Title: Rank-Based Test to Evaluate a Surrogate Marker
Description: Uses a novel rank-based nonparametric approach to evaluate a surrogate marker
in a small sample size setting. Details are described in Parast et al (2024)
<doi:10.1093/biomtc/ujad035> and Hughes A et al (2025)
<doi:10.1002/sim.70241>. A tutorial for this package can be found at
<https://www.laylaparast.com/surrogaterank> and a Shiny App
implementing the package can be found at
<https://parastlab.shinyapps.io/SurrogateRankApp/>.
Author: Layla Parast [aut, cre],
Arthur Hughes [aut]
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateRank versions 2.0 dated 2025-05-20 and 2.1 dated 2025-09-10
DESCRIPTION | 8 +- MD5 | 8 +- R/ss_functions.R | 2 R/test.surrogate.extension.R | 8 ++ R/test.surrogate.rise.R | 130 ++++++++++++++++++++++++------------------- 5 files changed, 91 insertions(+), 65 deletions(-)
Title: Response Surface Designs with Neighbour Effects (rsdNE)
Description: Response surface designs with neighbour effects are suitable for experimental situations
where it is expected that the treatment combination administered to one experimental unit
may affect the response on neighboring units as well as the response on the unit to which it is applied (Dalal et al.,2025 <doi: 10.57805/revstat.v23i2.513>).
Integrating these effects in the response surface model improves the experiment's precision
Verma A., Jaggi S., Varghese, E.,Varghese, C.,Bhowmik, A., Datta, A. and Hemavathi M. (2021)<doi: 10.1080/03610918.2021.1890123>).
This package includes sym(), asym1(), asym2(), asym3() and asym4() functions that generates response surface designs which are rotatable under a
polynomial model of a given order without interaction term incorporating neighbour effects.
Author: Ashutosh Dalal [aut, cre],
Seema Jaggi [aut, ctb],
Eldho Varghese [aut, ctb],
Subhasish Sarkar [aut],
Arpan Bhowmik [aut],
Cini Varghese [aut],
Anindita Datta [aut],
Soumen Pal [aut]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between rsdNE versions 1.2.0 dated 2025-06-25 and 1.3.0 dated 2025-09-10
rsdNE-1.2.0/rsdNE/R/rsdNE.R |only rsdNE-1.3.0/rsdNE/DESCRIPTION | 9 +-- rsdNE-1.3.0/rsdNE/MD5 | 20 +++---- rsdNE-1.3.0/rsdNE/R/asym1.R |only rsdNE-1.3.0/rsdNE/R/asym2.R |only rsdNE-1.3.0/rsdNE/R/asym3.R | 30 +++++++--- rsdNE-1.3.0/rsdNE/R/asym4.R | 25 +++++---- rsdNE-1.3.0/rsdNE/R/sym.R |only rsdNE-1.3.0/rsdNE/man/asym1.Rd | 13 +++- rsdNE-1.3.0/rsdNE/man/asym2.Rd | 17 ++++-- rsdNE-1.3.0/rsdNE/man/asym3.Rd | 105 ++++++++++++++++++++------------------ rsdNE-1.3.0/rsdNE/man/asym4.Rd | 113 +++++++++++++++++++++-------------------- rsdNE-1.3.0/rsdNE/man/sym.Rd | 13 +++- 13 files changed, 200 insertions(+), 145 deletions(-)
Title: Regularized Bayesian Estimator for Two-Level Latent Variable
Models
Description: Implements a regularized Bayesian estimator that optimizes the estimation
of between-group coefficients for multilevel latent variable models by minimizing
mean squared error (MSE) and balancing variance and bias. The package provides more reliable
estimates in scenarios with limited data, offering a robust solution for accurate
parameter estimation in two-level latent variable models. It is designed for
researchers in psychology, education, and related fields who face challenges in
estimating between-group effects under small sample sizes and low intraclass
correlation coefficients. The package includes comprehensive S3 methods for result
objects: print(), summary(), coef(), se(), vcov(), confint(), as.data.frame(),
dim(), length(), names(), and update() for enhanced usability and integration
with standard R workflows. Dashuk et al. (2024) <doi:10.13140/RG.2.2.18148.39048>
derived the optimal regularized Bayesian estimator;
Dashuk et al. (2024) <doi:10.13140/RG.2.2.34350.0160 [...truncated...]
Author: Valerii Dashuk [aut, cre],
Binayak Timilsina [aut],
Martin Hecht [aut],
Steffen Zitzmann [aut]
Maintainer: Valerii Dashuk <vadashuk@gmail.com>
Diff between MultiLevelOptimalBayes versions 0.0.2.0 dated 2025-07-11 and 0.0.3.0 dated 2025-09-10
DESCRIPTION | 11 MD5 | 39 NAMESPACE | 10 R/estimation-bayes.R |only R/estimation-ml.R |only R/jackknife.R |only R/methods.R |only R/mlob.R | 1327 +------------------------ README.md | 252 ++++ inst/doc/MultiLevelOptimalBayes-Intro.R | 143 ++ inst/doc/MultiLevelOptimalBayes-Intro.Rmd | 437 +++++--- inst/doc/MultiLevelOptimalBayes-Intro.html | 378 ++++++- man/as.data.frame.mlob_result.Rd |only man/coef.mlob_result.Rd |only man/confint.mlob_result.Rd |only man/dim.mlob_result.Rd |only man/estimate_Bay_CV.Rd |only man/estimate_Bay_CV_SE_jackknife_individual.Rd |only man/estimate_ML_CV.Rd |only man/length.mlob_result.Rd |only man/mlob.Rd | 71 - man/names.mlob_result.Rd |only man/print.mlob_result.Rd |only man/se.Rd |only man/se.mlob_result.Rd |only man/summary.mlob_result.Rd |only man/update.mlob_result.Rd |only man/vcov.mlob_result.Rd |only tests/testthat/test-mlob.R | 17 vignettes/MultiLevelOptimalBayes-Intro.Rmd | 437 +++++--- 30 files changed, 1392 insertions(+), 1730 deletions(-)
More information about MultiLevelOptimalBayes at CRAN
Permanent link
Title: Bayesian Estimation of Multivariate Threshold Autoregressive
Models
Description: Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.
Author: Luis Hernando Vanegas [aut, cre],
Sergio Alejandro Calderon [aut],
Luz Marina Rondon [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between mtarm versions 0.1.6 dated 2025-07-14 and 0.1.7 dated 2025-09-10
DESCRIPTION | 7 MD5 | 12 - R/mtar.R | 375 +++++++++++++++++++++++++++++++++++++--------------- data/iceland.rf.rda |only man/forecasting.Rd | 12 - man/iceland.rf.Rd |only man/mtar.Rd | 10 + man/simtar.Rd | 12 - 8 files changed, 295 insertions(+), 133 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'EarthScope MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian.sharer@earthscope.org>
Diff between IRISMustangMetrics versions 2.4.7 dated 2024-12-11 and 2.4.8 dated 2025-09-10
DESCRIPTION | 6 ++--- MD5 | 26 +++++++++++------------ R/BSSUtils.R | 7 +----- R/PSDMetric.R | 5 +++- R/sampleRateRespMetric.R | 4 +-- R/transferFunctionMetric.R | 4 +-- man/IRISMustangMetrics-package.Rd | 42 ++++++++++++++++++++++---------------- man/SingleValueMetric-class.Rd | 2 - man/createBssUrl.Rd | 16 +++++++------- man/getGeneralValueMetrics.Rd | 4 +-- man/getMustangMetrics.Rd | 4 +-- man/getSingleValueMetrics.Rd | 2 - man/sampleRateChannelMetric.Rd | 42 +++++++++++++++++++------------------- man/sampleRateRespMetric.Rd | 2 - 14 files changed, 88 insertions(+), 78 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: GDP - Workflow Management
Description: Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply
with Good Documentation Practice (GDP),
with ALCOA+ principles as proposed by the U.S. FDA, and
with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.
Author: Gregoire Thomas [aut, cre]
Maintainer: Gregoire Thomas <gregoire.thomas@SQU4RE.com>
Diff between D4TAlink.light versions 2.1.18 dated 2025-04-02 and 2.1.21 dated 2025-09-10
DESCRIPTION | 15 +-- MD5 | 47 +++++---- NAMESPACE | 20 +++- NEWS | 18 +++ R/initTask.R | 77 +++++++-------- R/listTasks.R | 139 ++++++++++++++-------------- R/loadTask.R | 3 R/sqlite.R |only R/taskArchive.R | 187 +++++++++++++++++++------------------- R/taskFiles.R | 16 ++- R/taskQuarto.R |only R/taskRmarkdown.R | 18 ++- build/vignette.rds |binary inst/doc/D4TAlink_basics.html | 4 inst/doc/D4TAlink_quickstart.html | 4 inst/template/SQU4REtemplate.Qmd |only man/getTaskQmdTemplate.Rd |only man/initTaskQmd.Rd |only man/jpegReport.Rd | 62 +++++++----- man/pdfReport.Rd | 51 ++++++---- man/pngReport.Rd | 60 ++++++------ man/qmdFn.Rd |only man/querySQLite.Rd |only man/readReportTable.Rd | 9 + man/readSQLite.Rd |only man/renderTaskQmd.Rd |only man/saveSQLite.Rd |only man/scanReport.Rd | 14 +- man/setTaskQmdTemplate.Rd |only tests/testthat/test01.R | 163 ++++++++++++++++++--------------- 30 files changed, 507 insertions(+), 400 deletions(-)
More information about D4TAlink.light at CRAN
Permanent link
Title: Integrates with the 'RStudio' Connections Pane and 'pins'
Description: Enables 'DBI' compliant packages to integrate with the 'RStudio' connections
pane, and the 'pins' package. It automates the display of schemata, tables, views, as well
as the preview of the table's top 1000 records.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between connections versions 0.2.0 dated 2023-12-18 and 0.2.1 dated 2025-09-10
DESCRIPTION | 8 ++++---- MD5 | 21 ++++++++++++--------- NAMESPACE | 6 ++++++ NEWS.md |only R/connection-close.R | 6 ++---- R/connection-pin-read.R | 8 ++++++++ R/connection-pin-write.R | 8 ++++++++ R/connection-view.R | 9 +++------ R/dbi-methods.R | 2 ++ README.md | 28 +++++++++++++++------------- man/DBI.Rd | 5 ++--- man/read_pin_conn.Rd |only man/write_pin_conn.Rd |only 13 files changed, 62 insertions(+), 39 deletions(-)
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the quality of the reduction.
Author: Jose C. Faria [aut, cre],
Ivan B. Allaman [aut],
Clarice G. B. Demetrio [aut]
Maintainer: Jose C. Faria <joseclaudio.faria@gmail.com>
Diff between bpca versions 1.3-6 dated 2023-11-20 and 1.3-8 dated 2025-09-10
DESCRIPTION | 9 +++++---- MD5 | 18 +++++++++--------- NEWS | 6 ++++++ build/vignette.rds |binary inst/doc/latex-bpca.Rnw | 2 +- inst/doc/latex-bpca.pdf |binary man/bpca.Rd | 2 +- man/print.xtable.Rd | 5 ++++- man/xtable.bpca.Rd | 8 ++++---- vignettes/latex-bpca.Rnw | 2 +- 10 files changed, 31 insertions(+), 21 deletions(-)
Title: Shared Memory Multithreading
Description: This project extends 'R' with a mechanism for efficient parallel data access by utilizing 'C++' shared memory. Large data objects can be accessed and manipulated directly from 'R' without redundant copying, providing both speed and memory efficiency.
Author: Julian Maerte [aut, ctr] ,
Romain Francois [ctb],
Michael Thrun [aut, ths, rev, cph, cre]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between memshare versions 1.0.1 dated 2025-09-09 and 1.0.2 dated 2025-09-10
DESCRIPTION | 11 - MD5 | 41 ++-- R/memApply.R | 471 +++++++++++++++++++++++------------------------ R/memLapply.R | 326 ++++++++++++++++---------------- README.md |only build/partial.rdb |binary man/memApply.Rd | 97 ++++----- man/memLapply.Rd | 98 ++++----- man/memshare-package.Rd | 123 +++++++----- man/memshare_gc.Rd | 7 man/pageList.Rd | 82 ++++---- man/registerVariables.Rd | 2 man/releaseVariables.Rd | 2 man/releaseViews.Rd | 2 man/retrieveMetadata.Rd | 2 man/retrieveViews.Rd | 132 ++++++------- man/viewList.Rd | 10 src/Makevars | 6 src/Makevars.win | 7 src/memory_page.cpp | 6 src/register.cpp | 2 src/retrieve.cpp | 4 22 files changed, 735 insertions(+), 696 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See <doi:10.7717/peerj.8451> for tsd functions; see <doi:10.1016/j.jtherbio.2014.08.005> for thermal reaction norm of embryo growth.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between embryogrowth versions 10.3 dated 2025-08-19 and 10.4 dated 2025-09-10
DESCRIPTION | 12 MD5 | 22 - NEWS | 4 R/HeterogeneityNests.R | 10 R/STRN.R | 5 R/embryogrowth-package.R | 4 R/info.nests.R | 729 +++++++++++++------------------------------- build/partial.rdb |binary man/HeterogeneityNests.Rd | 3 man/STRN.Rd | 5 man/embryogrowth-package.Rd | 4 man/info.nests.Rd | 3 12 files changed, 260 insertions(+), 541 deletions(-)
Title: Data Table Back-End for 'dplyr'
Description: Provides a data.table backend for 'dplyr'. The goal of
'dtplyr' is to allow you to write 'dplyr' code that is automatically
translated to the equivalent, but usually much faster, data.table
code.
Author: Hadley Wickham [cre, aut],
Maximilian Girlich [aut],
Mark Fairbanks [aut],
Ryan Dickerson [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between dtplyr versions 1.3.1 dated 2023-03-22 and 1.3.2 dated 2025-09-10
DESCRIPTION | 10 LICENSE | 2 MD5 | 98 ++++---- NAMESPACE | 5 NEWS.md | 31 ++ R/count.R | 3 R/reframe.R |only R/step-call.R | 1 R/step-first.R | 19 - R/step-group.R | 2 R/step-join.R | 3 R/step-mutate.R | 3 R/step-set.R | 6 R/step-subset-transmute.R | 45 ---- R/step-subset.R | 4 R/step.R | 15 + R/tidyeval-across.R | 4 R/tidyeval.R | 75 +++++- README.md | 30 +- build/vignette.rds |binary inst/doc/translation.R | 2 inst/doc/translation.html | 305 ++++++++++++++-------------- man/arrange.dtplyr_step.Rd | 7 man/count.dtplyr_step.Rd | 7 man/distinct.dtplyr_step.Rd | 6 man/figures/dt-seal.png |only man/figures/logo.png |binary man/filter.dtplyr_step.Rd | 11 - man/group_by.dtplyr_step.Rd | 2 man/group_modify.dtplyr_step.Rd | 2 man/intersect.dtplyr_step.Rd | 6 man/lazy_dt.Rd | 21 - man/left_join.dtplyr_step.Rd | 4 man/mutate.dtplyr_step.Rd | 4 man/reframe.dtplyr_step.Rd |only man/relocate.dtplyr_step.Rd | 2 man/rename.dtplyr_step.Rd | 2 man/select.dtplyr_step.Rd | 2 man/slice.dtplyr_step.Rd | 12 - man/summarise.dtplyr_step.Rd | 6 man/transmute.dtplyr_step.Rd | 4 tests/testthat/_snaps/step-call.md | 9 tests/testthat/_snaps/step.md | 62 +++++ tests/testthat/test-reframe.R |only tests/testthat/test-step-call.R | 5 tests/testthat/test-step-group.R | 10 tests/testthat/test-step-join.R | 2 tests/testthat/test-step-mutate.R | 20 + tests/testthat/test-step-subset-summarise.R | 5 tests/testthat/test-step-subset-transmute.R | 247 +--------------------- tests/testthat/test-step.R | 12 + tests/testthat/test-tidyeval.R | 63 +++++ 52 files changed, 581 insertions(+), 615 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data
distributions are visualized. This package offers a flexible,
layer-based, and easy to use approach to create thematic maps, such as
choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb],
Olivier Roy [ctb],
Edzer Pebesma [ctb],
Hugh [...truncated...]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 4.1 dated 2025-05-12 and 4.2 dated 2025-09-10
tmap-4.1/tmap/R/tm_comp_group.R |only tmap-4.1/tmap/R/tmapGridLines.R |only tmap-4.1/tmap/R/tmapGridPolygons.R |only tmap-4.1/tmap/R/tmapGridRaster.R |only tmap-4.1/tmap/R/tmapGridSymbols.R |only tmap-4.1/tmap/R/tmapGridText.R |only tmap-4.1/tmap/R/tmapLeafletComp_charts.R |only tmap-4.1/tmap/man/reexports.Rd |only tmap-4.1/tmap/man/tm_comp_group.Rd |only tmap-4.2/tmap/DESCRIPTION | 29 tmap-4.2/tmap/MD5 | 256 +++---- tmap-4.2/tmap/NAMESPACE | 172 +++- tmap-4.2/tmap/NEWS.md | 13 tmap-4.2/tmap/R/docs.R | 8 tmap-4.2/tmap/R/global-variables.R | 6 tmap-4.2/tmap/R/misc_comp.R | 56 - tmap-4.2/tmap/R/misc_crs.R | 57 + tmap-4.2/tmap/R/misc_options.R | 9 tmap-4.2/tmap/R/misc_other.R | 7 tmap-4.2/tmap/R/misc_pointLabel.R | 127 +-- tmap-4.2/tmap/R/misc_stars.R | 6 tmap-4.2/tmap/R/print.R | 9 tmap-4.2/tmap/R/process_breaks.R | 85 ++ tmap-4.2/tmap/R/process_meta.R | 66 + tmap-4.2/tmap/R/qtm.R | 2 tmap-4.2/tmap/R/shapeTM.R | 2 tmap-4.2/tmap/R/spatial_sf.R | 35 tmap-4.2/tmap/R/spatial_stars.R | 17 tmap-4.2/tmap/R/spatial_terra.R | 4 tmap-4.2/tmap/R/step1_helper_facets.R | 116 +-- tmap-4.2/tmap/R/step1_helper_meta.R | 68 + tmap-4.2/tmap/R/step1_rearrange.R | 43 + tmap-4.2/tmap/R/step2_data.R | 36 - tmap-4.2/tmap/R/step2_helper_facets.R | 11 tmap-4.2/tmap/R/step4_plot.R | 235 +++++- tmap-4.2/tmap/R/tm_add_legend.R | 13 tmap-4.2/tmap/R/tm_animate.R | 26 tmap-4.2/tmap/R/tm_chart.R | 6 tmap-4.2/tmap/R/tm_component_functions.R |only tmap-4.2/tmap/R/tm_components.R | 314 +------- tmap-4.2/tmap/R/tm_crs.R | 12 tmap-4.2/tmap/R/tm_facets.R | 7 tmap-4.2/tmap/R/tm_inset.R | 11 tmap-4.2/tmap/R/tm_label_format.R |only tmap-4.2/tmap/R/tm_layers_aux.R | 35 tmap-4.2/tmap/R/tm_layers_lines.R | 3 tmap-4.2/tmap/R/tm_layers_polygons.R | 14 tmap-4.2/tmap/R/tm_layers_raster.R | 3 tmap-4.2/tmap/R/tm_layers_symbols.R | 8 tmap-4.2/tmap/R/tm_layers_text.R | 1 tmap-4.2/tmap/R/tm_layout.R | 10 tmap-4.2/tmap/R/tm_legend.R | 13 tmap-4.2/tmap/R/tm_options.R | 2 tmap-4.2/tmap/R/tm_pos.R | 2 tmap-4.2/tmap/R/tm_scale_.R | 20 tmap-4.2/tmap/R/tm_shape.R | 5 tmap-4.2/tmap/R/tmapChart.R | 2 tmap-4.2/tmap/R/tmapGridAux.R | 878 ------------------------- tmap-4.2/tmap/R/tmapGridAux_grid.R |only tmap-4.2/tmap/R/tmapGridAux_tiles.R |only tmap-4.2/tmap/R/tmapGridComp.R | 84 +- tmap-4.2/tmap/R/tmapGridComp_charts.R | 36 - tmap-4.2/tmap/R/tmapGridComp_funs.R | 206 +++-- tmap-4.2/tmap/R/tmapGridComp_leg_landscape.R | 94 ++ tmap-4.2/tmap/R/tmapGridComp_leg_portrait.R | 106 ++- tmap-4.2/tmap/R/tmapGridDataPlot.R |only tmap-4.2/tmap/R/tmapGridDataPlot_lines.R |only tmap-4.2/tmap/R/tmapGridDataPlot_polygons.R |only tmap-4.2/tmap/R/tmapGridDataPlot_raster.R |only tmap-4.2/tmap/R/tmapGridDataPlot_symbols.R |only tmap-4.2/tmap/R/tmapGridDataPlot_text.R |only tmap-4.2/tmap/R/tmapGridInit.R | 49 - tmap-4.2/tmap/R/tmapGridRun.R | 14 tmap-4.2/tmap/R/tmapGridShape.R | 151 +++- tmap-4.2/tmap/R/tmapGridWrap.R | 2 tmap-4.2/tmap/R/tmapLeafletAux.R | 85 ++ tmap-4.2/tmap/R/tmapLeafletComp.R | 63 + tmap-4.2/tmap/R/tmapLeafletComp_funs.R | 61 + tmap-4.2/tmap/R/tmapLeafletComp_leg_portrait.R | 43 - tmap-4.2/tmap/R/tmapLeafletDataPlot_lines.R |only tmap-4.2/tmap/R/tmapLeafletDataPlot_polygons.R |only tmap-4.2/tmap/R/tmapLeafletDataPlot_raster.R |only tmap-4.2/tmap/R/tmapLeafletDataPlot_symbols.R |only tmap-4.2/tmap/R/tmapLeafletDataPlot_text.R |only tmap-4.2/tmap/R/tmapLeafletRun.R | 6 tmap-4.2/tmap/R/tmapLeaflet_layers.R | 522 -------------- tmap-4.2/tmap/R/tmapOnLoad.R | 1 tmap-4.2/tmap/R/tmapScaleBivariate.R | 2 tmap-4.2/tmap/R/tmapScaleCategorical.R | 16 tmap-4.2/tmap/R/tmapScaleContinuous.R | 8 tmap-4.2/tmap/R/tmapScaleDiscrete.R | 2 tmap-4.2/tmap/R/tmapScaleIntervals.R | 95 ++ tmap-4.2/tmap/R/tmapScale_.R | 4 tmap-4.2/tmap/R/tmapScale_misc.R | 2 tmap-4.2/tmap/R/tmapTrans.R | 4 tmap-4.2/tmap/R/tmap_animation.R | 53 + tmap-4.2/tmap/R/tmap_export.R | 3 tmap-4.2/tmap/R/tmap_mode.R | 89 +- tmap-4.2/tmap/R/tmap_options.R | 104 ++ tmap-4.2/tmap/R/tmap_options_defaults.R | 111 +-- tmap-4.2/tmap/R/tmap_overview.R |only tmap-4.2/tmap/R/tmap_save.R | 2 tmap-4.2/tmap/R/tmap_style.R | 4 tmap-4.2/tmap/R/tmap_style_catalogue.R | 101 +- tmap-4.2/tmap/build/partial.rdb |binary tmap-4.2/tmap/man/tm_add_legend.Rd | 5 tmap-4.2/tmap/man/tm_animate.Rd | 27 tmap-4.2/tmap/man/tm_basemap.Rd | 4 tmap-4.2/tmap/man/tm_chart.Rd | 4 tmap-4.2/tmap/man/tm_compass.Rd | 6 tmap-4.2/tmap/man/tm_components.Rd |only tmap-4.2/tmap/man/tm_credits.Rd | 6 tmap-4.2/tmap/man/tm_crs.Rd | 4 tmap-4.2/tmap/man/tm_facets.Rd | 1 tmap-4.2/tmap/man/tm_inset.Rd | 29 tmap-4.2/tmap/man/tm_label_format.Rd |only tmap-4.2/tmap/man/tm_layout.Rd | 734 -------------------- tmap-4.2/tmap/man/tm_legend.Rd | 18 tmap-4.2/tmap/man/tm_lines.Rd | 5 tmap-4.2/tmap/man/tm_logo.Rd | 6 tmap-4.2/tmap/man/tm_minimap.Rd | 53 + tmap-4.2/tmap/man/tm_mouse_coordinates.Rd | 6 tmap-4.2/tmap/man/tm_options.Rd | 47 - tmap-4.2/tmap/man/tm_polygons.Rd | 5 tmap-4.2/tmap/man/tm_scale_bar.Rd | 6 tmap-4.2/tmap/man/tm_scale_categorical.Rd | 2 tmap-4.2/tmap/man/tm_scale_continuous.Rd | 4 tmap-4.2/tmap/man/tm_scale_discrete.Rd | 2 tmap-4.2/tmap/man/tm_scale_intervals.Rd | 10 tmap-4.2/tmap/man/tm_scale_rank.Rd | 4 tmap-4.2/tmap/man/tm_scalebar.Rd | 6 tmap-4.2/tmap/man/tm_shape.Rd | 2 tmap-4.2/tmap/man/tm_symbols.Rd | 7 tmap-4.2/tmap/man/tm_title.Rd | 6 tmap-4.2/tmap/man/tm_view.Rd | 2 tmap-4.2/tmap/man/tmapAddLayerOptions.Rd | 4 tmap-4.2/tmap/man/tmapGridLeaflet.Rd |only tmap-4.2/tmap/man/tmapMode.Rd | 6 tmap-4.2/tmap/man/tmapSubmitOptions.Rd |only tmap-4.2/tmap/man/tmap_animation.Rd | 20 tmap-4.2/tmap/man/tmap_design_mode.Rd | 8 tmap-4.2/tmap/man/tmap_internal.Rd | 195 ----- tmap-4.2/tmap/man/tmap_options.Rd | 49 - tmap-4.2/tmap/man/tmap_overview.Rd |only 144 files changed, 2476 insertions(+), 3800 deletions(-)
Title: Materials for Introductory Course on Bayesian Learning
Description: Practicals, data sets, helper functions and interactive 'Shiny' apps
used in the introductory course on Bayesian inference at the
Valencia International Bayesian Summer School. Installing 'vibass' installs
all the other packages used during the course and downloads all necessary
materials for working off line.
Author: VIBASS Team [aut, cph],
Facundo Munoz [ctb, cre] ,
Carmen Armero [ctb] ,
Anabel Forte [ctb] ,
David Conesa [ctb] ,
Mark Brewer [ctb] ,
ORCID: <https://orcid.org/0000-0001-7559-389X>),
Virgilio Gomez-Rubio [ctb]
Maintainer: Facundo Munoz <facundo.munoz@cirad.fr>
Diff between vibass versions 1.0.1 dated 2025-07-07 and 1.0.3 dated 2025-09-10
DESCRIPTION | 15 ++++++----- MD5 | 64 +++++++++++++++++++++++++------------------------ NEWS.md | 16 +++++++++++- R/vibass_app.R | 2 - README.md | 17 ++++++------- inst/WORDLIST |only inst/doc/p1.R | 10 +++---- inst/doc/p1.Rmd | 10 +++---- inst/doc/p1.html | 14 +++++----- inst/doc/p2count.Rmd | 4 +-- inst/doc/p2count.html | 16 ++++++------ inst/doc/p2normal.Rmd | 2 - inst/doc/p2normal.html | 28 ++++++++++----------- inst/doc/p3.Rmd | 4 +-- inst/doc/p3.html | 14 +++++----- inst/doc/p4.Rmd | 2 - inst/doc/p4.html | 14 +++++----- inst/doc/p5.html | 24 +++++++++--------- inst/doc/p6.Rmd | 2 - inst/doc/p6.html | 20 +++++++-------- inst/doc/p7.Rmd | 4 +-- inst/doc/p7.html | 16 ++++++------ inst/doc/p8.Rmd | 2 - inst/doc/p8.html | 3 +- man/vibass_app.Rd | 2 - tests |only vignettes/p1.Rmd | 10 +++---- vignettes/p2count.Rmd | 4 +-- vignettes/p2normal.Rmd | 2 - vignettes/p3.Rmd | 4 +-- vignettes/p4.Rmd | 2 - vignettes/p6.Rmd | 2 - vignettes/p7.Rmd | 4 +-- vignettes/p8.Rmd | 2 - 34 files changed, 176 insertions(+), 159 deletions(-)
Title: SQL Interface to 'Snowflake', 'Redshift', 'Postgres', 'SQLite',
and 'DuckDB'
Description: Run 'SQL' queries across 'Snowflake', 'Amazon Redshift', 'PostgreSQL', 'SQLite', and 'DuckDB' from R with a single function. Optionally stream and cache large query results to a local 'DuckDB' database for efficient work with larger-than-memory datasets.
Author: Dani Mermelstein [aut, cre, cph]
Maintainer: Dani Mermelstein <dmermelstein@hey.com>
Diff between snowquery versions 1.2.1 dated 2024-10-02 and 1.3.0 dated 2025-09-10
DESCRIPTION | 16 +- MD5 | 19 +- NAMESPACE | 6 NEWS.md | 15 ++ R/cache_table.R |only R/queryDB.R | 291 +++++++++++++++--------------------------- R/snowquery-package.R | 10 + R/utils.R |only README.md | 166 +++++++++++++++++++---- man/dot-cache_query_result.Rd |only man/queryDB.Rd | 28 ++-- man/snowquery-package.Rd | 4 12 files changed, 306 insertions(+), 249 deletions(-)
Title: Robust Bayesian Meta-Analyses
Description: A framework for estimating ensembles of meta-analytic, meta-regression, and
multilevel models (assuming either presence or absence of the effect, heterogeneity,
publication bias, and moderators). The RoBMA framework uses Bayesian model-averaging to
combine the competing meta-analytic models into a model ensemble, weights
the posterior parameter distributions based on posterior model probabilities
and uses Bayes factors to test for the presence or absence of the
individual components (e.g., effect vs. no effect; Bartoš et al., 2022,
<doi:10.1002/jrsm.1594>; Maier, Bartoš & Wagenmakers, 2022,
<doi:10.1037/met0000405>; Bartoš et al., 2025, <doi:10.1037/met0000737>).
Users can define a wide range of prior distributions for the effect size, heterogeneity,
publication bias (including selection models and PET-PEESE), and moderator components.
The package provides convenient functions for summary, visualizations, and fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Eric-Jan Wagenmakers [ths] ,
Joris Goosen [ctb],
Matthew Denwood [cph] ,
Martyn Plummer [cph]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBMA versions 3.5.1 dated 2025-07-28 and 3.6.0 dated 2025-09-10
DESCRIPTION | 6 MD5 | 143 +++++----- NAMESPACE | 9 NEWS.md | 7 R/check-input-and-settings.R | 52 ++- R/check-priors-and-models.R | 30 +- R/datasets.R | 73 +++++ R/diagnostics.R | 6 R/distributions.R | 391 ++++++++++++++++++++++----- R/fit-and-marglik.R | 122 ++++++-- R/inference-and-model-averaging.R | 58 +++- R/marginal.R | 16 - R/plots.R | 396 +++++++++++++++++++++++++++- R/predict.R | 39 +- R/residuals.R |only R/summary-effect.R | 4 R/summary.R | 48 ++- R/tools.R | 183 ++++++++++-- R/transformations.R | 246 ++++++++++++++--- R/utilities.R | 1 R/zcurve.R |only README.md | 58 +++- build/partial.rdb |binary build/vignette.rds |binary data/Hoppen2025.RData |only data/ManyLabs16.RData |only data/Wang2025.RData |only data/Weingarten2018.RData |only inst/REFERENCES.bib | 92 ++++++ inst/doc/CustomEnsembles.html | 9 inst/doc/FastRoBMA.html | 9 inst/doc/HierarchicalBMA.html | 9 inst/doc/MedicineBMA.html | 9 inst/doc/MedicineBiBMA.html | 9 inst/doc/MetaRegression.html | 9 inst/doc/ReproducingBMA.html | 9 inst/doc/Tutorial.html | 5 inst/doc/ZCurveDiagnostics.R |only inst/doc/ZCurveDiagnostics.Rmd |only inst/doc/ZCurveDiagnostics.html |only man/Hoppen2025.Rd |only man/ManyLabs16.Rd |only man/RoBMA-package.Rd | 84 ++--- man/RoBMA_control.Rd | 44 ++- man/RoBMA_options.Rd | 54 +-- man/Wang2025.Rd |only man/Weingarten2018.Rd |only man/as_zcurve.Rd |only man/effect_sizes.Rd | 186 ++++++------- man/figures/README-fig_PETPEESE-1.png |binary man/figures/README-fig_forest-1.png |binary man/figures/README-fig_mu-1.png |binary man/figures/README-fig_mu_chain-1.png |binary man/figures/README-fig_mu_ind-1.png |binary man/figures/README-fig_tau-1.png |binary man/figures/README-fig_weightfunction-1.png |binary man/forest.Rd | 144 +++++----- man/funnel.Rd |only man/hist.zcurve_RoBMA.Rd |only man/interpret.Rd | 42 +- man/is.RoBMA.Rd | 34 ++ man/lines.zcurve_RoBMA.Rd |only man/plot.RoBMA.Rd | 218 +++++++-------- man/plot.zcurve_RoBMA.Rd |only man/plot_models.Rd | 164 +++++------ man/predict.RoBMA.Rd | 3 man/print.RoBMA.Rd | 44 +-- man/print.marginal_summary.RoBMA.Rd | 6 man/print.summary.RoBMA.Rd | 44 +-- man/print.summary.zcurve_RoBMA.Rd |only man/print.zcurve_RoBMA.Rd |only man/prior.Rd | 170 ++++++------ man/prior_PEESE.Rd | 156 +++++------ man/prior_PET.Rd | 156 +++++------ man/prior_none.Rd | 80 ++--- man/prior_weightfunction.Rd | 124 ++++---- man/residuals.RoBMA.Rd |only man/sample_sizes.Rd | 120 ++++---- man/set_default_priors.Rd | 150 +++++----- man/standard_errors.Rd | 190 ++++++------- man/summary.zcurve_RoBMA.Rd |only man/weighted_multivariate_normal.Rd | 72 ++--- man/weighted_normal.Rd | 8 vignettes/ZCurveDiagnostics.Rmd |only 84 files changed, 2886 insertions(+), 1455 deletions(-)
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R. The corpus analysis platform 'KorAP' has been developed as a scientific tool to make potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo' or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify hypotheses and to find interesting patterns in real language use. The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code, as a programmatic alternative to the 'KorAP' web user-interface. You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 1.1.0 dated 2025-06-26 and 1.2.0 dated 2025-09-10
DESCRIPTION | 13 MD5 | 33 - NAMESPACE | 1 NEWS.md | 8 R/KorAPConnection.R | 14 R/KorAPQuery.R | 757 +++++++++++++++++++++++++++++- demo/00Index | 1 demo/corpus_size_by_year.R |only demo/data/regions.rds |binary demo/regional.R | 152 +++++- man/KorAPConnection-class.Rd | 4 man/corpusQuery-KorAPConnection-method.Rd | 1 man/fetchAll-KorAPQuery-method.Rd | 1 man/fetchAnnotations-KorAPQuery-method.Rd |only man/fetchAnnotations.Rd |only man/fetchNext-KorAPQuery-method.Rd | 3 man/parse_xml_annotations.Rd |only man/parse_xml_annotations_structured.Rd |only tests/testthat/test-fetchAnnotations.R |only tests/testthat/test-parse-annotations.R |only tests/testthat/test-readme-against-llm.R |only tests/testthat/test-verbose-env.R |only 22 files changed, 948 insertions(+), 40 deletions(-)
Title: Reconstruction of Daily Data - Precipitation
Description: Applies quality control to daily precipitation observations;
reconstructs the original series by estimating precipitation in missing values; and
creates gridded datasets of daily precipitation.
Author: Roberto Serrano-Notivoli [aut, cre] ,
Adrian Huerta [aut] ,
Abel Centella [ctb]
Maintainer: Roberto Serrano-Notivoli <roberto.serrano@unizar.es>
Diff between reddPrec versions 3.0.0 dated 2025-04-24 and 3.0.1 dated 2025-09-10
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NAMESPACE | 1 + R/stand_qq.R | 22 +++++++++++++++++----- 4 files changed, 28 insertions(+), 15 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between parameters versions 0.28.1 dated 2025-08-30 and 0.28.2 dated 2025-09-10
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/methods_marginaleffects.R | 7 +++++++ inst/doc/overview_of_vignettes.Rmd | 7 ++++--- inst/doc/overview_of_vignettes.html | 6 ++++-- tests/testthat/test-model_parameters.efa_cfa.R | 1 + tests/testthat/test-model_parameters.fixest.R | 12 ++++++++---- vignettes/overview_of_vignettes.Rmd | 7 ++++--- 9 files changed, 45 insertions(+), 23 deletions(-)
Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition
Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/>.
Author: Christopher Endres [aut],
Laha Ale [aut] ,
Robert Gentleman [aut],
Deepayan Sarkar [aut, cre]
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between nhanesA versions 1.3 dated 2025-01-10 and 1.4 dated 2025-09-10
DESCRIPTION | 26 MD5 | 84 +- NAMESPACE | 90 +- NEWS.md | 112 +- R/db_util.R | 346 ++++----- R/nhanes.R | 1174 +++++++++++++++--------------- R/nhanesDB.R | 792 ++++++++++---------- R/nhanes_codebook.R | 368 ++++----- R/nhanes_constants.R | 202 ++--- R/nhanes_internal_functions.R | 188 ++-- R/nhanes_manifest.R | 762 ++++++++++--------- R/nhanes_options.R | 98 +- R/nhanes_search.R | 800 ++++++++++---------- R/nhanes_tables.R | 456 +++++------ R/nhanes_translate.R | 958 ++++++++++++------------- R/zzz.R | 102 +- README.md | 204 ++--- build/vignette.rds |binary inst/CITATION | 20 inst/doc/Introducing_nhanesA.R | 496 ++++++------- inst/doc/Introducing_nhanesA.Rmd | 752 +++++++++---------- inst/doc/Introducing_nhanesA.html | 1441 ++++++++++++++++++------------------- inst/doc/UsingSurveyWeights.R | 764 ++++++++++---------- inst/doc/UsingSurveyWeights.html | 1449 +++++++++++++++++++------------------- inst/doc/UsingSurveyWeights.rmd | 1026 +++++++++++++------------- man/browseNHANES.Rd | 100 +- man/nhanes.Rd | 120 +-- man/nhanesAttr.Rd | 90 +- man/nhanesCodebook.Rd | 74 - man/nhanesCodebookFromURL.Rd | 40 - man/nhanesDXA.Rd | 78 +- man/nhanesFromURL.Rd | 122 +-- man/nhanesManifest.Rd | 212 ++--- man/nhanesOptions.Rd | 86 +- man/nhanesSearch.Rd | 124 +-- man/nhanesSearchTableNames.Rd | 106 +- man/nhanesSearchVarName.Rd | 92 +- man/nhanesTableSummary.Rd | 90 +- man/nhanesTableVars.Rd | 94 +- man/nhanesTables.Rd | 108 +- man/nhanesTranslate.Rd | 142 +-- vignettes/Introducing_nhanesA.Rmd | 752 +++++++++---------- vignettes/UsingSurveyWeights.rmd | 1026 +++++++++++++------------- 43 files changed, 8086 insertions(+), 8080 deletions(-)
Title: Helper Functions for 'Interactive Tree Of Life'
Description: The 'Interactive Tree Of Life' <https://itol.embl.de/> online server can
edit and annotate trees interactively. The 'itol.toolkit' package can
support all types of annotation templates.
Author: Tong Zhou [aut, cre]
Maintainer: Tong Zhou <tongzhou2017@gmail.com>
Diff between itol.toolkit versions 1.1.7 dated 2023-11-18 and 1.1.12 dated 2025-09-10
DESCRIPTION | 15 +- MD5 | 34 +++- NAMESPACE | 31 ++++ R/addins.R | 2 R/color.R |only R/globals.R |only R/learn.R | 8 - R/object.R | 5 R/output.R | 23 ++- R/tree.R |only R/user.R | 250 ++++++++++++++++++++++++++++++----- R/utils.R | 116 ++++++++++++++++ R/zzz.R |only README.md | 129 +++++++++++++++++- inst/doc/Get_Start.R | 282 ++++++++++++++++++++-------------------- man/color_distance.Rd |only man/correct_type.Rd |only man/df_tree.Rd |only man/dt_transpose_header.Rd |only man/gradient_color.Rd |only man/longest_continuous_match.Rd |only man/sort_color.Rd |only man/vector_tree.Rd |only man/write_hub.Rd | 4 24 files changed, 686 insertions(+), 213 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.3.2 dated 2025-07-09 and 1.3.3 dated 2025-09-10
DESCRIPTION | 9 MD5 | 149 ++-- NEWS.md | 35 + R/Result.R | 3 R/cpp11.R | 4 R/dbConnect__duckdb_driver.R | 6 R/dbGetInfo__duckdb_connection.R | 3 R/dbIsValid__duckdb_connection.R | 14 R/duckdb.R | 49 + R/rethrow-gen.R | 10 R/rethrow.R | 8 R/test-fixtures.R |only R/version.R |only R/zzz.R | 2 README.md | 4 configure | 13 configure.win | 12 man/duckdb.Rd | 6 src/altrepdataframe_relation.cpp | 11 src/connection.cpp | 32 - src/convert.cpp | 6 src/cpp11.cpp | 8 src/database.cpp | 17 src/duckdb.tar.xz |binary src/include/rapi.hpp | 18 src/include/rfuns_extension.hpp | 4 src/include/signal.hpp | 11 src/include/typesr.hpp | 2 src/register.cpp | 45 - src/register.dd | 1 src/relational.cpp | 56 + src/reltoaltrep.cpp | 43 - src/rfuns.cpp | 397 +++++-------- src/scan.cpp | 83 +- src/signal.cpp | 17 src/statement.cpp | 72 +- src/transform.cpp | 69 +- src/types.cpp | 15 src/utils.cpp | 56 + tests/testthat/_snaps/array.md | 9 tests/testthat/_snaps/error-handling.md |only tests/testthat/_snaps/multi_statement.md | 3 tests/testthat/_snaps/relational.md | 18 tests/testthat/_snaps/types.md | 45 + tests/testthat/test-ambiguous_prepare.R | 3 tests/testthat/test-array.R | 131 ++-- tests/testthat/test-arrow.R | 9 tests/testthat/test-backend-dbplyr__duckdb_connection.R | 57 - tests/testthat/test-bind.R | 12 tests/testthat/test-date.R | 3 tests/testthat/test-dbQuoteIdentifier__duckdb_connection.R | 6 tests/testthat/test-dbinfo.R | 3 tests/testthat/test-dbwritetable.R | 3 tests/testthat/test-error-handling.R |only tests/testthat/test-explain.R | 15 tests/testthat/test-extension_path.R | 5 tests/testthat/test-factor.R | 15 tests/testthat/test-fetch.R | 3 tests/testthat/test-fetch_arrow.R | 30 tests/testthat/test-fixtures.R |only tests/testthat/test-integer64.R | 6 tests/testthat/test-interval.R | 3 tests/testthat/test-list.R | 6 tests/testthat/test-map.R | 6 tests/testthat/test-multi_statement.R | 14 tests/testthat/test-null_byte.R | 3 tests/testthat/test-parquet.R | 15 tests/testthat/test-read.R | 8 tests/testthat/test-register.R | 14 tests/testthat/test-register_arrow.R | 60 - tests/testthat/test-relational.R | 4 tests/testthat/test-scan.R | 21 tests/testthat/test-struct.R | 12 tests/testthat/test-tbl__duckdb_connection.R | 23 tests/testthat/test-timestamp.R | 6 tests/testthat/test-timezone.R | 69 +- tests/testthat/test-types.R | 27 tests/testthat/test-viewer.R | 17 78 files changed, 1134 insertions(+), 840 deletions(-)
Title: Spatial Parallel Computing by Hierarchical Data Partitioning
Description: Geospatial data computation is parallelized by grid, hierarchy,
or raster files. Based on 'future' (Bengtsson, 2024 <doi:10.32614/CRAN.package.future>)
and 'mirai' (Gao et al., 2025 <doi:10.32614/CRAN.package.mirai>) parallel back-ends,
'terra' (Hijmans et al., 2025 <doi:10.32614/CRAN.package.terra>) and
'sf' (Pebesma et al., 2024 <doi:10.32614/CRAN.package.sf>)
functions as well as convenience functions in the package can be distributed
over multiple threads. The simplest way of parallelizing generic geospatial
computation is to start from par_pad_*() functions to par_grid(),
par_hierarchy(), or par_multirasters() functions. Virtually any functions
accepting classes in 'terra' or 'sf' packages can be used in the three
parallelization functions. A common raster-vector overlay operation
is provided as a function extract_at(), which uses
'exactextractr' (Baston, 2023 <doi:10.32614/CRAN.package.exactextractr>), with
options for kernel weights for summarizing [...truncated...]
Author: Insang Song [aut, cre] ,
Kyle Messier [aut, ctb] ,
Alec L. Robitaille [rev] ,
Eric R. Scott [rev]
Maintainer: Insang Song <geoissong@gmail.com>
Diff between chopin versions 0.9.4 dated 2025-07-18 and 0.9.9 dated 2025-09-10
DESCRIPTION | 11 - MD5 | 59 +++--- NAMESPACE | 4 NEWS.md | 2 R/check.R | 37 ++- R/gridding.R | 401 ++++++++++++++++++++++++++++++++++------- R/scale_process.R | 41 ++-- R/scale_process_mirai.R | 52 ++--- README.md | 169 +++++++++++++---- inst/doc/v01_start.R | 101 ++++++++++ inst/doc/v01_start.Rmd | 109 +++++++++++ inst/doc/v01_start.html | 285 ++++++++++++++++++++--------- inst/doc/v03_par_pad_grid.R | 36 +++ inst/doc/v03_par_pad_grid.Rmd | 44 ++++ inst/doc/v03_par_pad_grid.html | 364 +++++++++++++++++++++---------------- inst/extdata |only man/par_cut_coords.Rd | 2 man/par_grid.Rd | 2 man/par_grid_mirai.Rd | 4 man/par_hierarchy.Rd | 2 man/par_hierarchy_mirai.Rd | 4 man/par_make_dggrid.Rd |only man/par_make_grid.Rd | 2 man/par_make_h3.Rd |only man/par_merge_grid.Rd | 8 man/par_multirasters.Rd | 2 man/par_multirasters_mirai.Rd | 4 man/par_pad_balanced.Rd | 2 man/par_pad_grid.Rd | 45 +++- man/par_split_list.Rd | 5 vignettes/v01_start.Rmd | 109 +++++++++++ vignettes/v03_par_pad_grid.Rmd | 44 ++++ 32 files changed, 1510 insertions(+), 440 deletions(-)
Title: Nested Data Summary, Adverse Events and REDCap
Description: Tools and code snippets for summarizing nested data, adverse events
and REDCap study information.
Author: Lisa Avery [aut] ,
Zeynep Baskurt [aut],
Osvaldo Espin-Garcia [aut],
Katrina Hueniken [aut],
Katherine Lajkosz [aut] ,
Xuan Li [aut],
Tyler Pittman [cre, aut] ,
Anna Santiago [aut] ,
Jessica Weiss [aut],
Wei Xu [aut]
Maintainer: Tyler Pittman <tyler.pittman@uhn.ca>
Diff between BiostatsUHNplus versions 1.0.2 dated 2025-02-03 and 1.0.3 dated 2025-09-10
DESCRIPTION | 26 + MD5 | 81 +++-- NAMESPACE | 10 NEWS.md | 8 R/ae_timeline_plot.R | 14 - R/caterpillar_plot.R | 19 + R/covsum_nested.R | 21 - R/dsmb_ccru.R | 16 - R/dsmb_ddp.R |only R/globals.R | 2 R/redcap_data_out.R | 140 ++++++++-- R/rm_ae_all_g3p.R |only README.md | 24 - man/ae_timeline_plot.Rd | 4 man/caterpillar_plot.Rd | 4 man/covsum_nested.Rd | 7 man/dsmb_ccru.Rd | 16 - man/dsmb_ddp.Rd |only man/figures/ae_category_attribStart_timeline_plot.png |binary man/figures/ae_category_timeline_plot.png |binary man/figures/ae_detail_timeline_plot.png |binary man/figures/ana10-1.png |binary man/figures/caterpillar_plot_Cows_Model.png |binary man/figures/caterpillar_plot_Yards_Model.png |binary man/figures/caterpillar_plot_ae_category.png |binary man/figures/caterpillar_plot_subject.png |binary man/figures/variance_pie_plot.png |binary man/rm_ae_all_g3p.Rd |only man/tables/EXAMPLE_STUDY_AEs_30OCT2020.xlsx |only man/tables/ae_detail_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY__30OCT2020.xlsx |binary 44 files changed, 261 insertions(+), 131 deletions(-)
More information about BiostatsUHNplus at CRAN
Permanent link
Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre] ,
Jennifer Bryan [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between bigrquery versions 1.6.0 dated 2025-09-03 and 1.6.1 dated 2025-09-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-bq-download.R | 1 + 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Batch Computing with R
Description: Provides Map, Reduce and Filter variants to generate jobs on
batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid
Engine. Multicore and SSH systems are also supported. For further
details see the project web page.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Henrik Bengtsson [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between BatchJobs versions 1.9 dated 2022-03-21 and 1.10 dated 2025-09-10
DESCRIPTION | 35 ++++++++++++++++++--------------- MD5 | 30 ++++++++++++++-------------- NAMESPACE | 1 R/database.R | 1 R/zzz.R | 3 -- inst/CITATION | 4 +-- man/BatchJobs.Rd | 19 +++++++++++++++++ man/makeClusterFunctionsInteractive.Rd | 4 +-- man/makeClusterFunctionsLSF.Rd | 4 +-- man/makeClusterFunctionsLocal.Rd | 4 +-- man/makeClusterFunctionsMulticore.Rd | 4 +-- man/makeClusterFunctionsOpenLava.Rd | 4 +-- man/makeClusterFunctionsSGE.Rd | 4 +-- man/makeClusterFunctionsSLURM.Rd | 4 +-- man/makeClusterFunctionsSSH.Rd | 4 +-- man/makeClusterFunctionsTorque.Rd | 4 +-- 16 files changed, 77 insertions(+), 52 deletions(-)
Title: Hard and Soft Cluster Validity Indices
Description: Algorithms for checking the accuracy of a clustering result with known classes, computing cluster validity indices, and generating plots for comparing them.
The package is compatible with K-means, fuzzy C means, EM clustering, and hierarchical clustering (single, average, and complete linkage).
The details of the indices in this package can be found in:
J. C. Bezdek, M. Moshtaghi, T. Runkler, C. Leckie (2016) <doi:10.1109/TFUZZ.2016.2540063>,
T. Calinski, J. Harabasz (1974) <doi:10.1080/03610927408827101>,
C. H. Chou, M. C. Su, E. Lai (2004) <doi:10.1007/s10044-004-0218-1>,
D. L. Davies, D. W. Bouldin (1979) <doi:10.1109/TPAMI.1979.4766909>,
J. C. Dunn (1973) <doi:10.1080/01969727308546046>,
F. Haouas, Z. Ben Dhiaf, A. Hammouda, B. Solaiman (2017) <doi:10.1109/FUZZ-IEEE.2017.8015651>,
M. Kim, R. S. Ramakrishna (2005) <doi:10.1016/j.patrec.2005.04.007>,
S. H. Kwon (1998) <doi:10.1049/EL:19981523>,
S. H. Kwon, J. Kim, S. H. Son (2021) <d [...truncated...]
Author: Nathakhun Wiroonsri [cre, aut] ,
Onthada Preedasawakul [aut]
Maintainer: Nathakhun Wiroonsri <nathakhun.wir@kmutt.ac.th>
Diff between UniversalCVI versions 1.2.0 dated 2025-01-27 and 1.3.0 dated 2025-09-10
DESCRIPTION | 13 +++++++------ MD5 | 44 ++++++++++++++++++++++---------------------- NEWS.md | 3 +++ R/CH.IDX.R | 5 +++-- R/CSL.IDX.R | 5 +++-- R/DB.IDX.R | 5 +++-- R/DI.IDX.R | 5 +++-- R/Hvalid.R | 5 +++-- R/PB.IDX.R | 5 +++-- R/SF.IDX.R | 5 +++-- R/SH.IDX.R | 6 +++--- R/STRPBM.IDX.R | 5 +++-- R/Wvalid.R | 5 +++-- man/CH.IDX.Rd | 2 +- man/CSL.IDX.Rd | 2 +- man/DB.IDX.Rd | 2 +- man/DI.IDX.Rd | 2 +- man/Hvalid.Rd | 2 +- man/PB.IDX.Rd | 2 +- man/SF.IDX.Rd | 2 +- man/SH.IDX.Rd | 2 +- man/STRPBM.IDX.Rd | 2 +- man/Wvalid.Rd | 2 +- 23 files changed, 72 insertions(+), 59 deletions(-)
Title: Tailor the Exercise Plans and Visualize the Outcome for T2D
Patients
Description: A system for personalized exercise plan recommendations for T2D (Type 2 Diabetes) patients based on the primary outcome of HbA1c (Glycated Hemoglobin). You provide the individual's information, and 'T2DFitTailor' details the exercise plan and predicts the intervention's effectiveness.
Author: Cheng Liu [aut, cre],
Xinyu Hou [aut],
Bingxiang Xu [aut],
Tiemin Liu [aut],
Ru Wang [aut]
Maintainer: Cheng Liu <971264017@qq.com>
This is a re-admission after prior archival of version 3.0.0 dated 2024-04-16
Diff between T2DFitTailor versions 3.0.0 dated 2024-04-16 and 3.0.2 dated 2025-09-10
DESCRIPTION | 8 - MD5 | 10 - R/TailorExercisePlan.R | 278 +++++++++++++++++------------------ R/VisualizeTailoredExercisePlan.R | 9 - man/TailorExercisePlan.Rd | 97 +++++------- man/VisualizeTailoredExercisePlan.Rd | 96 ++++++------ 6 files changed, 248 insertions(+), 250 deletions(-)
Title: Descriptive Statistics
Description: Computation of standardized interquartile range (IQR), Huber-type skipped mean (Hampel (1985), <doi:10.2307/1268758>), robust coefficient of variation (CV) (Arachchige et al. (2019), <doi:10.48550/arXiv.1907.01110>), robust signal to noise ratio (SNR), z-score, standardized mean difference (SMD), as well as functions that support graphical visualization such as boxplots based on quartiles (not hinges), negative logarithms and generalized logarithms for 'ggplot2' (Wickham (2016), ISBN:978-3-319-24277-4).
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKdescr versions 0.8 dated 2022-11-05 and 0.9 dated 2025-09-10
DESCRIPTION | 15 - MD5 | 23 - NAMESPACE | 3 NEWS | 9 R/illustrateBoxplot.R | 22 - R/illustrateQuantile.R | 10 R/transformations.R | 70 +++++ build/partial.rdb |only build/vignette.rds |binary inst/doc/MKdescr.R | 20 - inst/doc/MKdescr.html | 637 +++++++++++++++++++++++++++--------------------- man/0MKdescr-package.Rd | 13 man/glog.Rd | 7 13 files changed, 502 insertions(+), 327 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-3l/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-5l/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.16.0 dated 2025-06-19 and 0.16.1 dated 2025-09-10
DESCRIPTION | 10 +++---- MD5 | 56 +++++++++++++++++++++--------------------- NEWS.md | 9 ++++++ R/data.R | 8 +++--- R/eq5d.R | 10 ++++--- R/eq5d5l.R | 16 +++++++++++- R/eq5dmap.R | 2 - R/sysdata.rda |binary README.md | 11 ++++++-- inst/doc/eq5d.R | 4 +-- inst/doc/eq5d.Rmd | 6 ++-- inst/doc/eq5d.html | 10 +++---- inst/doc/eq5d_nice_dsu.Rmd | 2 - inst/doc/eq5d_nice_dsu.html | 22 ++++++++-------- inst/shiny/server.R | 2 - inst/shiny/ui.R | 2 - man/DSU3L.Rd | 2 - man/DSU5L.Rd | 2 - man/RCWVH.Rd | 2 - man/VT.Rd | 3 +- man/Y3L.Rd | 5 ++- man/eq5d-package.Rd | 2 - man/eq5d.Rd | 3 +- man/eq5dmap.Rd | 2 - man/valuesets.Rd | 5 ++- tests/testthat/test-eq5d5l.R | 8 ++++++ tests/testthat/test-eq5dy3l.R | 7 +++++ vignettes/eq5d.Rmd | 6 ++-- vignettes/eq5d_nice_dsu.Rmd | 2 - 29 files changed, 135 insertions(+), 84 deletions(-)
Title: Covariance Measure Tests for Conditional Independence
Description: Covariance measure tests for conditional independence testing
against conditional covariance and nonlinear conditional mean alternatives.
The package implements versions of the generalised covariance measure test
(Shah and Peters, 2020, <doi:10.1214/19-aos1857>) and projected covariance
measure test (Lundborg et al., 2023, <doi:10.1214/24-AOS2447>). The
tram-GCM test, for censored responses, is implemented including the Cox
model and survival forests (Kook et al., 2024,
<doi:10.1080/01621459.2024.2395588>). Application examples to variable
significance testing and modality selection can be found in Kook and
Lundborg (2024, <doi:10.1093/bib/bbae475>).
Author: Lucas Kook [aut, cre] ,
Anton Rask Lundborg [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between comets versions 0.1-1 dated 2025-01-31 and 0.2-1 dated 2025-09-10
DESCRIPTION | 15 +++--- MD5 | 29 +++++++----- NAMESPACE | 8 +++ R/RcppExports.R |only R/comet.R | 10 ++-- R/gcm.R | 104 +++++++++++++++++-------------------------- R/kgcm.R |only R/pcm.R | 17 ++++--- R/regressions.R | 126 ++++++++++++++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/comet.Rd | 12 ++--- man/gcm.Rd | 2 man/kgcm.Rd |only man/plot.comet.Rd | 5 +- man/regressions.Rd | 23 ++++++--- man/rgcm.Rd | 10 ++++ src |only 17 files changed, 239 insertions(+), 122 deletions(-)
Title: Support for Compiling Examination Tasks using the 'exams'
Package
Description: The main aim is to further facilitate the creation of exercises based on the package 'exams'
by Grün, B., and Zeileis, A. (2009) <doi:10.18637/jss.v029.i10>. Creating effective student exercises
involves challenges such as creating appropriate data sets and ensuring access to intermediate values
for accurate explanation of solutions. The functionality includes the generation of univariate and
bivariate data including simple time series, functions for theoretical distributions and their approximation,
statistical and mathematical calculations for tasks in basic statistics courses as well as general tasks
such as string manipulation, LaTeX/HTML formatting and the editing of XML task files for 'Moodle'.
Author: Sigbert Klinke [aut, cre] ,
Kleio Chrysopoulou Tseva [ctb]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between exams.forge versions 1.0.11 dated 2025-08-21 and 1.0.12 dated 2025-09-10
exams.forge-1.0.11/exams.forge/data/sos1000.rda |only exams.forge-1.0.12/exams.forge/DESCRIPTION | 23 ++--- exams.forge-1.0.12/exams.forge/MD5 | 54 ++++++------ exams.forge-1.0.12/exams.forge/NAMESPACE | 5 + exams.forge-1.0.12/exams.forge/R/cleanFile.R |only exams.forge-1.0.12/exams.forge/R/cor_data.R | 62 +++++++------- exams.forge-1.0.12/exams.forge/R/data.R | 12 +- exams.forge-1.0.12/exams.forge/R/data_n.R | 16 ++- exams.forge-1.0.12/exams.forge/R/getNames.R |only exams.forge-1.0.12/exams.forge/R/sos.R |only exams.forge-1.0.12/exams.forge/R/sumofsquares.R | 12 +- exams.forge-1.0.12/exams.forge/R/sumofsquares1.R | 5 - exams.forge-1.0.12/exams.forge/R/toHTML.R | 43 +++++---- exams.forge-1.0.12/exams.forge/R/zebra.R | 5 - exams.forge-1.0.12/exams.forge/data/distributions.rda |binary exams.forge-1.0.12/exams.forge/data/skalenniveau.rda |binary exams.forge-1.0.12/exams.forge/data/sos100.rda |binary exams.forge-1.0.12/exams.forge/data/sos200.rda |binary exams.forge-1.0.12/exams.forge/data/sos400.rda |binary exams.forge-1.0.12/exams.forge/data/sos800.rda |binary exams.forge-1.0.12/exams.forge/inst/doc/exams.forge.html | 22 ++-- exams.forge-1.0.12/exams.forge/man/cleanFile.Rd |only exams.forge-1.0.12/exams.forge/man/cor_data.Rd | 51 +++++------ exams.forge-1.0.12/exams.forge/man/data_n.Rd | 16 ++- exams.forge-1.0.12/exams.forge/man/exams.forge-package.Rd | 5 + exams.forge-1.0.12/exams.forge/man/getNames.Rd |only exams.forge-1.0.12/exams.forge/man/sos.Rd | 58 +++++++++++-- exams.forge-1.0.12/exams.forge/man/sumofsquares.Rd | 7 - exams.forge-1.0.12/exams.forge/man/sumofsquares1.Rd | 5 - exams.forge-1.0.12/exams.forge/man/toHTML.Rd | 34 ++++--- exams.forge-1.0.12/exams.forge/man/zebra.Rd | 5 - 31 files changed, 264 insertions(+), 176 deletions(-)
Title: Data Sets for Quantitative Risk Management Practice
Description: Various data sets (stocks, stock indices, constituent data, FX,
zero-coupon bond yield curves, volatility, commodities) for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between qrmdata versions 2024-03-04-2 dated 2024-03-04 and 2025-07-24-3 dated 2025-09-10
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- man/commodities.Rd | 2 +- man/crypto.Rd | 2 +- man/default.Rd | 2 +- man/fx.Rd | 2 +- man/interest_rates.Rd | 16 ++++++++-------- man/losses.Rd | 2 +- man/stock_indices.Rd | 2 +- man/stock_indices_constituents.Rd | 2 +- man/stocks.Rd | 2 +- man/volatility.Rd | 2 +- 12 files changed, 31 insertions(+), 31 deletions(-)
Title: Forest Plots for Network Meta-Analysis with Proportion for Paths
and Studies
Description: Provides customized forest plots for network meta-analysis incorporating direct, indirect, and NMA effects. Includes visualizations of evidence contributions through
proportion bars based on the hat matrix and evidence flow decomposition.
Author: Yanqi Zhang [aut, cre]
Maintainer: Yanqi Zhang <zyq1998@iastate.edu>
Diff between NMAforest versions 0.1.1 dated 2025-09-08 and 0.1.2 dated 2025-09-10
DESCRIPTION | 6 ++-- MD5 | 8 ++--- R/NMAforest.R | 33 +++++++++++++---------- README.md | 77 +++++++++++++++++++++++++++---------------------------- man/NMAforest.Rd | 23 ++++++++++------ 5 files changed, 78 insertions(+), 69 deletions(-)
Title: Design-Based Inference in Vector Generalised Linear Models
Description: Provides inference based on the survey package for the wide range of parametric models in the 'VGAM' package.
Author: Thomas Lumley [aut, cre]
Maintainer: Thomas Lumley <t.lumley@auckland.ac.nz>
Diff between svyVGAM versions 1.2 dated 2023-03-30 and 1.2-17 dated 2025-09-10
DESCRIPTION | 12 ++-- MD5 | 14 ++--- R/svgam.R | 4 + README.md | 5 + build/vignette.rds |binary inst/doc/theory.html | 4 - inst/doc/zeroinfl.html | 131 +++++++++++++++++++++++++------------------------ man/svy_vglm.Rd | 12 ++-- 8 files changed, 100 insertions(+), 82 deletions(-)
More information about SurprisalAnalysis at CRAN
Permanent link
Title: Makes 'R' Easier for Everyone
Description: A meta-package that aims to make 'R' easier for everyone,
especially programmers who have a background in 'SAS®' software.
This set of packages brings many useful concepts to 'R', including
data libraries, data dictionaries, formats
and format catalogs, a data step, and a traceable log. The system
also includes a package that replicates several commonly-used 'SAS®' procedures,
like 'PROC FREQ', 'PROC MEANS', and 'PROC REG'.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between sassy versions 1.2.5 dated 2024-05-30 and 1.2.8 dated 2025-09-10
sassy-1.2.5/sassy/tests/testthat/IQ |only sassy-1.2.5/sassy/tests/testthat/OQ |only sassy-1.2.8/sassy/DESCRIPTION | 28 ++++++---- sassy-1.2.8/sassy/MD5 | 66 ++++++++++++------------- sassy-1.2.8/sassy/NEWS.md | 10 +++ sassy-1.2.8/sassy/README.md | 11 ++++ sassy-1.2.8/sassy/build/vignette.rds |binary sassy-1.2.8/sassy/inst/doc/sassy-ae.html | 8 +-- sassy-1.2.8/sassy/inst/doc/sassy-ae2.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-chgbase.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-dm.R | 2 sassy-1.2.8/sassy/inst/doc/sassy-dm.Rmd | 2 sassy-1.2.8/sassy/inst/doc/sassy-dm.html | 6 +- sassy-1.2.8/sassy/inst/doc/sassy-ds.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-faq.Rmd | 22 ++++++++ sassy-1.2.8/sassy/inst/doc/sassy-faq.html | 16 ++++++ sassy-1.2.8/sassy/inst/doc/sassy-figure.html | 8 +-- sassy-1.2.8/sassy/inst/doc/sassy-figureby.html | 8 +-- sassy-1.2.8/sassy/inst/doc/sassy-forest.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-intext.html | 10 +-- sassy-1.2.8/sassy/inst/doc/sassy-listing.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-pfigure.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-plisting.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-profile.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-shift.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy-survival.html | 6 +- sassy-1.2.8/sassy/inst/doc/sassy-training.R |only sassy-1.2.8/sassy/inst/doc/sassy-training.Rmd |only sassy-1.2.8/sassy/inst/doc/sassy-training.html |only sassy-1.2.8/sassy/inst/doc/sassy-vs.html | 4 - sassy-1.2.8/sassy/inst/doc/sassy.html | 32 ++++++------ sassy-1.2.8/sassy/man/sassy.Rd | 6 +- sassy-1.2.8/sassy/vignettes/sassy-dm.Rmd | 2 sassy-1.2.8/sassy/vignettes/sassy-faq.Rmd | 22 ++++++++ sassy-1.2.8/sassy/vignettes/sassy-training.Rmd |only 35 files changed, 196 insertions(+), 109 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++14 [...truncated...]
Author: James Joseph Balamuta [aut, cre, cph] ,
Dirk Eddelbuettel [aut, cph]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.2.22.1.1 dated 2024-12-03 and 0.2.22.1.2 dated 2025-09-10
ChangeLog | 13 +++++++++++++ DESCRIPTION | 19 ++++++++++--------- MD5 | 20 ++++++++++---------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/package-usage.Rmd | 7 +++++-- inst/doc/package-usage.html | 11 +++++++---- inst/doc/using-rcppensmallen.html | 25 +++++++++++++------------ src/Makevars | 2 +- src/Makevars.win | 2 +- vignettes/package-usage.Rmd | 7 +++++-- 11 files changed, 71 insertions(+), 41 deletions(-)
Title: A Procedure for Multicollinearity Testing using Bootstrap
Description: Functions for detecting multicollinearity. This test gives statistical support to two of the most famous methods for detecting multicollinearity in applied work: Klein’s rule and Variance Inflation Factor (VIF). See the URL for the papers associated with this package, as for instance, Morales-Oñate and Morales-Oñate (2015) <doi:10.33333/rp.vol51n2.05>.
Author: Victor Morales-Onate [aut, cre] ,
Bolivar Morales-Onate [aut]
Maintainer: Victor Morales-Onate <vmorales.ppb@gmail.com>
This is a re-admission after prior archival of version 1.0.2 dated 2023-10-06
Diff between MTest versions 1.0.2 dated 2023-10-06 and 1.0.3 dated 2025-09-10
DESCRIPTION | 19 ++++++++++--------- MD5 | 6 +++--- build/partial.rdb |binary man/plot.MTest.Rd | 2 +- 4 files changed, 14 insertions(+), 13 deletions(-)
Title: An Interface to Google Drive
Description: Manage Google Drive files from R.
Author: Lucy D'Agostino McGowan [aut],
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between googledrive versions 2.1.1 dated 2023-06-11 and 2.1.2 dated 2025-09-10
DESCRIPTION | 19 +- MD5 | 233 ++++++++++++++--------------- NEWS.md | 7 R/aaa.R | 24 +- R/compat-vctrs.R | 8 R/deprecated.R | 4 R/dribble.R | 15 + R/drive_about.R | 2 R/drive_auth.R | 49 +++--- R/drive_browse.R | 2 R/drive_cp.R | 14 - R/drive_create.R | 21 +- R/drive_download.R | 12 - R/drive_examples.R | 40 ++-- R/drive_fields.R | 3 R/drive_find.R | 26 +-- R/drive_get.R | 16 + R/drive_get_path.R | 72 +++++--- R/drive_id-class.R | 8 R/drive_ls.R | 16 + R/drive_mime_type.R | 5 R/drive_mkdir.R | 12 - R/drive_mv.R | 16 + R/drive_publish.R | 11 - R/drive_put.R | 16 + R/drive_read.R | 22 +- R/drive_rename.R | 10 - R/drive_reveal.R | 14 - R/drive_rm.R | 6 R/drive_share.R | 30 ++- R/drive_trash.R | 2 R/drive_update.R | 13 - R/drive_upload.R | 28 +-- R/googledrive-package.R | 4 R/promote.R | 2 R/request_generate.R | 16 + R/request_make.R | 32 ++- R/roxygen-templates.R | 24 +- R/shared_drive_find.R | 10 - R/shared_drive_get.R | 6 R/shared_drives.R | 47 +++-- R/shortcut.R | 33 +--- R/sysdata.rda |binary R/team_drive.R | 22 +- R/utils-paths.R | 15 + R/utils-ui.R | 36 ++-- R/utils.R | 24 ++ R/zzz.R | 1 README.md | 22 +- build/vignette.rds |binary inst/WORDLIST | 6 inst/extdata/data/files_fields.csv | 103 ++++++------ inst/extdata/data/mime_tbl.csv | 33 ++-- inst/extdata/data/translate_mime_types.csv | 6 inst/extdata/example_files/markdown.md |only man/as_dribble.Rd | 4 man/dribble-checks.Rd | 2 man/drive_about.Rd | 4 man/drive_auth.Rd | 4 man/drive_browse.Rd | 4 man/drive_cp.Rd | 2 man/drive_create.Rd | 2 man/drive_deauth.Rd | 4 man/drive_download.Rd | 2 man/drive_examples.Rd | 6 man/drive_get.Rd | 4 man/drive_id.Rd | 2 man/drive_link.Rd | 2 man/drive_mkdir.Rd | 2 man/drive_mv.Rd | 4 man/drive_publish.Rd | 4 man/drive_put.Rd | 4 man/drive_read_string.Rd | 14 - man/drive_rename.Rd | 2 man/drive_reveal.Rd | 4 man/drive_rm.Rd | 8 man/drive_scopes.Rd | 2 man/drive_share.Rd | 10 - man/drive_token.Rd | 2 man/drive_trash.Rd | 4 man/drive_update.Rd | 10 - man/drive_upload.Rd | 14 - man/drive_user.Rd | 2 man/googledrive-configuration.Rd | 2 man/googledrive-package.Rd | 4 man/request_generate.Rd | 2 man/request_make.Rd | 4 man/shortcut_create.Rd | 8 man/shortcut_resolve.Rd | 8 tests/spelling.R | 3 tests/testthat/_snaps/drive_download.md | 10 + tests/testthat/_snaps/drive_upload.md | 12 + tests/testthat/_snaps/utils-paths.md | 2 tests/testthat/driver.R | 8 tests/testthat/helper.R | 8 tests/testthat/test-compat-dplyr.R | 4 tests/testthat/test-deprecated.R | 5 tests/testthat/test-dribble.R | 16 + tests/testthat/test-drive_auth.R | 15 + tests/testthat/test-drive_browse.R | 2 tests/testthat/test-drive_cp.R | 12 - tests/testthat/test-drive_download.R | 71 +++++++- tests/testthat/test-drive_endpoints.R | 5 tests/testthat/test-drive_get.R | 4 tests/testthat/test-drive_get_path.R | 46 ++--- tests/testthat/test-drive_id-class.R | 20 +- tests/testthat/test-drive_ls.R | 21 +- tests/testthat/test-drive_mime_type.R | 10 - tests/testthat/test-drive_mv.R | 31 ++- tests/testthat/test-drive_put.R | 10 - tests/testthat/test-drive_read.R | 6 tests/testthat/test-drive_update.R | 2 tests/testthat/test-drive_upload.R | 41 ++++- tests/testthat/test-promote.R | 6 tests/testthat/test-request_generate.R | 3 tests/testthat/test-shared_drives.R | 5 tests/testthat/test-shortcut.R | 4 tests/testthat/test-utils-paths.R | 30 +-- 118 files changed, 1060 insertions(+), 726 deletions(-)
Title: Create Maps from a Column of Place Names
Description: Mapping tools that convert place names to coordinates on the fly.
These 'ggplot2' extensions make maps from a data frame where one of the
columns contains place names, without having to directly work with the
underlying geospatial data and tools. The corresponding map data must be
registered with 'cartographer' either by the user or by another package.
Author: Carl Suster [aut, cre] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <carl.suster@sydney.edu.au>
Diff between ggautomap versions 0.3.2 dated 2023-05-24 and 0.3.3 dated 2025-09-10
DESCRIPTION | 19 - LICENSE | 4 MD5 | 36 +-- NEWS.md | 4 R/geom_centroids.R | 2 R/stat_automap.R | 2 R/stat_automap_coords.R | 4 README.md | 42 +++ build/vignette.rds |binary inst/doc/ggautomap.R | 24 ++ inst/doc/ggautomap.Rmd | 48 ++++ inst/doc/ggautomap.html | 356 ++++++++++++++++++--------------- man/figures/README-example-basic-1.png |binary man/figures/README-example-basic-2.png |binary man/geom_centroids.Rd | 8 man/reexports.Rd | 2 man/stat_automap.Rd | 2 man/stat_automap_coords.Rd | 10 vignettes/ggautomap.Rmd | 48 ++++ 19 files changed, 400 insertions(+), 211 deletions(-)
Title: A Procedure for Cluster Evolution Analytics
Description: Cluster Evolution Analytics allows us to use exploratory what if questions in the sense that the present information of an object is plugged-in a dataset in a previous time frame so that we can explore its evolution (and of its neighbors) to the present. See the URL for the papers associated with this package, as for instance, Morales-Oñate and Morales-Oñate (2024) <doi:10.1016/j.softx.2024.101921>.
Author: Victor Morales-Onate [aut, cre] ,
Bolivar Morales-Onate [aut]
Maintainer: Victor Morales-Onate <vmorales.ppb@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2024-02-26
Diff between clusEvol versions 1.0.0 dated 2024-02-26 and 1.0.1 dated 2025-09-10
DESCRIPTION | 21 +++++++++++---------- MD5 | 15 ++++++++------- build |only data/actpas.RData |binary data/pwt1001.RData |binary man/actpas.Rd | 2 +- man/clusEvol.Rd | 4 ++-- man/plot.clusEvol.Rd | 2 +- man/pwt1001.Rd | 2 +- 9 files changed, 24 insertions(+), 22 deletions(-)
Title: Create Satisficing 'Excel', 'HTML', 'LaTeX', and 'RTF' Tables
using a Simple Formula
Description: Create "good enough" tables with a single formula. 'tablespan' tables
can be exported to 'Excel', 'HTML', 'LaTeX', and 'RTF' by leveraging
the packages 'openxlsx' and 'gt'. See <https://jhorzek.github.io/tablespan/> for
an introduction.
Author: Jannik H. Orzek [aut, cre, cph]
Maintainer: Jannik H. Orzek <jannik.orzek@mailbox.org>
Diff between tablespan versions 0.2.1 dated 2025-01-28 and 0.3.2 dated 2025-09-10
tablespan-0.2.1/tablespan/R/tab_styles.R |only tablespan-0.2.1/tablespan/man/cell_style.Rd |only tablespan-0.2.1/tablespan/man/create_data_styles.Rd |only tablespan-0.2.1/tablespan/man/style_color.Rd |only tablespan-0.2.1/tablespan/man/tbl_styles.Rd |only tablespan-0.2.1/tablespan/tests/testthat/xlsx_files/cars_893485.xlsx |only tablespan-0.2.1/tablespan/tests/testthat/xlsx_files/cars_987349.xlsx |only tablespan-0.3.2/tablespan/DESCRIPTION | 14 tablespan-0.3.2/tablespan/MD5 | 81 tablespan-0.3.2/tablespan/NAMESPACE | 16 tablespan-0.3.2/tablespan/R/as_excel.R | 870 +++--- tablespan-0.3.2/tablespan/R/as_gt.R | 236 + tablespan-0.3.2/tablespan/R/color_scales.R |only tablespan-0.3.2/tablespan/R/deparse_formula.R | 121 tablespan-0.3.2/tablespan/R/formats.R |only tablespan-0.3.2/tablespan/R/get_locations.R | 31 tablespan-0.3.2/tablespan/R/print_basic_table.R | 140 tablespan-0.3.2/tablespan/R/styles.R |only tablespan-0.3.2/tablespan/R/tablespan.R | 137 tablespan-0.3.2/tablespan/README.md | 297 +- tablespan-0.3.2/tablespan/man/as_excel.Rd | 20 tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars.png |binary tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars_column.png |only tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars_costum.png |only tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars_footnote.png |only tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars_header.png |only tablespan-0.3.2/tablespan/man/figures/tablespan_example_gt_cars_title.png |only tablespan-0.3.2/tablespan/man/figures/tablespan_example_styling.png |only tablespan-0.3.2/tablespan/man/format_column.Rd |only tablespan-0.3.2/tablespan/man/style_column.Rd |only tablespan-0.3.2/tablespan/man/style_footnote.Rd |only tablespan-0.3.2/tablespan/man/style_header.Rd |only tablespan-0.3.2/tablespan/man/style_header_cells.Rd |only tablespan-0.3.2/tablespan/man/style_hline.Rd |only tablespan-0.3.2/tablespan/man/style_subtitle.Rd |only tablespan-0.3.2/tablespan/man/style_title.Rd |only tablespan-0.3.2/tablespan/man/style_vline.Rd |only tablespan-0.3.2/tablespan/man/tablespan.Rd | 5 tablespan-0.3.2/tablespan/tests/testthat/test-excel-cars.R | 1069 +++++-- tablespan-0.3.2/tablespan/tests/testthat/test-gt-cars.R | 1445 ++++++++-- tablespan-0.3.2/tablespan/tests/testthat/test-print_table.R | 15 tablespan-0.3.2/tablespan/tests/testthat/test-single-row-df.R |only tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_additional_spanners.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_additional_spanners_left_right.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_cell_styles.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_complex_merge.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_data_formatting.xlsx |only tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_data_gradient_2.xlsx |only tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_data_gradient_3.xlsx |only tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_data_styles.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_missing_rownames.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_no_row_names.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_no_titles.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_no_titles_no_footnote.xlsx |binary tablespan-0.3.2/tablespan/tests/testthat/xlsx_files/cars_offset.xlsx |binary 56 files changed, 3137 insertions(+), 1360 deletions(-)
Title: Superfast Likelihood Inference for Stationary Gaussian Time
Series
Description: Likelihood evaluations for stationary Gaussian time series are typically obtained via the Durbin-Levinson algorithm, which scales as O(n^2) in the number of time series observations. This package provides a "superfast" O(n log^2 n) algorithm written in C++, crossing over with Durbin-Levinson around n = 300. Efficient implementations of the score and Hessian functions are also provided, leading to superfast versions of inference algorithms such as Newton-Raphson and Hamiltonian Monte Carlo. The C++ code provides a Toeplitz matrix class packaged as a header-only library, to simplify low-level usage in other packages and outside of R.
Author: Yun Ling [aut],
Martin Lysy [aut, cre]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between SuperGauss versions 2.0.3 dated 2022-02-24 and 2.0.4 dated 2025-09-10
SuperGauss-2.0.3/SuperGauss/src/Makevars.win |only SuperGauss-2.0.4/SuperGauss/DESCRIPTION | 12 SuperGauss-2.0.4/SuperGauss/MD5 | 60 SuperGauss-2.0.4/SuperGauss/NEWS.md | 16 SuperGauss-2.0.4/SuperGauss/build/vignette.rds |binary SuperGauss-2.0.4/SuperGauss/cleanup | 2 SuperGauss-2.0.4/SuperGauss/inst/doc/SuperGauss-quicktut.R | 2 SuperGauss-2.0.4/SuperGauss/inst/doc/SuperGauss-quicktut.html | 741 +++++----- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/Circulant.h | 157 +- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/DurbinLevinson.h | 160 +- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/EvenFFT.h | 59 SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/GSchur.h | 258 ++- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/NormalCirculant.h | 153 +- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/NormalToeplitz.h | 240 +-- SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/PCG.h | 67 SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/RandomHSS.h |only SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/RealFFT.h | 34 SuperGauss-2.0.4/SuperGauss/inst/include/SuperGauss/Toeplitz.h | 352 ++-- SuperGauss-2.0.4/SuperGauss/man/Circulant.Rd | 66 SuperGauss-2.0.4/SuperGauss/man/NormalCirculant.Rd | 42 SuperGauss-2.0.4/SuperGauss/man/NormalToeplitz.Rd | 48 SuperGauss-2.0.4/SuperGauss/man/SuperGauss-package.Rd | 8 SuperGauss-2.0.4/SuperGauss/man/Toeplitz.Rd | 84 - SuperGauss-2.0.4/SuperGauss/man/fbm_msd.Rd | 6 SuperGauss-2.0.4/SuperGauss/src/CirculantExports.cpp | 52 SuperGauss-2.0.4/SuperGauss/src/DurbinLevinsonExports.cpp | 21 SuperGauss-2.0.4/SuperGauss/src/FFTExports.cpp | 37 SuperGauss-2.0.4/SuperGauss/src/NormalCirculantExports.cpp | 37 SuperGauss-2.0.4/SuperGauss/src/NormalToeplitzExports.cpp | 102 - SuperGauss-2.0.4/SuperGauss/src/PCGExports.cpp | 16 SuperGauss-2.0.4/SuperGauss/src/ToeplitzExports.cpp | 49 SuperGauss-2.0.4/SuperGauss/tests/testthat/SuperGauss-testfunctions.R | 9 32 files changed, 1621 insertions(+), 1269 deletions(-)
Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between qrmtools versions 0.0-17 dated 2024-03-04 and 0.0-18 dated 2025-09-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- build/vignette.rds |binary inst/doc/ARMA_GARCH_VaR.html | 12 ++++++------ inst/doc/VaR_bounds.html | 8 ++++---- inst/doc/geometric_risk_measures.html | 4 ++-- man/fit_ARMA_GARCH.Rd | 2 +- man/get_data.Rd | 23 +++++++++++++---------- man/matrix_plot.Rd | 10 +++++----- man/returns.Rd | 8 ++++---- man/tests.Rd | 7 ++++--- 11 files changed, 52 insertions(+), 48 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' <https://poppler.freedesktop.org> for extracting
text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering
of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further
processing in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between pdftools versions 3.5.0 dated 2025-03-03 and 3.6.0 dated 2025-09-10
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/RcppExports.R | 4 ++-- R/tools.R | 5 +++-- man/pdftools.Rd | 4 +++- src/RcppExports.cpp | 9 +++++---- src/bindings.cpp | 4 ++-- tests/testthat/test-reading.R | 1 + 9 files changed, 33 insertions(+), 24 deletions(-)
Title: Partial Orders in Socio-Economics
Description: Implements tools for the analysis of partially ordered data, with a particular focus on the evaluation of multidimensional systems of indicators and on the analysis of poverty. References, Fattore M. (2016) <doi:10.1007/s11205-015-1059-6> Fattore M., Arcagni A. (2016) <doi:10.1007/s11205-016-1501-4> Arcagni A. (2017) <doi:10.1007/978-3-319-45421-4_19>.
Author: Alberto Arcagni [aut, cre],
Marco Fattore [aut]
Maintainer: Alberto Arcagni <alberto.arcagni@uniroma1.it>
Diff between parsec versions 1.2.7 dated 2023-08-19 and 1.2.9 dated 2025-09-10
DESCRIPTION | 19 +++++++++++++------ MD5 | 6 +++--- man/parsec2igraph.Rd | 7 +++---- man/summary.parsec.Rd | 16 ++++++++-------- 4 files changed, 27 insertions(+), 21 deletions(-)
Title: Multivariate Normal Variance Mixtures
Description: Functions for working with (grouped) multivariate normal variance mixture
distributions (evaluation of distribution functions and densities,
random number generation and parameter estimation), including
Student's t distribution for non-integer degrees-of-freedom as well as the grouped t
distribution and copula with multiple degrees-of-freedom parameters.
See <doi:10.18637/jss.v102.i02> for a high-level description of select functionality.
Author: Marius Hofert [aut, cre],
Erik Hintz [aut],
Christiane Lemieux [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between nvmix versions 0.1-1 dated 2024-03-04 and 0.1-2 dated 2025-09-10
DESCRIPTION | 10 ++++++---- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/nvmix_functionality.html | 4 ++-- inst/doc/nvmix_riskmeasures.html | 4 ++-- man/qqplot_maha.Rd | 6 +++--- 7 files changed, 19 insertions(+), 17 deletions(-)
Title: Graph Prediction from a Graph Time Series
Description: Predicting the structure of a graph including new nodes and edges using
a time series of graphs. Flux balance analysis, a linear and integer programming
technique used in biochemistry is used with time series prediction methods to
predict the graph structure at a future time point
Kandanaarachchi (2025) <doi:10.48550/arXiv.2507.05806>.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Stefan Westerlund [aut]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between netseer versions 0.1.1 dated 2024-11-12 and 0.1.2 dated 2025-09-10
DESCRIPTION | 22 +++-- MD5 | 23 ++++- R/functions.R | 17 +++- R/network_prediction.R | 5 - README.md | 205 ++++++++----------------------------------------- build |only inst |only man/predict_graph.Rd | 5 - vignettes |only 9 files changed, 85 insertions(+), 192 deletions(-)
Title: Hierarchically Regularized Entropy Balancing
Description: Implements hierarchically regularized entropy balancing proposed by Xu and Yang (2022) <doi:10.1017/pan.2022.12>. The method adjusts the covariate distributions of the control group to match those of the treatment group. 'hbal' automatically expands the covariate space to include higher order terms and uses cross-validation to select variable penalties for the balancing conditions.
Author: Yiqing Xu [aut, cre] ,
Eddie Yang [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between hbal versions 1.2.12 dated 2024-01-10 and 1.2.15 dated 2025-09-10
DESCRIPTION | 11 ++++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 2 ++ R/att.R | 45 +++++++++++++++++++++++++++++++++++++++++---- R/hbal.R | 15 +++++++++++---- man/att.Rd | 6 ++++-- man/covarExclude.Rd | 1 - man/covarExpand.Rd | 1 - man/crossValidate.Rd | 2 +- man/dot-onAttach.Rd | 1 - man/doubleSelection.Rd | 1 - man/hbal-data.Rd | 1 - man/hbal.Rd | 2 +- man/updateCoef.Rd | 1 - src/eigen.cpp | 4 +++- 15 files changed, 83 insertions(+), 38 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi:10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-alleli [...truncated...]
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.7.8 dated 2024-04-06 and 1.7.9 dated 2025-09-10
DESCRIPTION | 10 - MD5 | 30 +++-- NAMESPACE | 4 R/HWBalance.R |only R/HWChisq.R | 155 +++++++++++++++++------------- R/HWClr.R | 3 build/partial.rdb |binary build/vignette.rds |binary data/ABO1KG.rda |only inst/doc/HardyWeinberg.Rnw | 4 inst/doc/HardyWeinberg.pdf |binary inst/doc/HardyWeinbergExampleSession.html | 18 ++- man/ABO1KG.Rd |only man/HWBalance.Rd |only man/HWChisq.Rd | 2 man/HWPerm.Rd | 2 man/HardyWeinberg-package.Rd | 4 vignettes/HardyWeinberg.Rnw | 4 18 files changed, 134 insertions(+), 102 deletions(-)
Title: Generative Neural Networks
Description: Tools to set up, train, store, load, investigate and analyze
generative neural networks. In particular, functionality for
generative moment matching networks is provided.
Author: Marius Hofert [aut, cre] ,
Avinash Prasad [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between gnn versions 0.0-4 dated 2024-02-28 and 0.0-5 dated 2025-09-10
DESCRIPTION | 11 ++++++----- MD5 | 22 +++++++++++----------- R/FNN.R | 15 ++++++++------- R/ffGNN.R | 7 ++++--- R/fitGNN.R | 8 ++++---- R/loss.R | 33 +++++++++++++++++++-------------- R/plot.R | 1 + R/rPrior.R | 2 +- build/partial.rdb |binary man/FNN.Rd | 2 +- man/ffGNN.Rd | 5 +++-- man/rPrior.Rd | 2 +- 12 files changed, 59 insertions(+), 49 deletions(-)
Title: Geometries to Plot Networks with 'ggplot2'
Description: Geometries to plot network objects with 'ggplot2'.
Author: Francois Briatte [aut, cre] ,
Michal Bojanowski [ctb] ,
Mickael Canouil [ctb] ,
Zachary Charlop-Powers [ctb] ,
Jacob C. Fisher [ctb] ,
Kipp Johnson [ctb] ,
Tyler Rinker [ctb]
Maintainer: Francois Briatte <f.briatte@gmail.com>
Diff between ggnetwork versions 0.5.13 dated 2024-02-14 and 0.5.14 dated 2025-09-10
DESCRIPTION | 25 +++++---- MD5 | 38 +++++++------- NAMESPACE | 3 + NEWS.md | 8 +++ R/fortify-igraph.R | 19 +++---- R/geom-edges.R | 9 +-- R/utilities.R | 10 +++ build/vignette.rds |binary inst/doc/ggnetwork.R | 26 +++++----- inst/doc/ggnetwork.html | 88 +++++++++++++++++----------------- man/fortify.igraph.Rd | 2 man/geom_edges.Rd | 47 +++++++++++++++--- man/geom_edgetext.Rd | 50 +++++++++++++++---- man/geom_edgetext_repel.Rd | 5 + man/geom_nodes.Rd | 47 +++++++++++++++--- man/geom_nodetext.Rd | 46 +++++++++++++++-- man/theme_blank.Rd | 2 man/theme_facet.Rd | 2 tests/testthat/test-fortify-igraph.R | 3 - tests/testthat/test-fortify-network.R | 3 - 20 files changed, 292 insertions(+), 141 deletions(-)
Title: Interactive Forest Plot
Description: Interactive forest plot for clinical trial safety analysis
using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM)
datasets. Includes functionality for adverse event filtering,
incidence-based group filtering, hover-over reveals, and search and sort
operations. The workflow allows for metadata construction, data preparation,
output formatting, and interactive plot generation.
Author: Yilong Zhang [aut],
Benjamin Wang [aut, cre],
Yujie Zhao [aut],
Nan Xiao [ctb],
Hiroaki Fukuda [aut],
Yulia Sidi [ctb],
Xuan Deng [ctb],
Jeetener Chauhan [ctb],
Li Ma [ctb],
Chen Wang [ctb],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Benjamin Wang <benjamin.wang@merck.com>
Diff between forestly versions 0.1.2 dated 2025-01-10 and 0.1.3 dated 2025-09-10
forestly-0.1.2/forestly/inst/doc/forestly-cran.R |only forestly-0.1.2/forestly/inst/doc/forestly-cran.Rmd |only forestly-0.1.2/forestly/inst/doc/forestly-cran.html |only forestly-0.1.2/forestly/vignettes/forestly-cran.Rmd |only forestly-0.1.3/forestly/DESCRIPTION | 16 forestly-0.1.3/forestly/MD5 | 75 ++- forestly-0.1.3/forestly/NAMESPACE | 1 forestly-0.1.3/forestly/NEWS.md | 22 forestly-0.1.3/forestly/R/ae_forestly.R | 75 ++- forestly-0.1.3/forestly/R/ae_listing.R | 241 ++++++---- forestly-0.1.3/forestly/R/format_ae_forestly.R | 80 ++- forestly-0.1.3/forestly/R/plot.R | 38 + forestly-0.1.3/forestly/R/prepare_ae_forestly.R | 36 - forestly-0.1.3/forestly/R/reactable2.R | 22 forestly-0.1.3/forestly/R/rtf_static_forestly.R |only forestly-0.1.3/forestly/build/vignette.rds |binary forestly-0.1.3/forestly/inst/doc/customize-ae-specific-columns.R |only forestly-0.1.3/forestly/inst/doc/customize-ae-specific-columns.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-ae-specific-columns.html |only forestly-0.1.3/forestly/inst/doc/customize-color.R |only forestly-0.1.3/forestly/inst/doc/customize-color.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-color.html |only forestly-0.1.3/forestly/inst/doc/customize-diff-label.R |only forestly-0.1.3/forestly/inst/doc/customize-diff-label.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-diff-label.html |only forestly-0.1.3/forestly/inst/doc/customize-digits.R |only forestly-0.1.3/forestly/inst/doc/customize-digits.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-digits.html |only forestly-0.1.3/forestly/inst/doc/customize-listing-columns.R |only forestly-0.1.3/forestly/inst/doc/customize-listing-columns.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-listing-columns.html |only forestly-0.1.3/forestly/inst/doc/customize-width.R |only forestly-0.1.3/forestly/inst/doc/customize-width.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-width.html |only forestly-0.1.3/forestly/inst/doc/customize-xlimit.R |only forestly-0.1.3/forestly/inst/doc/customize-xlimit.Rmd |only forestly-0.1.3/forestly/inst/doc/customize-xlimit.html |only forestly-0.1.3/forestly/inst/doc/forest-plot-static.Rmd | 4 forestly-0.1.3/forestly/inst/doc/forest-plot-static.html | 16 forestly-0.1.3/forestly/man/ae_forestly.Rd | 5 forestly-0.1.3/forestly/man/format_ae_forestly.Rd | 24 forestly-0.1.3/forestly/man/plot_dot.Rd | 6 forestly-0.1.3/forestly/man/plot_errorbar.Rd | 5 forestly-0.1.3/forestly/man/prepare_ae_forestly.Rd | 4 forestly-0.1.3/forestly/man/rtf_static_forestly.Rd |only forestly-0.1.3/forestly/man/table_panel.Rd | 7 forestly-0.1.3/forestly/tests/testthat/test-ae_listing.R |only forestly-0.1.3/forestly/tests/testthat/test-format_ae_forestly.R | 23 forestly-0.1.3/forestly/vignettes/customize-ae-specific-columns.Rmd |only forestly-0.1.3/forestly/vignettes/customize-color.Rmd |only forestly-0.1.3/forestly/vignettes/customize-diff-label.Rmd |only forestly-0.1.3/forestly/vignettes/customize-digits.Rmd |only forestly-0.1.3/forestly/vignettes/customize-listing-columns.Rmd |only forestly-0.1.3/forestly/vignettes/customize-width.Rmd |only forestly-0.1.3/forestly/vignettes/customize-xlimit.Rmd |only forestly-0.1.3/forestly/vignettes/forest-plot-static.Rmd | 4 56 files changed, 503 insertions(+), 201 deletions(-)
Title: Access Elevation Data from Various APIs
Description: Several web services are available that provide access to elevation
data. This package provides access to many of those services and
returns elevation data either as an 'sf' simple features object
from point elevation services or as a 'raster' object from raster
elevation services. In future versions, 'elevatr' will drop
support for 'raster' and will instead return 'terra' objects.
Currently, the package supports access to the Amazon Web Services
Terrain Tiles <https://registry.opendata.aws/terrain-tiles/>,
the Open Topography Global Datasets
API <https://opentopography.org/developers/>, and the USGS
Elevation Point Query Service <https://apps.nationalmap.gov/epqs/>.
Author: Jeffrey Hollister [aut, cre] ,
Tarak Shah [ctb],
Jakub Nowosad [ctb] ,
Alec L. Robitaille [ctb] ,
Marcus W. Beck [rev] ,
Mike Johnson [ctb]
Maintainer: Jeffrey Hollister <hollister.jeff@epa.gov>
Diff between elevatr versions 0.99.0 dated 2023-09-12 and 0.99.1 dated 2025-09-10
DESCRIPTION | 24 MD5 | 34 R/get_elev_point.R | 24 R/get_elev_raster.R | 68 - README.md | 11 build/vignette.rds |binary inst/CITATION | 8 inst/doc/introduction_to_elevatr.R | 8 inst/doc/introduction_to_elevatr.Rmd | 8 inst/doc/introduction_to_elevatr.html | 1895 +++++----------------------------- man/get_aws_points.Rd | 4 man/get_aws_terrain.Rd | 13 man/get_elev_point.Rd | 6 man/get_elev_raster.Rd | 14 man/get_epqs.Rd | 2 man/get_opentopo.Rd | 9 man/merge_rasters.Rd | 8 vignettes/introduction_to_elevatr.Rmd | 8 18 files changed, 490 insertions(+), 1654 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with
remote database tables as if they are in-memory data frames. Basic
features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between dbplyr versions 2.5.0 dated 2024-03-19 and 2.5.1 dated 2025-09-10
dbplyr-2.5.0/dbplyr/build/dbplyr.pdf |only dbplyr-2.5.1/dbplyr/DESCRIPTION | 10 dbplyr-2.5.1/dbplyr/MD5 | 188 +++++----- dbplyr-2.5.1/dbplyr/NEWS.md | 24 + dbplyr-2.5.1/dbplyr/R/backend-.R | 2 dbplyr-2.5.1/dbplyr/R/backend-hive.R | 1 dbplyr-2.5.1/dbplyr/R/backend-mssql.R | 41 +- dbplyr-2.5.1/dbplyr/R/backend-oracle.R | 2 dbplyr-2.5.1/dbplyr/R/backend-postgres.R | 30 + dbplyr-2.5.1/dbplyr/R/backend-redshift.R | 20 - dbplyr-2.5.1/dbplyr/R/backend-snowflake.R | 30 + dbplyr-2.5.1/dbplyr/R/backend-spark-sql.R | 38 -- dbplyr-2.5.1/dbplyr/R/backend-teradata.R | 12 dbplyr-2.5.1/dbplyr/R/remote.R | 12 dbplyr-2.5.1/dbplyr/R/src_dbi.R | 2 dbplyr-2.5.1/dbplyr/R/translate-sql-helpers.R | 5 dbplyr-2.5.1/dbplyr/R/utils-check.R | 2 dbplyr-2.5.1/dbplyr/R/utils.R | 1 dbplyr-2.5.1/dbplyr/R/verb-count.R | 2 dbplyr-2.5.1/dbplyr/R/verb-summarise.R | 3 dbplyr-2.5.1/dbplyr/README.md | 4 dbplyr-2.5.1/dbplyr/build/stage23.rdb |binary dbplyr-2.5.1/dbplyr/build/vignette.rds |binary dbplyr-2.5.1/dbplyr/inst/doc/backend-2.html | 3 dbplyr-2.5.1/dbplyr/inst/doc/dbplyr.R | 14 dbplyr-2.5.1/dbplyr/inst/doc/dbplyr.html | 13 dbplyr-2.5.1/dbplyr/inst/doc/new-backend.html | 5 dbplyr-2.5.1/dbplyr/inst/doc/reprex.html | 11 dbplyr-2.5.1/dbplyr/inst/doc/sql.html | 19 - dbplyr-2.5.1/dbplyr/inst/doc/translation-function.R | 12 dbplyr-2.5.1/dbplyr/inst/doc/translation-function.Rmd | 32 - dbplyr-2.5.1/dbplyr/inst/doc/translation-function.html | 61 +-- dbplyr-2.5.1/dbplyr/inst/doc/translation-verb.html | 3 dbplyr-2.5.1/dbplyr/man/arrange.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/backend-hana.Rd | 2 dbplyr-2.5.1/dbplyr/man/backend-mssql.Rd | 2 dbplyr-2.5.1/dbplyr/man/backend-oracle.Rd | 2 dbplyr-2.5.1/dbplyr/man/collapse.tbl_sql.Rd | 4 dbplyr-2.5.1/dbplyr/man/complete.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/copy_inline.Rd | 4 dbplyr-2.5.1/dbplyr/man/copy_to.src_sql.Rd | 4 dbplyr-2.5.1/dbplyr/man/count.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/db-sql.Rd | 2 dbplyr-2.5.1/dbplyr/man/dbplyr-slice.Rd | 4 dbplyr-2.5.1/dbplyr/man/distinct.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/expand.tbl_lazy.Rd | 6 dbplyr-2.5.1/dbplyr/man/fill.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/filter.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/get_returned_rows.Rd | 8 dbplyr-2.5.1/dbplyr/man/group_by.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/head.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/join.tbl_sql.Rd | 6 dbplyr-2.5.1/dbplyr/man/memdb_frame.Rd | 10 dbplyr-2.5.1/dbplyr/man/mutate.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/nycflights13.Rd | 2 dbplyr-2.5.1/dbplyr/man/pivot_longer.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/pivot_wider.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/pull.tbl_sql.Rd | 2 dbplyr-2.5.1/dbplyr/man/remote_name.Rd | 12 dbplyr-2.5.1/dbplyr/man/replace_na.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/rows-db.Rd | 8 dbplyr-2.5.1/dbplyr/man/select.tbl_lazy.Rd | 2 dbplyr-2.5.1/dbplyr/man/summarise.tbl_lazy.Rd | 4 dbplyr-2.5.1/dbplyr/man/tbl.src_dbi.Rd | 10 dbplyr-2.5.1/dbplyr/man/win_over.Rd | 2 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-.md | 8 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-access.md | 9 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-mssql.md | 61 ++- dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-oracle.md | 16 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-postgres.md | 67 +++ dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-redshift.md | 35 + dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-snowflake.md | 9 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-spark-sql.md |only dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/backend-sqlite.md | 19 - dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/pillar.md | 4 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/rows.md | 2 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/tbl-sql.md | 8 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/translate-sql-conditional.md | 6 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/translate-sql-helpers.md | 8 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/verb-pivot-wider.md | 2 dbplyr-2.5.1/dbplyr/tests/testthat/_snaps/verb-summarise.md | 10 dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-.R | 2 dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-access.R | 17 dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-mssql.R | 56 ++ dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-oracle.R | 15 dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-postgres.R | 62 ++- dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-redshift.R | 37 + dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-snowflake.R | 36 + dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-spark-sql.R | 27 + dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-sqlite.R | 13 dbplyr-2.5.1/dbplyr/tests/testthat/test-backend-teradata.R | 5 dbplyr-2.5.1/dbplyr/tests/testthat/test-pillar.R | 4 dbplyr-2.5.1/dbplyr/tests/testthat/test-tbl-sql.R | 2 dbplyr-2.5.1/dbplyr/tests/testthat/test-translate-sql-helpers.R | 4 dbplyr-2.5.1/dbplyr/tests/testthat/test-verb-summarise.R | 13 dbplyr-2.5.1/dbplyr/vignettes/translation-function.Rmd | 32 - 96 files changed, 867 insertions(+), 458 deletions(-)
Title: Capushe, Data-Driven Slope Estimation and Dimension Jump
Description: Calibration of penalized criteria for model selection. The calibration methods available in this package are based on the slope heuristics.
Author: Vincent Brault [cre, aut] ,
Sylvain Arlot [ctb],
Jean-Patrick Baudry [ctb],
Cathy Maugis [ctb],
Bertrand Michel [ctb]
Maintainer: Vincent Brault <vincent.brault@univ-grenoble-alpes.fr>
Diff between capushe versions 1.1.2 dated 2023-11-27 and 1.1.3 dated 2025-09-10
capushe-1.1.2/capushe/man/BICAICcapushe.Rd |only capushe-1.1.3/capushe/DESCRIPTION | 37 - capushe-1.1.3/capushe/MD5 | 44 - capushe-1.1.3/capushe/NAMESPACE | 40 - capushe-1.1.3/capushe/R/DDSE.R | 796 ++++++++++++---------- capushe-1.1.3/capushe/R/Djump.R | 712 +++++++++++-------- capushe-1.1.3/capushe/R/capushe-package.R |only capushe-1.1.3/capushe/R/capushe.R | 447 ++++++++---- capushe-1.1.3/capushe/R/data.R |only capushe-1.1.3/capushe/R/prog.R | 316 ++++++-- capushe-1.1.3/capushe/data/datacapushe.rda |binary capushe-1.1.3/capushe/data/datapartialcapushe.rda |binary capushe-1.1.3/capushe/data/datavalidcapushe.rda |binary capushe-1.1.3/capushe/man/AICcapushe.Rd |only capushe-1.1.3/capushe/man/BICcapushe.Rd |only capushe-1.1.3/capushe/man/Capushe-class.Rd |only capushe-1.1.3/capushe/man/DDSE.Rd | 216 ++--- capushe-1.1.3/capushe/man/Djump.Rd | 276 ++++--- capushe-1.1.3/capushe/man/capushe-package.Rd | 133 +-- capushe-1.1.3/capushe/man/capushe.Rd | 220 ++---- capushe-1.1.3/capushe/man/datacapushe.Rd | 133 +-- capushe-1.1.3/capushe/man/datapartialcapushe.Rd |only capushe-1.1.3/capushe/man/datavalidcapushe.Rd |only capushe-1.1.3/capushe/man/plot-methods.Rd | 118 +-- capushe-1.1.3/capushe/man/validation.Rd | 142 +-- capushe-1.1.3/capushe/tests |only 26 files changed, 2049 insertions(+), 1581 deletions(-)
Title: Simulating Pollen Curves from Virtual Taxa with Different Life
and Niche Traits
Description: Tools to generate virtual environmental drivers with a given temporal autocorrelation, and to simulate pollen curves at annual resolution over millennial time-scales based on these drivers and virtual taxa with different life traits and niche features. It also provides the means to simulate quasi-realistic pollen-data conditions by applying simulated accumulation rates and given depth intervals between consecutive samples.
Author: Blas M. Benito [aut, cre]
Maintainer: Blas M. Benito <blasbenito@gmail.com>
Diff between virtualPollen versions 1.0.1 dated 2022-02-13 and 1.0.2 dated 2025-09-10
virtualPollen-1.0.1/virtualPollen/build |only virtualPollen-1.0.1/virtualPollen/inst |only virtualPollen-1.0.1/virtualPollen/vignettes |only virtualPollen-1.0.2/virtualPollen/DESCRIPTION | 12 virtualPollen-1.0.2/virtualPollen/MD5 | 39 - virtualPollen-1.0.2/virtualPollen/NEWS.md | 14 virtualPollen-1.0.2/virtualPollen/R/parametersCheck.R | 248 +++--- virtualPollen-1.0.2/virtualPollen/R/plotSimulation.R | 2 virtualPollen-1.0.2/virtualPollen/R/simulateDriverS.R | 314 ++++---- virtualPollen-1.0.2/virtualPollen/R/simulatePopulation.R | 27 virtualPollen-1.0.2/virtualPollen/R/toRegularTime.R | 3 virtualPollen-1.0.2/virtualPollen/README.md | 358 +++++----- virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-10-1.png |only virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-11-1.png |only virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-4-1.png |binary virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-5-1.png |binary virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-6-1.png |binary virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-6-2.png |only virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-7-1.png |binary virtualPollen-1.0.2/virtualPollen/man/figures/README-unnamed-chunk-8-1.png |binary virtualPollen-1.0.2/virtualPollen/man/parametersCheck.Rd | 6 virtualPollen-1.0.2/virtualPollen/man/simulatePopulation.Rd | 4 22 files changed, 566 insertions(+), 461 deletions(-)
Title: A Bayesian Hierarchical Model that Controls for Non-Adherence in
Mobile Menstrual Cycle Tracking
Description: Implements a Bayesian hierarchical model designed to identify skips in mobile menstrual cycle self-tracking on mobile apps. Future developments will allow for the inclusion of covariates affecting cycle mean and regularity, as well as extra information regarding tracking non-adherence. Main methods to be outlined in a forthcoming paper, with alternative models from Li et al. (2022) <doi:10.1093/jamia/ocab182>.
Author: Luke Duttweiler [aut, cre, cph]
Maintainer: Luke Duttweiler <lduttweiler@hsph.harvard.edu>
Diff between skipTrack versions 0.1.2 dated 2025-01-27 and 0.2.0 dated 2025-09-10
skipTrack-0.1.2/skipTrack/man/postMui.Rd |only skipTrack-0.2.0/skipTrack/DESCRIPTION | 10 skipTrack-0.2.0/skipTrack/MD5 | 38 +-- skipTrack-0.2.0/skipTrack/NEWS.md | 15 + skipTrack-0.2.0/skipTrack/R/MCMC.R | 103 ++++---- skipTrack-0.2.0/skipTrack/R/diagnostics.R | 6 skipTrack-0.2.0/skipTrack/R/posteriors.R | 119 +++++----- skipTrack-0.2.0/skipTrack/R/results.R | 10 skipTrack-0.2.0/skipTrack/R/visualization.R | 16 - skipTrack-0.2.0/skipTrack/README.md | 35 +- skipTrack-0.2.0/skipTrack/inst/doc/skipTrack_intro.html | 32 +- skipTrack-0.2.0/skipTrack/man/figures/README-unnamed-chunk-5-1.png |binary skipTrack-0.2.0/skipTrack/man/figures/README-unnamed-chunk-6-1.png |binary skipTrack-0.2.0/skipTrack/man/postB.Rd |only skipTrack-0.2.0/skipTrack/man/postBeta.Rd | 22 + skipTrack-0.2.0/skipTrack/man/postGamma.Rd | 4 skipTrack-0.2.0/skipTrack/man/postRho.Rd | 10 skipTrack-0.2.0/skipTrack/man/sampleStep.Rd | 12 - skipTrack-0.2.0/skipTrack/man/skipTrack.MCMC.Rd | 10 skipTrack-0.2.0/skipTrack/man/skipTrack.diagnostics.Rd | 2 skipTrack-0.2.0/skipTrack/tests/testthat/test-diagnostics.R | 2 21 files changed, 246 insertions(+), 200 deletions(-)
Title: Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Author: Samuel Marsh [aut, cre] ,
Ming Tang [ctb],
Velina Kozareva [ctb],
Lucas Graybuck [ctb],
Zoe Clarke [ctb]
Maintainer: Samuel Marsh <sccustomize@gmail.com>
Diff between scCustomize versions 3.1.3 dated 2025-08-26 and 3.2.0 dated 2025-09-10
DESCRIPTION | 8 - MD5 | 28 +++--- NAMESPACE | 1 NEWS.md | 20 ++++ R/Internal_Utilities.R | 4 R/LIGER_Plotting.R | 181 --------------------------------------- R/Object_Utilities.R | 118 +++++++++++++++++++++++++ R/Plotting_Seurat.R | 11 +- R/Plotting_Shared.R |only R/Plotting_Utilities_Internal.R | 4 R/Read_&_Write_Data.R | 20 +++- R/Utilities.R | 14 +-- man/Factor_Cor_Plot.Rd | 14 +-- man/ReFilter_SeuratObject.Rd |only man/Read_Add_cNMF.Rd | 12 ++ man/Reduction_Loading_Present.Rd | 12 +- 16 files changed, 217 insertions(+), 230 deletions(-)
Title: Transformations for Unit-Level Small Area Models
Description: The aim of this package is to offer new methodology for unit-level
small area models under transformations and limited population auxiliary
information. In addition to this new methodology, the widely used nested
error regression model without transformations (see "An Error-Components
Model for Prediction of County Crop Areas Using Survey and Satellite Data"
by Battese, Harter and Fuller (1988) <doi:10.1080/01621459.1988.10478561>)
and its well-known uncertainty estimate (see "The estimation of the mean
squared error of small-area estimators" by Prasad and Rao (1990)
<doi:10.1080/01621459.1995.10476570>) are provided. In this package, the
log transformation and the data-driven log-shift transformation are
provided. If a transformation is selected, an appropriate method is chosen
depending on the respective input of the population data: Individual
population data (see "Empirical best prediction under a nested error model
with log transformation" by Molina and Martín (2018)
& [...truncated...]
Author: Nora Wuerz [aut, cre]
Maintainer: Nora Wuerz <nora.wuerz@uni-bamberg.de>
Diff between saeTrafo versions 1.0.4 dated 2024-06-10 and 1.0.6 dated 2025-09-10
DESCRIPTION | 14 MD5 | 18 R/MSE.R | 966 +++++++++++++++++++++++------------------------ R/compare.R | 294 +++++++------- R/framework_NER.R | 358 ++++++++--------- R/point_estimation_NER.R | 628 +++++++++++++++--------------- R/write.excel.saeTrafo.R | 700 +++++++++++++++++----------------- build/vignette.rds |binary man/compare_pred.Rd | 2 man/write.excel.Rd | 4 10 files changed, 1494 insertions(+), 1490 deletions(-)
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://rave.wiki>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre],
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlage [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.2.3 dated 2025-07-22 and 0.2.4 dated 2025-09-10
ravetools-0.2.3/ravetools/man/interpolate_stimulation.Rd |only ravetools-0.2.4/ravetools/DESCRIPTION | 6 ++-- ravetools-0.2.4/ravetools/MD5 | 21 ++++++++++----- ravetools-0.2.4/ravetools/NAMESPACE | 10 ++++++- ravetools-0.2.4/ravetools/NEWS.md | 6 ++++ ravetools-0.2.4/ravetools/R/aaa.R | 11 +++++++ ravetools-0.2.4/ravetools/R/find_peaks.R |only ravetools-0.2.4/ravetools/R/gammatone.R | 2 - ravetools-0.2.4/ravetools/R/interpolate.R | 2 - ravetools-0.2.4/ravetools/R/nmf.R |only ravetools-0.2.4/ravetools/R/stimulation_pauses.R |only ravetools-0.2.4/ravetools/data/stimulation_signal.rda |only ravetools-0.2.4/ravetools/man/find_peaks.Rd |only ravetools-0.2.4/ravetools/man/naive_nmf.Rd |only ravetools-0.2.4/ravetools/man/stimpulse_interpolate.Rd |only ravetools-0.2.4/ravetools/man/stimulation_signal.Rd |only 16 files changed, 45 insertions(+), 13 deletions(-)
Title: Reproducible Pipeline Infrastructure for Neuroscience
Description: Defines the underlying pipeline structure for reproducible
neuroscience, adopted by 'RAVE' (reproducible analysis and visualization
of intracranial electroencephalography); provides high-level class
definition to build, compile, set, execute, and share analysis pipelines.
Both R and 'Python' are supported, with 'Markdown' and 'shiny' dashboard
templates for extending and building customized pipelines. See the full
documentations at <https://rave.wiki>; to cite us,
check out our paper by Magnotti, Wang, and Beauchamp (2020,
<doi:10.1016/j.neuroimage.2020.117341>), or run
citation("ravepipeline") for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [ctb, res],
Xiang Zhang [ctb, res],
Michael Beauchamp [ctb, res],
Trustees of University of Pennsylvania [cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravepipeline versions 0.0.1 dated 2025-03-13 and 0.0.3 dated 2025-09-10
DESCRIPTION | 19 MD5 | 99 +- NAMESPACE | 58 + NEWS.md | 46 R/aaa.R | 10 R/base64.R |only R/class-FileMap.R | 4 R/class-PipelineCollections.R |only R/class-PipelineTools.R | 199 +++- R/commons.R | 20 R/filearray.R |only R/filesys.R | 17 R/jobs.R |only R/logger.R |only R/options.R | 60 - R/parallel-lapply_jobs.R |only R/pipeline-docs.R | 1 R/pipeline-knitr.R | 10 R/pipeline-report.R |only R/pipeline-result.R | 3 R/pipeline-run.R | 90 + R/pipeline-serializers-brain.R |only R/pipeline-serializers-custom-py.R |only R/pipeline-serializers-custom-r.R |only R/pipeline-serializers-default.R |only R/pipeline-serializers-filearray.R |only R/pipeline-serializers.R | 919 ------------------- R/pipeline-target-helpers.R |only R/pipeline-tools.R | 67 - R/pkginstall.R | 52 - R/progress.R | 206 ++++ R/rstudio.R | 13 R/serialize.R |only R/snippet-install.R | 5 R/string.R | 59 - R/yaml.R | 49 - R/zzz.R | 7 inst/rave-modules/template/R/loader.R | 2 inst/rave-pipelines/template-py/migrate.R | 11 inst/rave-pipelines/template-r/make-TEMPLATE.R | 10 inst/rave-pipelines/template-r/migrate.R | 11 inst/rave-pipelines/template-rmd-bare/migrate.R | 11 inst/rave-pipelines/template-rmd-scheduler/migrate.R | 11 inst/rave-pipelines/template-rmd/main.Rmd | 4 inst/rave-pipelines/template-rmd/migrate.R | 11 man/PipelineCollections.Rd |only man/PipelineResult.Rd | 6 man/PipelineTools.Rd | 100 +- man/RAVEFileArray.Rd |only man/RAVESerializable.Rd |only man/base64-utils.Rd |only man/dir_create2.Rd |only man/logger.Rd |only man/pipeline_collection.Rd |only man/rave-pipeline-jobs.Rd |only man/rave-pipeline.Rd | 4 man/rave-serialize-refhook.Rd |only man/rave_progress.Rd |only man/read-write-yaml.Rd |only man/reexports.Rd | 6 man/with_rave_parallel.Rd |only tests/testthat.R | 4 tests/testthat/test-class-PipelineTools.R | 213 ++-- tests/testthat/test-parallel-lapply_jobs.R |only 64 files changed, 1162 insertions(+), 1255 deletions(-)
Title: Visualize Results of Statistical Hypothesis Tests
Description: Provides functionality to produce graphs of sampling distributions of test statistics from a variety of common statistical tests. With only a few keystrokes, the user can conduct a hypothesis test and visualize the test statistic and corresponding p-value through the shading of its sampling distribution. Initially created for statistics at Middlebury College.
Author: Michael Czekanski [aut, cre],
Alex Lyford [aut]
Maintainer: Michael Czekanski <mczekanski@middlebury.edu>
Diff between mcStats versions 0.1.2 dated 2020-02-26 and 0.1.3 dated 2025-09-10
DESCRIPTION | 9 ++++----- MD5 | 12 ++++++------ NEWS.md | 3 +++ R/CtsHypothesisTests.R | 9 +++++---- README.md | 2 +- man/showT.Test.Rd | 11 ++++++++++- tests/testthat/testGraphs.R | 6 +++--- 7 files changed, 32 insertions(+), 20 deletions(-)
Title: Multivariate Autoregressive State-Space Modeling
Description: The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstrained linear multivariate autoregressive
state-space (MARSS) models, including partially deterministic models. MARSS models are a class
of dynamic linear model (DLM) and vector autoregressive model (VAR)
model. Fitting available via Expectation-Maximization (EM), BFGS (using optim), and 'TMB'
(using the 'marssTMB' companion package). Functions are provided for parametric and
innovations bootstrapping, Kalman filtering and smoothing, model selection criteria including
bootstrap AICb, confidences intervals via the Hessian approximation or bootstrapping, and all
conditional residual types. See the user guide for examples of dynamic factor analysis,
dynamic linear models, outlier and shock detection, and multivariate AR-p models.
Online workshops (lectures, eBook, and computer labs)
at <https://atsa-es.github.io/>.
Author: Elizabeth Eli Holmes [aut, cre] ,
Eric J. Ward [aut] ,
Mark D. Scheuerell [aut] ,
Kellie Wills [aut]
Maintainer: Elizabeth Eli Holmes <eli.holmes@noaa.gov>
Diff between MARSS versions 3.11.9 dated 2024-02-19 and 3.11.10 dated 2025-09-10
DESCRIPTION | 21 +++++++++++---------- MD5 | 16 ++++++++-------- NEWS.md | 2 +- build/vignette.rds |binary inst/doc/EMDerivation.pdf |binary inst/doc/Quick_Start.R | 8 ++++---- inst/doc/Residuals.pdf |binary inst/doc/UserGuide.pdf |binary man/MARSSFisherI.Rd | 4 ++-- 9 files changed, 26 insertions(+), 25 deletions(-)
Title: Extra Graphical Utilities Based on Lattice
Description: Building on the infrastructure provided by the lattice
package, this package provides several new high-level
functions and methods, as well as additional utilities
such as panel and axis annotation functions.
Author: Deepayan Sarkar [aut, cre] ,
Felix Andrews [aut]
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between latticeExtra versions 0.6-30 dated 2022-07-04 and 0.6-31 dated 2025-09-10
DESCRIPTION | 17 +++++++--- MD5 | 73 +++++++++++++++++++++++----------------------- README.md |only man/as.layer.Rd | 2 - man/c.trellis.Rd | 12 +++---- man/combineLimits.Rd | 2 - man/custom.theme.Rd | 6 +-- man/dendrogramGrob.Rd | 6 +-- man/doubleYScale.Rd | 2 - man/ecdfplot.Rd | 6 +-- man/ggplot2like.theme.Rd | 8 ++--- man/horizonplot.Rd | 14 ++++---- man/layer.Rd | 8 ++--- man/mapplot.Rd | 4 +- man/marginal.plot.Rd | 12 +++---- man/panel.2dsmoother.Rd | 4 +- man/panel.3dmisc.Rd | 4 +- man/panel.ellipse.Rd | 2 - man/panel.key.Rd | 10 +++--- man/panel.lmlineq.Rd | 20 ++++++------ man/panel.qqmath.tails.Rd | 12 +++---- man/panel.scaleArrow.Rd | 6 +-- man/panel.segplot.Rd | 4 +- man/panel.smoother.Rd | 2 - man/panel.tskernel.Rd | 4 +- man/panel.voronoi.Rd | 10 +++--- man/panel.xblocks.Rd | 4 +- man/panel.xyarea.Rd | 10 +++--- man/panel.xyimage.Rd | 10 +++--- man/postdoc.Rd | 2 - man/resizePanels.Rd | 3 - man/rootogram.Rd | 4 +- man/scale.components.Rd | 4 +- man/segplot.Rd | 12 +++---- man/theEconomist.theme.Rd | 6 +-- man/tileplot.Rd | 6 +-- man/useOuterStrips.Rd | 5 +-- man/xyplot.stl.Rd | 16 ++++------ 38 files changed, 168 insertions(+), 164 deletions(-)
Title: Implement Descriptive Studies Using the Common Data Model
Description: An end-to-end framework that enables users to implement various descriptive studies for a given set of target and outcome cohorts for data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Author: Jenna Reps [aut, cre],
Patrick Ryan [aut],
Chris Knoll [aut]
Maintainer: Jenna Reps <jreps@its.jnj.com>
Diff between Characterization versions 2.1.3 dated 2025-03-04 and 2.2.0 dated 2025-09-10
Characterization-2.1.3/Characterization/tests/testthat/testthat-problems.rds |only Characterization-2.2.0/Characterization/DESCRIPTION | 19 Characterization-2.2.0/Characterization/MD5 | 186 Characterization-2.2.0/Characterization/NAMESPACE | 46 Characterization-2.2.0/Characterization/R/AggregateCovariates.R | 2232 +++--- Characterization-2.2.0/Characterization/R/Characterization.R | 44 Characterization-2.2.0/Characterization/R/CustomCovariates.R | 889 +- Characterization-2.2.0/Characterization/R/Database.R | 762 +- Characterization-2.2.0/Characterization/R/DechallengeRechallenge.R | 1092 +-- Characterization-2.2.0/Characterization/R/HelperFunctions.R | 602 - Characterization-2.2.0/Characterization/R/Incremental.R | 438 - Characterization-2.2.0/Characterization/R/RunCharacterization.R | 1247 +-- Characterization-2.2.0/Characterization/R/SaveLoad.R | 529 - Characterization-2.2.0/Characterization/R/TimeToEvent.R | 670 - Characterization-2.2.0/Characterization/R/ViewShiny.R | 545 - Characterization-2.2.0/Characterization/build/vignette.rds |binary Characterization-2.2.0/Characterization/inst/doc/Specification.R | 1118 +-- Characterization-2.2.0/Characterization/inst/doc/Specification.Rmd | 1600 ++-- Characterization-2.2.0/Characterization/inst/doc/Specification.html | 3419 +++++----- Characterization-2.2.0/Characterization/inst/doc/UsingPackage.R | 320 Characterization-2.2.0/Characterization/inst/doc/UsingPackage.Rmd | 540 - Characterization-2.2.0/Characterization/inst/doc/UsingPackage.html | 709 +- Characterization-2.2.0/Characterization/inst/settings/resultsDataModelSpecification.csv | 240 Characterization-2.2.0/Characterization/inst/shinyConfig.json | 64 Characterization-2.2.0/Characterization/inst/shinyConfigUpdate.json | 52 Characterization-2.2.0/Characterization/inst/sql/postgresql/migrations/Migration_2-v2_1_1_mean_exposure_time_type.sql | 16 Characterization-2.2.0/Characterization/inst/sql/sql_server/CaseCohortsPart1.sql | 186 Characterization-2.2.0/Characterization/inst/sql/sql_server/CaseCohortsPart2.sql | 200 Characterization-2.2.0/Characterization/inst/sql/sql_server/ConceptCountsDuring.sql | 505 - Characterization-2.2.0/Characterization/inst/sql/sql_server/DechallengeRechallenge.sql | 342 - Characterization-2.2.0/Characterization/inst/sql/sql_server/DomainConceptDuring.sql | 153 Characterization-2.2.0/Characterization/inst/sql/sql_server/DomainConceptGroupDuring.sql | 299 Characterization-2.2.0/Characterization/inst/sql/sql_server/DropCaseCovariate.sql | 72 Characterization-2.2.0/Characterization/inst/sql/sql_server/DropDechallengeRechallenge.sql | 20 Characterization-2.2.0/Characterization/inst/sql/sql_server/DropRechallengeFailCaseSeries.sql | 22 Characterization-2.2.0/Characterization/inst/sql/sql_server/DropTargetCovariate.sql | 48 Characterization-2.2.0/Characterization/inst/sql/sql_server/DropTimeToEvent.sql | 76 Characterization-2.2.0/Characterization/inst/sql/sql_server/GetTimeToEvent.sql | 20 Characterization-2.2.0/Characterization/inst/sql/sql_server/IncludeDescendants.sql | 52 Characterization-2.2.0/Characterization/inst/sql/sql_server/RechallengeFailCaseSeries.sql | 122 Characterization-2.2.0/Characterization/inst/sql/sql_server/ResultTables.sql | 326 Characterization-2.2.0/Characterization/inst/sql/sql_server/TargetCohorts.sql | 132 Characterization-2.2.0/Characterization/inst/sql/sql_server/TimeToEvent.sql | 652 - Characterization-2.2.0/Characterization/inst/sql/sql_server/UpdateVersionNumber.sql | 10 Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_1-v0_3_0_store_version.sql | 32 Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_2-v2_1_1_mean_exposure_time_type.sql | 18 Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_3-v2_2_0_count_as_bigint.sql |only Characterization-2.2.0/Characterization/inst/sql/sqlite/migrations/Migration_2-v2_1_1_mean_exposure_time_type.sql | 78 Characterization-2.2.0/Characterization/man/Characterization-package.Rd | 60 Characterization-2.2.0/Characterization/man/cleanIncremental.Rd | 70 Characterization-2.2.0/Characterization/man/cleanNonIncremental.Rd | 60 Characterization-2.2.0/Characterization/man/computeDechallengeRechallengeAnalyses.Rd | 165 Characterization-2.2.0/Characterization/man/computeRechallengeFailCaseSeriesAnalyses.Rd | 169 Characterization-2.2.0/Characterization/man/computeTimeToEventAnalyses.Rd | 175 Characterization-2.2.0/Characterization/man/createAggregateCovariateSettings.Rd | 182 Characterization-2.2.0/Characterization/man/createCharacterizationSettings.Rd | 96 Characterization-2.2.0/Characterization/man/createCharacterizationTables.Rd | 118 Characterization-2.2.0/Characterization/man/createDechallengeRechallengeSettings.Rd | 84 Characterization-2.2.0/Characterization/man/createDuringCovariateSettings.Rd | 222 Characterization-2.2.0/Characterization/man/createSqliteDatabase.Rd | 64 Characterization-2.2.0/Characterization/man/createTimeToEventSettings.Rd | 68 Characterization-2.2.0/Characterization/man/exampleOmopConnectionDetails.Rd | 54 Characterization-2.2.0/Characterization/man/getDbDuringCovariateData.Rd | 168 Characterization-2.2.0/Characterization/man/insertResultsToDatabase.Rd | 170 Characterization-2.2.0/Characterization/man/loadCharacterizationSettings.Rd | 100 Characterization-2.2.0/Characterization/man/runCharacterizationAnalyses.Rd | 220 Characterization-2.2.0/Characterization/man/saveCharacterizationSettings.Rd | 90 Characterization-2.2.0/Characterization/man/viewCharacterization.Rd | 109 Characterization-2.2.0/Characterization/tests/testthat.R | 4 Characterization-2.2.0/Characterization/tests/testthat/setup.R | 16 Characterization-2.2.0/Characterization/tests/testthat/test-Database.R | 124 Characterization-2.2.0/Characterization/tests/testthat/test-Incremental.R | 684 +- Characterization-2.2.0/Characterization/tests/testthat/test-aggregateCovariate.R | 1044 +-- Characterization-2.2.0/Characterization/tests/testthat/test-dbs.R | 548 - Characterization-2.2.0/Characterization/tests/testthat/test-dechallengeRechallenge.R | 772 +- Characterization-2.2.0/Characterization/tests/testthat/test-manualData.R | 1002 +- Characterization-2.2.0/Characterization/tests/testthat/test-runCharacterization.R | 936 +- Characterization-2.2.0/Characterization/tests/testthat/test-timeToEvent.R | 212 Characterization-2.2.0/Characterization/tests/testthat/test-viewShiny.R | 255 Characterization-2.2.0/Characterization/tests/testthat/testdata |only Characterization-2.2.0/Characterization/vignettes/Specification.Rmd | 1600 ++-- Characterization-2.2.0/Characterization/vignettes/UsingPackage.Rmd | 540 - 82 files changed, 15679 insertions(+), 15246 deletions(-)
More information about Characterization at CRAN
Permanent link
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, distributed data exploration service from Microsoft: <https://azure.microsoft.com/en-us/products/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] ,
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.1.3 dated 2023-10-12 and 1.1.4 dated 2025-09-10
DESCRIPTION | 8 LICENSE | 4 MD5 | 212 +-- NAMESPACE | 351 ++--- NEWS.md | 129 +- R/AzureKusto.R | 30 R/add_methods.R | 300 ++-- R/az_database.R | 278 ++-- R/az_kusto.R | 296 ++-- R/dbi.R | 732 +++++------ R/endpoint.R | 576 ++++----- R/ident.R | 60 R/ingest.R | 582 ++++----- R/kql-build.R | 720 +++++------ R/kql-escape.R | 444 +++--- R/kql-render.R | 96 - R/kusto_token.R | 264 ++-- R/ops.R | 622 ++++----- R/partial_eval.R | 352 ++--- R/query.R | 472 +++---- R/reexport-dplyr.R | 32 R/tbl.R | 1078 ++++++++-------- R/translate-kql.R | 876 ++++++------- README.md | 550 ++++---- build/vignette.rds |binary inst/doc/AzureKusto.R | 360 ++--- inst/doc/AzureKusto.Rmd | 526 ++++---- inst/doc/AzureKusto.html | 954 +++++++++----- man/AzureKusto.Rd | 116 - man/AzureKustoConnection-class.Rd | 20 man/AzureKustoDriver-class.Rd | 20 man/AzureKustoResult-class.Rd | 20 man/DBI_query.Rd | 144 +- man/DBI_table.Rd | 148 +- man/add_op_join.Rd | 82 - man/add_op_set_op.Rd | 36 man/add_op_single.Rd | 40 man/az_kusto.Rd | 152 +- man/az_kusto_database.Rd | 138 +- man/base_agg.Rd | 32 man/base_scalar.Rd | 32 man/base_window.Rd | 32 man/build_kql.Rd | 38 man/collect.tbl_kusto.Rd | 36 man/compute.tbl_kusto.Rd | 38 man/copy_to.kusto_database_endpoint.Rd | 76 - man/create_kusto_cluster.Rd | 108 - man/database_endpoint.Rd | 248 +-- man/delete_kusto_cluster.Rd | 98 - man/escape.Rd | 56 man/export.Rd | 132 +- man/flatten_query.Rd | 32 man/get_kusto_cluster.Rd | 102 - man/get_kusto_token.Rd | 162 +- man/ident.Rd | 28 man/ident_q.Rd | 28 man/ingest.Rd | 256 ++-- man/is.Rd | 34 man/join.Rd | 288 ++-- man/kql.Rd | 28 man/kql_aggregate.Rd | 28 man/kql_build.Rd | 28 man/kql_build.op_mutate.Rd | 52 man/kql_escape_ident.Rd | 28 man/kql_escape_ident_q.Rd | 28 man/kql_escape_logical.Rd | 32 man/kql_escape_string.Rd | 28 man/kql_infix.Rd | 28 man/kql_prefix.Rd | 32 man/kql_quote.Rd | 46 man/kql_render.Rd | 32 man/kql_translate_env.Rd | 26 man/kql_translator.Rd | 36 man/kql_window.Rd | 28 man/kusto-DBI.Rd | 48 man/kusto_export_cmd.Rd | 62 man/nest.tbl_kusto_abstract.Rd | 32 man/op_base.Rd | 36 man/op_double.Rd | 40 man/op_grps.Rd | 32 man/op_single.Rd | 40 man/op_vars.Rd | 32 man/partial_eval.Rd | 112 - man/reexports.Rd | 40 man/run_query.Rd | 78 - man/show_query.tbl_kusto_abstract.Rd | 32 man/summarise.Rd | 96 - man/tbl_kusto.Rd | 36 man/tbl_kusto_abstract.Rd | 42 man/translate_kql.Rd | 28 man/unnest.tbl_kusto_abstract.Rd | 104 - tests/resources/iris.csv | 300 ++-- tests/resources/iris.json | 2104 ++++++++++++++++----------------- tests/testthat.R | 8 tests/testthat/test00_token.R | 196 +-- tests/testthat/test01_database.R | 174 +- tests/testthat/test02_query.R | 166 +- tests/testthat/test03_resource.R | 160 +- tests/testthat/test04_ingest.R | 350 ++--- tests/testthat/test05_dbi.R | 216 +-- tests/testthat/test06_dplyr.R | 400 +++--- tests/testthat/test_escape.r | 122 - tests/testthat/test_kql_build.R | 50 tests/testthat/test_partial_eval.R | 64 - tests/testthat/test_query_params.R | 76 - tests/testthat/test_translate.r | 1594 ++++++++++++------------- vignettes/AzureKusto.Rmd | 526 ++++---- 107 files changed, 10898 insertions(+), 10654 deletions(-)
Title: Automatic Plotting of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 0.2.0 dated 2025-08-22 and 0.4.0 dated 2025-09-10
autograph-0.2.0/autograph/R/map_autograph.R |only autograph-0.2.0/autograph/R/plot_monan.R |only autograph-0.2.0/autograph/R/plot_rsiena.R |only autograph-0.2.0/autograph/data/res_monan_gof.rda |only autograph-0.2.0/autograph/data/res_monan_traces.rda |only autograph-0.2.0/autograph/data/res_siena_gof.rda |only autograph-0.2.0/autograph/data/res_siena_influence.rda |only autograph-0.2.0/autograph/data/res_siena_selection.rda |only autograph-0.2.0/autograph/man/map_graphr.Rd |only autograph-0.2.0/autograph/man/map_graphs.Rd |only autograph-0.2.0/autograph/man/map_grapht.Rd |only autograph-0.2.0/autograph/man/map_scales.Rd |only autograph-0.2.0/autograph/man/match_color.Rd |only autograph-0.2.0/autograph/man/plot.influenceTable.Rd |only autograph-0.2.0/autograph/man/plot.selectionTable.Rd |only autograph-0.2.0/autograph/man/plot.sienaGOF.Rd |only autograph-0.2.0/autograph/man/plot_monan_gof.Rd |only autograph-0.2.0/autograph/man/plot_monan_trace.Rd |only autograph-0.2.0/autograph/man/plus-.ggplot.Rd |only autograph-0.2.0/autograph/tests/testthat/test-map_autograph.R |only autograph-0.2.0/autograph/tests/testthat/test-map_palettes.R |only autograph-0.2.0/autograph/tests/testthat/test-map_plot_manynet.R |only autograph-0.2.0/autograph/tests/testthat/test-map_plot_rsiena.R |only autograph-0.2.0/autograph/tests/testthat/test-map_theme.R |only autograph-0.4.0/autograph/DESCRIPTION | 18 autograph-0.4.0/autograph/MD5 | 99 ++-- autograph-0.4.0/autograph/NAMESPACE | 19 autograph-0.4.0/autograph/NEWS.md | 123 +++++ autograph-0.4.0/autograph/R/autograph-package.R |only autograph-0.4.0/autograph/R/autograph_utilities.R | 10 autograph-0.4.0/autograph/R/data_precooked.R | 38 + autograph-0.4.0/autograph/R/layout_configurational.R | 17 autograph-0.4.0/autograph/R/plot_convergence.R |only autograph-0.4.0/autograph/R/plot_gof.R |only autograph-0.4.0/autograph/R/plot_graphr.R |only autograph-0.4.0/autograph/R/plot_graphs.R |only autograph-0.4.0/autograph/R/plot_grapht.R |only autograph-0.4.0/autograph/R/plot_interp.R |only autograph-0.4.0/autograph/R/theme_match.R |only autograph-0.4.0/autograph/R/theme_palettes.R | 69 -- autograph-0.4.0/autograph/R/theme_scales.R | 236 +--------- autograph-0.4.0/autograph/R/theme_set.R | 111 +++- autograph-0.4.0/autograph/R/zzz.R | 21 autograph-0.4.0/autograph/README.md | 216 +++++---- autograph-0.4.0/autograph/data/ergm_gof.rda |only autograph-0.4.0/autograph/data/ergm_res.rda |only autograph-0.4.0/autograph/data/monan_conv.rda |only autograph-0.4.0/autograph/data/monan_gof.rda |only autograph-0.4.0/autograph/data/siena_gof.rda |only autograph-0.4.0/autograph/data/siena_influence.rda |only autograph-0.4.0/autograph/data/siena_selection.rda |only autograph-0.4.0/autograph/inst/CITATION |only autograph-0.4.0/autograph/inst/tutorials |only autograph-0.4.0/autograph/man/ag_call.Rd | 3 autograph-0.4.0/autograph/man/autograph-package.Rd |only autograph-0.4.0/autograph/man/figures/README-layout-comparison-1.png |only autograph-0.4.0/autograph/man/figures/README-siena-ergm-gof-1.png |only autograph-0.4.0/autograph/man/figures/README-siena-ergm-gof-2.png |only autograph-0.4.0/autograph/man/layout_configuration.Rd | 38 - autograph-0.4.0/autograph/man/layout_partition.Rd | 6 autograph-0.4.0/autograph/man/made_earlier.Rd | 30 - autograph-0.4.0/autograph/man/plot_convergence.Rd |only autograph-0.4.0/autograph/man/plot_gof.Rd |only autograph-0.4.0/autograph/man/plot_graphr.Rd |only autograph-0.4.0/autograph/man/plot_graphs.Rd |only autograph-0.4.0/autograph/man/plot_grapht.Rd |only autograph-0.4.0/autograph/man/plot_interp.Rd |only autograph-0.4.0/autograph/man/theme_match.Rd |only autograph-0.4.0/autograph/man/theme_scales.Rd | 115 ++++ autograph-0.4.0/autograph/man/theme_set.Rd | 48 +- autograph-0.4.0/autograph/tests/testthat/test-layout_configurational.R |only autograph-0.4.0/autograph/tests/testthat/test-layout_valence.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_convergence.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_gof.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_graphr.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_manynet.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_migraph.R |only autograph-0.4.0/autograph/tests/testthat/test-plot_rsiena.R |only autograph-0.4.0/autograph/tests/testthat/test-theme_match.R |only autograph-0.4.0/autograph/tests/testthat/test-theme_scales.R |only autograph-0.4.0/autograph/tests/testthat/test-theme_set.R |only 81 files changed, 704 insertions(+), 513 deletions(-)
Title: Fast Interactive Framework for Web Scripting Using R
Description: Infrastrcture for creating rich, dynamic web content using R scripts while maintaining very fast response time.
Author: Simon Urbanek [aut, cre, cph] ,
Jeffrey Horner [aut]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between FastRWeb versions 1.2-1 dated 2023-11-28 and 1.2-3 dated 2025-09-10
DESCRIPTION | 14 +++++++++----- MD5 | 8 ++++---- NEWS | 6 ++++++ R/run.R | 12 ++++++++++-- man/WebPlot.Rd | 6 +++--- 5 files changed, 32 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-18 0.1.3
2022-10-09 0.1.2
2021-01-11 0.1.1
2020-07-30 0.1.0