betareg.R | 13 R/enrich.family.R | 19 R/enrich.glm.R | 28 - R/enrich.link-glm.R | 4 R/enrich.lm.R | 19 R/enriched_glm.R | 11 README.md | 20 build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST |only inst/doc/GLMs.R | 64 +- inst/doc/GLMs.Rmd | 16 inst/doc/GLMs.html | 650 +++++++++++++++++----------- inst/doc/bias.R | 18 inst/doc/bias.Rmd | 18 inst/doc/bias.html | 498 ++++++++++++++------- inst/doc/exponential_family.R | 6 inst/doc/exponential_family.Rmd | 2 inst/doc/exponential_family.html | 309 ++++++++----- inst/templates/template_compute_component.R | 1 man/coef.enriched_glm.Rd | 3 man/coef.enriched_lm.Rd | 3 man/create_enrichwith_skeleton.Rd | 11 man/endometrial.Rd | 18 man/enrich.family.Rd | 2 man/enrich.glm.Rd | 2 man/enriched_glm.Rd | 4 man/enrichwith.Rd | 12 man/get_enrichment_options.betareg.Rd | 3 man/get_enrichment_options.family.Rd | 3 man/get_enrichment_options.glm.Rd | 3 man/get_enrichment_options.link-glm.Rd | 3 man/get_enrichment_options.lm.Rd | 3 man/get_information_function.betareg.Rd | 2 man/get_information_function.glm.Rd | 2 man/get_information_function.lm.Rd | 2 vignettes/GLMs.Rmd | 16 vignettes/bias.Rmd | 18 vignettes/enrichwith.bib | 2 vignettes/exponential_family.Rmd | 2 45 files changed, 1248 insertions(+), 798 deletions(-)
Title: State-Space Mass-Balance Model for Marine Ecosystems
Description: Fits a state-space mass-balance model for marine ecosystems,
which implements dynamics derived from
'Ecopath with Ecosim' ('EwE') <https://ecopath.org/>
while fitting to time-series of fishery catch, biomass indices,
age-composition samples, and weight-at-age data.
'Ecostate' fits biological parameters (e.g., equilibrium mass)
and measurement parameters (e.g., catchability coefficients)
jointly with residual variation in process errors, and can include
Bayesian priors for parameters.
Author: James T. Thorson [aut, cre]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between ecostate versions 0.2.0 dated 2024-11-25 and 0.3.0 dated 2025-09-08
ecostate-0.2.0/ecostate/inst/doc/model_of_intermediate_complexity.R |only ecostate-0.2.0/ecostate/inst/doc/model_of_intermediate_complexity.Rmd |only ecostate-0.2.0/ecostate/inst/doc/model_of_intermediate_complexity.html |only ecostate-0.2.0/ecostate/vignettes/model_of_intermediate_complexity.Rmd |only ecostate-0.3.0/ecostate/DESCRIPTION | 17 - ecostate-0.3.0/ecostate/MD5 | 35 +-- ecostate-0.3.0/ecostate/NAMESPACE | 3 ecostate-0.3.0/ecostate/NEWS.md | 10 ecostate-0.3.0/ecostate/R/compute_nll.R | 111 ++++++---- ecostate-0.3.0/ecostate/R/data.R | 85 +++++++ ecostate-0.3.0/ecostate/R/ecostate.R | 37 ++- ecostate-0.3.0/ecostate/R/stanzas.R | 37 +-- ecostate-0.3.0/ecostate/README.md | 24 +- ecostate-0.3.0/ecostate/build/vignette.rds |binary ecostate-0.3.0/ecostate/data/gulf_of_alaska.rda |only ecostate-0.3.0/ecostate/inst/CITATION | 37 ++- ecostate-0.3.0/ecostate/inst/doc/model-description.R |only ecostate-0.3.0/ecostate/inst/doc/model-description.Rmd |only ecostate-0.3.0/ecostate/inst/doc/model-description.html |only ecostate-0.3.0/ecostate/man/compute_nll.Rd | 13 - ecostate-0.3.0/ecostate/man/eastern_bering_sea.Rd | 9 ecostate-0.3.0/ecostate/man/gulf_of_alaska.Rd |only ecostate-0.3.0/ecostate/vignettes/model-description.Rmd |only ecostate-0.3.0/ecostate/vignettes/refs.bib |only 24 files changed, 302 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-04 0.4.1
2024-02-26 0.4.0
2020-06-02 0.3.1
2018-07-03 0.3.0
2017-04-06 0.2.1
2017-03-31 0.2.0
Title: Model Context Protocol Servers and Clients
Description: Implements the Model Context Protocol (MCP). Users can start
'R'-based servers, serving functions as tools for large language
models to call before responding to the user in MCP-compatible apps
like 'Claude Desktop' and 'Claude Code', with options to run those
tools inside of interactive 'R' sessions. On the other end, when 'R'
is the client via the 'ellmer' package, users can register tools from
third-party MCP servers to integrate additional context into chats.
Author: Simon Couch [aut, cre] ,
Winston Chang [aut] ,
Charlie Gao [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between mcptools versions 0.1.0 dated 2025-07-18 and 0.1.1 dated 2025-09-08
DESCRIPTION | 41 +++++++++++++++++++++-------------------- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 8 ++++---- man/mcptools-package.Rd | 4 ++-- 5 files changed, 35 insertions(+), 30 deletions(-)
Title: Parsing, Computation, and Diagnostics for Greenhouse Gas
Measurements
Description: Parse static-chamber greenhouse gas measurement
files generated by a variety of instruments; compute flux rates using
multi-observation metadata; and generate diagnostic metrics and plots.
Designed to be easy to integrate into reproducible scientific workflows.
Author: Stephanie Wilson [cre] ,
Ben Bond-Lamberty [aut] ,
Genevieve Noyce [ctb] ,
Roberta Bittencourt Peixoto [ctb] ,
Patrick Megonigal [ctb] ,
Smithsonian Institution [cph, fnd]
Maintainer: Stephanie Wilson <sjw22120@gmail.com>
Diff between fluxfinder versions 1.2.1 dated 2025-09-02 and 1.2.2 dated 2025-09-08
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 +++---- R/metadata.R | 4 ++-- R/qaqc.R | 7 ++++++- man/ffi_metadata_match.Rd | 4 ++-- man/ffi_qaqc.Rd | 6 +++++- 7 files changed, 27 insertions(+), 19 deletions(-)
Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen [aut, cre],
Caitlin K. Frankish [aut],
Axelle Cordier [aut],
Florian G. Weller [aut]
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>
Diff between DEPONS2R versions 1.2.6 dated 2025-01-24 and 1.2.8 dated 2025-09-08
DESCRIPTION | 8 MD5 | 25 +- NAMESPACE | 8 R/a-misc.R | 6 R/calibrate_methods.R | 141 ++++++++++++++ R/raster-methods.R | 234 +++++++++++++++++++++++ R/ships_methods.R | 381 ++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary data/argosmetrics.RData |only man/DEPONS2R.Rd | 1 man/argosmetrics.Rd |only man/as.DeponsRaster.Rd |only man/as.raster.Rd |only man/calib_02.Rd |only man/interpolate.maps.Rd |only man/make.construction.traffic.Rd |only man/plot_calib02.Rd |only man/set.ship.type.Rd |only 18 files changed, 785 insertions(+), 19 deletions(-)
Title: Detecting UN Sustainable Development Goals in Text
Description: The United Nations' Sustainable Development Goals (SDGs) have become an important guideline for organisations to monitor and plan their contributions to social, economic, and environmental transformations. The 'text2sdg' package is an open-source analysis package that identifies SDGs in text using scientifically developed query systems, opening up the opportunity to monitor any type of text-based data, such as scientific output or corporate publications. For more information see Meier, Mata & Wulff (2025) <doi:10.32614/RJ-2024-005> and Wulff, Meier & Mata (2024) <doi:10.1007/s11625-024-01516-3>.
Author: Dirk U. Wulff [aut] ,
Dominik S. Meier [aut, cre] ,
Rui Mata [ctb]
Maintainer: Dominik S. Meier <dominikmeier@outlook.com>
Diff between text2sdg versions 1.1.1 dated 2023-03-17 and 1.1.2 dated 2025-09-08
DESCRIPTION | 19 +- MD5 | 47 +++--- NEWS.md | 6 R/aurora.R | 4 R/crosstab.R | 6 R/datasets.R | 8 - R/ensemble.R | 11 + R/plot.R | 2 R/sysdata.rda |binary R/text2sdg.R | 5 README.md | 14 -- build/vignette.rds |binary data/aurora_queries.RData |binary inst/CITATION |only inst/doc/text2sdg.R | 10 - inst/doc/text2sdg.Rmd | 6 inst/doc/text2sdg.html | 313 +++++++++++++++++++++++----------------------- man/aurora_queries.Rd | 2 man/detect_sdg.Rd | 6 man/elsevier_queries.Rd | 2 man/plot_sdg.Rd | 2 man/projects.Rd | 2 man/siris_queries.Rd | 2 man/text2sdg.Rd | 24 +++ vignettes/text2sdg.Rmd | 6 25 files changed, 264 insertions(+), 233 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. Also includes
a graphics device for creating drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between magick versions 2.8.7 dated 2025-06-06 and 2.9.0 dated 2025-09-08
DESCRIPTION | 17 +++---- MD5 | 106 +++++++++++++++++++++++----------------------- NAMESPACE | 2 NEWS | 4 + R/RcppExports.R | 4 + R/analysis.R | 4 - R/animation.R | 2 R/coder.R | 2 R/color.R | 28 ++++++++++-- R/composite.R | 6 +- R/defines.R | 2 R/edit.R | 10 ++-- R/effects.R | 2 R/fx.R | 4 - R/geometry.R | 2 R/index.R | 4 - R/options.R | 10 +++- R/paint.R | 8 +-- R/transform.R | 6 +- build/vignette.rds |binary cleanup | 1 inst/WORDLIST | 52 ++++++++-------------- inst/doc/intro.R | 2 inst/doc/intro.Rmd | 8 +-- inst/doc/intro.html | 110 ++++++++++++++++++++++++------------------------ man/analysis.Rd | 4 - man/animation.Rd | 4 - man/color.Rd | 27 +++++++++-- man/composite.Rd | 8 +-- man/config.Rd | 2 man/defines.Rd | 2 man/edges.Rd | 2 man/editing.Rd | 12 ++--- man/effects.Rd | 2 man/fx.Rd | 4 - man/geometry.Rd | 2 man/magick.Rd | 4 - man/options.Rd | 7 ++- man/painting.Rd | 8 +-- man/transform.Rd | 10 ++-- src/Makevars.win | 6 +- src/RcppExports.cpp | 13 +++++ src/attributes.cpp | 2 src/base.cpp | 2 src/color.cpp | 19 +++++++- src/convolve.cpp | 2 src/device.cpp | 6 +- src/edges.cpp | 2 src/edit.cpp | 2 src/magick_types.h | 1 src/options.cpp | 2 src/transformations.cpp | 2 tools/winlibs.R | 12 +++-- vignettes/intro.Rmd | 8 +-- 54 files changed, 326 insertions(+), 247 deletions(-)
Title: Discrete Statistical Distributions
Description: Implementation of new discrete statistical distributions. Each distribution includes the traditional functions as well as an additional function called the family function, which can be used to estimate parameters within the 'gamlss' framework.
Author: Freddy Hernandez-Barajas [aut, cre] ,
Fernando Marmolejo-Ramos [aut] ,
Olga Usuga-Manco [aut]
Maintainer: Freddy Hernandez-Barajas <fhernanb@unal.edu.co>
Diff between DiscreteDists versions 1.0.0 dated 2024-09-13 and 1.1.0 dated 2025-09-08
DiscreteDists-1.0.0/DiscreteDists/build |only DiscreteDists-1.1.0/DiscreteDists/DESCRIPTION | 29 - DiscreteDists-1.1.0/DiscreteDists/MD5 | 144 +++-- DiscreteDists-1.1.0/DiscreteDists/NAMESPACE | 47 + DiscreteDists-1.1.0/DiscreteDists/NEWS.md |only DiscreteDists-1.1.0/DiscreteDists/R/BerG.R |only DiscreteDists-1.1.0/DiscreteDists/R/COMPO.R |only DiscreteDists-1.1.0/DiscreteDists/R/COMPO2.R |only DiscreteDists-1.1.0/DiscreteDists/R/DBH.R | 16 DiscreteDists-1.1.0/DiscreteDists/R/DGEII.R | 13 DiscreteDists-1.1.0/DiscreteDists/R/DIKUM.R | 12 DiscreteDists-1.1.0/DiscreteDists/R/DLD.R | 14 DiscreteDists-1.1.0/DiscreteDists/R/DMOLBE.R | 55 + DiscreteDists-1.1.0/DiscreteDists/R/DPERKS.R |only DiscreteDists-1.1.0/DiscreteDists/R/DsPA.R |only DiscreteDists-1.1.0/DiscreteDists/R/GGEO.R | 11 DiscreteDists-1.1.0/DiscreteDists/R/HYPERPO.R | 18 DiscreteDists-1.1.0/DiscreteDists/R/HYPERPO2.R | 23 DiscreteDists-1.1.0/DiscreteDists/R/POISXL.R | 12 DiscreteDists-1.1.0/DiscreteDists/R/RcppExports.R | 125 ++++ DiscreteDists-1.1.0/DiscreteDists/R/dBerG.R |only DiscreteDists-1.1.0/DiscreteDists/R/dCOMPO.R |only DiscreteDists-1.1.0/DiscreteDists/R/dCOMPO2.R |only DiscreteDists-1.1.0/DiscreteDists/R/dDBH.R | 4 DiscreteDists-1.1.0/DiscreteDists/R/dDGEII.R | 4 DiscreteDists-1.1.0/DiscreteDists/R/dDIKUM.R | 8 DiscreteDists-1.1.0/DiscreteDists/R/dDLD.R | 5 DiscreteDists-1.1.0/DiscreteDists/R/dDMOLBE.R | 35 - 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Title: Canonical Associative Learning Models and their Representations
Description: Implementations of canonical associative learning models,
with tools to run experiment simulations, estimate model parameters,
and compare model representations. Experiments and results are
represented using S4 classes and methods.
Author: Victor Navarro [aut, cre, cph]
Maintainer: Victor Navarro <navarrov@cardiff.ac.uk>
Diff between calmr versions 0.7.0 dated 2025-05-11 and 0.8.1 dated 2025-09-08
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Title: Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann [aut, cre] ,
Jochen Fruend [aut] ,
Bernd Gruber [aut] ,
Tobias Bauer [ctb] ,
Stephen Beckett [ctb] ,
Mariano Devoto [ctb] ,
Gabriel M.F. Felix [ctb] ,
Jose M. Iriondo [ctb] ,
Tore Opsahl [ctb] ,
Rafael B.P. Pinheiro [ctb] ,
Rouven [...truncated...]
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>
Diff between bipartite versions 2.21 dated 2025-02-20 and 2.22 dated 2025-09-08
bipartite-2.21/bipartite/R/sortweb.r |only bipartite-2.22/bipartite/DESCRIPTION | 35 bipartite-2.22/bipartite/MD5 | 48 bipartite-2.22/bipartite/NAMESPACE | 2 bipartite-2.22/bipartite/R/plotweb.R | 1321 +++++----- bipartite-2.22/bipartite/R/plotweb_deprecated.R |only bipartite-2.22/bipartite/R/sortweb.R |only bipartite-2.22/bipartite/R/versionlog.R | 2 bipartite-2.22/bipartite/build/partial.rdb |binary bipartite-2.22/bipartite/build/vignette.rds |binary bipartite-2.22/bipartite/inst/doc/Intro2bipartite.R | 116 bipartite-2.22/bipartite/inst/doc/Intro2bipartite.Rnw | 142 - bipartite-2.22/bipartite/inst/doc/Intro2bipartite.pdf |binary bipartite-2.22/bipartite/inst/doc/PlottingWithBipartite.R |only bipartite-2.22/bipartite/inst/doc/PlottingWithBipartite.Rmd |only bipartite-2.22/bipartite/inst/doc/PlottingWithBipartite.html |only bipartite-2.22/bipartite/man/bipartite-package.Rd | 11 bipartite-2.22/bipartite/man/networklevel.Rd | 1 bipartite-2.22/bipartite/man/plotweb.Rd | 267 +- bipartite-2.22/bipartite/man/plotweb_deprecated.Rd |only bipartite-2.22/bipartite/man/sortweb.Rd | 31 bipartite-2.22/bipartite/vignettes/Intro2bipartite-concordance.tex |only bipartite-2.22/bipartite/vignettes/Intro2bipartite.Rnw | 142 - bipartite-2.22/bipartite/vignettes/PlottingWithBipartite.Rmd |only bipartite-2.22/bipartite/vignettes/bipartite.bib | 51 bipartite-2.22/bipartite/vignettes/figures/ScreenshotSmall1976LibreOffice.png |only bipartite-2.22/bipartite/vignettes/figures/ScreenshotSmall1976long.png |only bipartite-2.22/bipartite/vignettes/figures/Small1976plot.png |only bipartite-2.22/bipartite/vignettes/figures/motten1982_plotweb.pdf |binary bipartite-2.22/bipartite/vignettes/figures/motten1982_plotweb_old.pdf |only bipartite-2.22/bipartite/vignettes/figures/twocolumn-betweenPlot-1.pdf |binary bipartite-2.22/bipartite/vignettes/small1976.csv |only 32 files changed, 1284 insertions(+), 885 deletions(-)
Title: Wrapper for SQL Server bcp Utility
Description: Provides functions to utilize a command line utility that does bulk inserts and exports from SQL Server databases.
Author: Thomas Roh [aut, cre]
Maintainer: Thomas Roh <thomas.roh@delveds.com>
Diff between bcputility versions 0.4.3 dated 2024-05-08 and 0.4.6 dated 2025-09-08
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NEWS.md | 9 +++++++++ R/bcp.R | 9 +++++++-- README.md | 36 +++++++++++++++++++++++++++++++++--- inst |only man/bcpImport.Rd | 6 +++++- man/figures/logo.png |binary man/makeConnectArgs.Rd | 3 ++- tests/a-init-db.R | 2 +- 10 files changed, 71 insertions(+), 21 deletions(-)
Title: Estimators and Plots for Gamma and Pareto Tail Detection
Description: Estimators for two functionals used to detect Gamma, Pareto or Lognormal distributions, as well as distributions exhibiting similar tail behavior, as introduced by Iwashita and Klar (2023) <doi:10.1111/stan.12316> and
Klar (2024) <doi:10.1080/00031305.2024.2413081>.
One of these functionals, g, originally proposed by Asmussen and Lehtomaa (2017) <doi:10.3390/risks5010010>, distinguishes between log-convex and log-concave tail behavior.
Furthermore the characterization of the lognormal distribution is based on the work of Mosimann (1970) <doi:10.2307/2284599>.
The package also includes methods for visualizing these estimators and their associated confidence intervals across various threshold values.
Author: Bernhard Klar [aut, cre],
Lucas Iglesias [aut]
Maintainer: Bernhard Klar <Bernhard.Klar@kit.edu>
Diff between tailplots versions 0.1.0 dated 2025-04-18 and 0.1.1 dated 2025-09-08
tailplots-0.1.0/tailplots/inst |only tailplots-0.1.1/tailplots/DESCRIPTION | 16 tailplots-0.1.1/tailplots/LICENSE | 4 tailplots-0.1.1/tailplots/MD5 | 36 +- tailplots-0.1.1/tailplots/NAMESPACE | 26 - tailplots-0.1.1/tailplots/R/RcppExports.R |only tailplots-0.1.1/tailplots/R/gamma_estimators.R | 148 +------- tailplots-0.1.1/tailplots/R/gamma_tailplot.R | 385 +++++++++++----------- tailplots-0.1.1/tailplots/R/lnorm_estimators.R |only tailplots-0.1.1/tailplots/R/lnorm_tailplot.R |only tailplots-0.1.1/tailplots/R/pareto_estimators.R | 224 +----------- tailplots-0.1.1/tailplots/R/pareto_tailplot.R | 398 +++++++++++------------ tailplots-0.1.1/tailplots/R/zzz.R |only tailplots-0.1.1/tailplots/README.md |only tailplots-0.1.1/tailplots/build/partial.rdb |binary tailplots-0.1.1/tailplots/man/gamma_tail.Rd | 231 ++++++------- tailplots-0.1.1/tailplots/man/gamma_tailplot.Rd | 96 ++--- tailplots-0.1.1/tailplots/man/lnorm_tail.Rd |only tailplots-0.1.1/tailplots/man/lnorm_tailplot.Rd |only tailplots-0.1.1/tailplots/man/pareto_tail.Rd | 253 +++++++------- tailplots-0.1.1/tailplots/man/pareto_tailplot.Rd | 94 ++--- tailplots-0.1.1/tailplots/src |only 22 files changed, 814 insertions(+), 1097 deletions(-)
Title: Rule-Based Conformance Checking of Business Process Event Data
Description: Check compliance of event-data from (business) processes with respect to specified rules. Rules supported are of three types: frequency (activities that should (not) happen x number of times), order (succession between activities) and exclusiveness (and and exclusive choice between activities).
Author: Gert Janssenswillen [aut, cre],
Gerard van Hulzen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between processcheckR versions 0.1.4 dated 2022-10-03 and 0.1.5 dated 2025-09-08
DESCRIPTION | 9 -- MD5 | 26 +++--- R/contains.R | 1 R/processcheckR.R | 1 README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/processcheckr.R | 4 inst/doc/processcheckr.html | 181 +++++++++++++++++++++----------------------- man/absent.Rd | 4 man/contains.Rd | 1 man/contains_between.Rd | 4 man/contains_exactly.Rd | 4 man/processcheckR.Rd | 1 14 files changed, 115 insertions(+), 122 deletions(-)
Title: Multiple Change Point
Description: Nonparametric approach to estimate the location of block boundaries (change-points) of
non-overlapping blocks in a random symmetric matrix which consists of random variables whose
distribution changes from block to block.
BRAULT Vincent, OUADAH Sarah, SANSONNET Laure and LEVY-LEDUC Celine (2017) <doi:10.1016/j.jmva.2017.12.005>.
Author: Vincent Brault [cre, aut] ,
Cougoulat Glenn [ctb],
Sarah Ouadah [ctb],
Laure Sansonnet [ctb]
Maintainer: Vincent Brault <vincent.brault@univ-grenoble-alpes.fr>
Diff between MuChPoint versions 0.6.3 dated 2022-04-08 and 0.6.4 dated 2025-09-08
DESCRIPTION | 31 ++++++----- MD5 | 20 +++---- NAMESPACE | 24 +++++++++ R/MuChPoint.R | 52 +++----------------- R/MuChPoint_Class.R | 122 ++++++++++++++++++++++++++++------------------- R/RcppExports.R | 2 man/Compute_Cn1n2.Rd | 2 man/MuChPoint-proc.Rd | 5 + man/plot-MuChPoint.Rd | 5 + man/summary-MuChPoint.Rd | 3 - src/MuChPoint_cpp.cpp | 2 11 files changed, 145 insertions(+), 123 deletions(-)
Title: Animated Biplots
Description: Create animated biplots that enables dynamic visualisation of temporal or sequential changes in multivariate data by animating a single biplot across the levels of a time variable. It builds on objects from the 'biplotEZ' package, Lubbe S, le Roux N, Nienkemper-Swanepoel J, Ganey R, Buys R, Adams Z, Manefeldt P (2024) <doi:10.32614/CRAN.package.biplotEZ>, allowing users to create animated biplots that reveal how both samples and variables evolve over time.
Author: Raeesa Ganey [aut, cre, cph] ,
Johane Nienkemper-Swanepoel [aut, cph]
Maintainer: Raeesa Ganey <raeesa.ganey@wits.ac.za>
Diff between moveEZ versions 1.1.0 dated 2025-08-22 and 1.1.1 dated 2025-09-08
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/globals.R | 3 +- R/plot.R | 72 ++++++++++++++++++++++++++------------------------- inst/doc/moveEZ.html | 10 +++---- man/moveplot.Rd | 12 +++++++- 6 files changed, 64 insertions(+), 49 deletions(-)
Title: 'LuaJIT' Scripting
Description: An interface to 'LuaJIT' <https://luajit.org>, a just-in-time
compiler for the 'Lua' scripting language <https://www.lua.org>. Allows
users to run 'Lua' code from 'R'.
Author: Mike Pall [aut, cph] ,
Lua.org, PUC-Rio [cph] ,
Nicholas Davies [cre, ctb, cph] ,
Scott Lembcke, Howling Moon Software [ctb, cph]
Maintainer: Nicholas Davies <nicholas.davies@lshtm.ac.uk>
Diff between luajr versions 0.1.9 dated 2025-04-30 and 0.2.0 dated 2025-09-08
luajr-0.1.9/luajr/inst/doc/luajr-module.R |only luajr-0.1.9/luajr/inst/doc/luajr-module.Rmd |only luajr-0.1.9/luajr/inst/doc/luajr-module.html |only luajr-0.1.9/luajr/inst/include/luajr_conf.h |only luajr-0.1.9/luajr/inst/include/luajr_lauxlib.h |only luajr-0.1.9/luajr/inst/include/luajr_lua.h |only luajr-0.1.9/luajr/inst/include/luajr_luajit.h |only luajr-0.1.9/luajr/inst/include/luajr_lualib.h |only luajr-0.1.9/luajr/inst/module |only luajr-0.1.9/luajr/tests/testthat/test-lua_func.R |only luajr-0.1.9/luajr/vignettes/luajr-module.Rmd |only luajr-0.2.0/luajr/DESCRIPTION | 6 luajr-0.2.0/luajr/MD5 | 78 ++++----- luajr-0.2.0/luajr/NAMESPACE | 5 luajr-0.2.0/luajr/NEWS.md | 28 ++- luajr-0.2.0/luajr/R/lua_func.R | 30 ++- luajr-0.2.0/luajr/R/lua_mode.R | 2 luajr-0.2.0/luajr/R/lua_module.R |only luajr-0.2.0/luajr/R/luajr-package.R | 8 luajr-0.2.0/luajr/R/zzz.R | 4 luajr-0.2.0/luajr/build/vignette.rds |binary luajr-0.2.0/luajr/inst/CITATION | 6 luajr-0.2.0/luajr/inst/Lua |only luajr-0.2.0/luajr/inst/doc/luajr.R | 27 +++ luajr-0.2.0/luajr/inst/doc/luajr.Rmd | 148 +++++++++++------ luajr-0.2.0/luajr/inst/doc/luajr.html | 195 ++++++++++++++--------- luajr-0.2.0/luajr/inst/doc/modules.R |only luajr-0.2.0/luajr/inst/doc/modules.Rmd |only luajr-0.2.0/luajr/inst/doc/modules.html |only luajr-0.2.0/luajr/inst/doc/objects.R |only luajr-0.2.0/luajr/inst/doc/objects.Rmd |only luajr-0.2.0/luajr/inst/doc/objects.html |only luajr-0.2.0/luajr/inst/include/luajr.h | 6 luajr-0.2.0/luajr/inst/include/luajr_funcs.h | 5 luajr-0.2.0/luajr/man/lua_func.Rd | 21 ++ luajr-0.2.0/luajr/man/lua_module.Rd |only luajr-0.2.0/luajr/man/lua_profile.Rd | 2 luajr-0.2.0/luajr/man/luajr-package.Rd | 7 luajr-0.2.0/luajr/src/module.cpp |only luajr-0.2.0/luajr/src/push_to.cpp | 11 + luajr-0.2.0/luajr/src/registry_entry.cpp | 23 ++ luajr-0.2.0/luajr/src/registry_entry.h | 16 + luajr-0.2.0/luajr/src/run_func.cpp | 76 ++++---- luajr-0.2.0/luajr/src/setup.cpp | 3 luajr-0.2.0/luajr/src/shared.h | 21 ++ luajr-0.2.0/luajr/src/state.cpp | 3 luajr-0.2.0/luajr/tests/testthat/test-func.R |only luajr-0.2.0/luajr/tests/testthat/test-module.R |only luajr-0.2.0/luajr/vignettes/luajr.Rmd | 148 +++++++++++------ luajr-0.2.0/luajr/vignettes/modules.Rmd |only luajr-0.2.0/luajr/vignettes/objects.Rmd |only 51 files changed, 579 insertions(+), 300 deletions(-)
Title: Performance Spectrum Miner for Event Data
Description: Compute detailed and aggregated performance spectrum for event data. The detailed performance spectrum describes the event data in terms of segments, where the performance of each segment is measured and plotted for any occurrences of this segment over time and can be classified, e.g., regarding the overall population. The aggregated performance spectrum visualises the amount of cases of particular performance over time. Denisov, V., Fahland, D., & van der Aalst, W. M. P. (2018) <doi:10.1007/978-3-319-98648-7_9>.
Author: Greg Van Houdt [aut],
Gert Janssenswillen [ctb, cre],
Gerard van Hulzen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between psmineR versions 0.1.0 dated 2022-10-10 and 0.1.1 dated 2025-09-08
DESCRIPTION | 13 +++++++------ LICENSE | 2 +- MD5 | 29 +++++++++++++++++------------ R/plot.R | 4 ++-- R/ps_aggregated.R | 4 ++-- R/ps_detailed.R | 4 ++-- R/psmineR.R | 2 +- README.md | 11 ----------- build/partial.rdb |binary build/vignette.rds |only inst |only man/plot.Rd | 2 +- man/ps_aggregated.Rd | 4 ++-- man/ps_detailed.Rd | 4 ++-- man/psmineR.Rd | 1 - vignettes |only 16 files changed, 37 insertions(+), 43 deletions(-)
Title: Numerical Association Rule Mining using Population-Based
Nature-Inspired Algorithms
Description: Framework is devoted to mining numerical association rules through the
utilization of nature-inspired algorithms for optimization. Drawing inspiration
from the 'NiaARM' 'Python' and the 'NiaARM' 'Julia' packages, this repository
introduces the capability to perform numerical association rule mining in
the R programming language.
Fister Jr., Iglesias, Galvez, Del Ser, Osaba and Fister (2018) <doi:10.1007/978-3-030-03493-1_9>.
Author: Iztok Jr. Fister [aut, cre, cph] ,
Gerlinde Emsenhuber [aut] ,
Jan Hendrik Pluemer [aut]
Maintainer: Iztok Jr. Fister <iztok@iztok.space>
Diff between niarules versions 0.2.0 dated 2025-02-20 and 0.3.0 dated 2025-09-08
DESCRIPTION | 29 ++++++++++-------- MD5 | 45 +++++++++++++++++++++++----- NAMESPACE | 33 +++++++++++++++++++-- R/RcppExports.R |only R/build_coral_plots.R |only R/coral_plot_visualization.R |only R/de.R | 4 ++ R/evaluate.R | 13 ++++++++ R/output.R | 7 ++++ R/parse_rules.R |only R/pso.R |only R/visualization |only R/zzz.R |only README.md | 47 ++++++++++++++++++++++++++++++ build |only inst/extdata/abalone_rules.csv |only man/build_coral_plots.Rd |only man/build_layout_cpp.Rd |only man/differential_evolution.Rd | 5 +++ man/evaluate.Rd | 12 +++++++ man/figures |only man/parse_rules.Rd |only man/parse_rules_cpp.Rd |only man/particle_swarm_optimization.Rd |only man/render_coral_rgl.Rd |only src |only tests/testthat/test-build-coral-layout.R |only tests/testthat/test-parse-rules.R |only tests/testthat/test-render-coral-layout.R |only 29 files changed, 172 insertions(+), 23 deletions(-)
Title: R6-Based ML Learners for 'mlexperiments'
Description: Enhances 'mlexperiments'
<https://CRAN.R-project.org/package=mlexperiments> with additional
machine learning ('ML') learners. The package provides R6-based
learners for the following algorithms: 'glmnet'
<https://CRAN.R-project.org/package=glmnet>, 'ranger'
<https://CRAN.R-project.org/package=ranger>, 'xgboost'
<https://CRAN.R-project.org/package=xgboost>, and 'lightgbm'
<https://CRAN.R-project.org/package=lightgbm>. These can be used
directly with the 'mlexperiments' R package.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mllrnrs versions 0.0.5 dated 2025-03-05 and 0.0.6 dated 2025-09-08
mllrnrs-0.0.5/mllrnrs/tests/testthat/test-glmnet_binary.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-glmnet_multiclass.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-glmnet_regression.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-lightgbm_binary.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-lightgbm_multiclass.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-lightgbm_regression.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-ranger_binary.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-ranger_multiclass.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-ranger_regression.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-xgboost_binary.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-xgboost_multiclass.R |only mllrnrs-0.0.5/mllrnrs/tests/testthat/test-xgboost_regression.R |only mllrnrs-0.0.6/mllrnrs/DESCRIPTION | 14 mllrnrs-0.0.6/mllrnrs/MD5 | 137 +-- mllrnrs-0.0.6/mllrnrs/NAMESPACE | 19 mllrnrs-0.0.6/mllrnrs/R/learner_glmnet.R | 4 mllrnrs-0.0.6/mllrnrs/R/learner_lightgbm.R | 4 mllrnrs-0.0.6/mllrnrs/R/learner_ranger.R | 14 mllrnrs-0.0.6/mllrnrs/R/learner_xgboost.R | 4 mllrnrs-0.0.6/mllrnrs/R/zzz.R | 58 - mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_binary.R | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_binary.html | 25 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.R | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.html | 35 - mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_regression.R | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_regression.html | 17 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_glmnet_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.R | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.html | 23 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.R | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.html | 35 - mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.R | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.html | 17 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_binary.R | 22 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_binary.html | 25 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_binary.qmd | 22 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.R | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.html | 35 - mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_regression.R | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_regression.html | 17 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_ranger_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_binary.R | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_binary.html | 23 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.R | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.html | 35 - mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_regression.R | 14 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_regression.html | 17 mllrnrs-0.0.6/mllrnrs/inst/doc/mllrnrs_xgboost_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/man/LearnerGlmnet.Rd | 296 ++++---- mllrnrs-0.0.6/mllrnrs/man/LearnerLightgbm.Rd | 342 ++++----- mllrnrs-0.0.6/mllrnrs/man/LearnerRanger.Rd | 298 ++++---- mllrnrs-0.0.6/mllrnrs/man/LearnerXgboost.Rd | 344 +++++----- mllrnrs-0.0.6/mllrnrs/tests/testthat.R | 30 mllrnrs-0.0.6/mllrnrs/tests/testthat/test-binary.R |only mllrnrs-0.0.6/mllrnrs/tests/testthat/test-lints.R | 26 mllrnrs-0.0.6/mllrnrs/tests/testthat/test-multiclass.R |only mllrnrs-0.0.6/mllrnrs/tests/testthat/test-regression.R |only mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_glmnet_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_glmnet_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_glmnet_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_lightgbm_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_lightgbm_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_lightgbm_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_ranger_binary.qmd | 22 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_ranger_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_ranger_regression.qmd | 14 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_xgboost_binary.qmd | 20 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_xgboost_multiclass.qmd | 32 mllrnrs-0.0.6/mllrnrs/vignettes/mllrnrs_xgboost_regression.qmd | 14 77 files changed, 1413 insertions(+), 1279 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data, geostatistics, and spatial statistics. The major
methods
include Gaussian spatial process prediction (known as Kriging), cubic and thin plate splines, and compactly supported
covariance functions for large data sets. The spline and spatial process
methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance function parameters by cross
validation and also by maximum likelihood. For spatial process prediction
there is an easy to use function that also estimates the correlation
scale (range parameter). A major feature is that any covariance function
implemented in R and following a simple format can be used for
spatial prediction. As included are fast approximations for prediction
and conditional simulation for larger data sets.
There are also many useful functions for plotting
and working with spatial data as images. This package also con [...truncated...]
Author: Douglas Nychka [aut, cre],
Reinhard Furrer [aut],
John Paige [aut],
Stephan Sain [aut],
Florian Gerber [aut],
Matthew Iverson [aut],
Rider Johnson [aut]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>
Diff between fields versions 16.3.1 dated 2025-03-08 and 17.1 dated 2025-09-08
fields-16.3.1/fields/R/addMarginsGridList.R |only fields-16.3.1/fields/R/makePredictionGrid.R |only fields-17.1/fields/DESCRIPTION | 32 - fields-17.1/fields/MD5 | 133 +++--- fields-17.1/fields/NAMESPACE | 2 fields-17.1/fields/R/Matern.R | 17 fields-17.1/fields/R/Mines.colors.R |only fields-17.1/fields/R/approximateCovariance2D.R |only fields-17.1/fields/R/augmentPredictionGrid.R |only fields-17.1/fields/R/bplot.family.R | 6 fields-17.1/fields/R/circulantEmbedding.R | 5 fields-17.1/fields/R/circulantEmbeddingSetup.R | 58 +- fields-17.1/fields/R/colorBar.R | 27 + fields-17.1/fields/R/divMap.R |only fields-17.1/fields/R/interp.surface.FFT.R | 13 fields-17.1/fields/R/mKrig.R | 13 fields-17.1/fields/R/mKrigFastPredict.R | 90 ++-- fields-17.1/fields/R/mKrigFastPredictSetup.R | 41 +- fields-17.1/fields/R/offGridWeights.R | 61 ++- fields-17.1/fields/R/offGridWeights1D.R | 6 fields-17.1/fields/R/offGridWeights2D.R | 46 +- fields-17.1/fields/R/plotMatrix.R | 6 fields-17.1/fields/R/predictSurface.family.R | 33 - fields-17.1/fields/R/predictSurface.fastTps.R |only fields-17.1/fields/R/predictSurface.mKrig.R | 59 +-- fields-17.1/fields/R/simLocal.spatialProcess.R | 274 +++++++------- fields-17.1/fields/R/spatialProcess.R | 13 fields-17.1/fields/R/spatialProcessSetDefaults.R | 18 fields-17.1/fields/R/stationaryImageCov.R |only fields-17.1/fields/R/summary.spatialProcess.R | 4 fields-17.1/fields/R/test.for.zero.R | 9 fields-17.1/fields/R/unrollZGrid.R | 3 fields-17.1/fields/data/CO2.rda |binary fields-17.1/fields/data/COmonthlyMet.rda |binary fields-17.1/fields/data/LENSExample.rda |only fields-17.1/fields/data/NorthAmericanRainfall.rda |binary fields-17.1/fields/data/NorthAmericanRainfall2.rda |binary fields-17.1/fields/data/PRISMelevation.rda |binary fields-17.1/fields/data/RCMexample.rda |binary fields-17.1/fields/data/RMelevation.rda |binary fields-17.1/fields/data/US.dat.rda |binary fields-17.1/fields/data/WorldBankCO2.rda |binary fields-17.1/fields/data/datalist | 1 fields-17.1/fields/data/glacier.rda |binary fields-17.1/fields/data/lennon.rda |binary fields-17.1/fields/data/ozone2.rda |binary fields-17.1/fields/data/rat.diet.rda |binary fields-17.1/fields/data/world.dat.rda |binary fields-17.1/fields/man/Exponential.Rd | 10 fields-17.1/fields/man/FORTRAN.internal.Rd | 8 fields-17.1/fields/man/LENSExample.Rd |only fields-17.1/fields/man/Tps.Rd | 4 fields-17.1/fields/man/bplot.xy.Rd | 5 fields-17.1/fields/man/fields.tests.Rd | 7 fields-17.1/fields/man/image.cov.Rd | 95 ++-- fields-17.1/fields/man/imagePlot.Rd | 60 ++- fields-17.1/fields/man/mKrig.Rd | 7 fields-17.1/fields/man/offGridWeights.Rd | 88 ++-- fields-17.1/fields/man/predictSurface.Rd | 22 - fields-17.1/fields/man/sim.Krig.Rd | 207 ++++------ fields-17.1/fields/man/sim.rf.Rd | 73 ++- fields-17.1/fields/man/spatialProcess.Rd | 34 + fields-17.1/fields/man/tim.colors.Rd | 61 ++- fields-17.1/fields/man/vgram.Rd | 12 fields-17.1/fields/src/Makevars |only fields-17.1/fields/src/fieldsF77Code.f | 14 fields-17.1/fields/src/init.c | 9 fields-17.1/fields/tests/Likelihood.test.R | 2 fields-17.1/fields/tests/offGridWeights.test.R | 8 fields-17.1/fields/tests/offGridWeights.test.Rout.save | 33 + fields-17.1/fields/tests/offGridWeightsNEW.test.Rout.save | 162 +------- fields-17.1/fields/tests/offGridWeightsNew.test.R | 56 +- fields-17.1/fields/tests/testO3LocalExample.R |only fields-17.1/fields/tests/testO3LocalExample.Rout.save |only 74 files changed, 1097 insertions(+), 850 deletions(-)
Title: Distributional Instrumental Variable (DIV) Model
Description: Distributional instrumental variable (DIV) model
for estimation of the interventional distribution of the outcome Y under a
do intervention on the treatment X. Instruments, predictors and targets can
be univariate or multivariate. Functionality includes estimation of the (conditional)
interventional mean and quantiles, as well as sampling from the fitted (conditional)
interventional distribution.
Author: Anastasiia Holovchak [aut, cre, ctb],
Sorawit Saengkyongam [aut, ctb],
Nicolai Meinshausen [aut, ctb],
Xinwei Shen [aut, ctb]
Maintainer: Anastasiia Holovchak <anastasiia.holovchak@stat.math.ethz.ch>
This is a re-admission after prior archival of version 0.1.2 dated 2025-06-27
Diff between DistributionIV versions 0.1.2 dated 2025-06-27 and 0.1.3 dated 2025-09-08
DESCRIPTION | 18 ++--- MD5 | 24 ++++--- NAMESPACE | 1 NEWS.md | 24 +++++-- R/device.R | 13 +--- R/divfit.R | 120 +++++++++++++++++++------------------ R/energyloss.R | 12 ++- R/energylossbeta.R | 7 +- R/nnmodel.R | 58 +++++++++--------- R/predict.DIV.R | 84 ++++++++++++++------------ R/zzz.R | 5 - inst |only tests/testthat/helper_torch.R |only tests/testthat/test-predict.DIV.R | 121 +++++++++++++++++++++++--------------- 14 files changed, 274 insertions(+), 213 deletions(-)
More information about DistributionIV at CRAN
Permanent link
Title: 'DEXi' Decision Tree Analysis and Visualization
Description: Provides a versatile toolkit for analyzing and visualizing 'DEXi' (Decision EXpert for education)
decision trees, facilitating multi-criteria decision analysis directly within R. Users can
read .dxi files, manipulate decision trees, and evaluate various scenarios. It supports sensitivity
analysis through Monte Carlo simulations, one-at-a-time approaches, and variance-based
methods, helping to discern the impact of input variations. Additionally, it includes functionalities
for generating sampling plans and an array of visualization options for decision trees and
analysis results. A distinctive feature is the synoptic table plot, aiding in the efficient
comparison of scenarios. Whether for in-depth decision modeling or sensitivity analysis, this
package stands as a comprehensive solution. Definition of sensitivity analyses available in
Carpani, Bergez and Monod (2012) <doi:10.1016/j.envsoft.2011.10.002> and detailed description of the package soon available in
Alaphilippe et al. ( [...truncated...]
Author: Roland Allart [aut],
Jacques-Eric Bergez [aut] ,
Marta Carpani [aut],
Herve Monod [aut] ,
Aude Alaphilippe [ctb] ,
Nicolas Cavan [ctb, cre],
INRAE [cph] )
Maintainer: Nicolas Cavan <nicolas.cavan@inrae.fr>
Diff between dexisensitivity versions 1.0.1 dated 2024-10-29 and 1.0.2 dated 2025-09-08
DESCRIPTION | 19 ++++++++++--------- MD5 | 20 ++++++++++---------- NEWS.md | 18 +++++++++++------- R/create_tree.R | 2 +- R/data.R | 2 +- build/partial.rdb |binary man/dexifruits_v1.Rd | 2 +- man/dexisensitivity-package.Rd | 2 +- tests/testthat/Rplots.pdf |binary tests/testthat/test-create_tree.R | 7 +++++-- tests/testthat/test-option.R | 2 ++ 11 files changed, 42 insertions(+), 32 deletions(-)
More information about dexisensitivity at CRAN
Permanent link
Title: Simple, Consistent Wrappers for Common String Operations
Description: A consistent, simple and easy to use set of wrappers around
the fantastic 'stringi' package. All function and argument names (and
positions) are consistent, all functions deal with "NA"'s and zero
length vectors in the same way, and the output from one function is
easy to feed into the input of another.
Author: Hadley Wickham [aut, cre, cph],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between stringr versions 1.5.1 dated 2023-11-14 and 1.5.2 dated 2025-09-08
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 4 R/replace.R | 2 R/split.R | 2 build/vignette.rds |binary inst/doc/from-base.R | 2 inst/doc/from-base.html | 245 ++++++++++++++++---------------------- inst/doc/regular-expressions.R | 8 - inst/doc/regular-expressions.html | 3 inst/doc/stringr.html | 3 man/str_glue.Rd | 4 man/str_replace.Rd | 2 man/str_split.Rd | 2 14 files changed, 143 insertions(+), 168 deletions(-)
Title: A Modern K-Means (MKMeans) Clustering Algorithm
Description: It's a Modern K-Means clustering algorithm which works for data of any number of dimensions, has no limit with the number of clusters expected, offers both methods with and without initial cluster centers, and can start with any initial cluster centers for the method with initial cluster centers.
Author: Yarong Yang [aut, cre],
Nader Ebrahimi [ctb],
Yoram Rubin [ctb],
Jacob Zhang [ctb]
Maintainer: Yarong Yang <Yi.YA_yaya@hotmail.com>
Diff between MKMeans versions 3.3 dated 2025-08-26 and 3.4.4 dated 2025-09-08
DESCRIPTION | 12 +- MD5 | 12 +- NAMESPACE | 3 R/MKMeans.R | 211 +++++++++++++++++++++++++++++++++++++++---------- man/MKMean-class.Rd | 4 man/MKMeans-package.Rd | 71 +++++++++------- man/MKMeans.Rd | 63 ++++++++------ 7 files changed, 264 insertions(+), 112 deletions(-)
Title: 'BLAS' and 'LAPACK' Routines for Native R Matrices and
'big.matrix' Objects
Description: Provides arithmetic functions for R matrix and 'big.matrix' objects as well as functions for QR factorization, Cholesky factorization, General eigenvalue, and Singular value decomposition (SVD). A method matrix multiplication and an arithmetic method -for matrix addition, matrix difference- allows for mixed type operation -a matrix class object and a big.matrix class object- and pure type operation for two big.matrix class objects.
Author: Frederic Bertrand [cre, ctb] ,
Michael J. Kane [aut],
Bryan Lewis [aut],
John W. Emerson [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between bigalgebra versions 2.0.0 dated 2025-08-20 and 2.0.2 dated 2025-09-08
DESCRIPTION | 12 +++---- MD5 | 19 ++++++------ NEWS.md | 8 ++++- R/bigalgebra.R | 64 +++++++++++++++++++++-------------------- README.md | 1 inst/_pkgdown.yml |only man/dgeev.Rd | 6 +-- src/R_init_bigalgebra.c | 3 + src/bigalgebra.cpp | 40 ++++++++++++++++++++++++- src/bigalgebra.h | 1 tests/testthat/test-wrappers.R | 47 ++++++++++++++++++++++++++++++ 11 files changed, 150 insertions(+), 51 deletions(-)
Title: Procedures Based on Item Response Theory Models for the
Development of Short Test Forms
Description: Implement different Item Response Theory (IRT) based procedures for the development of static short test forms (STFs) from a test. Two main procedures are considered, specifically the typical IRT-based procedure for the development of STF, and a recently introduced procedure (Epifania, Anselmi & Robusto, 2022 <doi:10.1007/978-3-031-27781-8_7>).
The procedures differ in how the most informative items are selected for the inclusion in the STF, either by considering their item information functions without considering any specific level of the latent trait (typical procedure) or by considering their informativeness with respect to specific levels of the latent trait, denoted as theta targets (the newly introduced procedure). Regarding the latter procedure, three methods are implemented for the definition of the theta targets: (i) theta targets are defined by segmenting the latent trait in equal intervals and considering the midpoint of each interval (equal interval procedure, ei [...truncated...]
Author: Ottavia M. Epifania [aut, cre],
Pasquale Anselmi [ctb],
Egidio Robusto [ctb]
Maintainer: Ottavia M. Epifania <ottavia.epifania@unipd.it>
Diff between shortIRT versions 0.1.3 dated 2024-02-16 and 0.1.4 dated 2025-09-08
shortIRT-0.1.3/shortIRT/man/bp.Rd |only shortIRT-0.1.4/shortIRT/DESCRIPTION | 26 +++++++++---- shortIRT-0.1.4/shortIRT/MD5 | 20 +++++----- shortIRT-0.1.4/shortIRT/NAMESPACE | 2 - shortIRT-0.1.4/shortIRT/NEWS.md | 8 +--- shortIRT-0.1.4/shortIRT/R/bp.R | 5 +- shortIRT-0.1.4/shortIRT/R/eip.R | 2 - shortIRT-0.1.4/shortIRT/R/uip.R | 2 - shortIRT-0.1.4/shortIRT/man/bench.Rd |only shortIRT-0.1.4/shortIRT/tests/testthat/test-bp.R | 2 - shortIRT-0.1.4/shortIRT/tests/testthat/test-change_names.R | 2 - shortIRT-0.1.4/shortIRT/tests/testthat/test-diff_theta.R | 3 - 12 files changed, 40 insertions(+), 32 deletions(-)
Title: Allocate Samples Among Strata
Description: Functions for the design process of survey sampling, with specific tools for multi-wave and multi-phase designs. Perform optimum allocation using Neyman (1934) <doi:10.2307/2342192> or Wright (2012) <doi:10.1080/00031305.2012.733679> allocation, split strata based on quantiles or values of known variables, randomly select samples from strata, allocate sampling waves iteratively, and organize a complex survey design. Also includes a Shiny application for observing the effects of different strata splits. A paper on this package was published in the Journal of Statistical Software <doi:10.18637/jss.v114.i10>.
Author: Jasper Yang [aut, cre],
Pamela Shaw [aut],
Bryan Shepherd [ctb],
Thomas Lumley [ctb],
Gustavo Amorim [rev]
Maintainer: Jasper Yang <jbyang@uw.edu>
Diff between optimall versions 1.2.0 dated 2025-07-16 and 1.3.0 dated 2025-09-08
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NEWS.md | 4 ++++ inst/CITATION |only inst/doc/Multiwave-Estimation.Rmd | 6 +++--- inst/doc/Multiwave-Estimation.html | 12 ++++++------ inst/doc/Multiwave-Object.Rmd | 2 +- inst/doc/Multiwave-Object.html | 4 +++- inst/doc/optimall-vignette.Rmd | 2 +- inst/doc/optimall-vignette.html | 6 ++++-- vignettes/Multiwave-Estimation.Rmd | 6 +++--- vignettes/Multiwave-Object.Rmd | 2 +- vignettes/optimall-vignette.Rmd | 2 +- 13 files changed, 43 insertions(+), 34 deletions(-)
Title: Path-Based Access and Manipulation of Nested Lists
Description: Allows users to list data structures using path-based navigation.
Provides intuitive methods for storing, accessing,
and manipulating nested data through simple path strings.
Key features include strict mode validation, path existence checking, recursive
operations, and automatic parent-level creation. Designed for use cases requiring
organized storage of complex nested data while maintaining simple access patterns.
Particularly useful for configuration management, nested settings, and any
application where data naturally forms a tree-like structure.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between slash versions 0.1.0 dated 2025-04-18 and 0.2.0 dated 2025-09-08
DESCRIPTION | 9 MD5 | 11 NEWS.md |only R/main.R | 100 ++++- README.md | 163 +++++++-- man/slash.Rd | 42 ++ tests/testthat/test-main.R | 804 +++++++++++++++++++++++---------------------- 7 files changed, 678 insertions(+), 451 deletions(-)
Title: Forest Plots for Network Meta-Analysis with Proportion for Paths
and Studies
Description: Provides customized forest plots for network meta-analysis incorporating direct, indirect, and NMA effects. Includes visualizations of evidence contributions through
proportion bars based on the hat matrix and evidence flow decomposition.
Author: Yanqi Zhang [aut, cre]
Maintainer: Yanqi Zhang <zyq1998@iastate.edu>
Diff between NMAforest versions 0.1.0 dated 2025-08-27 and 0.1.1 dated 2025-09-08
DESCRIPTION | 8 - MD5 | 10 - NAMESPACE | 2 R/NMAforest.R | 403 ++++++++++++++++++++++++++++++------------------------- README.md | 6 man/NMAforest.Rd | 21 +- 6 files changed, 251 insertions(+), 199 deletions(-)
Title: Multilevel Functions
Description: Tools used by organizational researchers for the analysis of multilevel data. Includes four broad sets of tools. First, functions for estimating within-group agreement and reliability indices. Second, functions for manipulating multilevel and longitudinal (panel) data. Third, simulations for estimating power and generating multilevel data. Fourth, miscellaneous functions for estimating reliability and performing simple calculations and data transformations.
Author: Paul Bliese [aut, cre],
Gilad Chen [ctb],
Patrick Downes [ctb],
Donald Schepker [ctb],
Jonas Lang [ctb]
Maintainer: Paul Bliese <pdbliese@gmail.com>
Diff between multilevel versions 2.7 dated 2022-03-07 and 2.7.1 dated 2025-09-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/gmeanrel.Rd | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Multivariate Regression Association Measure
Description: Implementations of an estimator for the multivariate regression association measure (MRAM) proposed in Shih and Chen (2025) <in revision> and its associated variable selection algorithm. The MRAM quantifies the predictability of a random vector Y from a random vector X given a random vector Z. It takes the maximum value 1 if and only if Y is almost surely a measurable function of X and Z, and the minimum value of 0 if Y is conditionally independent of X given Z. The MRAM generalizes the Kendall's tau copula correlation ratio proposed in Shih and Emura (2021) <doi:10.1016/j.jmva.2020.104708> by employing the spatial sign function. The estimator is based on the nearest neighbor method, and the associated variable selection algorithm is adapted from the feature ordering by conditional independence (FOCI) algorithm of Azadkia and Chatterjee (2021) <doi:10.1214/21-AOS2073>. For further details, see the paper Shih and Chen (2025) <in revision>.
Author: Jia-Han Shih [aut, cre],
Yi-Hau Chen [aut]
Maintainer: Jia-Han Shih <jhshih@math.nsysu.edu.tw>
Diff between MRAM versions 0.1.2 dated 2025-06-06 and 0.2.1 dated 2025-09-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/mram.R | 54 ++++++++++++++++++++++++++++++++++++++++-------------- R/vs_mram.R | 40 +++++++++++++++++++++++++++++++++++----- man/mram.Rd | 52 ++++++++++++++++++++++++++++++++++++++-------------- man/vs_mram.Rd | 40 +++++++++++++++++++++++++++++++++++----- 6 files changed, 157 insertions(+), 47 deletions(-)
Title: Locally Stationary Two-Dimensional Wavelet Process Estimation
Scheme
Description: Estimates two-dimensional local wavelet spectra.
Author: Idris Eckley [aut, cre],
Guy Nason [aut],
Sarah Taylor [ctb],
Matthew Nunes [ctb]
Maintainer: Idris Eckley <i.eckley@lancaster.ac.uk>
Diff between LS2W versions 1.3.6 dated 2022-11-01 and 1.3.7 dated 2025-09-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/CITATION | 32 ++++++++++++++------------------ man/AvBasis.wst2D.Rd | 8 ++++---- man/imwr.imwd.rd | 12 ++++++------ 5 files changed, 32 insertions(+), 36 deletions(-)
Title: Sean 'Lahman' Baseball Database
Description: Provides the tables from the 'Sean Lahman Baseball Database' as
a set of R data.frames. It uses the data on pitching, hitting and fielding
performance and other tables from 1871 through 2024, as recorded in the 2025
version of the database. Documentation examples show how many baseball
questions can be investigated.
Author: Michael Friendly [aut],
Chris Dalzell [cre, aut],
Martin Monkman [aut],
Dennis Murphy [aut],
Vanessa Foot [ctb],
Justeena Zaki-Azat [ctb],
Daniel J Eck [ctb],
Sean Lahman [cph]
Maintainer: Chris Dalzell <cdalzell@gmail.com>
Diff between Lahman versions 12.0-0 dated 2024-09-26 and 13.0-0 dated 2025-09-08
Lahman-12.0-0/Lahman/man/figures/Lahman_hex.png |only Lahman-13.0-0/Lahman/DESCRIPTION | 17 +- Lahman-13.0-0/Lahman/MD5 | 152 +++++++++--------- Lahman-13.0-0/Lahman/NEWS.md | 3 Lahman-13.0-0/Lahman/build/vignette.rds |binary Lahman-13.0-0/Lahman/data/AllstarFull.RData |binary Lahman-13.0-0/Lahman/data/Appearances.RData |binary Lahman-13.0-0/Lahman/data/AwardsManagers.RData |binary Lahman-13.0-0/Lahman/data/AwardsPlayers.RData |binary Lahman-13.0-0/Lahman/data/AwardsShareManagers.RData |binary Lahman-13.0-0/Lahman/data/AwardsSharePlayers.RData |binary Lahman-13.0-0/Lahman/data/Batting.RData |binary Lahman-13.0-0/Lahman/data/BattingPost.RData |binary Lahman-13.0-0/Lahman/data/CollegePlaying.RData |binary Lahman-13.0-0/Lahman/data/Fielding.RData |binary Lahman-13.0-0/Lahman/data/FieldingOF.RData |binary Lahman-13.0-0/Lahman/data/FieldingOFsplit.RData |binary Lahman-13.0-0/Lahman/data/FieldingPost.RData |binary Lahman-13.0-0/Lahman/data/HallOfFame.RData |binary Lahman-13.0-0/Lahman/data/HomeGames.RData |binary Lahman-13.0-0/Lahman/data/LahmanData.RData |binary Lahman-13.0-0/Lahman/data/Managers.RData |binary Lahman-13.0-0/Lahman/data/ManagersHalf.RData |binary Lahman-13.0-0/Lahman/data/Parks.RData |binary Lahman-13.0-0/Lahman/data/People.RData |binary Lahman-13.0-0/Lahman/data/Pitching.RData |binary Lahman-13.0-0/Lahman/data/PitchingPost.RData |binary Lahman-13.0-0/Lahman/data/Salaries.RData |binary Lahman-13.0-0/Lahman/data/Schools.RData |binary Lahman-13.0-0/Lahman/data/SeriesPost.RData |binary Lahman-13.0-0/Lahman/data/Teams.RData |binary Lahman-13.0-0/Lahman/data/TeamsFranchises.RData |binary Lahman-13.0-0/Lahman/data/TeamsHalf.RData |binary Lahman-13.0-0/Lahman/data/battingLabels.RData |binary Lahman-13.0-0/Lahman/data/fieldingLabels.RData |binary Lahman-13.0-0/Lahman/data/pitchingLabels.RData |binary Lahman-13.0-0/Lahman/inst/doc/FHM-primer.R |only Lahman-13.0-0/Lahman/inst/doc/FHM-primer.Rmd |only Lahman-13.0-0/Lahman/inst/doc/FHM-primer.html |only Lahman-13.0-0/Lahman/inst/doc/hits-by-type.Rmd | 2 Lahman-13.0-0/Lahman/inst/doc/hits-by-type.html | 10 - Lahman-13.0-0/Lahman/inst/doc/payroll.R | 6 Lahman-13.0-0/Lahman/inst/doc/payroll.html | 86 +++++----- Lahman-13.0-0/Lahman/inst/doc/run-scoring-trends.html | 10 - Lahman-13.0-0/Lahman/inst/doc/strikeoutsandhr.html | 38 ++-- Lahman-13.0-0/Lahman/inst/doc/vignette-intro.Rmd | 8 Lahman-13.0-0/Lahman/inst/doc/vignette-intro.html | 19 +- Lahman-13.0-0/Lahman/inst/scripts/readLahman.R | 15 - Lahman-13.0-0/Lahman/man/AllstarFull.Rd | 4 Lahman-13.0-0/Lahman/man/Appearances.Rd | 4 Lahman-13.0-0/Lahman/man/AwardsManagers.Rd | 4 Lahman-13.0-0/Lahman/man/AwardsPlayers.Rd | 4 Lahman-13.0-0/Lahman/man/AwardsShareManagers.Rd | 4 Lahman-13.0-0/Lahman/man/AwardsSharePlayers.Rd | 4 Lahman-13.0-0/Lahman/man/Batting.Rd | 4 Lahman-13.0-0/Lahman/man/BattingPost.Rd | 4 Lahman-13.0-0/Lahman/man/CollegePlaying.Rd | 2 Lahman-13.0-0/Lahman/man/Fielding.Rd | 4 Lahman-13.0-0/Lahman/man/FieldingOF.Rd | 4 Lahman-13.0-0/Lahman/man/FieldingOFsplit.Rd | 4 Lahman-13.0-0/Lahman/man/FieldingPost.Rd | 4 Lahman-13.0-0/Lahman/man/HallOfFame.Rd | 4 Lahman-13.0-0/Lahman/man/HomeGames.Rd | 4 Lahman-13.0-0/Lahman/man/Lahman-package.Rd | 8 Lahman-13.0-0/Lahman/man/Managers.Rd | 4 Lahman-13.0-0/Lahman/man/ManagersHalf.Rd | 2 Lahman-13.0-0/Lahman/man/Parks.Rd | 4 Lahman-13.0-0/Lahman/man/People.Rd | 4 Lahman-13.0-0/Lahman/man/Pitching.Rd | 4 Lahman-13.0-0/Lahman/man/PitchingPost.Rd | 4 Lahman-13.0-0/Lahman/man/Salaries.Rd | 2 Lahman-13.0-0/Lahman/man/Schools.Rd | 4 Lahman-13.0-0/Lahman/man/SeriesPost.Rd | 4 Lahman-13.0-0/Lahman/man/Teams.Rd | 4 Lahman-13.0-0/Lahman/man/TeamsFranchises.Rd | 2 Lahman-13.0-0/Lahman/man/TeamsHalf.Rd | 2 Lahman-13.0-0/Lahman/man/figures/logo.png |only Lahman-13.0-0/Lahman/vignettes/FHM-primer.Rmd |only Lahman-13.0-0/Lahman/vignettes/hits-by-type.Rmd | 2 Lahman-13.0-0/Lahman/vignettes/vignette-intro.Rmd | 8 80 files changed, 255 insertions(+), 227 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.33 dated 2025-03-21 and 4.34 dated 2025-09-08
DESCRIPTION | 8 +-- MD5 | 42 ++++++++-------- NEWS.md | 50 +++++++++++++++++++- R/distMat.R |only R/distPres.R | 47 +----------------- R/fuzzyRangeChange.R | 10 ++-- R/getRegion.R | 120 +++++++++++++++++++++++++++++------------------- R/gridRecords.R | 46 ++++++++++++------ R/multConvert.R | 16 +++--- R/multTSA.R | 36 ++++++++++---- R/timer.R | 20 +++++--- data/rotif.env.rda |binary data/rotifers.rda |binary man/distMat.Rd |only man/distPres.Rd | 10 ++-- man/fuzzyRangeChange.Rd | 8 +-- man/fuzzySim-package.Rd | 4 - man/getRegion.Rd | 22 +++++--- man/gridRecords.Rd | 45 +++++++++++++++--- man/integerCols.Rd | 4 - man/multConvert.Rd | 36 ++++++++++---- man/multTSA.Rd | 19 ++++--- man/multicol.Rd | 12 ++-- 23 files changed, 342 insertions(+), 213 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://github.com/lrberge/fixest/blob/master/_DOCS/FENmlm_paper.pdf>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Grant McDermott [ctb] ,
Russell Lenth [ctb],
Kyle Butts [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.12.1 dated 2024-06-13 and 0.13.2 dated 2025-09-08
fixest-0.12.1/fixest/src/quf.cpp |only fixest-0.13.2/fixest/DESCRIPTION | 23 fixest-0.13.2/fixest/MD5 | 209 - fixest-0.13.2/fixest/NAMESPACE | 11 fixest-0.13.2/fixest/NEWS.md | 248 ++ fixest-0.13.2/fixest/R/RcppExports.R | 24 fixest-0.13.2/fixest/R/VCOV.R | 824 ++++--- fixest-0.13.2/fixest/R/alias_etable.R | 16 fixest-0.13.2/fixest/R/coefplot.R | 678 +++-- fixest-0.13.2/fixest/R/collinearity.R |only fixest-0.13.2/fixest/R/data_documentation.R |only fixest-0.13.2/fixest/R/data_tools.R | 350 +-- fixest-0.13.2/fixest/R/debug.R |only fixest-0.13.2/fixest/R/did.R | 148 - fixest-0.13.2/fixest/R/estimation.R | 416 ++- fixest-0.13.2/fixest/R/etable.R | 735 +++--- fixest-0.13.2/fixest/R/femlm.R | 4 fixest-0.13.2/fixest/R/fitstats.R | 63 fixest-0.13.2/fixest/R/fixest_env.R | 634 +++-- fixest-0.13.2/fixest/R/fixest_multi.R | 62 fixest-0.13.2/fixest/R/graph_xaxis.R | 40 fixest-0.13.2/fixest/R/iplot.R | 4 fixest-0.13.2/fixest/R/methods.R | 868 +++++-- fixest-0.13.2/fixest/R/miscfuns.R | 1234 ++++------ fixest-0.13.2/fixest/R/onLoad.R | 65 fixest-0.13.2/fixest/R/panel.R | 43 fixest-0.13.2/fixest/R/r-language.R |only fixest-0.13.2/fixest/R/sparse_model_matrix.R |only fixest-0.13.2/fixest/R/startup.R | 125 - fixest-0.13.2/fixest/R/test_fun.R | 293 +- fixest-0.13.2/fixest/README.md | 2 fixest-0.13.2/fixest/build/vignette.rds |binary fixest-0.13.2/fixest/data/base_pub.RData |only fixest-0.13.2/fixest/data/datalist | 2 fixest-0.13.2/fixest/data/fulton.RData |only fixest-0.13.2/fixest/inst/doc/collinearity.R |only fixest-0.13.2/fixest/inst/doc/collinearity.Rmd |only fixest-0.13.2/fixest/inst/doc/collinearity.html |only fixest-0.13.2/fixest/inst/doc/exporting_tables.R | 64 fixest-0.13.2/fixest/inst/doc/exporting_tables.Rmd | 2 fixest-0.13.2/fixest/inst/doc/exporting_tables.html | 273 -- fixest-0.13.2/fixest/inst/doc/fixest_walkthrough.R | 193 - fixest-0.13.2/fixest/inst/doc/fixest_walkthrough.Rmd | 46 fixest-0.13.2/fixest/inst/doc/fixest_walkthrough.html | 1860 +++++++--------- fixest-0.13.2/fixest/inst/doc/multiple_estimations.R | 14 fixest-0.13.2/fixest/inst/doc/multiple_estimations.Rmd | 2 fixest-0.13.2/fixest/inst/doc/multiple_estimations.html | 54 fixest-0.13.2/fixest/inst/doc/standard_errors.R | 278 +- fixest-0.13.2/fixest/inst/doc/standard_errors.Rmd | 58 fixest-0.13.2/fixest/inst/doc/standard_errors.html | 363 +-- fixest-0.13.2/fixest/man/base_did.Rd | 4 fixest-0.13.2/fixest/man/base_pub.Rd |only fixest-0.13.2/fixest/man/base_stagg.Rd | 4 fixest-0.13.2/fixest/man/coefplot.Rd | 220 + fixest-0.13.2/fixest/man/coeftable.fixest.Rd | 22 fixest-0.13.2/fixest/man/coeftable.fixest_multi.Rd | 15 fixest-0.13.2/fixest/man/confint.fixest.Rd | 4 fixest-0.13.2/fixest/man/confint.fixest_multi.Rd | 4 fixest-0.13.2/fixest/man/degrees_freedom.Rd | 4 fixest-0.13.2/fixest/man/demean.Rd | 11 fixest-0.13.2/fixest/man/etable.Rd | 295 +- fixest-0.13.2/fixest/man/feNmlm.Rd | 123 - fixest-0.13.2/fixest/man/feglm.Rd | 151 - fixest-0.13.2/fixest/man/femlm.Rd | 142 - fixest-0.13.2/fixest/man/feols.Rd | 166 - fixest-0.13.2/fixest/man/fitstat.Rd | 34 fixest-0.13.2/fixest/man/fitstat_register.Rd | 2 fixest-0.13.2/fixest/man/fixest-package.Rd | 1 fixest-0.13.2/fixest/man/formula.fixest.Rd | 89 fixest-0.13.2/fixest/man/fulton.Rd |only fixest-0.13.2/fixest/man/hatvalues.fixest.Rd | 25 fixest-0.13.2/fixest/man/lag.formula.Rd | 4 fixest-0.13.2/fixest/man/model.matrix.fixest.Rd | 52 fixest-0.13.2/fixest/man/obs.Rd | 8 fixest-0.13.2/fixest/man/panel.Rd | 2 fixest-0.13.2/fixest/man/predict.fixest.Rd | 4 fixest-0.13.2/fixest/man/print.fixest.Rd | 1 fixest-0.13.2/fixest/man/print.fixest_multi.Rd | 13 fixest-0.13.2/fixest/man/setFixest_coefplot.Rd | 7 fixest-0.13.2/fixest/man/setFixest_estimation.Rd | 52 fixest-0.13.2/fixest/man/setFixest_fml.Rd | 10 fixest-0.13.2/fixest/man/setFixest_vcov.Rd | 26 fixest-0.13.2/fixest/man/sparse_model_matrix.Rd |only fixest-0.13.2/fixest/man/ssc.Rd | 82 fixest-0.13.2/fixest/man/summary.fixest.Rd | 24 fixest-0.13.2/fixest/man/summary.fixest_multi.Rd | 17 fixest-0.13.2/fixest/man/to_integer.Rd | 39 fixest-0.13.2/fixest/man/trade.Rd | 14 fixest-0.13.2/fixest/man/update.fixest.Rd | 57 fixest-0.13.2/fixest/man/vcov.fixest.Rd | 17 fixest-0.13.2/fixest/man/vcov_cluster.Rd | 7 fixest-0.13.2/fixest/man/vcov_conley.Rd | 21 fixest-0.13.2/fixest/man/vcov_hac.Rd | 7 fixest-0.13.2/fixest/man/vcov_hetero.Rd |only fixest-0.13.2/fixest/man/xpd.Rd | 118 - fixest-0.13.2/fixest/src/RcppExports.cpp | 89 fixest-0.13.2/fixest/src/collineairy.cpp |only fixest-0.13.2/fixest/src/convergence.cpp | 48 fixest-0.13.2/fixest/src/demeaning.cpp | 332 -- fixest-0.13.2/fixest/src/dsb.cpp | 5 fixest-0.13.2/fixest/src/fixest_main.cpp |only fixest-0.13.2/fixest/src/fixest_main.h |only fixest-0.13.2/fixest/src/index_fixed_effects.cpp |only fixest-0.13.2/fixest/src/lm_related.cpp | 215 - fixest-0.13.2/fixest/src/misc_funs.cpp | 88 fixest-0.13.2/fixest/src/parallel_funs.cpp | 68 fixest-0.13.2/fixest/src/string_funs.cpp | 5 fixest-0.13.2/fixest/src/to_index.cpp |only fixest-0.13.2/fixest/src/to_index.h |only fixest-0.13.2/fixest/src/util.h |only fixest-0.13.2/fixest/src/vcov_related.cpp | 13 fixest-0.13.2/fixest/tests/fixest_tests.R | 861 ++++++- fixest-0.13.2/fixest/vignettes/collinearity.Rmd |only fixest-0.13.2/fixest/vignettes/exporting_tables.Rmd | 2 fixest-0.13.2/fixest/vignettes/fixest_walkthrough.Rmd | 46 fixest-0.13.2/fixest/vignettes/multiple_estimations.Rmd | 2 fixest-0.13.2/fixest/vignettes/standard_errors.Rmd | 58 117 files changed, 8191 insertions(+), 5867 deletions(-)
Title: Extra Recipes for Encoding Predictors
Description: Predictors can be converted to one or more numeric
representations using a variety of methods. Effect encodings using
simple generalized linear models <doi:10.48550/arXiv.1611.09477> or
nonlinear models <doi:10.48550/arXiv.1604.06737> can be used. There
are also functions for dimension reduction and other approaches.
Author: Emil Hvitfeldt [aut, cre] ,
Max Kuhn [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between embed versions 1.1.5 dated 2025-01-22 and 1.2.0 dated 2025-09-08
DESCRIPTION | 31 +-- LICENSE | 2 MD5 | 149 +++++++------- NAMESPACE | 12 - NEWS.md | 9 R/aaa.R | 42 +++- R/collapse_cart.R | 77 ++++--- R/collapse_stringdist.R | 74 ++++--- R/discretize_cart.R | 73 ++++--- R/discretize_xgb.R | 116 +++++++---- R/embed-package.R | 1 R/embed.R | 235 +++++++++++++---------- R/feature_hash.R | 275 +-------------------------- R/lencode.R |only R/lencode_bayes.R | 64 ++++-- R/lencode_glm.R | 50 ++-- R/lencode_mixed.R | 57 +++-- R/pca_sparse.R | 77 ++++--- R/pca_sparse_bayes.R | 80 ++++--- R/pca_truncated.R | 70 ++++-- R/umap.R | 113 ++++++----- R/woe.R | 161 ++++++++------- build |only man/add_woe.Rd | 2 man/dictionary.Rd | 2 man/embed-package.Rd | 4 man/required_pkgs.embed.Rd | 6 man/rmd/num_comp.Rmd | 5 man/rmd/tunable-args.Rmd | 18 + man/step_collapse_cart.Rd | 4 man/step_collapse_stringdist.Rd | 31 +-- man/step_discretize_cart.Rd | 2 man/step_discretize_xgb.Rd | 4 man/step_embed.Rd | 32 +-- man/step_feature_hash.Rd | 112 ---------- man/step_lencode.Rd |only man/step_lencode_bayes.Rd | 2 man/step_lencode_glm.Rd | 2 man/step_lencode_mixed.Rd | 2 man/step_pca_sparse.Rd | 24 +- man/step_pca_sparse_bayes.Rd | 24 +- man/step_pca_truncated.Rd | 41 +--- man/step_umap.Rd | 37 +-- man/step_woe.Rd | 18 - tests/testthat/_snaps/collapse_cart.md | 6 tests/testthat/_snaps/collapse_stringdist.md | 4 tests/testthat/_snaps/discretize_cart.md | 34 +-- tests/testthat/_snaps/discretize_xgb.md | 36 +-- tests/testthat/_snaps/embed.md | 7 tests/testthat/_snaps/extension_check.md | 2 tests/testthat/_snaps/feature_hash.md | 118 ----------- tests/testthat/_snaps/lencode.md |only tests/testthat/_snaps/lencode_bayes.md | 53 ++--- tests/testthat/_snaps/lencode_glm.md | 18 - tests/testthat/_snaps/lencode_mixed.md | 8 tests/testthat/_snaps/pca_sparse.md | 8 tests/testthat/_snaps/pca_sparse_bayes.md | 16 - tests/testthat/_snaps/pca_truncated.md | 4 tests/testthat/_snaps/umap.md | 26 -- tests/testthat/_snaps/woe.md | 18 - tests/testthat/helper-make_binned_data.R | 6 tests/testthat/test-collapse_cart.R | 82 ++++---- tests/testthat/test-collapse_stringdist.R | 122 ++++++----- tests/testthat/test-discretize_cart.R | 80 +++---- tests/testthat/test-discretize_xgb.R | 235 ++++++++++++----------- tests/testthat/test-embed.R | 272 ++++++++++++++------------ tests/testthat/test-extension_check.R | 1 tests/testthat/test-feature_hash.R | 264 ------------------------- tests/testthat/test-lencode.R |only tests/testthat/test-lencode_bayes.R | 127 ++++++------ tests/testthat/test-lencode_glm.R | 69 +++--- tests/testthat/test-lencode_mixed.R | 86 ++++---- tests/testthat/test-pca_sparse.R | 152 ++++++++------ tests/testthat/test-pca_sparse_bayes.R | 164 ++++++++-------- tests/testthat/test-pca_truncated.R | 142 +++++++------ tests/testthat/test-s3-methods.R | 10 tests/testthat/test-umap.R | 213 ++++++++++++-------- tests/testthat/test-woe.R | 225 +++++++++++++--------- 78 files changed, 2269 insertions(+), 2479 deletions(-)
Title: Linear Discriminant Function and Canonical Correlation Analysis
Description: Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Manly & Alberto (2017, ISBN:9781498728966),
Rencher (2002, ISBN:0-471-41889-7), and
Tabachnik & Fidell (2019, ISBN:9780134790541).
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between DFA.CANCOR versions 0.3.8 dated 2025-05-29 and 0.3.9 dated 2025-09-08
DESCRIPTION | 8 +- MD5 | 16 ++--- NAMESPACE | 2 R/DESCRIPTIVES.R |only R/DFA.R | 73 ++++++++++++----------- R/GROUP.DIFFS.R | 18 ++++- R/GROUP.PROFILES.R | 153 ++++++++++++++++++++++++++++---------------------- R/utilities_boc.R | 4 - man/DESCRIPTIVES.Rd |only man/GROUP.PROFILES.Rd | 20 ++++++ 10 files changed, 174 insertions(+), 120 deletions(-)
Title: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or
Bitmap Arrays
Description: Renders vector-based svg images into high-quality custom-size
bitmap arrays using 'librsvg2'. The resulting bitmap can be written to
e.g. png, jpeg or webp format. In addition, the package can convert
images directly to various formats such as pdf or postscript.
Author: Jeroen Ooms [aut, cre] ,
Salim Brueggemann [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between rsvg versions 2.6.2 dated 2025-03-23 and 2.7.0 dated 2025-09-08
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS | 3 +++ build/vignette.rds |binary src/Makevars.win | 10 +++++----- src/dummy.cc |only tools/winlibs.R | 6 +++--- 7 files changed, 23 insertions(+), 19 deletions(-)
Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via the fast-and-robust bootstrap test ROBMED (Alfons, Ates & Groenen, 2022a; <doi:10.1177/1094428121999096>), as well as various other methods. Details on the implementation and code examples can be found in Alfons, Ates, and Groenen (2022b) <doi:10.18637/jss.v103.i13>. Further discussion on robust mediation analysis can be found in Alfons & Schley (2025) <doi:10.31234/osf.io/2hqdy>.
Author: Andreas Alfons [aut, cre] ,
Nufer Y. Ates [dtc]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robmed versions 1.2.1 dated 2025-02-08 and 1.2.2 dated 2025-09-08
DESCRIPTION | 21 +++++++++-------- MD5 | 50 +++++++++++++++++++++--------------------- NEWS | 7 +++++ R/BSG2014.R | 16 ++++++++----- R/fit_mediation.R | 4 +++ R/robmed-package.R | 8 +++++- R/setup_weight_plot.R | 4 +++ R/summary.R | 4 +++ R/test_mediation.R | 4 +++ R/weight_plot.R | 4 +++ build/partial.rdb |binary build/vignette.rds |binary data/BSG2014.RData |binary inst/CITATION | 8 +++--- inst/doc/robmed-intro.R | 16 ++++++------- inst/doc/robmed-intro.Rnw | 12 +++++----- inst/doc/robmed-intro.pdf |binary man/BSG2014.Rd | 16 ++++++++----- man/fit_mediation.Rd | 4 +++ man/robmed-package.Rd | 8 +++++- man/setup_weight_plot.Rd | 4 +++ man/summary.test_mediation.Rd | 4 +++ man/test_mediation.Rd | 4 +++ man/weight_plot.Rd | 4 +++ vignettes/robmed-intro.Rnw | 12 +++++----- vignettes/robmed.bib | 2 - 26 files changed, 140 insertions(+), 76 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images and bounding boxes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
[...truncated...]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.11.3 dated 2025-08-28 and 2.11.4 dated 2025-09-08
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------ NEWS | 2 + NEWS.md | 2 + R/AAAmapviewClasses.R | 1 inst/tinytest/test-mapview.R | 40 ----------------------------------- inst/tinytest/test-mapviewControls.R | 6 ----- man/viewExtent.Rd | 16 ++++++-------- 8 files changed, 23 insertions(+), 64 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file forma [...truncated...]
Author: Tim Schaefer [aut, cre]
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.18 dated 2024-02-02 and 1.0.0 dated 2025-09-08
DESCRIPTION | 14 MD5 | 604 ++--- NAMESPACE | 352 +-- R/brainvoyager.R | 880 ++++---- R/cifti.R | 226 +- R/gifti_writer.R | 540 ++--- R/gifti_xml_tools.R | 452 ++-- R/mghheader.R | 1456 +++++++------- R/nifti_common.R | 384 +-- R/nifti_to_mgh.R | 794 +++---- R/optdata.R | 350 +-- R/read_dti_tck.R | 434 ++-- R/read_dti_trk.R | 246 +- R/read_fs_curv.R | 5 R/read_fs_label.R | 400 +-- R/read_fs_mgh.R | 906 ++++---- R/read_fs_patch.R | 332 +-- R/read_fs_surface.R | 2 R/read_fs_volume.R | 98 R/read_fs_weight.R | 138 - R/read_nifti1.R | 438 ++-- R/read_nifti2.R | 314 +-- R/read_nisurface.R | 326 +-- R/rotate3d.R | 404 +-- R/surface_dist.R | 210 +- R/write_fs_curv.R | 4 R/write_fs_mgh.R | 30 R/write_fs_patch.R | 210 +- R/write_fs_surface.R | 9 R/write_fs_weight.R | 186 - R/write_nifti1.R | 488 ++-- R/write_nifti2.R | 448 ++-- build/vignette.rds |binary inst/doc/freesurferformats.R | 32 inst/doc/freesurferformats.Rmd | 624 +++--- inst/doc/freesurferformats.html | 6 inst/doc/freesurferformats_header.R | 36 inst/doc/freesurferformats_header.Rmd | 190 - inst/doc/freesurferformats_header.html | 2 inst/doc/freesurferformats_write.R | 98 inst/doc/freesurferformats_write.Rmd | 314 +-- inst/doc/freesurferformats_write.html | 2 inst/extdata/colorlut.txt | 20 inst/extdata/cube.geo | 36 inst/extdata/cube.gii | 34 inst/extdata/cube.off | 44 inst/extdata/cube.ply | 58 inst/extdata/cube.stl | 172 - inst/extdata/cube.tri | 44 inst/extdata/cube.vtk | 52 inst/extdata/cube.wobj | 40 inst/extdata/cube_quads.byu | 16 inst/extdata/lh.entorhinal_exvivo.label | 2174 ++++++++++----------- inst/extdata/lh.testsurface.asc | 20 inst/extdata/lh.tinysurface.asc | 20 inst/extdata/lh.tinysurface.gii | 126 - inst/extdata/register.dat | 18 inst/extdata/talairach.lta | 60 inst/extdata/talairach.xfm | 16 inst/extdata/tiny_label.gii | 34 inst/extdata/tiny_morph.gii | 26 man/adjust.face.indices.to.Rd | 46 man/annot.max.region.idx.Rd | 40 man/annot.unique.Rd | 82 man/assert.surface.Rd | 40 man/bvsmp.Rd | 46 man/cdata.Rd | 40 man/check.dtype.for.data.Rd | 37 man/check_data_and_settings_consistency.Rd | 60 man/closest.vert.to.point.Rd | 50 man/colortable.from.annot.Rd | 82 man/coord.to.key.Rd | 40 man/delete_all_opt_data.Rd | 28 man/doapply.transform.mtx.Rd | 54 man/download_opt_data.Rd | 28 man/euclidian.dist.Rd | 40 man/faces.quad.to.tris.Rd | 86 man/faces.tris.to.quad.Rd | 40 man/fileopen.gz.or.not.Rd | 30 man/filepath.ends.with.Rd | 40 man/fixed.vec.format.int.Rd | 58 man/flip2D.Rd | 38 man/flip3D.Rd | 52 man/fread3.Rd | 36 man/fs.get.morph.file.ext.for.format.Rd | 80 man/fs.get.morph.file.format.from.filename.Rd | 80 man/fs.patch.Rd | 74 man/fs.surface.to.tmesh3d.Rd | 34 man/fwrite3.Rd | 34 man/get.dti.trk.endianness.Rd | 42 man/get.slice.orientation.Rd | 36 man/get_opt_data_filepath.Rd | 38 man/gifti_writer.Rd | 54 man/gifti_xml.Rd | 116 - man/gifti_xml_add_global_metadata.Rd | 64 man/gifti_xml_write.Rd | 70 man/giftixml_add_labeltable_from_annot.Rd | 38 man/giftixml_add_labeltable_posneg.Rd | 36 man/guess.filename.is.gzipped.Rd | 40 man/int.to.col.brainvoyager.Rd | 36 man/is.bvsmp.Rd | 34 man/is.fs.annot.Rd | 34 man/is.fs.label.Rd | 34 man/is.fs.surface.Rd | 34 man/is.fs.volume.Rd | 34 man/is.mghheader.Rd | 34 man/linesplit.fixed.Rd | 52 man/list_opt_data.Rd | 28 man/mgh.is.conformed.Rd | 40 man/mghheader.Rd | 40 man/mghheader.centervoxelRAS.from.firstvoxelRAS.Rd | 38 man/mghheader.crs.orientation.Rd | 34 man/mghheader.is.conformed.Rd | 34 man/mghheader.is.ras.valid.Rd | 82 man/mghheader.primary.slice.direction.Rd | 34 man/mghheader.ras2vox.Rd | 86 man/mghheader.ras2vox.tkreg.Rd | 86 man/mghheader.scanner2tkreg.Rd | 82 man/mghheader.tkreg2scanner.Rd | 82 man/mghheader.update.from.vox2ras.Rd | 38 man/mghheader.vox2ras.Rd | 86 man/mghheader.vox2ras.tkreg.Rd | 86 man/mghheader.vox2vox.Rd | 38 man/mni152reg.Rd | 40 man/mri_dtype_numbytes.Rd | 36 man/ni1header.for.data.Rd | 38 man/ni1header.template.Rd | 40 man/ni2header.for.data.Rd | 34 man/ni2header.template.Rd | 40 man/nifti.datadim.from.dimfield.Rd | 52 man/nifti.datadim.to.dimfield.Rd | 52 man/nifti.dtype.info.Rd | 40 man/nifti.field.check.length.Rd | 44 man/nifti.field.check.nchar.max.Rd | 44 man/nifti.file.uses.fshack.Rd | 40 man/nifti.file.version.Rd | 34 man/nifti.header.check.Rd | 38 man/nifti.space.info.Rd | 36 man/nifti.time.info.Rd | 36 man/nifti.transform.type.name.Rd | 36 man/parse.stl.ascii.face.Rd | 36 man/parse.transform.matrix.lines.Rd | 40 man/ply.header.lines.Rd | 24 man/polygon.soup.to.indexed.mesh.Rd | 40 man/print.fs.annot.Rd | 32 man/print.fs.label.Rd | 32 man/print.fs.patch.Rd | 32 man/print.fs.surface.Rd | 32 man/print.fs.volume.Rd | 32 man/ras.to.surfaceras.Rd | 48 man/ras.to.talairachras.Rd | 48 man/read.dti.tck.Rd | 48 man/read.dti.trk.Rd | 50 man/read.dti.tsf.Rd | 60 man/read.element.counts.ply.header.Rd | 30 man/read.fixed.char.binary.Rd | 50 man/read.fs.annot.Rd | 2 man/read.fs.colortable.Rd | 78 man/read.fs.curv.Rd | 106 - man/read.fs.gca.Rd | 54 man/read.fs.label.Rd | 66 man/read.fs.label.gii.Rd | 74 man/read.fs.label.native.Rd | 88 man/read.fs.mgh.Rd | 138 - man/read.fs.morph.Rd | 114 - man/read.fs.morph.asc.Rd | 40 man/read.fs.morph.bvsmp.Rd | 38 man/read.fs.morph.cifti.Rd | 104 - man/read.fs.morph.gii.Rd | 102 man/read.fs.morph.ni1.Rd | 40 man/read.fs.morph.ni2.Rd | 34 man/read.fs.morph.nii.Rd | 34 man/read.fs.morph.txt.Rd | 34 man/read.fs.patch.Rd | 52 man/read.fs.patch.asc.Rd | 48 man/read.fs.surface.Rd | 100 man/read.fs.surface.asc.Rd | 94 man/read.fs.surface.bvsrf.Rd | 86 man/read.fs.surface.byu.Rd | 44 man/read.fs.surface.geo.Rd | 86 man/read.fs.surface.gii.Rd | 92 man/read.fs.surface.ico.Rd | 86 man/read.fs.surface.mz3.Rd | 40 man/read.fs.surface.obj.Rd | 86 man/read.fs.surface.off.Rd | 80 man/read.fs.surface.ply.Rd | 86 man/read.fs.surface.stl.Rd | 48 man/read.fs.surface.stl.ascii.Rd | 52 man/read.fs.surface.stl.bin.Rd | 50 man/read.fs.surface.vtk.Rd | 86 man/read.fs.transform.Rd | 92 man/read.fs.transform.dat.Rd | 82 man/read.fs.transform.lta.Rd | 86 man/read.fs.transform.xfm.Rd | 88 man/read.fs.volume.Rd | 140 - man/read.fs.volume.nii.Rd | 112 - man/read.fs.weight.Rd | 84 man/read.fs.weight.asc.Rd | 36 man/read.mesh.brainvoyager.Rd | 86 man/read.nifti1.data.Rd | 48 man/read.nifti1.header.Rd | 40 man/read.nifti1.header.internal.Rd | 40 man/read.nifti2.data.Rd | 42 man/read.nifti2.header.Rd | 34 man/read.nifti2.header.internal.Rd | 46 man/read.smp.brainvoyager.Rd | 70 man/read.smp.brainvoyager.v1or2.Rd | 42 man/read.smp.brainvoyager.v3.Rd | 42 man/read.smp.brainvoyager.v4or5.Rd | 42 man/read_nisurface.Rd | 108 - man/read_nisurfacefile.Rd | 102 man/read_nisurfacefile.fsascii.Rd | 38 man/read_nisurfacefile.fsnative.Rd | 38 man/read_nisurfacefile.gifti.Rd | 38 man/readable.files.Rd | 56 man/readcolortable.Rd | 40 man/readcolortable_oldformat.Rd | 40 man/rotate2D.Rd | 38 man/rotate3D.Rd | 52 man/rotate90.Rd | 38 man/scann.Rd | 44 man/sm0to1.Rd | 70 man/sm1to0.Rd | 70 man/stl.format.file.is.ascii.Rd | 30 man/surfaceras.to.ras.Rd | 62 man/surfaceras.to.talairach.Rd | 56 man/talairachras.to.ras.Rd | 50 man/translate.mri.dtype.Rd | 36 man/vertex.euclid.dist.Rd | 54 man/vertexdists.to.point.Rd | 50 man/write.fs.colortable.Rd | 66 man/write.fs.curv.Rd | 80 man/write.fs.label.Rd | 4 man/write.fs.label.gii.Rd | 112 - man/write.fs.mgh.Rd | 102 man/write.fs.morph.Rd | 92 man/write.fs.morph.asc.Rd | 82 man/write.fs.morph.gii.Rd | 96 man/write.fs.morph.ni1.Rd | 96 man/write.fs.morph.ni2.Rd | 106 - man/write.fs.morph.smp.Rd | 88 man/write.fs.morph.txt.Rd | 78 man/write.fs.patch.Rd | 52 man/write.fs.surface.Rd | 10 man/write.fs.surface.asc.Rd | 8 man/write.fs.surface.bvsrf.Rd | 62 man/write.fs.surface.byu.Rd | 8 man/write.fs.surface.gii.Rd | 8 man/write.fs.surface.mz3.Rd | 8 man/write.fs.surface.obj.Rd | 6 man/write.fs.surface.off.Rd | 4 man/write.fs.surface.off.ply2.Rd | 4 man/write.fs.surface.ply.Rd | 6 man/write.fs.surface.ply2.Rd | 6 man/write.fs.surface.vtk.Rd | 8 man/write.fs.weight.Rd | 86 man/write.fs.weight.asc.Rd | 82 man/write.nifti1.Rd | 50 man/write.nifti2.Rd | 46 man/write.smp.brainvoyager.Rd | 42 man/write.smp.brainvoyager.v2.Rd | 44 man/write.smp.brainvoyager.v3or4or5.Rd | 44 man/xml_node_gifti_MD.Rd | 50 man/xml_node_gifti_coordtransform.Rd | 56 man/xml_node_gifti_label.Rd | 44 man/xml_node_gifti_label_table.Rd | 30 man/xml_node_gifti_label_table_from_annot.Rd | 36 tests/testthat.R | 8 tests/testthat/helper-functions-for-tests.R | 48 tests/testthat/teardown-cran.R | 20 tests/testthat/test-brainvoyager.R | 210 +- tests/testthat/test-cifti.R | 96 tests/testthat/test-gifti_writer.R | 36 tests/testthat/test-gifti_xml_tools.R | 66 tests/testthat/test-helpers.R | 36 tests/testthat/test-mgh2nii.R | 62 tests/testthat/test-mghheader.R | 474 ++-- tests/testthat/test-nifti_to_mgh.R | 90 tests/testthat/test-read_fs_annot.R | 364 +-- tests/testthat/test-read_fs_curv.R | 96 tests/testthat/test-read_fs_label.R | 196 - tests/testthat/test-read_fs_mgh.R | 354 +-- tests/testthat/test-read_fs_patch.R | 96 tests/testthat/test-read_fs_surface.R | 860 ++++---- tests/testthat/test-read_fs_transform.R | 120 - tests/testthat/test-read_fs_weight.R | 16 tests/testthat/test-read_nifti1.R | 202 - tests/testthat/test-read_nifti2.R | 146 - tests/testthat/test-read_nisurface.R | 240 +- tests/testthat/test-rotate3d.R | 186 - tests/testthat/test-surface_dist.R | 72 tests/testthat/test-write_fs_annot.R | 243 +- tests/testthat/test-write_fs_curv.R | 300 +- tests/testthat/test-write_fs_label.R | 116 - tests/testthat/test-write_fs_mgh.R | 376 +-- tests/testthat/test-write_fs_patch.R | 56 tests/testthat/test-write_fs_surface.R | 366 +-- tests/testthat/test-write_fs_weight.R | 90 tests/testthat/test-write_nifti1.R | 158 - tests/testthat/test-write_nifti2.R | 102 vignettes/freesurferformats.Rmd | 624 +++--- vignettes/freesurferformats_header.Rmd | 190 - vignettes/freesurferformats_write.Rmd | 314 +-- 303 files changed, 17001 insertions(+), 16997 deletions(-)
More information about freesurferformats at CRAN
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Title: Descriptive Statistical Analysis
Description: Description of statistical associations between variables : measures of local and global association between variables (phi, Cramér V, correlations, eta-squared, Goodman and Kruskal tau, permutation tests, etc.), multiple graphical representations of the associations between variables (using 'ggplot2') and weighted statistics.
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between descriptio versions 1.4.1 dated 2025-05-29 and 1.5 dated 2025-09-08
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++++++------ NAMESPACE | 3 ++- NEWS.md | 22 +++++++++++++++++++++- R/agg.wtd.mad.R |only R/agg.wtd.mean.R |only R/agg.wtd.quantile.R |only R/agg.wtd.var.R |only R/assoc.twocat.R | 10 +--------- R/assoc.twocat.by.R | 13 +++++++++---- R/weighted.cramer.R | 4 ++-- man/agg.wtd.mad.Rd |only man/agg.wtd.mean.Rd |only man/agg.wtd.quantile.Rd |only man/agg.wtd.var.Rd |only 15 files changed, 52 insertions(+), 26 deletions(-)