Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.2.6 dated 2025-07-14 and 0.3.0 dated 2025-09-11
CopernicusMarine-0.2.6/CopernicusMarine/R/cms_download_stac.r |only CopernicusMarine-0.2.6/CopernicusMarine/R/cms_list_stac_files.r |only CopernicusMarine-0.2.6/CopernicusMarine/R/cms_stac_properties.r |only CopernicusMarine-0.2.6/CopernicusMarine/man/cms_stac.Rd |only CopernicusMarine-0.3.0/CopernicusMarine/DESCRIPTION | 21 CopernicusMarine-0.3.0/CopernicusMarine/MD5 | 72 - CopernicusMarine-0.3.0/CopernicusMarine/NAMESPACE | 4 CopernicusMarine-0.3.0/CopernicusMarine/NEWS.md | 7 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_catalogue_entry.R | 3 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_cite_product.r | 48 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_download_native.R | 53 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_download_subset.r | 593 +++++++++- CopernicusMarine-0.3.0/CopernicusMarine/R/cms_login.r | 249 ++-- CopernicusMarine-0.3.0/CopernicusMarine/R/cms_product_details.r | 14 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_product_metadata.r | 9 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_product_services.r | 2 CopernicusMarine-0.3.0/CopernicusMarine/R/cms_products_list.r | 216 +-- CopernicusMarine-0.3.0/CopernicusMarine/R/cms_wmts.r | 33 CopernicusMarine-0.3.0/CopernicusMarine/R/generics.r | 126 +- CopernicusMarine-0.3.0/CopernicusMarine/R/import.r | 2 CopernicusMarine-0.3.0/CopernicusMarine/README.md | 75 - CopernicusMarine-0.3.0/CopernicusMarine/man/account.Rd | 88 - CopernicusMarine-0.3.0/CopernicusMarine/man/cms_download_native.Rd | 141 +- CopernicusMarine-0.3.0/CopernicusMarine/man/cms_download_subset.Rd | 58 CopernicusMarine-0.3.0/CopernicusMarine/man/cms_get_client_info.Rd | 55 CopernicusMarine-0.3.0/CopernicusMarine/man/cms_product_details.Rd | 8 CopernicusMarine-0.3.0/CopernicusMarine/man/cms_product_metadata.Rd | 6 CopernicusMarine-0.3.0/CopernicusMarine/man/cms_product_services.Rd | 2 CopernicusMarine-0.3.0/CopernicusMarine/man/cms_wmts.Rd | 33 CopernicusMarine-0.3.0/CopernicusMarine/man/figures/README-download-subset-1.png |binary CopernicusMarine-0.3.0/CopernicusMarine/man/figures/README-leaflet-1.png |binary CopernicusMarine-0.3.0/CopernicusMarine/man/figures/logo.svg | 350 ++--- CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/helper.r | 38 CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_dev.r | 52 CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_login.r | 74 - CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_native.r | 55 CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_product.r | 162 +- CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_subset.r | 87 + CopernicusMarine-0.3.0/CopernicusMarine/tests/testthat/test_wmts.r | 112 - 39 files changed, 1728 insertions(+), 1120 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Real-Time Disease Surveillance
Description: Supports modelling real-time case data to facilitate the real-time
surveillance of infectious diseases and other point phenomena. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Both Bayesian and maximum likelihood methods are provided. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441> and we provide both the low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and Riutort-Mayol et al (2023) <doi:10.1007/s11222-022-10167-2> and the
nearest neighbour Gaussian process described by Datta et al (2016) <doi:10.1080/01621459.2015.1044091>. 'cmdstanr' can be downloaded at <https://mc-stan.org/cmdstanr/>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
Diff between rts2 versions 0.8.3 dated 2025-07-08 and 0.9.1 dated 2025-09-11
DESCRIPTION | 12 +- MD5 | 43 ++++--- R/griddata_class.R | 164 +++++++++++++++++------------- R/print_mcmlrts.R | 4 R/stanmodels.R | 3 build/partial.rdb |binary inst/include/rts/ar1covariance.h | 34 ++++-- inst/include/rts/hsgpcovariance.h | 32 +++-- inst/include/rts/nngpcovariance.h | 45 +++++--- inst/include/rts/regiondata.h | 28 +++++ inst/include/rts/regionlinearpredictor.h | 45 ++++---- inst/include/rts/rtsregionmodel.h | 72 ++----------- inst/stan/rtslgcp_region.stan |only inst/stan/rtsmcml_poisson.stan | 22 +++- inst/stan/rtsmcml_poisson_region.stan | 4 man/grid.Rd | 40 ++++--- src/RcppExports.cpp | 2 src/stanExports_rtsbayes.cc | 34 +++--- src/stanExports_rtslgcp_region.cc |only src/stanExports_rtslgcp_region.h |only src/stanExports_rtsmcml_poisson.cc | 34 +++--- src/stanExports_rtsmcml_poisson.h | 138 +++++++++++++------------ src/stanExports_rtsmcml_poisson_region.cc | 34 +++--- src/stanExports_rtsmcml_poisson_region.h | 152 +++++++++++++++------------ 24 files changed, 527 insertions(+), 415 deletions(-)
Title: Limpa e Simplifica Nomes de Pessoas (Name Cleaner and
Simplifier)
Description: Limpa e simplifica nomes de pessoas para auxiliar no pareamento
de banco de dados na ausência de chaves únicas não ambíguas. Detecta e
corrige erros tipográficos mais comuns, simplifica opcionalmente termos
sujeitos eventualmente a omissão em cadastros, e simplifica foneticamente
suas palavras, aplicando variação própria do algoritmo metaphoneBR.
(Cleans and simplifies person names to assist in database matching when
unambiguous unique keys are unavailable. Detects and corrects common
typos, optionally simplifies terms prone to omission in records, and
applies phonetic simplification using a custom variation of the metaphoneBR
algorithm.)
Mation (2025) <doi:10.6082/uchicago.15104>.
Author: Rodrigo Borges [aut, cre] ,
Lucas Mation [aut] ,
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rodrigo Borges <rodrigoesborges@gmail.com>
Diff between nomesbr versions 0.0.7 dated 2025-07-17 and 0.0.9 dated 2025-09-11
nomesbr-0.0.7/nomesbr/man/NA_strings.Rd |only nomesbr-0.0.9/nomesbr/DESCRIPTION | 13 +++---------- nomesbr-0.0.9/nomesbr/MD5 | 17 ++++++++--------- nomesbr-0.0.9/nomesbr/NEWS.md | 8 ++++++++ nomesbr-0.0.9/nomesbr/R/regexes.R | 2 -- nomesbr-0.0.9/nomesbr/README.md | 12 +++++++++--- nomesbr-0.0.9/nomesbr/inst/doc/nomesbr.Rmd | 2 +- nomesbr-0.0.9/nomesbr/inst/doc/nomesbr.html | 2 +- nomesbr-0.0.9/nomesbr/man/nomesbr-package.Rd | 1 - nomesbr-0.0.9/nomesbr/vignettes/nomesbr.Rmd | 2 +- 10 files changed, 31 insertions(+), 28 deletions(-)
Title: Linear Regression and Logistic Regression with Missing
Covariates
Description: Estimate parameters of linear regression and logistic regression with missing covariates with missing data, perform model selection and prediction, using EM-type algorithms. Jiang W., Josse J., Lavielle M., TraumaBase Group (2020) <doi:10.1016/j.csda.2019.106907>.
Author: Wei Jiang [aut],
Pavlo Mozharovskyi [ctb],
Imke Mayer [ctb],
Christophe Muller [ctb],
Julie Josse [aut, cre]
Maintainer: Julie Josse <julie.josse@inria.fr>
Diff between misaem versions 1.0.1 dated 2021-04-12 and 1.1.0 dated 2025-09-11
DESCRIPTION | 33 MD5 | 97 +- NAMESPACE | 49 - NEWS.md | 114 +-- R/miss.glm.R | 160 ++-- R/miss.glm.control.R | 84 +- R/miss.glm.fit.R | 487 +++++++------ R/miss.glm.model.select.R | 192 ++--- R/miss.lm.R | 156 ++-- R/miss.lm.control.R | 48 - R/miss.lm.fit.R | 154 ++-- R/miss.lm.model.select.R | 180 ++-- R/predict.miss.glm.R | 269 +++---- R/predict.miss.lm.R | 166 ++-- R/print.miss.glm.R | 70 - R/print.miss.lm.R | 70 - R/print.summary.miss.glm.R | 56 - R/print.summary.miss.lm.R | 56 - R/summary.miss.glm.R | 48 - R/summary.miss.lm.R | 48 - R/zzz.R | 559 ++++++++------- README.md | 69 - build/vignette.rds |binary inst/CITATION | 40 - inst/doc/misaem.R | 367 +++++---- inst/doc/misaem.Rmd | 575 ++++++++------- inst/doc/misaem.html | 1555 ++++++++++++++++++++++-------------------- man/combinations.Rd | 40 - man/imputeEllP.Rd | 38 - man/initialize_df.Rd |only man/likelihood_saem.Rd | 124 +-- man/log_reg.Rd | 49 - man/louis_lr_saem.Rd | 130 +-- man/miss.glm.Rd | 118 +-- man/miss.glm.control.Rd | 113 +-- man/miss.glm.fit.Rd | 60 - man/miss.glm.model.select.Rd | 86 +- man/miss.lm.Rd | 114 +-- man/miss.lm.control.Rd | 48 - man/miss.lm.fit.Rd | 60 - man/miss.lm.model.select.Rd | 84 +- man/predict.miss.glm.Rd | 128 +-- man/predict.miss.lm.Rd | 126 +-- man/print.miss.glm.Rd | 48 - man/print.miss.lm.Rd | 48 - man/print.summary.miss.glm.Rd | 48 - man/print.summary.miss.lm.Rd | 48 - man/summary.miss.glm.Rd | 52 - man/summary.miss.lm.Rd | 52 - vignettes/misaem.Rmd | 575 ++++++++------- 50 files changed, 4111 insertions(+), 3780 deletions(-)
Title: Acquiring and Processing Data from Japan Institute for Health
Security
Description: Download and post process the infectious disease case data
from Japan Institute for Health Security. Also the package included
ready-to-analyse datasets. See the data source website for further details
<https://id-info.jihs.go.jp/>.
Author: Tomonori Hoshi [aut, cre],
Erina Ishigaki [aut],
Satoshi Kaneko [aut]
Maintainer: Tomonori Hoshi <tomonori.hoshi.japan@gmail.com>
Diff between jpinfect versions 0.1.2 dated 2025-06-04 and 0.1.3 dated 2025-09-11
jpinfect-0.1.2/jpinfect/R/zzz.R |only jpinfect-0.1.3/jpinfect/DESCRIPTION | 6 jpinfect-0.1.3/jpinfect/MD5 | 56 jpinfect-0.1.3/jpinfect/R/data.R | 10 jpinfect-0.1.3/jpinfect/R/globals.R |only jpinfect-0.1.3/jpinfect/R/jpinfect_get_bullet.R | 14 jpinfect-0.1.3/jpinfect/R/jpinfect_get_confirmed.R | 22 jpinfect-0.1.3/jpinfect/R/jpinfect_read_bullet.R | 19 jpinfect-0.1.3/jpinfect/R/jpinfect_read_confirmed.R | 6 jpinfect-0.1.3/jpinfect/data/bullet.rda |binary jpinfect-0.1.3/jpinfect/inst/doc/jpinfect.R | 4 jpinfect-0.1.3/jpinfect/inst/doc/jpinfect.Rmd | 15 jpinfect-0.1.3/jpinfect/inst/doc/jpinfect.html | 776 +++++----- jpinfect-0.1.3/jpinfect/man/bullet.Rd | 2 jpinfect-0.1.3/jpinfect/man/dot-col_join_rename.Rd | 36 jpinfect-0.1.3/jpinfect/man/dot-col_rename.Rd | 48 jpinfect-0.1.3/jpinfect/man/dot-col_rename_bullet.Rd | 46 jpinfect-0.1.3/jpinfect/man/dot-jpinfect_read_excel.Rd | 66 jpinfect-0.1.3/jpinfect/man/dot-jpinfect_read_excels.Rd | 62 jpinfect-0.1.3/jpinfect/man/dot-ncol_check.Rd | 38 jpinfect-0.1.3/jpinfect/man/jpinfect_get_bullet.Rd | 122 - jpinfect-0.1.3/jpinfect/man/jpinfect_get_confirmed.Rd | 96 - jpinfect-0.1.3/jpinfect/man/jpinfect_merge.Rd | 66 jpinfect-0.1.3/jpinfect/man/jpinfect_read_bullet.Rd | 16 jpinfect-0.1.3/jpinfect/man/jpinfect_read_confirmed.Rd | 90 - jpinfect-0.1.3/jpinfect/man/jpinfect_url_confirmed.Rd | 62 jpinfect-0.1.3/jpinfect/man/place_prefecture.Rd | 4 jpinfect-0.1.3/jpinfect/man/sex_prefecture.Rd | 4 jpinfect-0.1.3/jpinfect/tests/testthat/test-jpinfect_get_bullet.R | 12 jpinfect-0.1.3/jpinfect/vignettes/jpinfect.Rmd | 15 30 files changed, 870 insertions(+), 843 deletions(-)
Title: Fit Hidden Markov Models using Template Model Builder
Description: Fitting hidden Markov models using automatic differentiation
and Laplace approximation, allowing for fast inference and flexible covariate
effects (including random effects and smoothing splines) on model parameters.
The package is described by Michelot (2025) <doi:10.18637/jss.v114.i05>.
Author: Theo Michelot [aut, cre],
Richard Glennie [aut, ctb]
Maintainer: Theo Michelot <theo.michelot@dal.ca>
Diff between hmmTMB versions 1.1.0 dated 2025-06-24 and 1.1.1 dated 2025-09-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/hmm.R | 8 +++++++- README.md | 2 +- inst/CITATION | 22 ++++++++++++---------- inst/doc/hmmTMB_list_of_online_resources.pdf |binary 7 files changed, 36 insertions(+), 22 deletions(-)
Title: A 'ggplot2' Extension for Composable Visualization
Description: A 'ggplot2' extension providing an integrative framework for
composable visualization, enabling the creation of complex multi-plot
layouts such as insets, circular arrangements, and multi-panel compositions.
Built on the grammar of graphics, it offers tools to align, stack, and nest
plots, simplifying the construction of richly annotated figures for
high-dimensional data contexts—such as genomics, transcriptomics, and
microbiome studies—by making it easy to link related plots, overlay
clustering results, or highlight shared patterns.
Author: Yun Peng [aut, cre] ,
Shixiang Wang [aut] ,
Guangchuang Yu [ths]
Maintainer: Yun Peng <yunyunp96@163.com>
Diff between ggalign versions 1.0.2 dated 2025-05-14 and 1.1.0 dated 2025-09-11
ggalign-1.0.2/ggalign/R/craftbox-.R |only ggalign-1.0.2/ggalign/R/ggplot-utils.R |only ggalign-1.0.2/ggalign/R/grid-grob-channel.R |only ggalign-1.0.2/ggalign/R/grid-utils.R |only ggalign-1.0.2/ggalign/R/layout-chain-operator.R |only ggalign-1.0.2/ggalign/R/layout-quad-add.R |only ggalign-1.0.2/ggalign/R/with_quad.R |only ggalign-1.0.2/ggalign/man/LayoutProto-class.Rd |only ggalign-1.0.2/ggalign/man/cash-LayoutProto-method.Rd |only ggalign-1.0.2/ggalign/man/channelGrob.Rd |only ggalign-1.0.2/ggalign/man/element_curve.Rd |only ggalign-1.0.2/ggalign/man/element_polygon.Rd |only ggalign-1.0.2/ggalign/man/fortify_matrix.phylo.Rd |only ggalign-1.0.2/ggalign/man/patch.alignpatches.Rd |only ggalign-1.0.2/ggalign/man/plus-CraftBox-ANY-method.Rd |only ggalign-1.0.2/ggalign/man/show-CraftBox-method.Rd |only ggalign-1.0.2/ggalign/man/show-LayoutProto-method.Rd |only ggalign-1.0.2/ggalign/tests/testthat/_snaps/active.md |only ggalign-1.0.2/ggalign/tests/testthat/_snaps/grid |only 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ggalign-1.1.0/ggalign/tests/testthat/_snaps/plot-align/stack-no-data-hclust-input.svg | 98 - ggalign-1.1.0/ggalign/tests/testthat/helper-setup.R | 32 ggalign-1.1.0/ggalign/tests/testthat/test-active.R | 68 ggalign-1.1.0/ggalign/tests/testthat/test-align-hclust.R |only ggalign-1.1.0/ggalign/tests/testthat/test-align-phylo.R |only ggalign-1.1.0/ggalign/tests/testthat/test-alignpatch.R | 224 ++ ggalign-1.1.0/ggalign/tests/testthat/test-area.R |only ggalign-1.1.0/ggalign/tests/testthat/test-fortify-matrix.R | 80 ggalign-1.1.0/ggalign/tests/testthat/test-free-align.R |only ggalign-1.1.0/ggalign/tests/testthat/test-free-border.R |only ggalign-1.1.0/ggalign/tests/testthat/test-free-guide.R |only ggalign-1.1.0/ggalign/tests/testthat/test-free-lab.R |only ggalign-1.1.0/ggalign/tests/testthat/test-free-space.R |only ggalign-1.1.0/ggalign/tests/testthat/test-free-vp.R |only ggalign-1.1.0/ggalign/tests/testthat/test-genomic-helper.R |only ggalign-1.1.0/ggalign/tests/testthat/test-ggplot.R | 91 ggalign-1.1.0/ggalign/tests/testthat/test-grid.R | 95 ggalign-1.1.0/ggalign/tests/testthat/test-inset.R |only ggalign-1.1.0/ggalign/tests/testthat/test-layout-chain.R | 140 - ggalign-1.1.0/ggalign/tests/testthat/test-layout-circle.R |only ggalign-1.1.0/ggalign/tests/testthat/test-layout-cross.R | 8 ggalign-1.1.0/ggalign/tests/testthat/test-layout-heatmap.R | 115 + ggalign-1.1.0/ggalign/tests/testthat/test-layout-quad.R | 196 +- ggalign-1.1.0/ggalign/tests/testthat/test-layout-stack.R | 60 ggalign-1.1.0/ggalign/tests/testthat/test-link.R |only ggalign-1.1.0/ggalign/tests/testthat/test-mark.R |only ggalign-1.1.0/ggalign/tests/testthat/test-pair-links.R |only ggalign-1.1.0/ggalign/tests/testthat/test-patch.R |only ggalign-1.1.0/ggalign/tests/testthat/test-plot.R | 29 434 files changed, 15015 insertions(+), 12728 deletions(-)
Title: Cohort Generation for the OMOP Common Data Model
Description: Generate cohorts and subsets using an Observational
Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database.
Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or
SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Author: Anthony Sena [aut, cre],
Jamie Gilbert [aut],
Gowtham Rao [aut],
Freddy Avila Cruz [aut],
Martijn Schuemie [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>
Diff between CohortGenerator versions 0.12.1 dated 2025-09-05 and 0.12.2 dated 2025-09-11
DESCRIPTION | 8 ++--- MD5 | 14 ++++----- NEWS.md | 5 +++ inst/doc/CreatingCohortSubsetDefinitions.html | 4 +- inst/doc/GeneratingCohorts.pdf |binary inst/doc/SamplingCohorts.pdf |binary tests/testthat/setup.R | 2 - tests/testthat/test-Subsets.R | 39 +++++++++++++------------- 8 files changed, 39 insertions(+), 33 deletions(-)
More information about CohortGenerator at CRAN
Permanent link
Title: Automatic Plotting of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 0.4.0 dated 2025-09-10 and 0.4.1 dated 2025-09-11
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS.md | 16 ++++++++++++++++ R/plot_convergence.R | 31 ++++++++++++++++--------------- R/theme_set.R | 14 +++++++++++++- R/zzz.R | 5 ++--- man/plot_convergence.Rd | 6 +++--- man/theme_set.Rd | 2 +- tests/testthat/test-plot_convergence.R | 6 ++++-- 10 files changed, 70 insertions(+), 40 deletions(-)
Title: A Versatile Cutting Tool
Description: A tool for cutting data into intervals. Allows singleton intervals.
Always includes the whole range of data by default. Flexible labelling.
Convenience functions for cutting by quantiles etc. Handles dates, times, units
and other vectors.
Author: David Hugh-Jones [aut, cre],
Daniel Possenriede [ctb]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between santoku versions 1.0.0 dated 2024-06-04 and 1.1.0 dated 2025-09-11
DESCRIPTION | 6 MD5 | 107 +++--- NAMESPACE | 5 NEWS.md | 21 + R/breaks-by-group-size.R |only R/breaks-by-width.R |only R/breaks-impl.R | 2 R/breaks-misc.R |only R/breaks.R | 453 ++-------------------------- R/chop-by-group-size.R |only R/chop-by-width.R |only R/chop-isolates.R |only R/chop-misc.R |only R/chop.R | 408 +------------------------- R/labels-glue.R |only R/labels-impl.R | 40 +- R/labels-single.R |only R/labels.R | 404 +------------------------ R/santoku-package.R | 14 R/tab.R | 31 + R/utils.R | 22 - README.md | 10 build/vignette.rds |binary inst/doc/santoku.R | 12 inst/doc/santoku.Rmd | 41 ++ inst/doc/santoku.html | 547 ++++++++++++++++++----------------- inst/doc/whats-new-in-0-9-0.html | 3 man/brk_manual.Rd | 6 man/brk_width-for-datetime.Rd | 2 man/chop.Rd | 50 +-- man/chop_equally.Rd | 12 man/chop_evenly.Rd | 11 man/chop_fn.Rd | 5 man/chop_mean_sd.Rd | 3 man/chop_n.Rd | 9 man/chop_pretty.Rd | 2 man/chop_proportions.Rd | 3 man/chop_quantiles.Rd | 36 +- man/chop_spikes.Rd |only man/chop_width.Rd | 3 man/dissect.Rd |only man/fillet.Rd | 3 man/lbl_dash.Rd | 3 man/lbl_discrete.Rd | 5 man/lbl_endpoints.Rd | 5 man/lbl_glue.Rd | 5 man/lbl_intervals.Rd | 3 man/lbl_manual.Rd | 2 man/lbl_midpoints.Rd | 5 man/lbl_seq.Rd | 2 man/santoku-package.Rd | 13 src/categorize.cpp | 16 - tests/testthat/test-Date-DateTime.R | 21 + tests/testthat/test-breaks.R | 84 ++++- tests/testthat/test-chop.R | 57 +++ tests/testthat/test-labels.R | 56 ++- tests/testthat/test-nonstandard.R | 3 tests/testthat/test-tab.R | 25 + tests/testthat/test-zzz-systematic.R | 15 vignettes/santoku.Rmd | 41 ++ 60 files changed, 1017 insertions(+), 1615 deletions(-)
Title: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup
Description: Toolbox to process raw data from closed loop flux chamber (or tent)
setups into ecosystem gas fluxes usable for analysis. It goes from a
data frame of gas concentration over time (which can contain several
measurements) and a meta data file indicating which measurement was done
when, to a data frame of ecosystem gas fluxes including quality diagnostics.
Organized with one function per step, maximizing user flexibility and backwards
compatibility. Different models to estimate the fluxes from the raw data are
available: exponential as described in
Zhao et al (2018) <doi:10.1016/j.agrformet.2018.08.022>, exponential as described in
Hutchinson and Mosier (1981) <doi:10.2136/sssaj1981.03615995004500020017x>,
quadratic, and linear. Other functions include quality assessment,
plotting for visual check, calculation of fluxes based on the setup
specific parameters (chamber size, plot area, ...), gross primary production
and transpiration rate calculation, and light response curves.
Author: Joseph Gaudard [aut, cre] ,
Richard James Telford [aut]
Maintainer: Joseph Gaudard <joseph.gaudard@pm.me>
Diff between fluxible versions 1.3.0 dated 2025-08-22 and 1.3.2 dated 2025-09-11
DESCRIPTION | 10 MD5 | 56 NEWS.md | 8 R/flux_plot_exp.R | 5 R/flux_plot_flag.R | 4 R/flux_plot_pdf.R | 50 R/flux_plot_quadratic.R | 5 README.md | 1 inst/doc/data-prep.html | 4 inst/doc/fluxible.Rmd | 2 inst/doc/fluxible.html | 24 inst/doc/li7500.html | 2 inst/doc/two-gases.html | 4 man/figures/README-short-example-1.png |binary tests/testthat/_snaps/flux_plot.md | 56 tests/testthat/_snaps/flux_plot/ggssave-and-print.svg | 72 tests/testthat/_snaps/flux_plot/longpdf-and-print.svg | 126 - tests/testthat/_snaps/flux_plot/plot-as-an-object.svg | 72 tests/testthat/_snaps/flux_plot/plot-for-exp-hm-fit.svg | 126 - tests/testthat/_snaps/flux_plot/plot-for-exp-tz-fit-with-mid-missing-data.svg | 126 - tests/testthat/_snaps/flux_plot/plot-for-exp-tz-fit.svg | 126 - tests/testthat/_snaps/flux_plot/plot-for-exp-zhao18-fit-with-mid-missing-data.svg | 126 - tests/testthat/_snaps/flux_plot/plot-for-kappamax-fit.svg | 134 - tests/testthat/_snaps/flux_plot/plot-for-linear-fit.svg | 72 tests/testthat/_snaps/flux_plot/plot-for-quadratic-fit-with-mid-missing-data.svg | 114 - tests/testthat/_snaps/flux_plot/plot-with-custom-facet-id.svg | 72 tests/testthat/test-flux_plot.R | 38 vignettes/biblio_phd_zot.bib | 961 +++++++++- vignettes/fluxible.Rmd | 2 29 files changed, 1311 insertions(+), 1087 deletions(-)
Title: Analysis of Check-All-that-Apply (CATA) Data
Description: Package contains functions for analyzing check-all-that-apply (CATA) data from consumer and sensory tests. Cochran's Q test, McNemar's test, and Penalty-Lift analysis are provided; for details, see Meyners, Castura & Carr (2013) <doi:10.1016/j.foodqual.2013.06.010>. Cluster analysis can be performed using b-cluster analysis, then evaluated using various measures; for details, see Castura, Meyners, Varela & Næs (2022) <doi:10.1016/j.foodqual.2022.104564>. Consumers can also be clustered on their product-related hedonic responses; see Castura, Meyners, Pohjanheimo, Varela & Næs (2023) <doi:10.1111/joss.12860>. Permutation tests based on the L1-norm methods are provided; for details, see Chaya, Castura & Greenacre (2025) <doi:10.1016/j.foodqual.2025.105639>.
Author: J.C. Castura [aut, cre, ctb]
Maintainer: J.C. Castura <jcastura@compusense.com>
Diff between cata versions 0.1.0.27 dated 2025-02-25 and 0.1.1.2 dated 2025-09-11
DESCRIPTION | 23 MD5 | 45 - R/bcluster.R |only R/cata.R | 1111 ------------------------------------------ R/evalClusterQuality.R | 46 - R/getb.R |only R/helper.R |only R/ocov.R | 12 R/plift.R | 2 build/partial.rdb |binary man/barray.Rd | 2 man/bcluster.Rd | 21 man/bcluster.h.Rd | 4 man/bcluster.n.Rd | 17 man/cochranQ.Rd | 2 man/evaluateClusterQuality.Rd | 1 man/getb.Rd | 21 man/homogeneity.Rd | 2 man/inspect.Rd | 6 man/mad.dist.Rd | 6 man/madperm.Rd | 6 man/mcnemarQ.Rd | 2 man/plift.Rd | 2 man/toMatrix.Rd | 2 man/toWideMatrix.Rd | 2 25 files changed, 111 insertions(+), 1224 deletions(-)
Title: Spatial Centrality and Dispersion Statistics
Description: Compute centrographic statistics (central points, standard
distance, standard deviation ellipse, standard deviation box) for
observations taken at point locations in 2D or 3D. The 'sfcentral' library
was inspired in 'aspace' package but conceived to be used in a spatial
'tidyverse' context.
Author: Gabriel V. Gaona [aut, cre]
Maintainer: Gabriel V. Gaona <gabo@gavg712.com>
Diff between sfcentral versions 0.1.0 dated 2024-03-12 and 0.1.3 dated 2025-09-11
DESCRIPTION | 15 ++++++++------- MD5 | 24 ++++++++++++------------ NEWS.md | 19 +++++++++++++++++++ R/centrality.R | 4 ++-- R/sd_box.R | 6 +++--- R/sd_distance.R | 10 +++++----- R/sd_ellipse.R | 6 +++--- README.md | 6 +++++- man/centrality.Rd | 4 ++-- man/sd_box.Rd | 4 ++-- man/sd_distance.Rd | 8 ++++---- man/sd_ellipse.Rd | 6 +++--- man/sfcentral-package.Rd | 2 +- 13 files changed, 69 insertions(+), 45 deletions(-)
Title: NASCAR Race Data
Description: A collection of NASCAR race, driver, owner and manufacturer data across the three major NASCAR divisions: NASCAR Cup Series, NASCAR Xfinity Series, and NASCAR Craftsman Truck Series. The curated data begins with the 1949 season and extends through the end of the 2024 season. Explore race, season, or career performance for drivers, teams, and manufacturers throughout NASCAR's history. Data was sourced with permission from DriverAverages.com.
Author: Kyle Grealis [aut, cre] ,
Nick Triplett [ctb],
Gabriel Odom [ctb]
Maintainer: Kyle Grealis <kylegrealis@icloud.com>
Diff between nascaR.data versions 2.2.2 dated 2025-06-02 and 2.2.3 dated 2025-09-11
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ README.md | 2 +- data/cup_series.rda |binary data/truck_series.rda |binary data/xfinity_series.rda |binary man/nascaR.data-package.Rd | 2 +- 8 files changed, 18 insertions(+), 13 deletions(-)
Title: Adjust Estimates of Learning for Guessing
Description: Adjust Estimates of Learning for Guessing. The package provides
standard guessing correction, and a latent class model that leverages
informative pre-post transitions. For details of the latent class model,
see <https://gsood.com/research/papers/guess.pdf>.
Author: Gaurav Sood [aut, cre],
Ken Cor [aut]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between guess versions 0.1 dated 2016-02-08 and 0.2.0 dated 2025-09-11
guess-0.1/guess/R/alldat.R |only guess-0.1/guess/R/alldat_dk.R |only guess-0.1/guess/R/dk_sim.R |only guess-0.1/guess/R/dk_sim_params.R |only guess-0.1/guess/R/eq1dk.R |only guess-0.1/guess/R/eqn1.R |only guess-0.1/guess/R/guess_lik.R |only guess-0.1/guess/R/guess_stnderr.R |only guess-0.1/guess/R/guessdk_lik.R |only guess-0.1/guess/R/guesstimate.R |only guess-0.1/guess/R/interleave.R |only guess-0.1/guess/R/params.R |only guess-0.1/guess/R/params_dk.R |only guess-0.1/guess/R/stndcor.R |only guess-0.1/guess/data |only guess-0.1/guess/man/alldat.Rd |only guess-0.1/guess/man/dk_sim.Rd |only guess-0.1/guess/man/dk_sim_params.Rd |only guess-0.1/guess/man/eqn1dk.Rd |only guess-0.1/guess/man/fit_dk.Rd |only guess-0.1/guess/man/fit_nodk.Rd |only guess-0.1/guess/man/guess.Rd |only guess-0.1/guess/man/guess_stnderr.Rd |only guess-0.1/guess/man/guesstimate.Rd |only guess-0.1/guess/man/params.Rd |only guess-0.1/guess/man/params_dk.Rd |only guess-0.1/guess/man/stndcor.Rd |only guess-0.2.0/guess/DESCRIPTION | 22 guess-0.2.0/guess/LICENSE | 2 guess-0.2.0/guess/MD5 | 128 guess-0.2.0/guess/NAMESPACE | 29 guess-0.2.0/guess/NEWS.md |only guess-0.2.0/guess/R/fit_dk.R | 76 guess-0.2.0/guess/R/fit_nodk.R | 66 guess-0.2.0/guess/R/fit_unified.R |only guess-0.2.0/guess/R/group_adj.R |only guess-0.2.0/guess/R/guess.R | 17 guess-0.2.0/guess/R/internal-helpers.R |only guess-0.2.0/guess/R/lca_cor.R |only guess-0.2.0/guess/R/lca_se.R |only guess-0.2.0/guess/R/lca_subset.R |only guess-0.2.0/guess/R/multi_transmat.R | 119 guess-0.2.0/guess/R/nona.R | 30 guess-0.2.0/guess/R/stnd_cor.R |only guess-0.2.0/guess/R/transmat.R | 136 guess-0.2.0/guess/R/utils-constants.R |only guess-0.2.0/guess/R/utils-matrix.R |only guess-0.2.0/guess/R/utils-validation.R |only guess-0.2.0/guess/README.md | 105 guess-0.2.0/guess/build/vignette.rds |binary guess-0.2.0/guess/inst/CITATION | 28 guess-0.2.0/guess/inst/doc/using_guess.R | 205 - guess-0.2.0/guess/inst/doc/using_guess.Rmd | 363 + guess-0.2.0/guess/inst/doc/using_guess.html | 1875 +++------- guess-0.2.0/guess/man/calculate_expected_values.Rd |only guess-0.2.0/guess/man/count_transitions.Rd |only guess-0.2.0/guess/man/eq1dk.Rd |only guess-0.2.0/guess/man/eqn1.Rd | 41 guess-0.2.0/guess/man/fit_model.Rd |only guess-0.2.0/guess/man/format_transition_matrix.Rd |only guess-0.2.0/guess/man/group_adj.Rd |only guess-0.2.0/guess/man/guess-package.Rd |only guess-0.2.0/guess/man/guess_lik.Rd | 39 guess-0.2.0/guess/man/guessdk_lik.Rd | 39 guess-0.2.0/guess/man/interleave.Rd | 40 guess-0.2.0/guess/man/lca_adj.Rd |only guess-0.2.0/guess/man/lca_cor.Rd |only guess-0.2.0/guess/man/lca_se.Rd |only guess-0.2.0/guess/man/multi_transmat.Rd | 80 guess-0.2.0/guess/man/nona.Rd | 43 guess-0.2.0/guess/man/stnd_cor.Rd |only guess-0.2.0/guess/man/transmat.Rd | 75 guess-0.2.0/guess/man/validate_compatible_dataframes.Rd |only guess-0.2.0/guess/man/validate_dataframe.Rd |only guess-0.2.0/guess/man/validate_gamma.Rd |only guess-0.2.0/guess/man/validate_lucky_vector.Rd |only guess-0.2.0/guess/man/validate_priors.Rd |only guess-0.2.0/guess/man/validate_transition_values.Rd |only guess-0.2.0/guess/tests/README.html |only guess-0.2.0/guess/tests/README.md |only guess-0.2.0/guess/tests/testthat.R | 8 guess-0.2.0/guess/tests/testthat/test-comprehensive-battery.R |only guess-0.2.0/guess/tests/testthat/test-comprehensive-validation.R |only guess-0.2.0/guess/tests/testthat/test-fit-unified.R |only guess-0.2.0/guess/tests/testthat/test-integration.R |only guess-0.2.0/guess/tests/testthat/test-interleave.R | 18 guess-0.2.0/guess/tests/testthat/test-lca-cor.R |only guess-0.2.0/guess/tests/testthat/test-multi-transmat.R |only guess-0.2.0/guess/tests/testthat/test-nona.R | 15 guess-0.2.0/guess/tests/testthat/test-pkg-style.R |only guess-0.2.0/guess/tests/testthat/test-stnd-adj.R |only guess-0.2.0/guess/tests/testthat/test-stnd-cor.R | 23 guess-0.2.0/guess/tests/testthat/test-transmat.R | 38 guess-0.2.0/guess/tests/testthat/test-utils.R |only guess-0.2.0/guess/vignettes/using_guess.Rmd | 363 + 95 files changed, 1728 insertions(+), 2295 deletions(-)
Title: Clinical Trial Simulation
Description: Provides some basic routines for simulating a
clinical trial. The primary intent is to provide some tools to
generate trial simulations for trials with time to event outcomes.
Piecewise exponential failure rates and piecewise constant
enrollment rates are the underlying mechanism used to simulate
a broad range of scenarios such as those presented in
Lin et al. (2020) <doi:10.1080/19466315.2019.1697738>.
However, the basic generation of data is done using pipes to allow
maximum flexibility for users to meet different needs.
Author: Keaven Anderson [aut],
Yujie Zhao [aut, cre],
John Blischak [aut],
Nan Xiao [ctb],
Yilong Zhang [aut],
Jianxiao Yang [ctb],
Lili Ling [ctb],
Xintong Li [ctb],
Ruixue Wang [ctb],
Yi Cui [ctb],
Ping Yang [ctb],
Yalin Zhu [ctb],
Heng Zhou [ctb],
Amin Sh [...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between simtrial versions 1.0.0 dated 2025-06-11 and 1.0.1 dated 2025-09-11
DESCRIPTION | 12 MD5 | 52 NEWS.md | 11 R/milestone.R | 2 R/sim_fixed_n.R | 20 R/sim_gs_n.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/arbitrary-hazard.R | 4 inst/doc/arbitrary-hazard.html | 280 - inst/doc/discrepancy-between-simtrial-and-survival.html | 539 +- inst/doc/maxcombo.html | 3698 +++++++-------- inst/doc/modest-wlrt.html | 497 -- inst/doc/parallel.R | 62 inst/doc/parallel.html | 545 -- inst/doc/rmst.html | 985 +--- inst/doc/routines.html | 3157 ++++++------ inst/doc/sim_fixed_design_custom.html | 3902 ++++++++-------- inst/doc/sim_fixed_design_simple.html | 2252 ++++----- inst/doc/sim_gs_design_simple.R | 34 inst/doc/sim_gs_design_simple.html | 1683 +++--- inst/doc/workflow.R | 68 inst/doc/workflow.html | 69 man/milestone.Rd | 2 man/sim_fixed_n.Rd | 20 man/sim_gs_n.Rd | 4 man/simtrial-package.Rd | 2 27 files changed, 9196 insertions(+), 8708 deletions(-)
Title: A Lightweight, Modern and Flexible Logging Utility
Description: Inspired by the the 'futile.logger' R package and 'logging'
Python module, this utility provides a flexible and extensible way of
formatting and delivering log messages with low overhead.
Author: Gergely Daroczi [aut, cre] ,
Hadley Wickham [aut] ,
Spare Cores [fnd],
System1 [fnd]
Maintainer: Gergely Daroczi <daroczig@rapporter.net>
Diff between logger versions 0.4.0 dated 2024-10-22 and 0.4.1 dated 2025-09-11
DESCRIPTION | 23 ++++--- MD5 | 114 +++++++++++++++++++------------------- NAMESPACE | 6 ++ NEWS.md | 18 +++++- R/appenders.R | 12 ++-- R/formatters.R | 58 ++++++++++++++----- R/helpers.R | 103 +++++++++++++++++++++++++++++++++- R/hooks.R | 35 ++++++++--- R/layouts.R | 112 ++++++++++++++++++++++++++++++------- R/logger-meta.R | 6 +- R/logger.R | 75 ++++++++++++++++++------- R/utils.R | 24 ++++++++ R/zzz.R | 5 + build/vignette.rds |binary inst/doc/Intro.html | 43 +++++++------- inst/doc/anatomy.html | 84 +++++++++++++++------------- inst/doc/customize_logger.Rmd | 2 inst/doc/customize_logger.html | 85 ++++++++++++++-------------- inst/doc/migration.html | 84 ++++++++++++++-------------- inst/doc/performance.html | 5 + inst/doc/r_packages.html | 5 + man/appender_pushbullet.Rd | 4 - man/formatter_cli.Rd |only man/formatter_glue.Rd | 7 +- man/formatter_glue_or_sprintf.Rd | 13 ++-- man/formatter_glue_safe.Rd | 7 +- man/formatter_json.Rd | 1 man/formatter_logging.Rd | 3 - man/formatter_pander.Rd | 1 man/formatter_paste.Rd | 1 man/formatter_sprintf.Rd | 9 +-- man/get_logger_meta_variables.Rd | 9 ++- man/layout_blank.Rd | 7 ++ man/layout_gha.Rd |only man/layout_glue.Rd | 9 ++- man/layout_glue_colors.Rd | 9 ++- man/layout_glue_generator.Rd | 5 + man/layout_json.Rd | 1 man/layout_json_parser.Rd | 11 +++ man/layout_logging.Rd | 7 ++ man/layout_simple.Rd | 7 ++ man/layout_syslognet.Rd | 6 +- man/log_chunk_time.Rd |only man/log_elapsed.Rd |only man/log_errors.Rd | 13 +++- man/log_level.Rd | 27 ++++++--- man/log_messages.Rd | 5 - man/log_separator.Rd | 6 +- man/log_tictoc.Rd | 2 man/log_warnings.Rd | 5 - man/logger-package.Rd | 1 tests/testthat/_snaps/hooks.md | 8 ++ tests/testthat/helper.R | 10 +++ tests/testthat/test-formatters.R | 23 +++++++ tests/testthat/test-helpers.R | 40 +++++++++++++ tests/testthat/test-hooks.R | 3 + tests/testthat/test-layouts.R | 9 +++ tests/testthat/test-logger-meta.R | 3 + tests/testthat/test-utils.R | 1 vignettes/customize_logger.Rmd | 2 60 files changed, 826 insertions(+), 348 deletions(-)
Title: Group Sequential Design with Non-Constant Effect
Description: The goal of 'gsDesign2' is to enable fixed or group sequential
design under non-proportional hazards. To enable highly flexible enrollment,
time-to-event and time-to-dropout assumptions, 'gsDesign2' offers piecewise
constant enrollment, failure rates, and dropout rates for a stratified
population. This package includes three methods for designs:
average hazard ratio, weighted logrank tests in Yung and Liu (2019)
<doi:10.1111/biom.13196>, and MaxCombo tests.
Substantial flexibility on top of what is in the 'gsDesign' package
is intended for selecting boundaries.
Author: Keaven Anderson [aut],
Yujie Zhao [aut, cre],
Yilong Zhang [aut],
John Blischak [aut],
Yihui Xie [aut],
Nan Xiao [aut],
Jianxiao Yang [aut],
Amin Shirazi [ctb],
Ruixue Wang [ctb],
Yi Cui [ctb],
Ping Yang [ctb],
Xin Tong Li [ctb],
Chenxiang Li [ctb],
[...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between gsDesign2 versions 1.1.5 dated 2025-06-27 and 1.1.6 dated 2025-09-11
gsDesign2-1.1.5/gsDesign2/man/gs_design_npe.Rd |only gsDesign2-1.1.5/gsDesign2/man/gs_power_npe.Rd |only gsDesign2-1.1.5/gsDesign2/tests/testthat/test-independent_test_gs_design_wlr.R |only gsDesign2-1.1.5/gsDesign2/tests/testthat/test-independent_test_gs_info_wlr.R |only gsDesign2-1.1.5/gsDesign2/tests/testthat/test-independent_test_gs_power_wlr.R |only gsDesign2-1.1.5/gsDesign2/tests/testthat/test-independent_test_s2pwe.R |only gsDesign2-1.1.5/gsDesign2/tests/testthat/test-independent_test_wlr_weight.R |only gsDesign2-1.1.6/gsDesign2/DESCRIPTION | 14 gsDesign2-1.1.6/gsDesign2/MD5 | 215 gsDesign2-1.1.6/gsDesign2/NAMESPACE | 1 gsDesign2-1.1.6/gsDesign2/NEWS.md | 11 gsDesign2-1.1.6/gsDesign2/R/as_gt.R | 71 gsDesign2-1.1.6/gsDesign2/R/as_rtf.R | 82 gsDesign2-1.1.6/gsDesign2/R/expected_time.R | 2 gsDesign2-1.1.6/gsDesign2/R/fixed_design_ahr.R | 20 gsDesign2-1.1.6/gsDesign2/R/fixed_design_fh.R | 21 gsDesign2-1.1.6/gsDesign2/R/fixed_design_lf.R | 51 gsDesign2-1.1.6/gsDesign2/R/fixed_design_maxcombo.R | 11 gsDesign2-1.1.6/gsDesign2/R/fixed_design_mb.R | 20 gsDesign2-1.1.6/gsDesign2/R/fixed_design_milestone.R | 9 gsDesign2-1.1.6/gsDesign2/R/fixed_design_rd.R | 24 gsDesign2-1.1.6/gsDesign2/R/fixed_design_rmst.R | 9 gsDesign2-1.1.6/gsDesign2/R/gsDesign2-package.R | 2 gsDesign2-1.1.6/gsDesign2/R/gs_cp_npe.R | 1 gsDesign2-1.1.6/gsDesign2/R/gs_design_ahr.R | 35 gsDesign2-1.1.6/gsDesign2/R/gs_design_combo.R | 61 gsDesign2-1.1.6/gsDesign2/R/gs_design_npe.R | 106 gsDesign2-1.1.6/gsDesign2/R/gs_design_rd.R | 24 gsDesign2-1.1.6/gsDesign2/R/gs_design_wlr.R | 45 gsDesign2-1.1.6/gsDesign2/R/gs_info_ahr.R | 2 gsDesign2-1.1.6/gsDesign2/R/gs_info_rd.R | 48 gsDesign2-1.1.6/gsDesign2/R/gs_power_ahr.R | 37 gsDesign2-1.1.6/gsDesign2/R/gs_power_combo.R | 55 gsDesign2-1.1.6/gsDesign2/R/gs_power_npe.R | 120 gsDesign2-1.1.6/gsDesign2/R/gs_power_rd.R | 30 gsDesign2-1.1.6/gsDesign2/R/gs_power_wlr.R | 60 gsDesign2-1.1.6/gsDesign2/R/gs_update_ahr.R | 15 gsDesign2-1.1.6/gsDesign2/R/rmst.R | 2 gsDesign2-1.1.6/gsDesign2/R/summary.R | 36 gsDesign2-1.1.6/gsDesign2/R/text_summary.R | 30 gsDesign2-1.1.6/gsDesign2/R/to_integer.R | 58 gsDesign2-1.1.6/gsDesign2/R/utility_combo.R | 2 gsDesign2-1.1.6/gsDesign2/R/utility_tidy_tbl.R | 13 gsDesign2-1.1.6/gsDesign2/R/utility_wlr.R | 38 gsDesign2-1.1.6/gsDesign2/build/partial.rdb |binary gsDesign2-1.1.6/gsDesign2/build/vignette.rds |binary gsDesign2-1.1.6/gsDesign2/inst/doc/gsDesign2.R | 24 gsDesign2-1.1.6/gsDesign2/inst/doc/gsDesign2.Rmd | 24 gsDesign2-1.1.6/gsDesign2/inst/doc/gsDesign2.html | 6158 +++++----- gsDesign2-1.1.6/gsDesign2/inst/example_run_time/timer.Rmd | 20 gsDesign2-1.1.6/gsDesign2/man/as_gt.Rd | 59 gsDesign2-1.1.6/gsDesign2/man/as_rtf.Rd | 64 gsDesign2-1.1.6/gsDesign2/man/fixed_design.Rd | 59 gsDesign2-1.1.6/gsDesign2/man/gsDesign2-package.Rd | 2 gsDesign2-1.1.6/gsDesign2/man/gs_cp_npe.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_design_ahr.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_design_combo.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_design_wlr.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_power_ahr.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_power_combo.Rd | 1 gsDesign2-1.1.6/gsDesign2/man/gs_power_design_npe.Rd |only gsDesign2-1.1.6/gsDesign2/man/gs_power_wlr.Rd | 8 gsDesign2-1.1.6/gsDesign2/man/gs_update_ahr.Rd | 3 gsDesign2-1.1.6/gsDesign2/man/summary.Rd | 26 gsDesign2-1.1.6/gsDesign2/man/text_summary.Rd | 18 gsDesign2-1.1.6/gsDesign2/man/to_integer.Rd | 27 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_gt.md | 18 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/fixed_design_ahr.rtf | 44 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/fixed_design_ahr_footnote.rtf | 44 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/fixed_design_ahr_title.rtf | 44 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_design_ahr.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_design_rd.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_design_wlr.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_cols_display.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_efficacy_bound.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_footnote.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_futility_bound.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_spanner.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/_snaps/independent_as_rtf/gs_power_wlr_title.rtf | 16 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-AHR_.R | 44 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-eEvents_.R | 1 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gridpts_h1_hupdate.R | 10 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gs_design_ahr_.R | 14 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gs_design_npe_.R | 4 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gs_info_ahr_.R | 2 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gs_power_ahr_.R | 8 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old-version-gs_power_npe_.R | 14 gsDesign2-1.1.6/gsDesign2/tests/testthat/helper-old_version-eEvents_df_.R | 24 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-ahr.R | 14 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-expected_event.R | 4 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-expected_time.R | 12 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_design_npe.R | 118 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_design_wlr.R | 90 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_info_wlr.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_power_ahr.R | 2 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_power_npe.R | 86 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-gs_power_wlr.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-developer-to_integer.R | 2 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-expected_event.R | 2 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-fixed_design.R | 12 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_design_ahr.R | 36 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_design_combo.R | 4 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_design_npe.R | 68 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_info_ahr.R | 6 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_power_npe.R | 6 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-gs_update_ahr.R | 6 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-hupdate.R | 2 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent-to_integer.R | 4 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_as_gt.R | 60 gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_gs_design_wlr.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_gs_info_wlr.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_gs_power_wlr.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_s2pwe.R |only gsDesign2-1.1.6/gsDesign2/tests/testthat/test-independent_wlr_weight.R |only gsDesign2-1.1.6/gsDesign2/vignettes/gsDesign2.Rmd | 24 116 files changed, 4616 insertions(+), 4252 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph] ,
Chuck Powell [ctb]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.13.1 dated 2025-05-09 and 0.13.2 dated 2025-09-11
DESCRIPTION | 22 MD5 | 276 NEWS.md | 9 R/extract-stats.R | 2 R/ggbetweenstats.R | 2 R/ggcoefstats.R | 9 R/ggcorrmat.R | 6 R/ggdotplotstats.R | 5 R/ggscatterstats.R | 4 R/ggwithinstats.R | 6 inst/doc/ggstatsplot.html | 2 man/dot-grouped_list.Rd | 2 man/extract_stats.Rd | 2 man/figures/README-ggbarstats1-1.png |binary man/figures/README-ggbarstats2-1.png |binary man/figures/README-ggbetweenstats1-1.png |binary man/figures/README-ggbetweenstats2-1.png |binary man/figures/README-ggcoefstats1-1.png |binary man/figures/README-ggcorrmat1-1.png |binary man/figures/README-ggcorrmat2-1.png |binary man/figures/README-ggdotplotstats1-1.png |binary man/figures/README-ggdotplotstats2-1.png |binary man/figures/README-gghistostats1-1.png |binary man/figures/README-ggpiestats1-1.png |binary man/figures/README-ggpiestats2-1.png |binary man/figures/README-ggscatterstats1-1.png |binary man/figures/README-ggscatterstats2-1.png |binary man/figures/README-ggwithinstats1-1.png |binary man/figures/README-ggwithinstats2-1.png |binary man/ggbarstats.Rd | 2 man/ggbetweenstats.Rd | 4 man/ggcoefstats.Rd | 6 man/ggdotplotstats.Rd | 6 man/gghistostats.Rd | 2 man/ggpiestats.Rd | 2 man/ggwithinstats.Rd | 8 man/grouped_ggbarstats.Rd | 2 man/grouped_ggbetweenstats.Rd | 2 man/grouped_ggdotplotstats.Rd | 4 man/grouped_gghistostats.Rd | 2 man/grouped_ggpiestats.Rd | 2 man/grouped_ggscatterstats.Rd | 2 man/grouped_ggwithinstats.Rd | 2 tests/testthat/_snaps/ggbarstats/changing-aesthetics-works.svg | 24 tests/testthat/_snaps/ggbarstats/checking-count-labels.svg | 42 tests/testthat/_snaps/ggbarstats/checking-paired-two-way-table-with-na.svg | 22 tests/testthat/_snaps/ggbarstats/checking-paired-two-way-table-without-na.svg | 28 tests/testthat/_snaps/ggbarstats/checking-percentage-and-count-labels.svg | 54 tests/testthat/_snaps/ggbarstats/checking-percentage-labels.svg | 42 tests/testthat/_snaps/ggbarstats/checking-unpaired-two-way-table-with-na.svg | 108 tests/testthat/_snaps/ggbarstats/checking-unpaired-two-way-table-without-na.svg | 28 tests/testthat/_snaps/ggbarstats/common-legend-when-levels-are-dropped.svg | 42 tests/testthat/_snaps/ggbarstats/grouped-ggbarstats-with-two-way-table.svg | 46 tests/testthat/_snaps/ggbarstats/label-repelling-works.svg | 56 tests/testthat/_snaps/ggbarstats/prop-test-fails-with-dropped-levels.svg | 20 tests/testthat/_snaps/ggbarstats/works-with-dropped-levels.svg | 24 tests/testthat/_snaps/ggbetweenstats/default-plot-as-expected.svg | 342 - tests/testthat/_snaps/ggbetweenstats/mean-shown-with-scarce-data.svg | 36 tests/testthat/_snaps/ggbetweenstats/modification-with-ggplot2-works-as-expected.svg | 88 tests/testthat/_snaps/ggbetweenstats/plot-with-outliers-as-expected.svg | 964 +-- tests/testthat/_snaps/ggbetweenstats/specific-geoms-removed.svg | 88 tests/testthat/_snaps/ggcoefstats/chi2-statistic.svg | 16 tests/testthat/_snaps/ggcoefstats/cis-missing.svg | 8 tests/testthat/_snaps/ggcoefstats/f-statistic-with-omega.svg | 24 tests/testthat/_snaps/ggcoefstats/f-statistic.svg | 24 tests/testthat/_snaps/ggcoefstats/meta-analysis-works.svg | 10 tests/testthat/_snaps/ggcoefstats/plot-modifications.svg | 24 tests/testthat/_snaps/ggcoefstats/sorting-works.svg | 24 tests/testthat/_snaps/ggcoefstats/t-statistic.svg | 32 tests/testthat/_snaps/ggcoefstats/z-statistic.svg | 24 tests/testthat/_snaps/ggcorrmat/applying-ggplot2-function-works.svg | 14 tests/testthat/_snaps/ggcorrmat/changing-aesthetic-defaults.svg | 8 tests/testthat/_snaps/ggcorrmat/non-parametric-correlation-with-nas.svg | 34 tests/testthat/_snaps/ggcorrmat/parametric-correlation-without-nas.svg | 156 tests/testthat/_snaps/ggcorrmat/with-nas.svg | 104 tests/testthat/_snaps/ggcorrmat/without-nas.svg | 26 tests/testthat/_snaps/ggdotplotstats/defaults-work-as-expected.svg | 318 tests/testthat/_snaps/ggdotplotstats/further-modification-with-ggplot-works.svg | 248 tests/testthat/_snaps/ggdotplotstats/modification-with-ggplot2.svg | 10 tests/testthat/_snaps/ggdotplotstats/parametric-without-na.svg | 32 tests/testthat/_snaps/ggdotplotstats/robust-with-na.svg | 40 tests/testthat/_snaps/gghistostats/aesthetic-modifications-work.svg | 4 tests/testthat/_snaps/gghistostats/defaults-as-expected.svg | 32 tests/testthat/_snaps/gghistostats/modification-with-ggplot2-works.svg | 422 - tests/testthat/_snaps/gghistostats/parametric-without-na.svg | 34 tests/testthat/_snaps/gghistostats/plot-normal-curve.svg | 38 tests/testthat/_snaps/gghistostats/robust-with-na.svg | 20 tests/testthat/_snaps/ggpiestats/changing-aesthetics-works.svg | 122 tests/testthat/_snaps/ggpiestats/checking-count-labels.svg | 48 tests/testthat/_snaps/ggpiestats/checking-one-way-table-with-na.svg | 136 tests/testthat/_snaps/ggpiestats/checking-one-way-table-without-na.svg | 124 tests/testthat/_snaps/ggpiestats/checking-paired-two-way-table-with-na.svg | 246 tests/testthat/_snaps/ggpiestats/checking-paired-two-way-table-without-na.svg | 252 tests/testthat/_snaps/ggpiestats/checking-percentage-and-count-labels.svg | 54 tests/testthat/_snaps/ggpiestats/checking-percentage-labels.svg | 48 tests/testthat/_snaps/ggpiestats/checking-unpaired-two-way-table-with-na.svg | 460 - tests/testthat/_snaps/ggpiestats/checking-unpaired-two-way-table-without-na.svg | 332 - tests/testthat/_snaps/ggpiestats/common-legend-when-levels-are-dropped.svg | 130 tests/testthat/_snaps/ggpiestats/empty-groups-in-factors-not-dropped.svg | 100 tests/testthat/_snaps/ggpiestats/grouped-ggpiestats-with-one-way-table.svg | 248 tests/testthat/_snaps/ggpiestats/grouped-ggpiestats-with-two-way-table.svg | 308 tests/testthat/_snaps/ggpiestats/label-repelling-works.svg | 92 tests/testthat/_snaps/ggpiestats/prop-test-fails-with-dropped-levels.svg | 90 tests/testthat/_snaps/ggpiestats/works-with-dropped-levels.svg | 48 tests/testthat/_snaps/ggscatterstats/aesthetic-modifications-work.svg | 1686 ++--- tests/testthat/_snaps/ggscatterstats/changing-scales-and-aesthetics.svg | 170 tests/testthat/_snaps/ggscatterstats/defaults-work-as-expected.svg | 1013 +-- tests/testthat/_snaps/ggscatterstats/label-variable-and-expression.svg | 224 tests/testthat/_snaps/ggscatterstats/no-label-variable-but-expression.svg | 206 tests/testthat/_snaps/ggscatterstats/parametric-correlation-without-nas.svg | 349 - tests/testthat/_snaps/ggscatterstats/robust-correlation-with-nas.svg | 312 tests/testthat/_snaps/ggwithinstats/centrality-path-can-be-turned-off.svg | 1248 +-- tests/testthat/_snaps/ggwithinstats/defaults-plots-more-than-two-groups.svg | 168 tests/testthat/_snaps/ggwithinstats/defaults-plots-two-groups.svg | 186 tests/testthat/_snaps/ggwithinstats/ggplot2-commands-work.svg | 168 tests/testthat/_snaps/ggwithinstats/grouped-plots-default.svg | 582 - tests/testthat/_snaps/pairwise-ggsignif/adding-caption-works.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/between-bayes.svg | 100 tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-all.svg | 3188 ++++----- tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-only-non-significant.svg | 3190 +++++----- tests/testthat/_snaps/pairwise-ggsignif/between-non-parametric-only-significant.svg | 3190 +++++----- tests/testthat/_snaps/pairwise-ggsignif/between-parametric-all.svg | 150 tests/testthat/_snaps/pairwise-ggsignif/between-parametric-only-non-significant.svg | 150 tests/testthat/_snaps/pairwise-ggsignif/between-parametric-only-significant.svg | 150 tests/testthat/_snaps/pairwise-ggsignif/between-robust-all.svg | 160 tests/testthat/_snaps/pairwise-ggsignif/between-robust-only-non-significant.svg | 160 tests/testthat/_snaps/pairwise-ggsignif/between-robust-only-significant.svg | 160 tests/testthat/_snaps/pairwise-ggsignif/within-bayes.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-all.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-only-non-significant.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-non-parametric-only-significant.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-parametric-all.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-parametric-only-non-significant.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-parametric-only-significant.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-robust-all.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-robust-only-non-significant.svg | 752 +- tests/testthat/_snaps/pairwise-ggsignif/within-robust-only-significant.svg | 752 +- tests/testthat/test-extract-stats.R | 27 tests/testthat/test-gghistostats.R | 2 139 files changed, 16126 insertions(+), 16096 deletions(-)
Title: Create Interactive Graphs with 'Echarts JavaScript' Version 5
Description: Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes
36 chart types, themes, 'Shiny' proxies and animations.
Author: John Coene [aut, cph],
David Munoz Tord [cre, ctb] ,
Wei Su [ctb],
Helgasoft [ctb],
Xianying Tan [ctb] ,
Robin Cura [ctb] ,
Mathida Chuk [ctb],
Robert Koetsier [ctb] ,
Jelle Geertsma [ctb],
Teofil Nakov [ctb]
Maintainer: David Munoz Tord <david.munoztord@mailbox.org>
Diff between echarts4r versions 0.4.5 dated 2023-06-16 and 0.4.6 dated 2025-09-11
DESCRIPTION | 25 MD5 | 79 NEWS.md | 18 R/add.R | 1236 +++++++-------- R/add_.R | 4 R/echarts4r.R | 24 R/grid.R | 8 R/group2series.R | 6 R/helpers.R | 16 R/nesting.R | 18 R/opts.R | 17 R/utils.R | 159 + README.md | 4 inst/htmlwidgets/echarts4rInteractive.js |only inst/htmlwidgets/echarts4rInteractive.yaml |only inst/htmlwidgets/lib/echarts-4.8.0/echarts-en.min.js | 4 inst/htmlwidgets/lib/echarts-4.8.0/themes/infographic.js | 10 inst/htmlwidgets/lib/echarts-4.8.0/themes/macarons.js | 8 inst/htmlwidgets/lib/echarts-4.8.0/themes/macarons2.js | 119 - inst/htmlwidgets/lib/echarts-4.8.0/themes/package.json |only inst/htmlwidgets/lib/echarts-4.8.0/themes/shine.js | 4 inst/htmlwidgets/lib/echarts-4.8.0/themes/tech-blue.js | 8 man/angle_axis.Rd | 4 man/connections.Rd | 2 man/e_bar.Rd | 4 man/e_brush.Rd | 2 man/e_gauge.Rd | 14 man/e_grid.Rd | 2 man/e_pictorial.Rd | 4 man/e_pie.Rd | 2 man/e_polar.Rd | 2 man/e_step.Rd | 2 man/e_text_style.Rd | 3 man/e_tree.Rd | 6 man/echarts4r-shiny.Rd | 13 man/echartsNJSON.Rd | 6 man/graph.Rd | 35 man/histogram.Rd | 4 man/init.Rd | 17 man/nesting.Rd | 4 man/radius_axis.Rd | 2 tests/testthat/test-chart_types.R | 15 42 files changed, 1028 insertions(+), 882 deletions(-)
Title: Interface for 'XGBoost' on 'Apache Spark'
Description: A 'sparklyr' <https://spark.posit.co/> extension that provides an R
interface for 'XGBoost' <https://github.com/dmlc/xgboost> on 'Apache Spark'.
'XGBoost' is an optimized distributed gradient boosting library.
Author: Kevin Kuo [aut] ,
Yitao Li [aut] ,
Edgar Ruiz [aut, cre]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between sparkxgb versions 0.2.0 dated 2024-04-30 and 0.2.1 dated 2025-09-11
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 7 +++++++ man/xgboost_classifier.Rd | 6 +++--- man/xgboost_regressor.Rd | 8 ++++---- 5 files changed, 24 insertions(+), 17 deletions(-)
Title: Semiparametric Likelihood Estimation with Errors in Variables
Description: Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Author: Sarah Lotspeich [aut],
Ran Tao [aut, cre],
Joey Sherrill [prg],
Jiangmei Xiong [ctb]
Maintainer: Ran Tao <r.tao@vanderbilt.edu>
Diff between sleev versions 1.1.4 dated 2025-06-27 and 1.1.5 dated 2025-09-11
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/logistic2ph.R | 8 ++++---- README.md | 12 ++++++++++++ build/vignette.rds |binary inst/doc/sleev_vignette_file.pdf |binary src/Makevars | 2 +- src/Makevars.win | 2 +- 8 files changed, 28 insertions(+), 16 deletions(-)
Title: Access to Spanish Household Income Distribution Atlas Data
Description: Provides access to granular socioeconomic indicators from the
Spanish Statistical Office (INE) Household Income Distribution Atlas.
The package downloads and processes data from a companion 'GitHub'
repository (<https://github.com/pablogguz/ineAtlas.data/>) which
contains processed versions of the official INE Atlas data. Functions
are provided to fetch data at multiple geographic levels
(municipalities, districts, and census tracts), including income
indicators, demographic characteristics, and inequality metrics. The
data repository is updated every year when new releases are published
by INE.
Author: Pablo Garcia Guzman [aut, cre, cph]
Maintainer: Pablo Garcia Guzman <garciagp@ebrd.com>
Diff between ineAtlas versions 0.1.3 dated 2024-11-30 and 0.1.4 dated 2025-09-11
DESCRIPTION | 26 +++++++++++++------------- LICENSE | 2 +- MD5 | 23 ++++++++++++----------- NEWS.md | 4 ++++ README.md | 1 - inst/WORDLIST |only inst/doc/ineAtlas-income-voting.R | 1 - inst/doc/ineAtlas-income-voting.Rmd | 1 - inst/doc/ineAtlas-income-voting.html | 13 ++++++------- inst/doc/mapping-with-ineatlas.Rmd | 4 ++-- inst/doc/mapping-with-ineatlas.html | 30 +++++++++++++++--------------- vignettes/ineAtlas-income-voting.Rmd | 1 - vignettes/mapping-with-ineatlas.Rmd | 4 ++-- 13 files changed, 55 insertions(+), 55 deletions(-)
Title: ROBust INference for Covariate Adjustment in Randomized Clinical
Trials
Description: Performs robust estimation and inference when using covariate adjustment
and/or covariate-adaptive randomization in randomized controlled trials.
This package is trimmed to reduce the dependencies and validated to be used across industry.
See "FDA's final guidance on covariate adjustment"<https://www.regulations.gov/docket/FDA-2019-D-0934>, Tsiatis (2008) <doi:10.1002/sim.3113>,
Bugni et al. (2018) <doi:10.1080/01621459.2017.1375934>, Ye, Shao, Yi, and Zhao (2023)<doi:10.1080/01621459.2022.2049278>,
Ye, Shao, and Yi (2022)<doi:10.1093/biomet/asab015>, Rosenblum and van der Laan (2010)<doi:10.2202/1557-4679.1138>,
Wang et al. (2021)<doi:10.1080/01621459.2021.1981338>, Ye, Bannick, Yi, and Shao (2023)<doi:10.1080/24754269.2023.2205802>,
and Bannick, Shao, Liu, Du, Yi, and Ye (2024)<doi:10.48550/arXiv.2306.10213>.
Author: Liming Li [aut, cre] ,
Marlena Bannick [aut] ,
Daniel Sabanes Bove [aut] ,
Dong Xi [aut],
Ting Ye [aut],
Yanyao Yi [aut],
Gregory Chen [ctb],
Gilead Sciences, Inc. [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
Merck Sharp & Dohme, Inc. [cph, fnd],
[...truncated...]
Maintainer: Liming Li <liming.li1@astrazeneca.com>
Diff between RobinCar2 versions 0.2.0 dated 2025-09-09 and 0.2.1 dated 2025-09-11
DESCRIPTION | 10 - MD5 | 36 ++--- NEWS.md | 14 ++ R/survival.R | 35 +++-- R/survival_cov_adj.R | 38 +++-- R/survival_score.R | 205 ++++++++++++++++++-------------- inst/WORDLIST | 1 inst/doc/intro.html | 16 +- man/RobinCar2-package.Rd | 1 man/derived_outcome_vals.Rd | 2 man/h_log_hr_est_via_score.Rd | 5 man/robin_surv.Rd | 11 - man/survival_score_functions.Rd | 17 +- tests/testthat/_snaps/survival.md | 5 tests/testthat/_snaps/survival_score.md | 12 + tests/testthat/test-survival.R | 138 +++++++++++++++++++++ tests/testthat/test-survival_cov_adj.R | 52 ++++++++ tests/testthat/test-survival_score.R | 104 ++++++++++++++++ tests/testthat/test-utils.R | 21 +++ 19 files changed, 567 insertions(+), 156 deletions(-)
Title: Semi-Parametric Estimators of Truncated Regression Models
Description: Estimators for semi-parametric linear regression models with truncated response variables (fixed truncation point). The estimators implemented are the Symmetrically Trimmed Least Squares (STLS) estimator introduced by Powell (1986) <doi:10.2307/1914308>, the Quadratic Mode (QME) estimator introduced by Lee (1993) <doi:10.1016/0304-4076(93)90056-B>, and the Left Truncated (LT) estimator introduced by Karlsson (2006) <doi:10.1007/s00184-005-0023-x>.
Author: Anita Lindmark [aut, cre, cph],
Maria Karlsson [aut]
Maintainer: Anita Lindmark <anita.lindmark@umu.se>
This is a re-admission after prior archival of version 1.2.2 dated 2014-05-05
Diff between truncSP versions 1.2.2 dated 2014-05-05 and 1.2.4 dated 2025-09-11
truncSP-1.2.2/truncSP/R/ltbootstrap.R |only truncSP-1.2.2/truncSP/R/ltclasses.r |only truncSP-1.2.2/truncSP/R/qmebootstrap.R |only truncSP-1.2.2/truncSP/R/qmeclasses.r |only truncSP-1.2.2/truncSP/R/stlsbootstrap.R |only truncSP-1.2.2/truncSP/R/stlsclasses.r |only truncSP-1.2.4/truncSP/DESCRIPTION | 40 +++- truncSP-1.2.4/truncSP/MD5 | 106 +++++++---- truncSP-1.2.4/truncSP/NAMESPACE | 76 +++++-- truncSP-1.2.4/truncSP/NEWS |only truncSP-1.2.4/truncSP/R/PM10-data.R |only truncSP-1.2.4/truncSP/R/PM10trunc-data.R |only truncSP-1.2.4/truncSP/R/bootconfint.R |only truncSP-1.2.4/truncSP/R/covar.boot.R |only truncSP-1.2.4/truncSP/R/funcLT.R |only truncSP-1.2.4/truncSP/R/funcQME.R |only truncSP-1.2.4/truncSP/R/funcSTLS.R |only truncSP-1.2.4/truncSP/R/funcval.LT.R |only truncSP-1.2.4/truncSP/R/funcval.QME.R |only truncSP-1.2.4/truncSP/R/funcval.STLS.R |only truncSP-1.2.4/truncSP/R/lt-class.R |only truncSP-1.2.4/truncSP/R/lt.R | 218 ++++++++++++++-------- truncSP-1.2.4/truncSP/R/lt.fit.R |only truncSP-1.2.4/truncSP/R/ltmethods.r | 211 +++++++++++++--------- truncSP-1.2.4/truncSP/R/mlcoef.R |only truncSP-1.2.4/truncSP/R/qme-class.R |only truncSP-1.2.4/truncSP/R/qme.R | 215 +++++++++++++--------- truncSP-1.2.4/truncSP/R/qme.fit.R |only truncSP-1.2.4/truncSP/R/qmemethods.r | 208 +++++++++++++-------- truncSP-1.2.4/truncSP/R/stls-class.R |only truncSP-1.2.4/truncSP/R/stls.R | 186 ++++++++++++------- truncSP-1.2.4/truncSP/R/stls.fit.R |only truncSP-1.2.4/truncSP/R/stlsmethods.r | 199 ++++++++++++-------- truncSP-1.2.4/truncSP/R/summary.lt-class.R |only truncSP-1.2.4/truncSP/R/summary.qme-class.R |only truncSP-1.2.4/truncSP/R/summary.stls-class.R |only truncSP-1.2.4/truncSP/R/truncSP-package.R |only truncSP-1.2.4/truncSP/inst/CITATION | 30 +-- truncSP-1.2.4/truncSP/man/PM10.Rd | 50 ++--- truncSP-1.2.4/truncSP/man/PM10trunc.Rd | 39 ++-- truncSP-1.2.4/truncSP/man/bootconfint.Rd |only truncSP-1.2.4/truncSP/man/coef.lt.Rd |only truncSP-1.2.4/truncSP/man/coef.qme.Rd |only truncSP-1.2.4/truncSP/man/coef.stls.Rd |only truncSP-1.2.4/truncSP/man/covar.boot.Rd |only truncSP-1.2.4/truncSP/man/fitted.lt.Rd |only truncSP-1.2.4/truncSP/man/fitted.qme.Rd |only truncSP-1.2.4/truncSP/man/fitted.stls.Rd |only truncSP-1.2.4/truncSP/man/funcLT.Rd |only truncSP-1.2.4/truncSP/man/funcQME.Rd |only truncSP-1.2.4/truncSP/man/funcSTLS.Rd |only truncSP-1.2.4/truncSP/man/funcval.LT.Rd |only truncSP-1.2.4/truncSP/man/funcval.QME.Rd |only truncSP-1.2.4/truncSP/man/funcval.STLS.Rd |only truncSP-1.2.4/truncSP/man/lt-class.Rd | 73 +++---- truncSP-1.2.4/truncSP/man/lt.Rd | 230 +++++++++++------------- truncSP-1.2.4/truncSP/man/lt.fit.Rd | 87 ++++----- truncSP-1.2.4/truncSP/man/mlcoef.Rd |only truncSP-1.2.4/truncSP/man/print.lt.Rd |only truncSP-1.2.4/truncSP/man/print.qme.Rd |only truncSP-1.2.4/truncSP/man/print.stls.Rd |only truncSP-1.2.4/truncSP/man/print.summary.lt.Rd |only truncSP-1.2.4/truncSP/man/print.summary.qme.Rd |only truncSP-1.2.4/truncSP/man/print.summary.stls.Rd |only truncSP-1.2.4/truncSP/man/qme-class.Rd | 76 +++---- truncSP-1.2.4/truncSP/man/qme.Rd | 226 +++++++++++------------ truncSP-1.2.4/truncSP/man/qme.fit.Rd | 83 +++----- truncSP-1.2.4/truncSP/man/residuals.lt.Rd |only truncSP-1.2.4/truncSP/man/residuals.qme.Rd |only truncSP-1.2.4/truncSP/man/residuals.stls.Rd |only truncSP-1.2.4/truncSP/man/stls-class.Rd | 73 +++---- truncSP-1.2.4/truncSP/man/stls.Rd | 200 ++++++++++---------- truncSP-1.2.4/truncSP/man/stls.fit.Rd | 83 +++----- truncSP-1.2.4/truncSP/man/summary.lt-class.Rd | 85 ++++---- truncSP-1.2.4/truncSP/man/summary.lt.Rd |only truncSP-1.2.4/truncSP/man/summary.qme-class.Rd | 83 ++++---- truncSP-1.2.4/truncSP/man/summary.qme.Rd |only truncSP-1.2.4/truncSP/man/summary.stls-class.Rd | 82 +++----- truncSP-1.2.4/truncSP/man/summary.stls.Rd |only truncSP-1.2.4/truncSP/man/truncSP-package.Rd | 95 ++------- truncSP-1.2.4/truncSP/man/vcov.lt.Rd |only truncSP-1.2.4/truncSP/man/vcov.qme.Rd |only truncSP-1.2.4/truncSP/man/vcov.stls.Rd |only 83 files changed, 1653 insertions(+), 1401 deletions(-)
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.70.5 dated 2024-08-26 and 1.70.7 dated 2025-09-11
DESCRIPTION | 22 +- MD5 | 284 +++++++++++++++++------------------ NAMESPACE | 2 NEWS.md | 19 ++ R/ILnumber.R | 3 R/Ibased.R | 39 ++++ R/J_stat.R | 16 + R/RcppExports.R | 16 - R/average_leaf_depth.R | 3 R/avgLadder.R | 3 R/avg_vertex_depth.R | 6 R/b1.R | 3 R/b2.R | 5 R/beta.R | 17 +- R/blum.R | 37 ++++ R/branching_times.R | 5 R/calc_all_stats.R | 43 ++--- R/calc_brts_stats.R | 22 +- R/calc_topology_stats.R | 4 R/cherries.R | 3 R/colless.R | 20 +- R/crown_age.R | 25 ++- R/diameter.R | 17 +- R/eigen_centrality.R | 34 ++-- R/gamma.R | 14 - R/imbal_steps.R | 9 - R/j_one_stat.R | 18 +- R/max_betweenness.R | 3 R/max_closeness.R | 15 + R/max_del_width.R | 12 + R/max_depth.R | 5 R/mean_branch_length.R | 6 R/mean_pair_dist.R | 2 R/minmax_adj.R | 11 - R/minmax_laplace.R | 11 - R/mw_over_md.R | 5 R/nLTT.R | 6 R/phylogenetic_diversity.R | 8 R/pigot_rho.R | 22 +- R/pitchforks.R | 3 R/psv.R | 4 R/rogers.R | 4 R/root_imbalance.R | 5 R/rpanda.R | 33 ++-- R/rquartet.R | 12 + R/sackin.R | 3 R/stairs.R | 12 - R/sym_nodes.R | 3 R/tot_coph.R | 3 R/tot_internal_path.R | 5 R/tot_path.R | 3 R/treeness.R | 7 R/util.R | 25 ++- R/var_leaf_depth.R | 8 R/var_pair_dist.R | 13 + R/wiener.R | 12 + README.md | 216 ++++++++++++++++++++++++++ inst/doc/Example_abc.html | 26 +-- inst/doc/Example_data.R | 7 inst/doc/Example_data.Rmd | 7 inst/doc/Example_data.html | 29 ++- inst/doc/Getting_started.html | 28 +-- inst/doc/Speed_improvement.html | 10 - inst/include/ILnumber.h | 2 inst/include/L2newick.h | 2 inst/include/avgladder.h | 2 inst/include/b1.h | 2 inst/include/beta.h | 4 inst/include/binom.h | 2 inst/include/branching_times.h | 2 inst/include/centralities.h | 3 inst/include/cherries.h | 2 inst/include/colless.h | 9 - inst/include/crown_age.h | 2 inst/include/depth.h | 6 inst/include/dist_nodes.h | 4 inst/include/gamma.h | 42 ----- inst/include/imbalance_steps.h | 2 inst/include/ltable.h | 4 inst/include/max_depth.h | 2 inst/include/mntd.h | 2 inst/include/mpd.h | 7 inst/include/nltt.h | 2 inst/include/phylo2L.h | 4 inst/include/phylodiv.h | 4 inst/include/phylotree.h | 2 inst/include/pigot_rho.h | 2 inst/include/root_imbal.h | 2 inst/include/sackin.h | 2 inst/include/sym_nodes.h | 2 inst/include/util.h | 32 ++- man/b2.Rd | 2 man/beta_statistic.Rd | 14 - man/blum.Rd | 7 man/branching_times.Rd | 5 man/colless_corr.Rd | 2 man/crown_age.Rd | 5 man/diameter.Rd | 2 man/eigen_centrality.Rd | 17 +- man/entropy_j.Rd | 2 man/ew_colless.Rd | 2 man/i_stat.Rd |only man/imbalance_steps.Rd | 4 man/j_one.Rd | 15 + man/laplacian_spectrum.Rd | 11 - man/max_del_width.Rd | 7 man/mean_i.Rd | 11 - man/minmax_adj.Rd | 8 man/minmax_laplace.Rd | 8 man/pigot_rho.Rd | 16 - man/rogers.Rd | 4 man/root_imbalance.Rd | 2 man/rquartet.Rd | 2 man/sshape.Rd |only man/stairs2.Rd | 6 man/tree_height.Rd | 12 - man/var_leaf_depth.Rd | 3 src/Makevars | 4 src/Makevars.win | 4 src/RcppExports.cpp | 49 +++--- src/beta.cpp | 5 src/brts.cpp | 13 - src/centralities.cpp | 4 src/colless.cpp | 5 src/depth.cpp | 4 src/ladder.cpp | 4 src/laplacian.cpp | 63 +++++++ src/mpd.cpp | 12 - src/phylo.cpp | 5 src/sackin.cpp | 4 tests/testthat/test-allstats.R | 7 tests/testthat/test-brlen.R | 8 tests/testthat/test-j.R | 10 + tests/testthat/test-minmax_laplace.R | 4 tests/testthat/test-mntd.R | 8 tests/testthat/test-mpd.R | 7 tests/testthat/test-polytomies.R | 6 tests/testthat/test-psv.R | 7 tests/testthat/test-rquartet.R | 12 - tests/testthat/test-style.R | 4 tests/testthat/test-var-mpd.R | 8 tests/testthat/test-var_leaf_depth.R | 3 tests/testthat/test-wiener.R | 8 vignettes/Example_data.Rmd | 7 144 files changed, 1247 insertions(+), 621 deletions(-)
Title: Graphical Analysis of Variance
Description: This small collection of functions provides what we call elemental graphics for display of analysis of variance
results, David C. Hoaglin, Frederick Mosteller and John W. Tukey (1991, ISBN:978-0-471-52735-0), Paul R. Rosenbaum (1989)
<doi:10.2307/2684513>, Robert M. Pruzek and James E. Helmreich <https://jse.amstat.org/v17n1/helmreich.html>.
The term elemental derives from the fact that each function is aimed at construction of
graphical displays that afford direct visualizations of data with respect to the fundamental
questions that drive the particular analysis of variance methods. These functions can be
particularly helpful for students and non-statistician analysts. But these methods should be
quite generally helpful for work-a-day applications of all kinds, as they can help to identify
outliers, clusters or patterns, as well as highlight the role of non-linear transformations of data.
Author: Frederic Bertrand [aut, cre] ,
Robert M. Pruzek [aut],
James E. Helmreich [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between granova versions 2.2 dated 2023-03-22 and 2.3 dated 2025-09-11
DESCRIPTION | 25 +- MD5 | 29 ++- NAMESPACE | 40 +++- NEWS.md |only R/granova-package.R |only R/granova.1w.R | 423 +++++++++++++++++++++++++------------------------ README.md |only build |only inst |only man/blood_lead.Rd | 39 +++- man/granova-package.Rd | 73 ++------ man/granova.1w.Rd | 16 - tests |only 13 files changed, 350 insertions(+), 295 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.1.9 dated 2025-08-31 and 2.2.0 dated 2025-09-11
DESCRIPTION | 8 MD5 | 19 +- NAMESPACE | 2 R/GeoCV.R | 37 ++- R/GeoSimcond.R | 473 +++++++++++++++++++++++++++++++++++++-------------- R/TB.R | 3 src/2kummer.c | 24 ++ src/GeoModels_init.c | 14 - src/Utility.c | 274 ++++++++++++++++++++++------- src/gamma_gibbs.c |only src/header.h | 2 11 files changed, 629 insertions(+), 227 deletions(-)
Title: Non-Negative Matrix Factorization for Single-Cell Omics
Description: A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.
Author: Massimo Andreatta [aut, cre] ,
Santiago Carmona [aut]
Maintainer: Massimo Andreatta <massimo.andreatta@unige.ch>
Diff between GeneNMF versions 0.8.0 dated 2025-04-24 and 0.9.2 dated 2025-09-11
DESCRIPTION | 13 +++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ R/main.R | 40 ++++++++++++++++++++++++++++++---------- R/utils.R | 13 +++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 11 +++++++++++ man/runGSEA.Rd | 7 ++++--- 9 files changed, 69 insertions(+), 33 deletions(-)
Title: Calibration, Validation, and Simulation of TKTD Models
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
Author: Nils Kehrein [aut, cre],
Dirk Nickisch [aut],
Peter Vermeiren [aut],
Torben Wittwer [ctb],
Johannes Witt [ctb],
Andre Gergs [ctb]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between cvasi versions 1.4.0 dated 2025-02-28 and 1.5.0 dated 2025-09-11
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cvasi-1.5.0/cvasi/tests/testthat/test-lik_profile.R | 34 cvasi-1.5.0/cvasi/tests/testthat/test-log_lik.R | 59 cvasi-1.5.0/cvasi/tests/testthat/test-model-algae.R | 268 +- cvasi-1.5.0/cvasi/tests/testthat/test-model-guts.R |only cvasi-1.5.0/cvasi/tests/testthat/test-model-lemna_schmitt.R | 14 cvasi-1.5.0/cvasi/tests/testthat/test-model-magma.R |only cvasi-1.5.0/cvasi/tests/testthat/test-plot.R | 34 cvasi-1.5.0/cvasi/tests/testthat/test-ringtest_dataA_IT.R |only cvasi-1.5.0/cvasi/tests/testthat/test-ringtest_dataA_SD.R |only cvasi-1.5.0/cvasi/tests/testthat/test-sequence.R | 240 ++ cvasi-1.5.0/cvasi/tests/testthat/test-set.R | 28 cvasi-1.5.0/cvasi/tests/testthat/test-set_bounds.R | 42 cvasi-1.5.0/cvasi/tests/testthat/test-set_exposure.R | 100 cvasi-1.5.0/cvasi/tests/testthat/test-set_init.R |only cvasi-1.5.0/cvasi/tests/testthat/test-set_param.R | 62 cvasi-1.5.0/cvasi/tests/testthat/test-set_times.R |only cvasi-1.5.0/cvasi/tests/testthat/test-show.R | 13 cvasi-1.5.0/cvasi/tests/testthat/test-simulate.R |only cvasi-1.5.0/cvasi/tests/testthat/test-simulate_batch.R | 4 cvasi-1.5.0/cvasi/tests/testthat/test-simulate_scenario.R |only cvasi-1.5.0/cvasi/tests/testthat/test-simulate_sequence.R | 78 cvasi-1.5.0/cvasi/tests/testthat/test-simulate_transfer.R | 13 cvasi-1.5.0/cvasi/tests/testthat/test-tox_data.R |only cvasi-1.5.0/cvasi/tests/testthat/test-verify-guts.R |only cvasi-1.5.0/cvasi/tests/testthat/test-verify-guts_red.R | 46 cvasi-1.5.0/cvasi/vignettes/cvasi-1-manual.Rmd | 19 cvasi-1.5.0/cvasi/vignettes/cvasi-2-howto.Rmd | 167 + 205 files changed, 6418 insertions(+), 3275 deletions(-)
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include regression models
(multilevel, multivariate, bayesian), between case standardised mean difference,
overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u', 'IRD', 'baseline corrected tau',
'CDC'), and randomization tests. Data preparation functions support outlier
detection, handling missing values, scaling, and custom transformations.
An export function helps to generate html, word, and latex tables in a
publication friendly style. A shiny app allows to use scan in a graphical
user interface.
More details can be found in the online book 'Analyzing single-case data with
R and scan', Juergen Wilbert (2025)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scan versions 0.66.0 dated 2025-09-02 and 0.67.0 dated 2025-09-11
scan-0.66.0/scan/R/export.sc_hplm.R |only scan-0.66.0/scan/R/print.sc_ac.R |only scan-0.66.0/scan/R/print.sc_bctau.R |only scan-0.66.0/scan/R/print.sc_cdc.R |only scan-0.66.0/scan/R/print.sc_outlier.R |only scan-0.66.0/scan/R/print.sc_rand.R |only scan-0.67.0/scan/DESCRIPTION | 10 scan-0.67.0/scan/MD5 | 112 +- scan-0.67.0/scan/NAMESPACE | 7 scan-0.67.0/scan/NEWS.md | 12 scan-0.67.0/scan/R/corrected_tau.R | 6 scan-0.67.0/scan/R/export.R | 3 scan-0.67.0/scan/R/ird.R | 55 - scan-0.67.0/scan/R/mplm.R | 13 scan-0.67.0/scan/R/print-export-ac.R |only scan-0.67.0/scan/R/print-export-cdc.R |only scan-0.67.0/scan/R/print-export-outlier.R |only scan-0.67.0/scan/R/print-export-plm.R | 5 scan-0.67.0/scan/R/print-export-rand-test.R |only scan-0.67.0/scan/R/print.export-bctau.R |only scan-0.67.0/scan/R/private_options.R | 12 scan-0.67.0/scan/R/scan-package.R | 2 scan-0.67.0/scan/R/scan.R | 3 scan-0.67.0/scan/R/shinyscan.R | 8 scan-0.67.0/scan/inst/CITATION | 2 scan-0.67.0/scan/inst/shiny_scan/resources.R | 20 scan-0.67.0/scan/inst/shiny_scan/rsconnect/shinyapps.io/jazznbass/shinyscan.dcf |only scan-0.67.0/scan/inst/shiny_scan/server.R | 470 ++++++---- scan-0.67.0/scan/inst/shiny_scan/ui.R | 169 ++- scan-0.67.0/scan/man/add_l2.Rd | 2 scan-0.67.0/scan/man/as.data.frame.scdf.Rd | 2 scan-0.67.0/scan/man/as_scdf.Rd | 2 scan-0.67.0/scan/man/autocorr.Rd | 41 scan-0.67.0/scan/man/bplm.Rd | 4 scan-0.67.0/scan/man/cdc.Rd | 35 scan-0.67.0/scan/man/corrected_tau.Rd | 50 + scan-0.67.0/scan/man/fill_missing.Rd | 2 scan-0.67.0/scan/man/hplm.Rd | 4 scan-0.67.0/scan/man/ird.Rd | 20 scan-0.67.0/scan/man/mplm.Rd | 4 scan-0.67.0/scan/man/nap.Rd | 2 scan-0.67.0/scan/man/outlier.Rd | 35 scan-0.67.0/scan/man/overlap.Rd | 2 scan-0.67.0/scan/man/pand.Rd | 2 scan-0.67.0/scan/man/pem.Rd | 2 scan-0.67.0/scan/man/pet.Rd | 2 scan-0.67.0/scan/man/plm.Rd | 4 scan-0.67.0/scan/man/pnd.Rd | 2 scan-0.67.0/scan/man/print.sc.Rd | 25 scan-0.67.0/scan/man/rand_test.Rd | 32 scan-0.67.0/scan/man/ranks.Rd | 2 scan-0.67.0/scan/man/rescale.Rd | 2 scan-0.67.0/scan/man/scdf.Rd | 2 scan-0.67.0/scan/man/select_cases.Rd | 2 scan-0.67.0/scan/man/set_vars.Rd | 2 scan-0.67.0/scan/man/shift.Rd | 2 scan-0.67.0/scan/man/shinyscan.Rd | 10 scan-0.67.0/scan/man/smooth_cases.Rd | 2 scan-0.67.0/scan/man/standardize.Rd | 2 scan-0.67.0/scan/man/tau_u.Rd | 4 scan-0.67.0/scan/man/transform.scdf.Rd | 2 scan-0.67.0/scan/man/trend.Rd | 6 scan-0.67.0/scan/man/truncate_phase.Rd | 2 63 files changed, 837 insertions(+), 386 deletions(-)
Title: Diagnostic Index Expectation Maximisation in R
Description: Likelihood-based genome polarisation finds which alleles of genomic markers
belong to which side of the barrier.
Co-estimates which individuals belong to either side of the barrier and barrier strength.
Uses expectation maximisation in likelihood framework. The method is described in
Baird et al. (2023) <doi:10.1111/2041-210X.14010>.
Author: Natalia Martinkova [aut, cre] ,
Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between diemr versions 1.4.3 dated 2025-01-20 and 1.5 dated 2025-09-11
DESCRIPTION | 15 MD5 | 67 +- NAMESPACE | 5 NEWS.md | 11 R/diem.r | 2 R/importPolarized.r | 2 R/internal.r | 146 ++++- R/plotMarkerAxis.r | 199 ++++++- R/plotPolarized.r | 264 +++++++--- R/rank2map.r | 2 R/variantSites.r |only R/vcf2diem.r | 4 build/vignette.rds |binary inst/doc/Importing-data-for-genome-polarisation.html | 4 inst/doc/Understanding-genome-polarisation-output-files.html | 4 inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html | 8 inst/extdata/testBarrier.txt |only inst/extdata/testBarrier2.txt |only man/importPolarized.Rd | 2 man/markerAxis.Rd |only man/plotDeFinetti.Rd | 3 man/plotMarkerAxis.Rd | 79 ++ man/plotPolarized.Rd | 100 ++- man/rank2mapChr.Rd |only man/readIncludedSites.Rd |only man/resolveCompartments.Rd |only man/sImport.Rd |only man/smoothPolarizedGenotypes.Rd | 3 man/truncatedLaplace.Rd | 14 man/unbiasedWeightedStateChoice.Rd | 20 man/variantSites.Rd |only tests/testthat/test_CheckDiemFormat.r | 3 tests/testthat/test_ModelOfDiagnostics.r | 12 tests/testthat/test_emPolarise.r | 1 tests/testthat/test_importPolarized.r | 59 +- tests/testthat/test_internal.r | 151 +++-- tests/testthat/test_pHetErrOnStateCounts.r | 2 tests/testthat/test_plotPolarized.r | 47 + tests/testthat/test_vcf2diem.r | 110 +--- 39 files changed, 928 insertions(+), 411 deletions(-)
Title: Computational Test for Conditional Independence
Description: Tool for performing computational testing for conditional independence between variables in a dataset. 'CCI' implements permutation in combination with Monte Carlo Cross-Validation in generating null distributions and test statistics. For more details see Computational Test for Conditional Independence (2024) <doi:10.3390/a17080323>.
Author: Christian B. H. Thorjussen [aut, cre] ,
Kristian Hovde Liland [aut]
Maintainer: Christian B. H. Thorjussen <christianbern@gmail.com>
Diff between CCI versions 0.3.1 dated 2025-08-28 and 0.3.4 dated 2025-09-11
CCI-0.3.1/CCI/R/data.R |only CCI-0.3.1/CCI/man/BinaryData.Rd |only CCI-0.3.1/CCI/man/BivMultinominal.Rd |only CCI-0.3.1/CCI/man/BivNonLinearCategorization.Rd |only CCI-0.3.1/CCI/man/ComplexCategorization.Rd |only CCI-0.3.1/CCI/man/ExpLogData.Rd |only CCI-0.3.1/CCI/man/ExpLogThreshold.Rd |only CCI-0.3.1/CCI/man/GridPartition.Rd |only CCI-0.3.1/CCI/man/InteractiondData.Rd |only CCI-0.3.1/CCI/man/NonLinNormalZs.Rd |only CCI-0.3.1/CCI/man/NonLinearData.Rd |only CCI-0.3.1/CCI/man/PolyDecision.Rd |only CCI-0.3.1/CCI/man/QuadThresh.Rd |only CCI-0.3.1/CCI/man/SinCosThreshold.Rd |only CCI-0.3.1/CCI/man/SineGaussian.Rd |only CCI-0.3.1/CCI/man/SineGaussianBiv.Rd |only CCI-0.3.1/CCI/man/SineGaussianNoise.Rd |only CCI-0.3.1/CCI/man/TrigData.Rd |only CCI-0.3.1/CCI/man/UniformNoise.Rd |only CCI-0.3.1/CCI/tests/testthat/testCCI.R |only CCI-0.3.4/CCI/DESCRIPTION | 8 +- CCI-0.3.4/CCI/MD5 | 85 +++++++++++------------- CCI-0.3.4/CCI/NAMESPACE | 29 -------- CCI-0.3.4/CCI/R/CCI.test.R | 30 +++----- CCI-0.3.4/CCI/R/QQplot.R | 29 ++++++-- CCI-0.3.4/CCI/R/datasets.R |only CCI-0.3.4/CCI/R/perm.test.R | 17 ++-- CCI-0.3.4/CCI/R/plot.R | 31 +++++++- CCI-0.3.4/CCI/R/reports.R | 44 ++++++------ CCI-0.3.4/CCI/R/test.gen.R | 33 ++++----- CCI-0.3.4/CCI/R/wrappers.R | 50 +++++++------- CCI-0.3.4/CCI/README.md | 23 ++---- CCI-0.3.4/CCI/data |only CCI-0.3.4/CCI/man/CCI.test.Rd | 17 +--- CCI-0.3.4/CCI/man/ExponentialNoise.Rd | 48 +++++++------ CCI-0.3.4/CCI/man/HardCase.Rd | 46 +++++++----- CCI-0.3.4/CCI/man/NonLinNormal.Rd | 46 +++++++----- CCI-0.3.4/CCI/man/NonLinNormalZs_d0.Rd |only CCI-0.3.4/CCI/man/NonLinNormalZs_d05.Rd |only CCI-0.3.4/CCI/man/NonLinearCategorization.Rd | 43 ++++++------ CCI-0.3.4/CCI/man/NormalData.Rd | 40 ++++++----- CCI-0.3.4/CCI/man/PoissonNoise.Rd | 48 +++++++------ CCI-0.3.4/CCI/man/PolyData.Rd | 42 +++++++---- CCI-0.3.4/CCI/man/QQplot.Rd | 21 ++++- CCI-0.3.4/CCI/man/UniformNoise_large.Rd |only CCI-0.3.4/CCI/man/perm.test.Rd | 5 - CCI-0.3.4/CCI/man/plot.CCI.Rd | 12 +++ CCI-0.3.4/CCI/man/reports.Rd | 4 - CCI-0.3.4/CCI/man/test.gen.Rd | 11 +-- CCI-0.3.4/CCI/man/wrapper_ranger.Rd | 3 CCI-0.3.4/CCI/man/wrapper_xgboost.Rd | 3 CCI-0.3.4/CCI/tests/testthat/dev.R |only 52 files changed, 397 insertions(+), 371 deletions(-)
Title: Handling Vegetation Data Sets
Description: Import and handling data from vegetation-plot databases, especially
data stored in 'Turboveg 2' (<https://www.synbiosys.alterra.nl/turboveg/>).
Also import/export routines for exchange of data with 'Juice'
(<https://www.sci.muni.cz/botany/juice/>) are implemented.
Author: Miguel Alvarez [aut, cre]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between vegtable versions 0.1.8 dated 2023-03-14 and 0.1.10 dated 2025-09-11
DESCRIPTION | 16 +++--- MD5 | 70 ++++++++++++++++------------ NAMESPACE | 4 + NEWS.md | 22 +++++++++ R/count_taxa.R | 87 +++++++++++++++++++++--------------- R/crosstable.R | 75 +++++++++++++++++++++---------- R/layers2samples.R | 3 - R/make_cocktail.R | 5 +- R/new_layer.R |only R/subset.R | 2 R/summary.R | 5 +- R/trait_stats.R | 18 ++----- R/tv2vegtable.R | 5 +- R/used_synonyms.R | 26 +++++++--- R/veg_layers-data.R |only R/vegtable-class.R | 4 - data/Kenya_veg.rda |binary data/Wetlands.rda |binary data/aspect_conv.rda |binary data/braun_blanquet.rda |binary data/dune_veg.rda |binary data/veg_layers.rda |only man/count_taxa.Rd | 8 +-- man/crosstable.Rd | 55 ++++++++++++++++++++-- man/figures/logo.png |only man/figures/unnamed-chunk-5-1.png |only man/make_cocktail.Rd | 5 +- man/new_layer.Rd |only man/subset.Rd | 2 man/summary.Rd | 5 +- man/trait_stats.Rd | 9 --- man/tv2vegtable.Rd | 5 +- man/used_synonyms.Rd | 25 +++++++--- man/veg_aggregate.Rd | 2 man/veg_layers-data.Rd |only man/vegtable-class.Rd | 4 - tests/testthat/test-count_taxa.R | 6 ++ tests/testthat/test-crosstable.R | 10 ++++ tests/testthat/test-new_layer.R |only tests/testthat/test-used_synonyms.R | 9 ++- 40 files changed, 322 insertions(+), 165 deletions(-)
Title: A Time Series Toolbox for Official Statistics
Description: Plot official statistics' time series conveniently: automatic
legends, highlight windows, stacked bar chars with positive and
negative contributions, sum-as-line option, two y-axes with automatic
horizontal grids that fit both axes and other popular chart types.
'tstools' comes with a plethora of defaults to let you plot without
setting an abundance of parameters first, but gives you the
flexibility to tweak the defaults. In addition to charts, 'tstools'
provides a super fast, 'data.table' backed time series I/O that allows
the user to export / import long format, wide format and transposed
wide format data to various file types.
Author: Matthias Bannert [aut],
Severin Thoeni [aut],
Stephane Bisinger [aut, cre]
Maintainer: Stephane Bisinger <bisinger@kof.ethz.ch>
Diff between tstools versions 0.4.3 dated 2024-01-18 and 0.4.4 dated 2025-09-11
DESCRIPTION | 14 ++++++----- MD5 | 14 ++++++----- R/import_helpers.R | 24 ++++++++++++------- build/vignette.rds |binary inst/doc/tstools.R | 40 +++++++++++++++---------------- inst/doc/tstools.html | 63 +++++++++++++++++++++++++------------------------- man/wide_to_ts.Rd | 15 +++++++---- tests |only 8 files changed, 93 insertions(+), 77 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and scientific computing. Includes functions for parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.1.2 dated 2025-08-19 and 0.1.5 dated 2025-09-11
thisutils-0.1.2/thisutils/R/reexport.R |only thisutils-0.1.2/thisutils/man/str_wrap.Rd |only thisutils-0.1.5/thisutils/DESCRIPTION | 14 +-- thisutils-0.1.5/thisutils/MD5 | 45 +++++------ thisutils-0.1.5/thisutils/NAMESPACE | 6 - thisutils-0.1.5/thisutils/NEWS.md | 32 ++++++- thisutils-0.1.5/thisutils/R/add_pkg_file.R | 74 ++++++------------ thisutils-0.1.5/thisutils/R/as_matrix.R | 2 thisutils-0.1.5/thisutils/R/computation.R | 6 - thisutils-0.1.5/thisutils/R/log_message.R | 57 +++++++------- thisutils-0.1.5/thisutils/R/reexports.R |only thisutils-0.1.5/thisutils/R/sparse_cor.R | 12 +- thisutils-0.1.5/thisutils/R/thisutils-package.R | 9 +- thisutils-0.1.5/thisutils/R/utils.R | 89 ++++++---------------- thisutils-0.1.5/thisutils/man/add_pkg_file.Rd | 12 +- thisutils-0.1.5/thisutils/man/capitalize.Rd | 2 thisutils-0.1.5/thisutils/man/download.Rd | 3 thisutils-0.1.5/thisutils/man/grapes-ss-grapes.Rd | 8 - thisutils-0.1.5/thisutils/man/invoke_fun.Rd | 3 thisutils-0.1.5/thisutils/man/log_message.Rd | 57 +++++++------- thisutils-0.1.5/thisutils/man/remove_space.Rd | 18 ++-- thisutils-0.1.5/thisutils/man/sparse_cor.Rd | 2 thisutils-0.1.5/thisutils/man/try_get.Rd | 2 thisutils-0.1.5/thisutils/src/RcppExports.cpp | 1 thisutils-0.1.5/thisutils/src/table_to_matrix.cpp | 19 +++- 25 files changed, 230 insertions(+), 243 deletions(-)
Title: Access to Global Sub-National Income Data
Description: Provides access to granular sub-national income data from the
MCC-PIK Database Of Sub-national Economic Output (DOSE). The package
downloads and processes the data from its open repository on 'Zenodo'
(<https://zenodo.org/records/13773040>). Functions are provided to
fetch data at multiple geographic levels, match coordinates to
administrative regions, and access associated geometries.
Author: Pablo Garcia Guzman [aut, cre, cph]
Maintainer: Pablo Garcia Guzman <garciagp@ebrd.com>
Diff between subincomeR versions 0.3.0 dated 2025-02-16 and 0.4.0 dated 2025-09-11
DESCRIPTION | 9 ++++----- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/getDOSE.R | 4 ++-- inst/WORDLIST | 3 ++- inst/doc/regional-convergence.R | 1 - inst/doc/regional-convergence.Rmd | 1 - inst/doc/regional-convergence.html | 9 ++++----- vignettes/regional-convergence.Rmd | 1 - 9 files changed, 24 insertions(+), 24 deletions(-)
Title: Reproducible Data Science Environments with 'Nix'
Description: Simplifies the creation of reproducible data science environments
using the 'Nix' package manager, as described in
Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()`
function generates a complete description of the environment as a
`default.nix` file, which can then be built using 'Nix'. This results in
project specific software environments with pinned versions of R, packages,
linked system dependencies, and other tools or programming languages such
as Python or Julia. Additional helpers make it easy to run R code in
'Nix' software environments for testing and production.
Author: Bruno Rodrigues [aut, cre] ,
Philipp Baumann [aut] ,
David Watkins [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>),
Jacob Wujiciak-Jens [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/62 [...truncated...]
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rix versions 0.16.0 dated 2025-04-24 and 0.17.2 dated 2025-09-11
DESCRIPTION | 31 MD5 | 136 +-- NEWS.md | 20 R/rix.R | 52 + R/rix_helpers.R | 83 +- R/setup_cachix.R | 6 README.md | 34 build/vignette.rds |binary inst/doc/a-getting-started.html | 5 inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.R | 2 inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.Rmd | 57 - inst/doc/b1-setting-up-and-using-rix-on-linux-and-windows.html | 80 +- inst/doc/b2-setting-up-and-using-rix-on-macos.Rmd | 42 - inst/doc/b2-setting-up-and-using-rix-on-macos.html | 51 + inst/doc/c-using-rix-to-build-project-specific-environments.html | 5 inst/doc/d1-installing-r-packages-in-a-nix-environment.R | 19 inst/doc/d1-installing-r-packages-in-a-nix-environment.Rmd | 122 +++ inst/doc/d1-installing-r-packages-in-a-nix-environment.html | 157 +++- inst/doc/d2-installing-system-tools-and-texlive-packages-in-a-nix-environment.html | 5 inst/doc/e-configuring-ide.R | 12 inst/doc/e-configuring-ide.Rmd | 343 ++++++--- inst/doc/e-configuring-ide.html | 364 +++++----- inst/doc/f-renv2nix.html | 5 inst/doc/z-advanced-topic-building-an-environment-for-literate-programming.html | 5 inst/doc/z-advanced-topic-handling-packages-with-remote-dependencies.html | 5 inst/doc/z-advanced-topic-reproducible-analytical-pipelines-with-nix.html | 5 inst/doc/z-advanced-topic-running-r-or-shell-code-in-nix-from-r.html | 5 inst/doc/z-advanced-topic-using-nix-inside-docker.Rmd | 14 inst/doc/z-advanced-topic-using-nix-inside-docker.html | 19 inst/doc/z-advanced-topic-walkthrough-project.html | 5 inst/doc/z-contributing_to_nixpkgs.Rmd | 8 inst/doc/z-contributing_to_nixpkgs.html | 14 inst/extdata/available_df.csv | 21 inst/extdata/default.nix | 50 - man/renv2nix.Rd | 25 man/rix.Rd | 27 tests/testthat/_snaps/renv_helpers/default_datathin.nix | 8 tests/testthat/_snaps/renv_helpers/default_v0-14-0.nix | 8 tests/testthat/_snaps/renv_helpers/default_v0-15-5.nix | 8 tests/testthat/_snaps/renv_helpers/default_v0-17-3.nix | 8 tests/testthat/_snaps/renv_helpers/default_v1-0-7.nix | 8 tests/testthat/_snaps/rix-julia |only tests/testthat/_snaps/rix-python/python_default.nix | 4 tests/testthat/_snaps/rix/bioc-devel_default.nix | 4 tests/testthat/_snaps/rix/bleeding-edge_default.nix | 4 tests/testthat/_snaps/rix/code_default.nix | 4 tests/testthat/_snaps/rix/codium_default.nix | 4 tests/testthat/_snaps/rix/date_default.nix | 4 tests/testthat/_snaps/rix/frozen-edge_default.nix | 4 tests/testthat/_snaps/rix/no_quarto_default.nix | 4 tests/testthat/_snaps/rix/one_git_default.nix | 4 tests/testthat/_snaps/rix/other_default.nix | 4 tests/testthat/_snaps/rix/positron_default.nix | 4 tests/testthat/_snaps/rix/r-devel-bioc-devel_default.nix | 4 tests/testthat/_snaps/rix/r-devel_default.nix | 4 tests/testthat/_snaps/rix/rstudio_default.nix | 4 tests/testthat/_snaps/rix/yes_quarto_default.nix | 4 tests/testthat/_snaps/setup_cachix/nix.conf | 1 tests/testthat/result | 2 tests/testthat/test-available_r.R | 3 tests/testthat/test-rix-julia.R |only tests/testthat/testdata/remote-pkgs/mlr3_default.nix | 4 tests/testthat/testdata/remote-pkgs/mlr3_dups_default.nix | 4 vignettes/b1-setting-up-and-using-rix-on-linux-and-windows.Rmd | 57 - vignettes/b2-setting-up-and-using-rix-on-macos.Rmd | 42 - vignettes/d1-installing-r-packages-in-a-nix-environment.Rmd | 122 +++ vignettes/e-configuring-ide.Rmd | 343 ++++++--- vignettes/z-advanced-topic-using-nix-inside-docker.Rmd | 14 vignettes/z-contributing_to_nixpkgs.Rmd | 8 69 files changed, 1736 insertions(+), 798 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc] ,
Christoph Burow [aut, trl, dtc] ,
Michael Dietze [aut] ,
Margret C. Fuchs [aut] ,
Christoph Schmidt [aut] ,
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] ,
Norbert Mercier [aut] ,
Rachel K. Smedley [ct [...truncated...]
Maintainer: Sebastian Kreutzer <maintainer_luminescence@r-luminescence.org>
Diff between Luminescence versions 1.1.0 dated 2025-06-11 and 1.1.1 dated 2025-09-11
Luminescence-1.1.0/Luminescence/R/Analyse_SAR.OSLdata.R |only Luminescence-1.1.0/Luminescence/R/calc_Kars2008.R |only Luminescence-1.1.0/Luminescence/man/Analyse_SAR.OSLdata.Rd |only Luminescence-1.1.0/Luminescence/man/PSL2Risoe.BINfileData.Rd |only Luminescence-1.1.0/Luminescence/man/Second2Gray.Rd |only Luminescence-1.1.0/Luminescence/man/get_Risoe.BINfileData.Rd |only Luminescence-1.1.0/Luminescence/tests/testthat/test_Analyse_SAROSLdata.R |only Luminescence-1.1.1/Luminescence/DESCRIPTION | 8 Luminescence-1.1.1/Luminescence/MD5 | 775 +-- Luminescence-1.1.1/Luminescence/NAMESPACE | 6 Luminescence-1.1.1/Luminescence/NEWS.md | 277 + Luminescence-1.1.1/Luminescence/R/Luminescence-generics.R | 208 Luminescence-1.1.1/Luminescence/R/Luminescence-package.R | 26 Luminescence-1.1.1/Luminescence/R/RLum-class.R | 22 Luminescence-1.1.1/Luminescence/R/RLum.Analysis-class.R | 461 -- Luminescence-1.1.1/Luminescence/R/RLum.Data-class.R | 76 Luminescence-1.1.1/Luminescence/R/RLum.Data.Curve-class.R | 193 Luminescence-1.1.1/Luminescence/R/RLum.Data.Image-class.R | 106 Luminescence-1.1.1/Luminescence/R/RLum.Data.Spectrum-class.R | 113 Luminescence-1.1.1/Luminescence/R/RLum.Results-class.R | 158 Luminescence-1.1.1/Luminescence/R/Risoe.BINfileData-class.R | 146 Luminescence-1.1.1/Luminescence/R/Risoe.BINfileData2RLum.Analysis.R | 5 Luminescence-1.1.1/Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R | 5 Luminescence-1.1.1/Luminescence/R/analyse_Al2O3C_CrossTalk.R | 55 Luminescence-1.1.1/Luminescence/R/analyse_Al2O3C_ITC.R | 83 Luminescence-1.1.1/Luminescence/R/analyse_Al2O3C_Measurement.R | 81 Luminescence-1.1.1/Luminescence/R/analyse_FadingMeasurement.R | 93 Luminescence-1.1.1/Luminescence/R/analyse_IRSAR.RF.R | 67 Luminescence-1.1.1/Luminescence/R/analyse_SAR.CWOSL.R | 351 - Luminescence-1.1.1/Luminescence/R/analyse_SAR.TL.R | 67 Luminescence-1.1.1/Luminescence/R/analyse_ThermochronometryData.R | 7 Luminescence-1.1.1/Luminescence/R/analyse_baSAR.R | 126 Luminescence-1.1.1/Luminescence/R/analyse_pIRIRSequence.R | 10 Luminescence-1.1.1/Luminescence/R/analyse_portableOSL.R | 19 Luminescence-1.1.1/Luminescence/R/apply_CosmicRayRemoval.R | 63 Luminescence-1.1.1/Luminescence/R/apply_Crosstalk.R | 1 Luminescence-1.1.1/Luminescence/R/apply_EfficiencyCorrection.R | 1 Luminescence-1.1.1/Luminescence/R/calc_AliquotSize.R | 3 Luminescence-1.1.1/Luminescence/R/calc_AverageDose.R | 1 Luminescence-1.1.1/Luminescence/R/calc_CentralDose.R | 5 Luminescence-1.1.1/Luminescence/R/calc_CobbleDoseRate.R | 1 Luminescence-1.1.1/Luminescence/R/calc_CommonDose.R | 3 Luminescence-1.1.1/Luminescence/R/calc_CosmicDoseRate.R | 1 Luminescence-1.1.1/Luminescence/R/calc_EED_Model.R | 45 Luminescence-1.1.1/Luminescence/R/calc_FadingCorr.R | 9 Luminescence-1.1.1/Luminescence/R/calc_FastRatio.R | 16 Luminescence-1.1.1/Luminescence/R/calc_FiniteMixture.R | 15 Luminescence-1.1.1/Luminescence/R/calc_FuchsLang2001.R | 18 Luminescence-1.1.1/Luminescence/R/calc_HomogeneityTest.R | 14 Luminescence-1.1.1/Luminescence/R/calc_Huntley2006.R | 11 Luminescence-1.1.1/Luminescence/R/calc_IEU.R | 11 Luminescence-1.1.1/Luminescence/R/calc_Lamothe2003.R | 203 Luminescence-1.1.1/Luminescence/R/calc_MaxDose.R | 1 Luminescence-1.1.1/Luminescence/R/calc_MinDose.R | 67 Luminescence-1.1.1/Luminescence/R/calc_MoransI.R | 22 Luminescence-1.1.1/Luminescence/R/calc_OSLLxTxDecomposed.R | 3 Luminescence-1.1.1/Luminescence/R/calc_OSLLxTxRatio.R | 43 Luminescence-1.1.1/Luminescence/R/calc_SourceDoseRate.R | 5 Luminescence-1.1.1/Luminescence/R/calc_Statistics.R | 13 Luminescence-1.1.1/Luminescence/R/calc_TLLxTxRatio.R | 60 Luminescence-1.1.1/Luminescence/R/calc_ThermalLifetime.R | 8 Luminescence-1.1.1/Luminescence/R/calc_WodaFuchs2008.R | 28 Luminescence-1.1.1/Luminescence/R/calc_gSGC.R | 2 Luminescence-1.1.1/Luminescence/R/calc_gSGC_feldspar.R | 2 Luminescence-1.1.1/Luminescence/R/combine_De_Dr.R | 3 Luminescence-1.1.1/Luminescence/R/convert_Activity2Concentration.R | 1 Luminescence-1.1.1/Luminescence/R/convert_BIN2CSV.R | 7 Luminescence-1.1.1/Luminescence/R/convert_CW2pHMi.R | 34 Luminescence-1.1.1/Luminescence/R/convert_CW2pLM.R | 24 Luminescence-1.1.1/Luminescence/R/convert_CW2pLMi.R | 25 Luminescence-1.1.1/Luminescence/R/convert_CW2pPMi.R | 27 Luminescence-1.1.1/Luminescence/R/convert_Concentration2DoseRate.R | 5 Luminescence-1.1.1/Luminescence/R/convert_Daybreak2CSV.R | 1 Luminescence-1.1.1/Luminescence/R/convert_PSL2CSV.R | 1 Luminescence-1.1.1/Luminescence/R/convert_PSL2Risoe.BINfileData.R | 14 Luminescence-1.1.1/Luminescence/R/convert_RLum2Risoe.BINfileData.R | 3 Luminescence-1.1.1/Luminescence/R/convert_SG2MG.R | 3 Luminescence-1.1.1/Luminescence/R/convert_Second2Gray.R | 14 Luminescence-1.1.1/Luminescence/R/convert_Wavelength2Energy.R | 9 Luminescence-1.1.1/Luminescence/R/convert_XSYG2CSV.R | 1 Luminescence-1.1.1/Luminescence/R/correct_PMTLinearity.R |only Luminescence-1.1.1/Luminescence/R/extract_IrradiationTimes.R | 52 Luminescence-1.1.1/Luminescence/R/extract_ROI.R | 7 Luminescence-1.1.1/Luminescence/R/fit_CWCurve.R | 70 Luminescence-1.1.1/Luminescence/R/fit_DoseResponseCurve.R | 148 Luminescence-1.1.1/Luminescence/R/fit_EmissionSpectra.R | 13 Luminescence-1.1.1/Luminescence/R/fit_IsothermalHolding.R | 64 Luminescence-1.1.1/Luminescence/R/fit_LMCurve.R | 25 Luminescence-1.1.1/Luminescence/R/fit_OSLLifeTimes.R | 76 Luminescence-1.1.1/Luminescence/R/fit_SurfaceExposure.R | 33 Luminescence-1.1.1/Luminescence/R/fit_ThermalQuenching.R | 11 Luminescence-1.1.1/Luminescence/R/get_Layout.R | 1 Luminescence-1.1.1/Luminescence/R/get_Quote.R | 1 Luminescence-1.1.1/Luminescence/R/get_rightAnswer.R | 1 Luminescence-1.1.1/Luminescence/R/github.R | 16 Luminescence-1.1.1/Luminescence/R/import_Data.R | 1 Luminescence-1.1.1/Luminescence/R/install_DevelopmentVersion.R | 1 Luminescence-1.1.1/Luminescence/R/internal_as.latex.table.R | 6 Luminescence-1.1.1/Luminescence/R/internals_RLum.R | 386 - Luminescence-1.1.1/Luminescence/R/internals_Thermochronometry.R | 235 - Luminescence-1.1.1/Luminescence/R/merge_RLum.Analysis.R | 68 Luminescence-1.1.1/Luminescence/R/merge_RLum.Data.Curve.R | 46 Luminescence-1.1.1/Luminescence/R/merge_RLum.Data.Spectrum.R | 24 Luminescence-1.1.1/Luminescence/R/merge_RLum.R | 66 Luminescence-1.1.1/Luminescence/R/merge_RLum.Results.R | 18 Luminescence-1.1.1/Luminescence/R/merge_Risoe.BINfileData.R | 91 Luminescence-1.1.1/Luminescence/R/methods_RLum.R | 9 Luminescence-1.1.1/Luminescence/R/plot_AbanicoPlot.R | 2206 ++-------- Luminescence-1.1.1/Luminescence/R/plot_DRCSummary.R | 4 Luminescence-1.1.1/Luminescence/R/plot_DRTResults.R | 76 Luminescence-1.1.1/Luminescence/R/plot_DetPlot.R | 56 Luminescence-1.1.1/Luminescence/R/plot_DoseResponseCurve.R | 122 Luminescence-1.1.1/Luminescence/R/plot_FilterCombinations.R | 82 Luminescence-1.1.1/Luminescence/R/plot_GrowthCurve.R | 3 Luminescence-1.1.1/Luminescence/R/plot_Histogram.R | 9 Luminescence-1.1.1/Luminescence/R/plot_KDE.R | 100 Luminescence-1.1.1/Luminescence/R/plot_MoranScatterplot.R | 8 Luminescence-1.1.1/Luminescence/R/plot_NRt.R | 26 Luminescence-1.1.1/Luminescence/R/plot_OSLAgeSummary.R | 42 Luminescence-1.1.1/Luminescence/R/plot_RLum.Analysis.R | 112 Luminescence-1.1.1/Luminescence/R/plot_RLum.Data.Curve.R | 60 Luminescence-1.1.1/Luminescence/R/plot_RLum.Data.Image.R | 19 Luminescence-1.1.1/Luminescence/R/plot_RLum.Data.Spectrum.R | 222 - Luminescence-1.1.1/Luminescence/R/plot_RLum.R | 20 Luminescence-1.1.1/Luminescence/R/plot_RLum.Results.R | 64 Luminescence-1.1.1/Luminescence/R/plot_ROI.R | 1 Luminescence-1.1.1/Luminescence/R/plot_RadialPlot.R | 375 - Luminescence-1.1.1/Luminescence/R/plot_Risoe.BINfileData.R | 176 Luminescence-1.1.1/Luminescence/R/plot_SingleGrainDisc.R | 13 Luminescence-1.1.1/Luminescence/R/plot_ViolinPlot.R | 36 Luminescence-1.1.1/Luminescence/R/read_BIN2R.R | 47 Luminescence-1.1.1/Luminescence/R/read_Daybreak2R.R | 5 Luminescence-1.1.1/Luminescence/R/read_HeliosOSL2R.R | 3 Luminescence-1.1.1/Luminescence/R/read_PSL2R.R | 15 Luminescence-1.1.1/Luminescence/R/read_RF2R.R | 1 Luminescence-1.1.1/Luminescence/R/read_SPE2R.R | 1 Luminescence-1.1.1/Luminescence/R/read_TIFF2R.R | 3 Luminescence-1.1.1/Luminescence/R/read_XSYG2R.R | 87 Luminescence-1.1.1/Luminescence/R/remove_SignalBackground.R | 19 Luminescence-1.1.1/Luminescence/R/report_RLum.R | 36 Luminescence-1.1.1/Luminescence/R/scale_GammaDose.R | 1 Luminescence-1.1.1/Luminescence/R/subset_SingleGrainData.R | 1 Luminescence-1.1.1/Luminescence/R/template_DRAC.R | 1 Luminescence-1.1.1/Luminescence/R/trim_RLum.Data.R | 7 Luminescence-1.1.1/Luminescence/R/tune_Data.R | 1 Luminescence-1.1.1/Luminescence/R/use_DRAC.R | 52 Luminescence-1.1.1/Luminescence/R/utils_DRAC.R | 4 Luminescence-1.1.1/Luminescence/R/verify_SingleGrainData.R | 9 Luminescence-1.1.1/Luminescence/R/write_R2BIN.R | 155 Luminescence-1.1.1/Luminescence/R/write_R2TIFF.R | 4 Luminescence-1.1.1/Luminescence/R/write_RLum2CSV.R | 6 Luminescence-1.1.1/Luminescence/R/zzz.R | 12 Luminescence-1.1.1/Luminescence/README.md | 4 Luminescence-1.1.1/Luminescence/build/partial.rdb |binary Luminescence-1.1.1/Luminescence/build/vignette.rds |binary Luminescence-1.1.1/Luminescence/inst/WORDLIST | 37 Luminescence-1.1.1/Luminescence/inst/doc/crosstalk.html | 62 Luminescence-1.1.1/Luminescence/man/BaseDataSet.GrainSizeAttenuation.Rd | 11 Luminescence-1.1.1/Luminescence/man/GitHub-API.Rd | 2 Luminescence-1.1.1/Luminescence/man/RLum-class.Rd | 23 Luminescence-1.1.1/Luminescence/man/RLum.Analysis-class.Rd | 257 - Luminescence-1.1.1/Luminescence/man/RLum.Data-class.Rd | 49 Luminescence-1.1.1/Luminescence/man/RLum.Data.Curve-class.Rd | 151 Luminescence-1.1.1/Luminescence/man/RLum.Data.Image-class.Rd | 99 Luminescence-1.1.1/Luminescence/man/RLum.Data.Spectrum-class.Rd | 112 Luminescence-1.1.1/Luminescence/man/RLum.Results-class.Rd | 107 Luminescence-1.1.1/Luminescence/man/Risoe.BINfileData-class.Rd | 81 Luminescence-1.1.1/Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd | 2 Luminescence-1.1.1/Luminescence/man/analyse_Al2O3C_CrossTalk.Rd | 19 Luminescence-1.1.1/Luminescence/man/analyse_Al2O3C_ITC.Rd | 2 Luminescence-1.1.1/Luminescence/man/analyse_Al2O3C_Measurement.Rd | 2 Luminescence-1.1.1/Luminescence/man/analyse_FadingMeasurement.Rd | 5 Luminescence-1.1.1/Luminescence/man/analyse_IRSAR.RF.Rd | 2 Luminescence-1.1.1/Luminescence/man/analyse_SAR.CWOSL.Rd | 150 Luminescence-1.1.1/Luminescence/man/analyse_SAR.TL.Rd | 2 Luminescence-1.1.1/Luminescence/man/analyse_baSAR.Rd | 6 Luminescence-1.1.1/Luminescence/man/analyse_pIRIRSequence.Rd | 4 Luminescence-1.1.1/Luminescence/man/analyse_portableOSL.Rd | 2 Luminescence-1.1.1/Luminescence/man/apply_CosmicRayRemoval.Rd | 28 Luminescence-1.1.1/Luminescence/man/apply_Crosstalk.Rd | 2 Luminescence-1.1.1/Luminescence/man/apply_EfficiencyCorrection.Rd | 2 Luminescence-1.1.1/Luminescence/man/bin_RLum.Data.Rd | 39 Luminescence-1.1.1/Luminescence/man/calc_AliquotSize.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_AverageDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_CobbleDoseRate.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_CosmicDoseRate.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_EED_Model.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_FadingCorr.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_FastRatio.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_FuchsLang2001.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_Huntley2006.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_IEU.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_Lamothe2003.Rd | 76 Luminescence-1.1.1/Luminescence/man/calc_MaxDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_MinDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_MoransI.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_OSLLxTxDecomposed.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_OSLLxTxRatio.Rd | 18 Luminescence-1.1.1/Luminescence/man/calc_SourceDoseRate.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_Statistics.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_TLLxTxRatio.Rd | 10 Luminescence-1.1.1/Luminescence/man/calc_ThermalLifetime.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_WodaFuchs2008.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_gSGC.Rd | 2 Luminescence-1.1.1/Luminescence/man/calc_gSGC_feldspar.Rd | 2 Luminescence-1.1.1/Luminescence/man/combine_De_Dr.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_Activity2Concentration.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_BIN2CSV.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_CW2pHMi.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_CW2pLM.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_CW2pLMi.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_CW2pPMi.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_Concentration2DoseRate.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_Daybreak2CSV.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_PSL2CSV.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_PSL2Risoe.BINfileData.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_RLum2Risoe.BINfileData.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_SG2MG.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_Second2Gray.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_Wavelength2Energy.Rd | 2 Luminescence-1.1.1/Luminescence/man/convert_XSYG2CSV.Rd | 2 Luminescence-1.1.1/Luminescence/man/correct_PMTLinearity.Rd |only Luminescence-1.1.1/Luminescence/man/dot-as.latex.table.Rd | 2 Luminescence-1.1.1/Luminescence/man/extract_IrradiationTimes.Rd | 31 Luminescence-1.1.1/Luminescence/man/extract_ROI.Rd | 2 Luminescence-1.1.1/Luminescence/man/fit_CWCurve.Rd | 11 Luminescence-1.1.1/Luminescence/man/fit_DoseResponseCurve.Rd | 19 Luminescence-1.1.1/Luminescence/man/fit_EmissionSpectra.Rd | 2 Luminescence-1.1.1/Luminescence/man/fit_LMCurve.Rd | 2 Luminescence-1.1.1/Luminescence/man/fit_OSLLifeTimes.Rd | 2 Luminescence-1.1.1/Luminescence/man/fit_SurfaceExposure.Rd | 2 Luminescence-1.1.1/Luminescence/man/fit_ThermalQuenching.Rd | 2 Luminescence-1.1.1/Luminescence/man/get_Layout.Rd | 2 Luminescence-1.1.1/Luminescence/man/get_RLum.Rd | 146 Luminescence-1.1.1/Luminescence/man/get_rightAnswer.Rd | 2 Luminescence-1.1.1/Luminescence/man/import_Data.Rd | 2 Luminescence-1.1.1/Luminescence/man/length_RLum.Rd | 29 Luminescence-1.1.1/Luminescence/man/melt_RLum.Rd | 22 Luminescence-1.1.1/Luminescence/man/merge_RLum.Analysis.Rd | 17 Luminescence-1.1.1/Luminescence/man/merge_RLum.Data.Curve.Rd | 2 Luminescence-1.1.1/Luminescence/man/merge_RLum.Data.Spectrum.Rd | 2 Luminescence-1.1.1/Luminescence/man/merge_RLum.Rd | 19 Luminescence-1.1.1/Luminescence/man/merge_RLum.Results.Rd | 2 Luminescence-1.1.1/Luminescence/man/merge_Risoe.BINfileData.Rd | 29 Luminescence-1.1.1/Luminescence/man/metadata.Rd | 71 Luminescence-1.1.1/Luminescence/man/names_RLum.Rd | 39 Luminescence-1.1.1/Luminescence/man/plot_AbanicoPlot.Rd | 4 Luminescence-1.1.1/Luminescence/man/plot_DRCSummary.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_DRTResults.Rd | 3 Luminescence-1.1.1/Luminescence/man/plot_DetPlot.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_DoseResponseCurve.Rd | 11 Luminescence-1.1.1/Luminescence/man/plot_FilterCombinations.Rd | 35 Luminescence-1.1.1/Luminescence/man/plot_GrowthCurve.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_Histogram.Rd | 3 Luminescence-1.1.1/Luminescence/man/plot_KDE.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_MoranScatterplot.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_NRt.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_OSLAgeSummary.Rd | 23 Luminescence-1.1.1/Luminescence/man/plot_RLum.Analysis.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_RLum.Data.Curve.Rd | 8 Luminescence-1.1.1/Luminescence/man/plot_RLum.Data.Image.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 8 Luminescence-1.1.1/Luminescence/man/plot_RLum.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_RLum.Results.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_ROI.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_RadialPlot.Rd | 7 Luminescence-1.1.1/Luminescence/man/plot_Risoe.BINfileData.Rd | 27 Luminescence-1.1.1/Luminescence/man/plot_SingleGrainDisc.Rd | 2 Luminescence-1.1.1/Luminescence/man/plot_ViolinPlot.Rd | 32 Luminescence-1.1.1/Luminescence/man/read_BIN2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_Daybreak2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_HeliosOSL2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_PSL2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_RF2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_SPE2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_TIFF2R.Rd | 2 Luminescence-1.1.1/Luminescence/man/read_XSYG2R.Rd | 35 Luminescence-1.1.1/Luminescence/man/remove_RLum.Rd | 19 Luminescence-1.1.1/Luminescence/man/remove_SignalBackground.Rd | 2 Luminescence-1.1.1/Luminescence/man/replicate_RLum.Rd | 20 Luminescence-1.1.1/Luminescence/man/report_RLum.Rd | 2 Luminescence-1.1.1/Luminescence/man/sTeve.Rd | 2 Luminescence-1.1.1/Luminescence/man/scale_GammaDose.Rd | 2 Luminescence-1.1.1/Luminescence/man/set_RLum.Rd | 103 Luminescence-1.1.1/Luminescence/man/set_Risoe.BINfileData.Rd | 2 Luminescence-1.1.1/Luminescence/man/show.Rd |only Luminescence-1.1.1/Luminescence/man/smooth_RLum.Rd | 73 Luminescence-1.1.1/Luminescence/man/sort_RLum.Rd | 52 Luminescence-1.1.1/Luminescence/man/structure_RLum.Rd | 22 Luminescence-1.1.1/Luminescence/man/subset_SingleGrainData.Rd | 2 Luminescence-1.1.1/Luminescence/man/template_DRAC.Rd | 2 Luminescence-1.1.1/Luminescence/man/trim_RLum.Data.Rd | 2 Luminescence-1.1.1/Luminescence/man/tune_Data.Rd | 2 Luminescence-1.1.1/Luminescence/man/use_DRAC.Rd | 2 Luminescence-1.1.1/Luminescence/man/verify_SingleGrainData.Rd | 2 Luminescence-1.1.1/Luminescence/man/view.Rd | 32 Luminescence-1.1.1/Luminescence/man/write_R2BIN.Rd | 2 Luminescence-1.1.1/Luminescence/man/write_R2TIFF.Rd | 2 Luminescence-1.1.1/Luminescence/man/write_RLum2CSV.Rd | 2 Luminescence-1.1.1/Luminescence/src/Makevars | 2 Luminescence-1.1.1/Luminescence/src/Makevars.win | 2 Luminescence-1.1.1/Luminescence/src/src_ThermoChronometry.cpp | 10 Luminescence-1.1.1/Luminescence/src/src_create_RLumDataCurve_matrix.cpp | 4 Luminescence-1.1.1/Luminescence/tests/testthat/_data/CLBR_IR100.csv | 48 Luminescence-1.1.1/Luminescence/tests/testthat/_data/CLBR_IR150.csv | 48 Luminescence-1.1.1/Luminescence/tests/testthat/_data/CLBR_IR225.csv | 48 Luminescence-1.1.1/Luminescence/tests/testthat/_data/CLBR_IR50.csv | 48 Luminescence-1.1.1/Luminescence/tests/testthat/setup.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_RLum.Analysis-class.R | 34 Luminescence-1.1.1/Luminescence/tests/testthat/test_RLum.Results-class.R | 14 Luminescence-1.1.1/Luminescence/tests/testthat/test_Risoe.BINfileData-class.R | 5 Luminescence-1.1.1/Luminescence/tests/testthat/test_Risoe.BINfileData2RLum.Analysis.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_Al2O3C_CrossTalk.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_Al2O3C_ITC.R | 39 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_Al2O3C_Measurement.R | 20 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_FadingMeasurement.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_IRSAR.RF.R | 8 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_SAR.CWOSL.R | 193 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_SAR.TL.R | 27 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_ThermochronometryData.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_analyse_baSAR.R | 13 Luminescence-1.1.1/Luminescence/tests/testthat/test_apply_CosmicRayRemoval.R | 31 Luminescence-1.1.1/Luminescence/tests/testthat/test_as_latex_table.R | 3 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_AliquotSize.R | 25 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_EED_Model.R | 7 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_FastRatio.R | 10 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_FiniteMixture.R | 71 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_FuchsLang2001.R | 12 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_HomogeneityTest.R | 17 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_Huntley2006.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_Lamothe2003.R | 60 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_MinDose.R | 32 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_OSLLxTxRatio.R | 4 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_Statistics.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_TLLxTxRatio.R | 75 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_ThermalLifetime.R | 15 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_WodaFuchs2008.R | 17 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_gSGC.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_calc_gSGC_feldspar.R | 9 Luminescence-1.1.1/Luminescence/tests/testthat/test_convert_CW2pX.R | 18 Luminescence-1.1.1/Luminescence/tests/testthat/test_convert_PSL2RisoeBINfiledata.R | 4 Luminescence-1.1.1/Luminescence/tests/testthat/test_convert_Second2Gray.R | 4 Luminescence-1.1.1/Luminescence/tests/testthat/test_convert_Wavelength2Energy.R | 7 Luminescence-1.1.1/Luminescence/tests/testthat/test_correct_PMTLinearity.R |only Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_CWCurve.R | 11 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_DoseResponseCurve.R | 65 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_EmissionSpectra.R | 5 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_IsothermalHolding.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_LMCurve.R | 12 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_OSLLifeTimes.R | 29 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_SurfaceExposure.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_fit_ThermalQuenching.R | 4 Luminescence-1.1.1/Luminescence/tests/testthat/test_github.R | 21 Luminescence-1.1.1/Luminescence/tests/testthat/test_internals.R | 130 Luminescence-1.1.1/Luminescence/tests/testthat/test_internals_Thermochronometry.R | 9 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_RLum.Analysis.R | 27 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_RLum.Data.Curve.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_RLum.Data.Spectrum.R | 10 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_RLum.R | 60 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_RLum.Results.R | 18 Luminescence-1.1.1/Luminescence/tests/testthat/test_merge_Risoe.BINfileData.R | 38 Luminescence-1.1.1/Luminescence/tests/testthat/test_metadata.R | 8 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_AbanicoPlot.R | 64 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_DRCSummary.R | 23 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_DRTResults.R | 7 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_DetPlot.R | 79 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_DoseResponseCurve.R | 24 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_FilterCombinations.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_Histogram.R | 5 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_KDE.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_MoranScatterplot.R | 3 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_NRt.R | 25 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_OSLAgeSummary.R | 34 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_RLum.Analysis.R | 18 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_RLum.Data.Curve.R | 35 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_RLum.Data.Spectrum.R | 26 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_RadialPlot.R | 5 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_Risoe.BINfileData.R | 28 Luminescence-1.1.1/Luminescence/tests/testthat/test_plot_ViolinPlot.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_read_BIN2R.R | 7 Luminescence-1.1.1/Luminescence/tests/testthat/test_read_XSYG2R.R | 12 Luminescence-1.1.1/Luminescence/tests/testthat/test_remove_SignalBackground.R | 9 Luminescence-1.1.1/Luminescence/tests/testthat/test_report_RLum.R | 9 Luminescence-1.1.1/Luminescence/tests/testthat/test_trim_RLum.Data.R | 30 Luminescence-1.1.1/Luminescence/tests/testthat/test_use_DRAC.R | 57 Luminescence-1.1.1/Luminescence/tests/testthat/test_utils_DRAC.R | 3 Luminescence-1.1.1/Luminescence/tests/testthat/test_verify_SingleGrainData.R | 2 Luminescence-1.1.1/Luminescence/tests/testthat/test_view.R | 6 Luminescence-1.1.1/Luminescence/tests/testthat/test_write_R2BIN.R | 10 Luminescence-1.1.1/Luminescence/tests/testthat/test_zzz.R | 10 394 files changed, 6437 insertions(+), 8227 deletions(-)
Title: Robust Estimators for Multi-Group and Spatial Data
Description: Estimation of robust estimators for multi-group and spatial data including the casewise robust Spatially Smoothed Minimum Regularized Determinant (ssMRCD) estimator and its usage for local outlier detection as described in Puchhammer and Filzmoser (2023) <doi:10.1080/10618600.2023.2277875> as well as for sparse robust PCA for multi-source data described in Puchhammer, Wilms and Filzmoser (2024) <doi:10.48550/arXiv.2407.16299>. Moreover, a cellwise robust multi-group Gaussian mixture model (MG-GMM) is implemented as described in Puchhammer, Wilms and Filzmoser (2024) <doi:10.48550/arXiv.2504.02547>. Included are also complementary visualization and parameter tuning tools.
Author: Patricia Puchhammer [aut, cre, cph],
Peter Filzmoser [aut]
Maintainer: Patricia Puchhammer <patricia.puchhammer@tuwien.ac.at>
Diff between ssMRCD versions 1.1.0 dated 2024-08-23 and 2.0.0 dated 2025-09-11
ssMRCD-1.1.0/ssMRCD/R/check_input.R |only ssMRCD-1.1.0/ssMRCD/R/general_helpers.R |only ssMRCD-1.1.0/ssMRCD/R/locOuts_methods.R |only ssMRCD-1.1.0/ssMRCD/R/select_parameters.R |only ssMRCD-1.1.0/ssMRCD/R/sparsePCA_ADMM.R |only ssMRCD-1.1.0/ssMRCD/R/sparsePCA_helpers.R |only ssMRCD-1.1.0/ssMRCD/R/sparsePCAloc.R |only ssMRCD-1.1.0/ssMRCD/R/sparsePCAloc_methods.R |only ssMRCD-1.1.0/ssMRCD/man/align_PC.Rd |only ssMRCD-1.1.0/ssMRCD/man/biplot.PCAloc.Rd |only ssMRCD-1.1.0/ssMRCD/man/contamination_random.Rd |only ssMRCD-1.1.0/ssMRCD/man/eval_objective.Rd |only ssMRCD-1.1.0/ssMRCD/man/explained_var.Rd |only ssMRCD-1.1.0/ssMRCD/man/local_outliers_ssMRCD.Rd |only ssMRCD-1.1.0/ssMRCD/man/parameter_tuning.Rd |only ssMRCD-1.1.0/ssMRCD/man/plot.PCAloc.Rd |only ssMRCD-1.1.0/ssMRCD/man/plot_loadings.Rd |only ssMRCD-1.1.0/ssMRCD/man/plot_score_distances.Rd |only ssMRCD-1.1.0/ssMRCD/man/plot_scores.Rd |only ssMRCD-1.1.0/ssMRCD/man/rescale_weights.Rd |only ssMRCD-1.1.0/ssMRCD/man/restructure_as_list.Rd |only ssMRCD-1.1.0/ssMRCD/man/scale_ssMRCD.Rd |only ssMRCD-1.1.0/ssMRCD/man/scores.OD.Rd |only ssMRCD-1.1.0/ssMRCD/man/scores.SD.Rd |only ssMRCD-1.1.0/ssMRCD/man/screeplot.PCAloc.Rd |only ssMRCD-1.1.0/ssMRCD/man/select_smoothing.Rd |only ssMRCD-1.1.0/ssMRCD/man/select_sparsity.Rd |only ssMRCD-1.1.0/ssMRCD/man/sparsePCAloc.Rd |only ssMRCD-1.1.0/ssMRCD/man/sparsity_entries.Rd |only ssMRCD-1.1.0/ssMRCD/man/sparsity_group.Rd |only ssMRCD-1.1.0/ssMRCD/man/sparsity_mixed.Rd |only ssMRCD-1.1.0/ssMRCD/man/sparsity_summary.Rd |only ssMRCD-1.1.0/ssMRCD/man/summary.PCAloc.Rd |only ssMRCD-1.1.0/ssMRCD/man/summary.locOuts.Rd |only ssMRCD-1.1.0/ssMRCD/man/summary.ssMRCD.Rd |only ssMRCD-2.0.0/ssMRCD/DESCRIPTION | 24 ssMRCD-2.0.0/ssMRCD/MD5 | 113 +-- ssMRCD-2.0.0/ssMRCD/NAMESPACE | 124 +-- ssMRCD-2.0.0/ssMRCD/R/RcppExports.R |only ssMRCD-2.0.0/ssMRCD/R/SRPCAMS.R |only ssMRCD-2.0.0/ssMRCD/R/SRPCAMS_helpers.R |only ssMRCD-2.0.0/ssMRCD/R/SRPCAMS_internal.R |only ssMRCD-2.0.0/ssMRCD/R/SRPCAMS_methods.R |only ssMRCD-2.0.0/ssMRCD/R/cellMGGMM.R |only ssMRCD-2.0.0/ssMRCD/R/locOuts.R | 451 ++++++++---- ssMRCD-2.0.0/ssMRCD/R/rcpp_compatibility.R |only ssMRCD-2.0.0/ssMRCD/R/ssMRCD.R | 839 +++++++++++++++++++++-- ssMRCD-2.0.0/ssMRCD/R/ssMRCD_helpers.R | 656 ++--------------- ssMRCD-2.0.0/ssMRCD/R/ssMRCD_methods.R | 721 +++++++++---------- ssMRCD-2.0.0/ssMRCD/build/partial.rdb |binary ssMRCD-2.0.0/ssMRCD/build/vignette.rds |binary ssMRCD-2.0.0/ssMRCD/inst/doc/SRPCAMS.R |only ssMRCD-2.0.0/ssMRCD/inst/doc/SRPCAMS.Rmd |only ssMRCD-2.0.0/ssMRCD/inst/doc/SRPCAMS.html |only ssMRCD-2.0.0/ssMRCD/inst/doc/cellMGGMM.R |only ssMRCD-2.0.0/ssMRCD/inst/doc/cellMGGMM.Rmd |only ssMRCD-2.0.0/ssMRCD/inst/doc/cellMGGMM.html |only ssMRCD-2.0.0/ssMRCD/inst/doc/ssMRCD.R | 202 +++-- ssMRCD-2.0.0/ssMRCD/inst/doc/ssMRCD.Rmd | 233 +++--- ssMRCD-2.0.0/ssMRCD/inst/doc/ssMRCD.html | 409 +++++------ ssMRCD-2.0.0/ssMRCD/man/RCOV.Rd |only ssMRCD-2.0.0/ssMRCD/man/align.Rd |only ssMRCD-2.0.0/ssMRCD/man/biplot.msPCA.Rd |only ssMRCD-2.0.0/ssMRCD/man/cellMGGMM.Rd |only ssMRCD-2.0.0/ssMRCD/man/cstep.Rd |only ssMRCD-2.0.0/ssMRCD/man/dist_cstep.Rd |only ssMRCD-2.0.0/ssMRCD/man/geo_weights.Rd | 4 ssMRCD-2.0.0/ssMRCD/man/groups_gridbased.Rd | 2 ssMRCD-2.0.0/ssMRCD/man/locOuts.Rd |only ssMRCD-2.0.0/ssMRCD/man/msPCA.Rd |only ssMRCD-2.0.0/ssMRCD/man/objective_init.Rd |only ssMRCD-2.0.0/ssMRCD/man/objective_matrix.Rd | 28 ssMRCD-2.0.0/ssMRCD/man/plot.locOuts.Rd | 117 +-- ssMRCD-2.0.0/ssMRCD/man/plot.msPCA.Rd |only ssMRCD-2.0.0/ssMRCD/man/plot.ssMRCD.Rd | 107 +- ssMRCD-2.0.0/ssMRCD/man/residuals.ssMRCD.Rd | 86 +- ssMRCD-2.0.0/ssMRCD/man/residuals_mggmm.Rd |only ssMRCD-2.0.0/ssMRCD/man/scale.ssMRCD.Rd |only ssMRCD-2.0.0/ssMRCD/man/scores.Rd | 48 - ssMRCD-2.0.0/ssMRCD/man/screeplot.msPCA.Rd |only ssMRCD-2.0.0/ssMRCD/man/ssMRCD.Rd | 225 +++--- ssMRCD-2.0.0/ssMRCD/man/summary.msPCA.Rd |only ssMRCD-2.0.0/ssMRCD/man/time_weights.Rd | 4 ssMRCD-2.0.0/ssMRCD/src |only ssMRCD-2.0.0/ssMRCD/tests/testthat/test-ssMRCD.R | 4 ssMRCD-2.0.0/ssMRCD/vignettes/SRPCAMS.Rmd |only ssMRCD-2.0.0/ssMRCD/vignettes/cellMGGMM.Rmd |only ssMRCD-2.0.0/ssMRCD/vignettes/ssMRCD.Rmd | 233 +++--- 88 files changed, 2592 insertions(+), 2038 deletions(-)
Title: R Interface for the GPlates Web Service and Desktop Application
Description: Query functions to the GPlates <https://www.gplates.org/> Desktop Application and the GPlates Web Service <https://gws.gplates.org/> allow users to reconstruct past positions of geographic entities based on user-selected rotation models without leaving the R running environment. The online method (GPlates Web Service) makes the rotation of static plates, coastlines, and a low number of geographic coordinates available using nothing but an internet connection. The offline method requires an external installation of the GPlates Desktop Application, but allows the efficient batch rotation of thousands of coordinates, Simple Features (sf) and Spatial (sp) objects with custom reconstruction trees and partitioning polygons. Examples of such plate tectonic models are accessible via the chronosphere <https://cran.r-project.org/package=chronosphere>. This R extension is developed under the umbrella of the DFG (Deutsche Forschungsgemeinschaft) Research Unit TERSANE2 (For 2332, [...truncated...]
Author: Adam T. Kocsis [cre, aut] ,
Nussaibah B. Raja [ctb] ,
Simon Williams [ctb] ,
Elizabeth M. Dowding [ctb] ,
Deutsche Forschungsgemeinschaft [fnd],
FAU GeoZentrum Nordbayern [fnd]
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between rgplates versions 0.6.0 dated 2025-04-25 and 0.6.1 dated 2025-09-11
DESCRIPTION | 21 ++++++++------- MD5 | 22 ++++++++-------- NAMESPACE | 1 NEWS.md | 14 +++++++++- R/front_end.R | 71 +++++++++++++++++++++++++++++++++-------------------- R/offline.R | 8 ++--- R/online.R | 2 - R/utility.R | 27 +++++++++++--------- R/zzz.R | 1 data/gws.RData |binary man/mapedge.Rd | 5 ++- man/reconstruct.Rd | 47 +++++++++++++++++++++++------------ 12 files changed, 140 insertions(+), 79 deletions(-)
Title: Prediction and Interpretation in Decision Trees for
Classification and Regression
Description: Optimization of conditional inference trees from the package 'party'
for classification and regression.
For optimization, the model space is searched for the best tree on the full sample by
means of repeated subsampling. Restrictions are allowed so that only trees are accepted
which do not include pre-specified uninterpretable split results (cf. Weihs & Buschfeld, 2021a).
The function PrInDT() represents the basic resampling loop for 2-class classification (cf. Weihs
& Buschfeld, 2021a). The function RePrInDT() (repeated PrInDT()) allows for repeated
applications of PrInDT() for different percentages of the observations of the large and the
small classes (cf. Weihs & Buschfeld, 2021c). The function NesPrInDT() (nested PrInDT())
allows for an extra layer of subsampling for a specific factor variable (cf. Weihs & Buschfeld,
2021b). The functions PrInDTMulev() and PrInDTMulab() deal with multilevel and multilabel
classification. In addition to these PrInDT() variants for c [...truncated...]
Author: Claus Weihs [aut, cre],
Sarah Buschfeld [aut],
Niklas Nitsch [ctb]
Maintainer: Claus Weihs <claus.weihs@tu-dortmund.de>
Diff between PrInDT versions 2.0.1 dated 2025-08-25 and 2.0.2 dated 2025-09-11
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/PrInDTCstruc.R | 20 +++++++++++++++----- R/PrInDTRstruc.R | 21 +++++++++++++++------ R/SimMixPrInDT.R | 51 +++++++++++++++++++++++++++++++++++++++------------ R/SimRPrInDT.R | 18 +++++++++++++++--- man/PrInDTCstruc.Rd | 5 +++-- man/PrInDTRstruc.Rd | 5 +++-- man/SimMixPrInDT.Rd | 4 ++-- man/SimRPrInDT.Rd | 6 +++--- 10 files changed, 107 insertions(+), 47 deletions(-)
Title: A Procedure for Multicollinearity Testing using Bootstrap
Description: Functions for detecting multicollinearity. This test gives statistical support to two of the most famous methods for detecting multicollinearity in applied work: Klein’s rule and Variance Inflation Factor (VIF). See the URL for the papers associated with this package, as for instance, Morales-Oñate and Morales-Oñate (2015) <doi:10.33333/rp.vol51n2.05>.
Author: Victor Morales-Onate [aut, cre] ,
Bolivar Morales-Onate [aut]
Maintainer: Victor Morales-Onate <vmorales.ppb@gmail.com>
Diff between MTest versions 1.0.3 dated 2025-09-10 and 1.0.4 dated 2025-09-11
DESCRIPTION | 8 - MD5 | 12 - NAMESPACE | 1 R/MTest.R | 331 +++++++++++++++++++++++++++++++++----------------- R/pairwiseKStest.R | 143 +++++++++++++++++---- man/MTest.Rd | 138 +++++++++++++------- man/pairwiseKStest.Rd | 101 +++++++++++---- 7 files changed, 511 insertions(+), 223 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre] ,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.2.0 dated 2025-02-12 and 4.3 dated 2025-09-11
irace-4.2.0/irace/inst/examples/matlab/Main.m |only irace-4.2.0/irace/inst/examples/matlab/instances.txt |only irace-4.2.0/irace/inst/examples/matlab/scenario.txt |only irace-4.3/irace/DESCRIPTION | 10 irace-4.3/irace/MD5 | 76 +++--- irace-4.3/irace/NEWS.md | 24 + irace-4.3/irace/R/aaa.R | 2 irace-4.3/irace/R/ablation.R | 12 irace-4.3/irace/R/cluster.R | 12 irace-4.3/irace/R/generation.R | 7 irace-4.3/irace/R/irace-options.R | 4 irace-4.3/irace/R/parameters.R | 23 - irace-4.3/irace/R/race-wrapper.R | 5 irace-4.3/irace/R/race_state.R | 4 irace-4.3/irace/R/readConfiguration.R | 20 + irace-4.3/irace/R/readParameters.R | 29 -- irace-4.3/irace/R/scenario.R | 4 irace-4.3/irace/R/version.R | 2 irace-4.3/irace/README.md | 22 - irace-4.3/irace/build/partial.rdb |binary irace-4.3/irace/build/vignette.rds |binary irace-4.3/irace/inst/doc/irace-package.R | 170 +++++++------- irace-4.3/irace/inst/doc/irace-package.Rnw | 16 - irace-4.3/irace/inst/doc/irace-package.pdf |binary irace-4.3/irace/inst/examples/matlab/RUN.m |only irace-4.3/irace/inst/examples/matlab/parameters.txt | 4 irace-4.3/irace/inst/examples/matlab/target-runner |only irace-4.3/irace/inst/examples/matlabr |only irace-4.3/irace/inst/templates/scenario.txt.tmpl | 6 irace-4.3/irace/inst/templates/target-runner.tmpl | 21 - irace-4.3/irace/man/ablation.Rd | 2 irace-4.3/irace/man/defaultScenario.Rd | 4 irace-4.3/irace/man/irace_cmdline.Rd | 10 irace-4.3/irace/tests/testthat/helper-common.R | 11 irace-4.3/irace/tests/testthat/test-bug-87.R |only irace-4.3/irace/tests/testthat/test-readconfs.R | 77 ++++-- irace-4.3/irace/tests/testthat/test-recovery.R | 8 irace-4.3/irace/tests/testthat/test-target-runner-dummy.R | 8 irace-4.3/irace/tests/testthat/test-targeteval.R | 10 irace-4.3/irace/vignettes/irace-package.Rnw | 16 - irace-4.3/irace/vignettes/section/irace-options.Rnw | 4 41 files changed, 336 insertions(+), 287 deletions(-)
Title: Spatial Visualization with ggplot2
Description: A collection of functions to visualize spatial data and models
on top of static maps from various online sources (e.g Google Maps and Stamen
Maps). It includes tools common to those tasks, including functions for
geolocation and routing.
Author: David Kahle [aut, cre] ,
Hadley Wickham [aut] ,
Scott Jackson [aut],
Mikko Korpela [ctb]
Maintainer: David Kahle <david@kahle.io>
Diff between ggmap versions 4.0.1 dated 2025-04-07 and 4.0.2 dated 2025-09-11
DESCRIPTION | 10 +++---- MD5 | 26 ++++++++++---------- NEWS.md | 9 +++++++ R/inset.R | 47 +++++++++++++++++++++++++------------ README.md | 14 +++++------ man/geom_leg.Rd | 8 +++--- tools/README-faceting-1.png |binary tools/README-ggmap-1.png |binary tools/README-ggmap-layers-1.png |binary tools/README-ggmap-patchwork-1.png |binary tools/README-google_maps-1.png |binary tools/README-maptypes-1.png |binary tools/README-qmplot-1.png |binary tools/README-route_trek-1.png |binary 14 files changed, 71 insertions(+), 43 deletions(-)
Title: Regression Models for Bounded Continuous and Discrete Responses
Description: Functions to fit regression models for bounded continuous and discrete responses. In case of bounded continuous responses (e.g., proportions and rates), available models are the flexible beta (Migliorati, S., Di Brisco, A. M., Ongaro, A. (2018) <doi:10.1214/17-BA1079>), the variance-inflated beta (Di Brisco, A. M., Migliorati, S., Ongaro, A. (2020) <doi:10.1177/1471082X18821213>), the beta (Ferrari, S.L.P., Cribari-Neto, F. (2004) <doi:10.1080/0266476042000214501>), and their augmented versions to handle the presence of zero/one values (Di Brisco, A. M., Migliorati, S. (2020) <doi:10.1002/sim.8406>) are implemented. In case of bounded discrete responses (e.g., bounded counts, such as the number of successes in n trials), available models are the flexible beta-binomial (Ascari, R., Migliorati, S. (2021) <doi:10.1002/sim.9005>), the beta-binomial, and the binomial are implemented. Inference is dealt with a Bayesian approach based on the Hamiltonian Monte C [...truncated...]
Author: Roberto Ascari [aut, cre],
Agnese M. Di Brisco [aut],
Sonia Migliorati [aut],
Andrea Ongaro [aut]
Maintainer: Roberto Ascari <roberto.ascari@unimib.it>
Diff between FlexReg versions 1.4 dated 2025-09-09 and 1.4.1 dated 2025-09-11
DESCRIPTION | 6 MD5 | 6 R/convergence.plot.R | 12 - R/posterior_predictive.R | 544 +++++++++++++++++++++++------------------------ 4 files changed, 287 insertions(+), 281 deletions(-)
Title: SM/LM EGARCH & GARCH, VaR/ES Backtesting & Dual LM Extensions
Description: Implement and fit a variety of short-memory (SM) and long-memory
(LM) models from a very broad family of exponential generalized autoregressive
conditional heteroskedasticity (EGARCH) models, such as a MEGARCH (modified
EGARCH), FIEGARCH (fractionally integrated EGARCH), FIMLog-GARCH (fractionally
integrated modulus Log-GARCH), and more. The FIMLog-GARCH as part of the
EGARCH family is discussed in Feng et al. (2023)
<https://econpapers.repec.org/paper/pdnciepap/156.htm>. For convenience and
the purpose of comparison, a variety of other popular SM and LM GARCH-type
models, like an APARCH model, a fractionally integrated
APARCH (FIAPARCH) model, standard GARCH and fractionally integrated GARCH
(FIGARCH) models, GJR-GARCH and FIGJR-GARCH models, TGARCH and FITGARCH
models, are implemented as well as dual models with simultaneous modelling of
the mean, including dual long-memory models with a fractionally integrated
autoregressive moving average (FARIMA) model in the mean and a long [...truncated...]
Author: Dominik Schulz [aut, cre] ,
Yuanhua Feng [aut] ,
Christian Peitz [aut] ),
Oliver Kojo Ayensu [aut] ,
Thomas Gries [ctb] ,
Sikandar Siddiqui [ctb] ,
Shujie Li [ctb]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between fEGarch versions 1.0.1 dated 2025-06-20 and 1.0.2 dated 2025-09-11
DESCRIPTION | 6 - MD5 | 61 ++++++------- NEWS.md | 15 +++ R/fitting-function.R | 2 R/general_garch_fitting.R | 10 -- R/nonparametric-step.R | 4 R/setup-estim.R | 4 README.md | 24 ++--- man/SP500.Rd | 50 +++++----- man/UKinflation.Rd | 52 +++++------ man/accessor_methods_distr_est.Rd | 94 ++++++++++---------- man/autoplot-fEGarch_risk-method.Rd | 72 +++++++-------- man/backtest-generics.Rd | 82 ++++++++--------- man/fEGarch_fit-egarch_type_spec-method.Rd | 124 +++++++++++++------------- man/fEGarch_fit-loggarch_type_spec-method.Rd | 124 +++++++++++++------------- man/fEGarch_fit.Rd | 122 +++++++++++++------------- man/fit-test-generics.Rd | 126 +++++++++++++-------------- man/fit_test_suite-fEGarch_fit-method.Rd | 102 ++++++++++----------- man/fitted.Rd | 72 +++++++-------- man/forecasting-generics.Rd | 64 ++++++------- man/forecasting-model-methods.Rd | 114 ++++++++++++------------ man/loss_functions.Rd | 46 ++++----- man/mean_spec_methods.Rd | 96 ++++++++++---------- man/nonpar-generics.Rd | 84 +++++++++--------- man/plot-fEGarch_fit-ANY-method.Rd | 118 ++++++++++++------------- man/plot-fEGarch_risk-ANY-method.Rd | 78 ++++++++-------- man/plot.Rd | 42 ++++----- man/residuals.Rd | 66 +++++++------- man/sigma.Rd | 72 +++++++-------- src/Makevars | 2 src/Makevars.win | 2 tests/testthat/test-nonpar.R |only 32 files changed, 970 insertions(+), 960 deletions(-)
Title: Isolate Functions for Remote Execution
Description: Sending functions to remote processes can be wasteful of
resources because they carry their environments with them. With the
carrier package, it is easy to create functions that are isolated from
their environment. These isolated functions, also called crates, print
at the console with their total size and can be easily tested locally
before being sent to a remote.
Author: Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between carrier versions 0.2.0 dated 2025-06-23 and 0.3.0.4 dated 2025-09-11
DESCRIPTION | 10 ++--- MD5 | 14 +++---- NEWS.md | 74 +++++++++++++++++++++++++++++++++++++++++ R/crate.R | 16 ++++++++ man/carrier-package.Rd | 2 - man/crate.Rd | 6 +++ tests/testthat/_snaps/crate.md | 8 ++++ tests/testthat/test-crate.R | 41 ++++++++++++++++++++++ 8 files changed, 158 insertions(+), 13 deletions(-)
Title: Compress and Decompress Data Using the 'BLOSC' Library
Description: Arrays of structured data types can require large volumes of disk
space to store. 'Blosc' is a library that provides a fast and efficient way
to compress such data. It is often applied in storage of n-dimensional
arrays, such as in the case of the geo-spatial 'zarr' file format. This
package can be used to compress and decompress data using 'Blosc'.
Author: Pepijn de Vries [aut, cre] ,
Chris Maiwald [cph],
Alexander Gessler [cph]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between blosc versions 0.0.6 dated 2025-09-01 and 0.1.1 dated 2025-09-11
blosc-0.0.6/blosc/configure.win |only blosc-0.1.1/blosc/DESCRIPTION | 10 blosc-0.1.1/blosc/MD5 | 42 blosc-0.1.1/blosc/NEWS.md | 16 blosc-0.1.1/blosc/R/cpp11.R | 4 blosc-0.1.1/blosc/R/r2dtype.R | 6 blosc-0.1.1/blosc/README.md | 10 blosc-0.1.1/blosc/cleanup | 4 blosc-0.1.1/blosc/configure | 4983 ++++++++++++++- blosc-0.1.1/blosc/configure.ac |only blosc-0.1.1/blosc/inst/doc/dtypes.R | 3 blosc-0.1.1/blosc/inst/doc/dtypes.Rmd | 334 - blosc-0.1.1/blosc/inst/doc/dtypes.html | 21 blosc-0.1.1/blosc/man/dtype.Rd | 6 blosc-0.1.1/blosc/src/Makevars.in | 4 blosc-0.1.1/blosc/src/cpp11.cpp | 8 blosc-0.1.1/blosc/src/dtype.cpp | 218 blosc-0.1.1/blosc/tests/testthat.R | 2 blosc-0.1.1/blosc/tests/testthat/test_encode.R | 21 blosc-0.1.1/blosc/tests/testthat/testdata/testdata.rdata |binary blosc-0.1.1/blosc/tools |only blosc-0.1.1/blosc/vignettes/dtypes.Rmd | 334 - 22 files changed, 5557 insertions(+), 469 deletions(-)
Title: Latent Position and Cluster Models for Statistical Networks
Description: Fit and simulate latent position and cluster models for statistical networks. See Krivitsky and Handcock (2008) <doi:10.18637/jss.v024.i05> and Krivitsky, Handcock, Raftery, and Hoff (2009) <doi:10.1016/j.socnet.2009.04.001>.
Author: Pavel N. Krivitsky [aut, cre] ,
Mark S. Handcock [aut],
Susan M. Shortreed [ctb],
Jeremy Tantrum [ctb],
Peter D. Hoff [ctb],
Li Wang [ctb],
Kirk Li [ctb],
Jake Fisher [ctb],
Jordan T. Bates [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between latentnet versions 2.11.0 dated 2024-02-19 and 2.12.0 dated 2025-09-11
latentnet-2.11.0/latentnet/build/latentnet.pdf |only latentnet-2.12.0/latentnet/DESCRIPTION | 23 - latentnet-2.12.0/latentnet/LICENSE | 2 latentnet-2.12.0/latentnet/MD5 | 205 +++++----- latentnet-2.12.0/latentnet/NAMESPACE | 1 latentnet-2.12.0/latentnet/NEWS | 8 latentnet-2.12.0/latentnet/R/InitErgmm.fixed.R | 93 +--- latentnet-2.12.0/latentnet/R/InitErgmm.latent.R | 10 latentnet-2.12.0/latentnet/R/InitErgmm.random.R | 12 latentnet-2.12.0/latentnet/R/P.alloc.R | 10 latentnet-2.12.0/latentnet/R/bayesmbc.MCMC.C.R | 10 latentnet-2.12.0/latentnet/R/bayesmbc.R | 10 latentnet-2.12.0/latentnet/R/ergmm.MCMC.C.R | 10 latentnet-2.12.0/latentnet/R/ergmm.R | 22 - latentnet-2.12.0/latentnet/R/ergmm.defaults.R | 10 latentnet-2.12.0/latentnet/R/ergmm.draw.utils.R | 10 latentnet-2.12.0/latentnet/R/ergmm.families.R | 56 ++ latentnet-2.12.0/latentnet/R/ergmm.geodesicmatrix.R | 10 latentnet-2.12.0/latentnet/R/ergmm.get.model.R | 10 latentnet-2.12.0/latentnet/R/ergmm.initvals.R | 10 latentnet-2.12.0/latentnet/R/ergmm.latent.effects.R | 10 latentnet-2.12.0/latentnet/R/ergmm.par.R | 10 latentnet-2.12.0/latentnet/R/ergmm.permutation.R | 10 latentnet-2.12.0/latentnet/R/ergmm.probs.R | 10 latentnet-2.12.0/latentnet/R/ergmm.statseval.R | 10 latentnet-2.12.0/latentnet/R/ergmm.tuner.R | 10 latentnet-2.12.0/latentnet/R/gof.ergmm.R | 10 latentnet-2.12.0/latentnet/R/label.switching.R | 10 latentnet-2.12.0/latentnet/R/latent.R | 10 latentnet-2.12.0/latentnet/R/latentnet-package.R | 72 +-- latentnet-2.12.0/latentnet/R/mcmc.diagnostics.ergmm.R | 10 latentnet-2.12.0/latentnet/R/merge.ergmm.R | 10 latentnet-2.12.0/latentnet/R/plot.ergmm.R | 10 latentnet-2.12.0/latentnet/R/predict.ergmm.R | 10 latentnet-2.12.0/latentnet/R/print.ergmm.R | 10 latentnet-2.12.0/latentnet/R/print.ergmm.model.R | 10 latentnet-2.12.0/latentnet/R/procrustes.R | 10 latentnet-2.12.0/latentnet/R/simulate.ergmm.R | 12 latentnet-2.12.0/latentnet/R/summary.ergmm.R | 15 latentnet-2.12.0/latentnet/R/utilities.R | 10 latentnet-2.12.0/latentnet/R/zzz.R | 10 latentnet-2.12.0/latentnet/build/partial.rdb |only latentnet-2.12.0/latentnet/build/stage23.rdb |binary latentnet-2.12.0/latentnet/data/davis.RData |binary latentnet-2.12.0/latentnet/inst/CITATION | 4 latentnet-2.12.0/latentnet/man/Intercept-ergmTerm-49126971.Rd | 7 latentnet-2.12.0/latentnet/man/bilinear-ergmTerm-3e739bd7.Rd | 4 latentnet-2.12.0/latentnet/man/davis.Rd | 2 latentnet-2.12.0/latentnet/man/ergmm-class.Rd | 18 latentnet-2.12.0/latentnet/man/ergmm-families.Rd | 14 latentnet-2.12.0/latentnet/man/ergmm.Rd | 16 latentnet-2.12.0/latentnet/man/ergmm.prior.Rd | 2 latentnet-2.12.0/latentnet/man/euclidean-ergmTerm-6ab46c25.Rd | 4 latentnet-2.12.0/latentnet/man/euclidean2-ergmTerm-939e9c32.Rd | 4 latentnet-2.12.0/latentnet/man/latentcov-ergmTerm-fba43306.Rd | 53 +- latentnet-2.12.0/latentnet/man/latentnet-package.Rd | 22 - 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Title: Configuration of Jupiter's Four Largest Satellites
Description: Calculate and plot the configuration of Jupiter's four largest
satellites (known as Galilean satellites) for a given date and time
(UTC - Coordinated Universal Time).
The galsat() function returns numerical values of the satellites’ positions.
x – the apparent rectangular coordinate of the satellite with respect to the
center of Jupiter’s disk in the equatorial plane in the units of Jupiter’s
equatorial radius; X is positive toward the west,
y – the apparent rectangular coordinate of the satellite with respect to the
center of Jupiter’s disk from the equatorial plane in the units of Jupiter’s
equatorial radius; Y is positive toward the north.
For more details see Meeus (1988, ISBN 0-943396-22-0) "Astronomical Formulae
for Calculators".
The function delta_t() returns the value of delta-T in units of seconds.
Author: Lech Jaszowski [aut, cre, cph]
Maintainer: Lech Jaszowski <lech.jaszowski@interia.pl>
Diff between galisats versions 1.0.1 dated 2025-07-21 and 2.0.2 dated 2025-09-11
DESCRIPTION | 13 +-- MD5 | 17 ++-- NAMESPACE | 1 NEWS.md | 14 +++ R/delta_t.R |only R/galilean_satellites.R | 99 ++++++++++++++++++++++----- README.md | 143 ++++++++++++++++++--------------------- man/delta_t.Rd |only man/figures/README-example-1.png |binary man/figures/logo.png |only man/galsat.Rd | 17 ++-- 11 files changed, 191 insertions(+), 113 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Description: A set of extensions for the 'ergm' package to fit weighted networks whose edge weights are counts. See Krivitsky (2012) <doi:10.1214/12-EJS696> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Pavel N. Krivitsky [aut, cre] ,
Mark S. Handcock [ctb],
David R. Hunter [ctb],
Joyce Cheng [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.count versions 4.1.2 dated 2024-06-16 and 4.1.3 dated 2025-09-11
DESCRIPTION | 19 - LICENSE | 2 MD5 | 68 +++--- R/InitErgmReference.R | 10 R/InitWtErgmProposal.R | 10 R/InitWtErgmTerm.R | 10 R/data.R | 47 ++-- R/ergm.count-package.R | 26 +- R/zzz.R | 10 build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/CITATION | 11 - inst/NEWS.Rd | 28 ++ inst/REFERENCES.bib | 9 inst/doc/valued.R | 6 inst/doc/valued.html | 331 ++++++++++++++++---------------- man/Binomial-ergmReference-cdff43a4.Rd | 4 man/CMB-ergmTerm-5a51afe9.Rd | 2 man/CMP-ergmTerm-4d501174.Rd | 2 man/Disc-ergmProposal-b6c6e5ca.Rd | 4 man/DiscTNT-ergmProposal-c3c2e8cb.Rd | 6 man/Geometric-ergmReference-1ee5c5ac.Rd | 6 man/Poisson-ergmReference-40df5ec8.Rd | 4 man/ZIPoisson-ergmProposal-bba55a81.Rd | 2 man/ergm.count-package.Rd | 26 +- man/zach.Rd | 37 +-- src/include_stubs.c | 10 src/init.c | 10 src/wtMHproposals.c | 10 src/wtchangestats.c | 10 src/wtchangestats.h | 10 tests/testthat.R | 10 tests/testthat/test-valued-fit.R | 6 tests/testthat/test-valued-sim.R | 6 35 files changed, 389 insertions(+), 363 deletions(-)
Title: Analysis of Data from a Crossover Design with GEE
Description: Analyze data from a crossover design using generalized estimation equations (GEE), including carryover effects and various correlation structures based on the Kronecker product. It contains functions for semiparametric estimates of carry-over effects in repeated measures and allows estimation of complex carry-over effects. Related work includes: a) Cruz N.A., Melo O.O., Martinez C.A. (2023). "CrossCarry: An R package for the analysis of data from a crossover design with GEE". <doi:10.48550/arXiv.2304.02440>. b) Cruz N.A., Melo O.O., Martinez C.A. (2023). "A correlation structure for the analysis of Gaussian and non-Gaussian responses in crossover experimental designs with repeated measures". <doi:10.1007/s00362-022-01391-z> and c) Cruz N.A., Melo O.O., Martinez C.A. (2023). "Semiparametric generalized estimating equations for repeated measurements in cross-over designs". <doi:10.1177/09622802231158736>.
Author: Nelson Alirio Cruz Gutierrez [aut, cre, cph],
Oscar Orlando Melo [aut],
Carlos Alberto Martinez [aut],
Ricardo Alberich Marti [aut]
Maintainer: Nelson Alirio Cruz Gutierrez <nelson-alirio.cruz@uib.es>
Diff between CrossCarry versions 0.5.0 dated 2025-06-24 and 1.0.0 dated 2025-09-11
DESCRIPTION | 13 ++++++++----- MD5 | 23 ++++++++++++++--------- R/CrossGEE.R | 9 ++++++--- R/CrossGEEKron.R | 15 +++++++++------ R/CrossGEESP.R | 10 +++++++--- R/createCarry.R | 8 +++++--- man/CrossGEE.Rd | 8 ++++---- man/CrossGEEKron.Rd | 16 +++++++--------- man/CrossGEESP.Rd | 19 ++++++++++--------- man/createCarry.Rd | 8 ++++---- tests |only 11 files changed, 74 insertions(+), 55 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics, based on "The
Grammar of Graphics". You provide the data, tell 'ggplot2' how to map
variables to aesthetics, what graphical primitives to use, and it
takes care of the details.
Author: Hadley Wickham [aut] ,
Winston Chang [aut] ,
Lionel Henry [aut],
Thomas Lin Pedersen [aut, cre] ,
Kohske Takahashi [aut],
Claus Wilke [aut] ,
Kara Woo [aut] ,
Hiroaki Yutani [aut] ,
Dewey Dunnington [aut] ,
Teun van den Brand [aut] ,
Posit, PBC [cph, [...truncated...]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ggplot2 versions 3.5.2 dated 2025-04-09 and 4.0.0 dated 2025-09-11
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ggplot2-4.0.0/ggplot2/tests/testthat/test-annotate.R | 37 ggplot2-4.0.0/ggplot2/tests/testthat/test-build.R | 12 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-.R | 73 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-cartesian.R | 19 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-flip.R | 7 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-map.R | 1 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-polar.R | 96 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-train.R | 8 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord-transform.R | 92 ggplot2-4.0.0/ggplot2/tests/testthat/test-coord_sf.R | 121 ggplot2-4.0.0/ggplot2/tests/testthat/test-empty-data.R | 56 ggplot2-4.0.0/ggplot2/tests/testthat/test-facet-.R | 70 ggplot2-4.0.0/ggplot2/tests/testthat/test-facet-labels.R | 43 ggplot2-4.0.0/ggplot2/tests/testthat/test-facet-layout.R | 84 ggplot2-4.0.0/ggplot2/tests/testthat/test-facet-map.R | 67 ggplot2-4.0.0/ggplot2/tests/testthat/test-facet-strips.R | 76 ggplot2-4.0.0/ggplot2/tests/testthat/test-fortify.R | 37 ggplot2-4.0.0/ggplot2/tests/testthat/test-function-args.R | 69 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-.R | 45 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-bar.R | 10 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-boxplot.R | 50 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-col.R | 21 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-curve.R |only ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-dotplot.R | 102 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-errorbar.R |only ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-freqpoly.R | 2 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-hex.R | 6 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-hline-vline-abline.R | 19 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-label.R | 15 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-map.R | 5 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-path.R | 17 ggplot2-4.0.0/ggplot2/tests/testthat/test-geom-polygon.R | 6 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ggplot2-4.0.0/ggplot2/tests/testthat/test-qplot.R | 19 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-binned.R | 16 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-brewer.R | 4 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-colour.R |only ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-date.R | 52 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-discrete.R | 101 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-expansion.R | 29 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-gradient.R | 7 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-hue.R | 3 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-manual.R | 42 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale-type.R | 4 ggplot2-4.0.0/ggplot2/tests/testthat/test-scale_date.R | 15 ggplot2-4.0.0/ggplot2/tests/testthat/test-scales-breaks-labels.R | 150 ggplot2-4.0.0/ggplot2/tests/testthat/test-scales.R | 263 - ggplot2-4.0.0/ggplot2/tests/testthat/test-sec-axis.R | 77 ggplot2-4.0.0/ggplot2/tests/testthat/test-stat-align.R | 52 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ggplot2-4.0.0/ggplot2/tests/testthat/test-stats.R | 42 ggplot2-4.0.0/ggplot2/tests/testthat/test-theme.R | 522 ++- ggplot2-4.0.0/ggplot2/tests/testthat/test-utilities-break.R |only ggplot2-4.0.0/ggplot2/tests/testthat/test-utilities-checks.R | 10 ggplot2-4.0.0/ggplot2/tests/testthat/test-utilities.R | 70 ggplot2-4.0.0/ggplot2/tests/testthat/test-viridis.R | 6 ggplot2-4.0.0/ggplot2/vignettes/extending-ggplot2.Rmd | 197 - ggplot2-4.0.0/ggplot2/vignettes/ggplot2-in-packages.Rmd | 28 ggplot2-4.0.0/ggplot2/vignettes/ggplot2-specs.Rmd | 208 - ggplot2-4.0.0/ggplot2/vignettes/ggplot2.Rmd | 54 698 files changed, 23647 insertions(+), 15011 deletions(-)
Title: Fairness Evaluation Metrics with Confidence Intervals for Binary
Protected Attributes
Description: A collection of functions for computing fairness metrics for machine learning and statistical models, including confidence intervals for each metric. The package supports the evaluation of group-level fairness criterion commonly used in fairness research, particularly in healthcare for binary protected attributes. It is based on the overview of fairness in machine learning written by Gao et al (2024) <doi:10.48550/arXiv.2406.09307>.
Author: Jianhui Gao [aut] ,
Benjamin Smith [aut, cre] ,
Benson Chou [aut] ,
Jessica Gronsbell [aut]
Maintainer: Benjamin Smith <benyamin.smith@mail.utoronto.ca>
Diff between fairmetrics versions 1.0.5 dated 2025-09-05 and 1.0.6 dated 2025-09-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/get_fairness_metrics.R | 2 +- inst/doc/fairmetrics.html | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
Description: A set of extensions for the 'ergm' package to fit weighted networks whose edge weights are ranks. See Krivitsky and Butts (2017) <doi:10.1177/0081175017692623> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Pavel N. Krivitsky [aut, cre] ,
Carter T. Butts [ctb],
Mark S. Handcock [ctb],
David R. Hunter [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.rank versions 4.1.1 dated 2024-06-16 and 4.1.2 dated 2025-09-11
DESCRIPTION | 17 ++++--- LICENSE | 2 MD5 | 62 ++++++++++++++-------------- R/InitErgmReference.R | 10 ++-- R/InitWtErgmProposal.R | 10 ++-- R/InitWtErgmTerm_rank.R | 56 +++++++++++-------------- R/data.R | 14 +++--- R/ergm.rank-package.R | 49 +++++++++++----------- R/zzz.R | 10 ++-- build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/CITATION | 11 ++-- inst/NEWS.Rd | 39 +++++++++++++++-- inst/REFERENCES.bib | 2 inst/doc/ordinal.R | 2 inst/doc/ordinal.html | 29 +++++-------- man/AlterSwap-ergmProposal-7e827ae4.Rd | 2 man/CompleteOrder-ergmReference-f40141c3.Rd | 2 man/ergm.rank-package.Rd | 35 +++++++-------- man/newcomb.Rd | 4 - man/rankdeference-ergmTerm-73181c43.Rd | 2 man/rankedgecov-ergmTerm-5905bc22.Rd | 25 +++++++---- man/rankinconsistency-ergmTerm-b232ab56.Rd | 24 ++++++++-- man/ranknodeicov-ergmTerm-856bed59.Rd | 2 man/ranknonconformity-ergmTerm-a4593778.Rd | 2 src/include_stubs.c | 10 ++-- src/init.c | 10 ++-- src/wtMHproposals.c | 10 ++-- src/wtchangestat_rank.h | 10 ++-- src/wtchangestats_rank.c | 10 ++-- tests/termTests_rank.R | 10 ++-- 32 files changed, 256 insertions(+), 215 deletions(-)
Title: Access Chilean Data via APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including
'FINDIC API', 'REST Countries API', 'World Bank API', and 'Nager.Date',
retrieving real-time or historical data related to Chile such as financial indicators,
holidays, international demographic and geopolitical indicators, and more.
Additionally, the package includes curated datasets related to Chile, covering topics
such as human rights violations during the Pinochet regime, electoral data, census samples,
health surveys, seismic events, territorial codes, and environmental measurements.
The package supports research and analysis focused on Chile by integrating open APIs with
high-quality datasets from multiple domains. For more information on the APIs, see:
'FINDIC' <https://findic.cl/>,
'REST Countries' <https://restcountries.com/>,
'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>,
and 'Nager.Date' <https://date.nager.at/Api>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between ChileDataAPI versions 0.1.0 dated 2025-07-16 and 0.2.0 dated 2025-09-11
ChileDataAPI-0.1.0/ChileDataAPI/R/get_country_info.R |only ChileDataAPI-0.1.0/ChileDataAPI/man/get_country_info.Rd |only ChileDataAPI-0.1.0/ChileDataAPI/tests/testthat/test-get_country_info.R |only ChileDataAPI-0.2.0/ChileDataAPI/DESCRIPTION | 30 - ChileDataAPI-0.2.0/ChileDataAPI/MD5 | 113 +++- ChileDataAPI-0.2.0/ChileDataAPI/NAMESPACE | 19 ChileDataAPI-0.2.0/ChileDataAPI/NEWS.md |only ChileDataAPI-0.2.0/ChileDataAPI/R/chiledataapi-package.R | 4 ChileDataAPI-0.2.0/ChileDataAPI/R/data-documentation.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_bitcoin.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_child_mortality.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_copper_pound.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_cpi.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_dollar.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_energy_use.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_euro.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_gdp.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_holidays.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_hospital_beds.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_ipsa.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_life_expectancy.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_literacy_rate.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_population.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_uf.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_unemployment.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_utm.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_chile_yen.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/R/get_country_info_cl.R |only ChileDataAPI-0.2.0/ChileDataAPI/R/utils.R | 37 + ChileDataAPI-0.2.0/ChileDataAPI/R/view_datasets_ChileDataAPI.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/README.md | 33 + ChileDataAPI-0.2.0/ChileDataAPI/inst/CITATION | 2 ChileDataAPI-0.2.0/ChileDataAPI/inst/doc/ChileDataAPI_vignette.R | 15 ChileDataAPI-0.2.0/ChileDataAPI/inst/doc/ChileDataAPI_vignette.Rmd | 75 ++- ChileDataAPI-0.2.0/ChileDataAPI/inst/doc/ChileDataAPI_vignette.html | 234 ++++++---- ChileDataAPI-0.2.0/ChileDataAPI/inst/licenses/LICENSE.md | 20 ChileDataAPI-0.2.0/ChileDataAPI/man/ChileDataAPI.Rd | 2 ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_child_mortality.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_cpi.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_energy_use.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_gdp.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_holidays.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_hospital_beds.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_life_expectancy.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_literacy_rate.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_population.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_chile_unemployment.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/man/get_country_info_cl.Rd |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-census_chile_2017_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-chile_earthquakes_tbl_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-chile_election_2021_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-chile_health_survey_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-chile_plebiscite_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_bitcoin.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_child_mortality.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_copper_pound.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_cpi.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_dollar.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_energy_use.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_euro.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_gdp.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_holidays.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_hospital_beds.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_ipsa.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_life_expectancy.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_literacy_rate.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_population.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_uf.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_unemployment.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_utm.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_chile_yen.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-get_country_info_cl.R |only ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-malleco_tree_rings_ts.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-territorial_codes_tbl_df.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/tests/testthat/test-view_datasets_ChileDataAPI.R | 2 ChileDataAPI-0.2.0/ChileDataAPI/vignettes/ChileDataAPI_vignette.Rmd | 75 ++- 76 files changed, 528 insertions(+), 183 deletions(-)
Title: Cluster Gauss-Newton Method
Description: Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) <doi:10.1007/s11081-020-09571-2>. Cluster Gauss–Newton method. Optimization and Engineering, 1-31. Please cite the following paper when profile likelihood plot is drawn with this software and used in your research: Aoki and Sugiyama (2024) <doi:10.1002/psp4.13055>. Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models. CPT Pharmacometrics Syst Pharmacol.13(1):54-67. GPT based helper bot available at <https://chatgpt.com/g/g-684936db9e748191a2796debb00cd755-cluster-gauss-newton-method-helper-bot> .
Author: Yasunori Aoki [aut, cre]
Maintainer: Yasunori Aoki <yaoki@uwaterloo.ca>
Diff between CGNM versions 0.9.1 dated 2025-01-28 and 0.9.2 dated 2025-09-11
DESCRIPTION | 8 MD5 | 22 - NAMESPACE | 1 R/Cluster_Gauss_Newton_method.R | 200 ++++++++++++-- R/PostProcess.R | 124 +++++++-- inst/doc/CGNM-vignette.html | 312 +++++++++++------------ inst/shinyCGNM/CodeGenerationRelatedFunctions.R | 106 +++++++ inst/shinyCGNM/rsconnect |only inst/shinyCGNM/server.R | 143 ++++++++-- man/compare_profileLikelihood.Rd |only man/plot_2DprofileLikelihood.Rd | 5 man/plot_SSRsurface.Rd | 5 man/table_profileLikelihoodConfidenceInterval.Rd | 5 13 files changed, 678 insertions(+), 253 deletions(-)
Title: Functions to Assist Design and Analysis of Agronomic Experiments
Description: Provides functions to aid in the design and analysis of
agronomic and agricultural experiments through easy access to
documentation and helper functions, especially for users who are
learning these concepts. While not required for most functionality,
this package enhances the `asreml` package which provides a
computationally efficient algorithm for fitting mixed models
using Residual Maximum Likelihood. It is a commercial package
that can be purchased as 'asreml-R' from 'VSNi'
<https://vsni.co.uk/>, who will supply a zip file for local
installation/updating (see <https://asreml.kb.vsni.co.uk/>).
Author: Sharon Nielsen [aut],
Sam Rogers [aut, cre],
Annie Conway [aut],
University of Adelaide [cph, fnd] ,
Grains Research and Development Corporation [cph, fnd]
Maintainer: Sam Rogers <biometrytraining@adelaide.edu.au>
Diff between biometryassist versions 1.3.1 dated 2025-07-04 and 1.3.2 dated 2025-09-11
biometryassist-1.3.1/biometryassist/man/dot-check_package_available.Rd |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example1resplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example2resplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example3lmmresplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example3resplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example4lmmresplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example4resplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example5lmmresplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example6lmmresplot.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example6variogram.svg |only biometryassist-1.3.1/biometryassist/tests/testthat/_snaps/all-w2/example7lmmresplot.svg 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biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/autoplot-column.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/axis-and-label-rotation.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/axis-rotation-90.svg |only biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/axis-rotation.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/interactions-work.svg | 24 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/label-rotation.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/lme4-output.svg | 8 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-ascending-order.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-dashes-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-descending-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-inverse-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-log-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-logit-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-output-1se.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-output-2se.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-power-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/mct-sqrt-output.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/no-letter-groups.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/rotation-and-axis-rotation.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/mct/rotation-and-label-rotation.svg | 6 biometryassist-1.3.2/biometryassist/tests/testthat/_snaps/utility_functions.md | 34 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biometryassist-1.3.2/biometryassist/tests/testthat/test-utility_functions.R | 10 biometryassist-1.3.2/biometryassist/tests/testthat/test-zzz_install_asreml.R | 309 +++++++ 115 files changed, 1431 insertions(+), 889 deletions(-)
More information about biometryassist at CRAN
Permanent link
Title: Sample and Precomputed Data for Use with 'exams.forge'
Description: Provides a small collection of datasets supporting Pearson correlation
and linear regression analysis. It includes the precomputed dataset 'sos100',
with integer values summing to zero and squared sum equal to 100. For other
values of 'n' and user-defined parameters, the 'sos()' function from the
'exams.forge' package can be used to generate datasets on the fly. In addition,
the package contains around 500 R Markdown exercises that illustrate the usage
of 'exams.forge' commands.
Author: Sigbert Klinke [aut, cre]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between exams.forge.data versions 0.1.0 dated 2025-01-10 and 0.1.2 dated 2025-09-11
exams.forge.data-0.1.0/exams.forge.data/data/distributions.rda |only exams.forge.data-0.1.0/exams.forge.data/data/skalenniveau.rda |only exams.forge.data-0.1.0/exams.forge.data/data/sos1000.rda |only exams.forge.data-0.1.0/exams.forge.data/data/sos200.rda |only exams.forge.data-0.1.0/exams.forge.data/data/sos400.rda |only exams.forge.data-0.1.0/exams.forge.data/data/sos800.rda |only exams.forge.data-0.1.0/exams.forge.data/man/distributions.Rd |only exams.forge.data-0.1.0/exams.forge.data/man/skalenniveau.Rd |only exams.forge.data-0.1.2/exams.forge.data/DESCRIPTION | 38 exams.forge.data-0.1.2/exams.forge.data/MD5 | 662 +++++++++- exams.forge.data-0.1.2/exams.forge.data/NAMESPACE | 4 exams.forge.data-0.1.2/exams.forge.data/R/data.R | 73 - exams.forge.data-0.1.2/exams.forge.data/R/view.R |only exams.forge.data-0.1.2/exams.forge.data/README.md | 2 exams.forge.data-0.1.2/exams.forge.data/build |only exams.forge.data-0.1.2/exams.forge.data/data/sos100.rda |binary exams.forge.data-0.1.2/exams.forge.data/inst |only exams.forge.data-0.1.2/exams.forge.data/man/sos.Rd | 25 exams.forge.data-0.1.2/exams.forge.data/man/view.Rd |only exams.forge.data-0.1.2/exams.forge.data/vignettes |only 20 files changed, 687 insertions(+), 117 deletions(-)
More information about exams.forge.data at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-10 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-29 0.5.4
2023-07-10 0.5.3
2023-06-26 0.5.1
2022-08-25 0.4.1
2018-06-18 0.3.1
2017-05-17 0.3.0
2016-08-11 0.2.0
2016-02-15 0.1.1
2016-01-28 0.1
Title: Helper Functions for Creating Tutorials
Description: Helper functions for creating, editing, and testing tutorials
created with the 'learnr' package. Provides a simple method for allowing
students to download their answers to tutorial questions. For examples
of its use, see the 'r4ds.tutorials' package.
Author: David Kane [aut, cre, cph]
Maintainer: David Kane <dave.kane@gmail.com>
Diff between tutorial.helpers versions 0.5.0 dated 2025-05-11 and 0.6.0 dated 2025-09-11
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More information about tutorial.helpers at CRAN
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Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>, Harris, et al. (2009) <doi:10.1016/j.jbi.2008.08.010>,
Harris, et al. (2019) <doi:10.1016/j.jbi.2019.103208>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Savannah Obregon [ctb],
Thomas Obadia [ctb],
Marcus Lehr [ctb],
Brian High [ctb],
Stephen Lane [ctb],
Will Beasley [ctb],
Will Gray [ctb],
Nick Kennedy [ctb],
Tan Hsi-Nien [ctb],
Jeffrey Horner [ [...truncated...]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between redcapAPI versions 2.11.1 dated 2025-08-18 and 2.11.3 dated 2025-09-11
redcapAPI-2.11.1/redcapAPI/R/deprecated_recapProjectInfo.R |only redcapAPI-2.11.1/redcapAPI/R/exportBundle.R |only redcapAPI-2.11.1/redcapAPI/man/deprecated_redcapProjectInfo.Rd |only redcapAPI-2.11.1/redcapAPI/man/exportBundle.Rd |only redcapAPI-2.11.3/redcapAPI/DESCRIPTION | 6 redcapAPI-2.11.3/redcapAPI/MD5 | 120 - redcapAPI-2.11.3/redcapAPI/NAMESPACE | 10 redcapAPI-2.11.3/redcapAPI/NEWS.md | 14 redcapAPI-2.11.3/redcapAPI/R/allocationTable.R | 326 +-- redcapAPI-2.11.3/redcapAPI/R/constructLinkToRedcapForm.R | 212 +- redcapAPI-2.11.3/redcapAPI/R/createFileRepositoryFolder.R | 140 - redcapAPI-2.11.3/redcapAPI/R/curl.R | 20 redcapAPI-2.11.3/redcapAPI/R/deleteFileRepository.R | 80 redcapAPI-2.11.3/redcapAPI/R/deleteFiles.R | 90 - redcapAPI-2.11.3/redcapAPI/R/dropRepeatingNA.R | 54 redcapAPI-2.11.3/redcapAPI/R/exportDataQuality.R | 43 redcapAPI-2.11.3/redcapAPI/R/exportFileRepository.R | 108 - redcapAPI-2.11.3/redcapAPI/R/exportFiles.R | 122 - redcapAPI-2.11.3/redcapAPI/R/exportFilesMultiple.R | 222 +- redcapAPI-2.11.3/redcapAPI/R/exportRecords.R | 206 +- redcapAPI-2.11.3/redcapAPI/R/exportRecordsTyped.R | 640 +++---- redcapAPI-2.11.3/redcapAPI/R/exportRecords_offline.R | 178 +- redcapAPI-2.11.3/redcapAPI/R/exportReports.R | 126 - redcapAPI-2.11.3/redcapAPI/R/exportSAS.R | 4 redcapAPI-2.11.3/redcapAPI/R/fieldCastingFunctions.R | 882 +++++----- redcapAPI-2.11.3/redcapAPI/R/fieldToVar.R | 144 - redcapAPI-2.11.3/redcapAPI/R/getProjectIdFields.R | 42 redcapAPI-2.11.3/redcapAPI/R/importFiles.R | 118 - redcapAPI-2.11.3/redcapAPI/R/importRecords.R | 326 +-- redcapAPI-2.11.3/redcapAPI/R/isZeroCodedCheckField.R | 124 - redcapAPI-2.11.3/redcapAPI/R/logging.R |only redcapAPI-2.11.3/redcapAPI/R/makeApiCall.R | 28 redcapAPI-2.11.3/redcapAPI/R/makeRedcapFactor.R | 40 redcapAPI-2.11.3/redcapAPI/R/recodeCheck.R | 90 - redcapAPI-2.11.3/redcapAPI/R/redcapDataStructure.R | 392 ++-- redcapAPI-2.11.3/redcapAPI/R/redcapError.R | 16 redcapAPI-2.11.3/redcapAPI/R/redcapFactorFlip.R | 40 redcapAPI-2.11.3/redcapAPI/R/reviewInvalidRecords.R | 112 - redcapAPI-2.11.3/redcapAPI/R/switchDag.R | 80 redcapAPI-2.11.3/redcapAPI/R/unlockREDCap.R | 12 redcapAPI-2.11.3/redcapAPI/R/validateImport_methods.R | 2 redcapAPI-2.11.3/redcapAPI/R/widerRepeated.R | 52 redcapAPI-2.11.3/redcapAPI/R/zzz.R | 26 redcapAPI-2.11.3/redcapAPI/README.md | 4 redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-best-practices.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-casting-data.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-data-validation.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-faq.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-missing-data-detection.pdf |binary redcapAPI-2.11.3/redcapAPI/inst/doc/redcapAPI-offline-connection.pdf |binary redcapAPI-2.11.3/redcapAPI/man/allocationTable.Rd | 20 redcapAPI-2.11.3/redcapAPI/man/createFileRepositoryFolder.Rd | 24 redcapAPI-2.11.3/redcapAPI/man/exportBulkRecords.Rd | 6 redcapAPI-2.11.3/redcapAPI/man/exportFilesMultiple.Rd | 50 redcapAPI-2.11.3/redcapAPI/man/fieldCastingFunctions.Rd | 30 redcapAPI-2.11.3/redcapAPI/man/getProjectIdFields.Rd | 8 redcapAPI-2.11.3/redcapAPI/man/importRecords.Rd | 28 redcapAPI-2.11.3/redcapAPI/man/isZeroCodedCheckField.Rd | 8 redcapAPI-2.11.3/redcapAPI/man/logEvent.Rd |only redcapAPI-2.11.3/redcapAPI/man/reviewInvalidRecords.Rd | 8 redcapAPI-2.11.3/redcapAPI/man/switchDag.Rd | 8 redcapAPI-2.11.3/redcapAPI/man/widerRepeated.Rd | 8 redcapAPI-2.11.3/redcapAPI/tests/testthat/test-352-savePurgeRestoreProject-Functionality.R | 8 64 files changed, 2749 insertions(+), 2708 deletions(-)
Title: Generate Partial Derivatives using 'Rcpp', 'Eigen' and 'CppAD'
Description: Compiles 'C++' code using 'Rcpp' <doi:10.18637/jss.v040.i08>, 'Eigen' <doi:10.18637/jss.v052.i05> and 'CppAD' to produce first and second order partial derivatives. Also provides an implementation of Faa' di Bruno's formula to combine the partial derivatives of composed functions.
Author: Daniel Grose [aut, cre],
Robert Crouchley [aut, ctb]
Maintainer: Daniel Grose <dan.grose@lancaster.ac.uk>
This is a re-admission after prior archival of version 1.0.0 dated 2018-06-15
Diff between RcppEigenAD versions 1.0.0 dated 2018-06-15 and 1.1.0 dated 2025-09-11
RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/acosh.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/asinh.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/atanh.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/atomic_base.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/checkpoint.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/define.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/discrete.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/erf.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/expm1.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/forward.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/independent.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/log1p.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/old_atomic.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/par_var.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/std_math_98.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/test_vector.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/core/vec_ad.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/example/eigen_cholesky.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/example/eigen_mat_inv.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/example/eigen_mat_mul.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/example/mat_mul.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/abs_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/acos_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/acosh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/add_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/asin_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/asinh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/atan_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/atanh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/comp_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/cond_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/cos_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/cosh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/cskip_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/csum_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/discrete_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/div_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/erf_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/exp_op.hpp |only 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RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/optimize/get_opt_op_info.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/optimize/old2new.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/optimize/opt_op_info.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/parameter_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/player.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/pow_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/print_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/prototype_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/recorder.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/rev_hes_sweep.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/rev_jac_sweep.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/reverse_sweep.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sign_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sin_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sinh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sparse_binary_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sparse_internal.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sparse_list.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sparse_pack.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sparse_unary_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sqrt_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/store_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/sub_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/tan_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/tanh_op.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/user_state.hpp |only RcppEigenAD-1.0.0/RcppEigenAD/inst/include/cppad/local/zmul_op.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/DESCRIPTION | 27 RcppEigenAD-1.1.0/RcppEigenAD/MD5 | 674 +- RcppEigenAD-1.1.0/RcppEigenAD/NEWS.md |only RcppEigenAD-1.1.0/RcppEigenAD/R/comp.R | 1 RcppEigenAD-1.1.0/RcppEigenAD/R/zzz.R | 1 RcppEigenAD-1.1.0/RcppEigenAD/build/partial.rdb |binary RcppEigenAD-1.1.0/RcppEigenAD/inst/REFERENCES.bib | 2 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad.eigen.h | 11 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/base_require.hpp | 247 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/configure.hpp | 432 + RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/abort_recording.hpp | 69 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/abs.hpp | 180 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/abs_normal_fun.hpp | 1742 +++--- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad.hpp | 519 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_assign.hpp | 123 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_binary.hpp | 252 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_ctor.hpp | 181 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_fun.hpp | 1507 +++--- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_io.hpp | 272 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_to_string.hpp | 102 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_type.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ad_valued.hpp | 61 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/add.hpp | 187 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/add_eq.hpp | 181 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/arithmetic.hpp | 42 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/atan2.hpp | 209 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/atomic |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/azmul.hpp | 344 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base2ad.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_complex.hpp | 580 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_cond_exp.hpp | 404 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_double.hpp | 422 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_float.hpp | 422 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_hash.hpp | 103 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_limits.hpp | 94 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_std_math.hpp | 247 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/base_to_string.hpp | 88 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/bender_quad.hpp | 718 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/bool_fun.hpp | 233 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/bool_valued.hpp | 67 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/capacity_order.hpp | 333 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/check_for_nan.hpp | 292 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/chkpoint_one |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/chkpoint_two |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/compare.hpp | 876 ++- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/compound_assign.hpp | 233 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/con_dyn_var.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/cond_exp.hpp | 430 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/convert.hpp | 61 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/cppad_assert.hpp | 188 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/dependent.hpp | 482 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/discrete |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/div.hpp | 189 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/div_eq.hpp | 183 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/drivers.hpp | 15 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/epsilon.hpp | 72 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/equal_op_seq.hpp | 162 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_hes_sparsity.hpp | 475 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_jac_sparsity.hpp | 439 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_one.hpp | 243 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_sparse_hes.hpp | 832 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_sparse_jac.hpp | 1095 ++-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/for_two.hpp | 433 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/forward |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/fun_check.hpp | 353 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/fun_construct.hpp | 789 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/fun_eval.hpp | 18 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/graph |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/hash_code.hpp | 44 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/hessian.hpp | 353 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/identical.hpp | 50 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/independent |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/integer.hpp | 157 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/jacobian.hpp | 393 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/lu_ratio.hpp | 586 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/mul.hpp | 199 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/mul_eq.hpp | 201 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/near_equal_ext.hpp | 210 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/new_dynamic.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/num_skip.hpp | 176 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/numeric_limits.hpp | 361 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/omp_max_thread.hpp | 102 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/opt_val_hes.hpp | 778 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/optimize.hpp | 550 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/ordered.hpp | 41 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/parallel_ad.hpp | 202 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/pow.hpp | 374 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/print_for.hpp | 388 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_hes_sparsity.hpp | 386 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_jac_sparsity.hpp | 376 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_one.hpp | 250 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_sparse_hes.hpp | 943 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_sparse_jac.hpp | 930 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/rev_two.hpp | 393 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/reverse.hpp | 276 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sign.hpp | 168 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sparse.hpp | 26 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sparse_hes.hpp | 802 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sparse_hessian.hpp | 1164 ++-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sparse_jac.hpp | 899 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sparse_jacobian.hpp | 1490 ++--- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/standard_math.hpp | 219 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/std_math_11.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sub.hpp | 174 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/sub_eq.hpp | 173 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/subgraph_jac_rev.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/subgraph_reverse.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/subgraph_sparsity.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/tape_link.hpp | 310 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/testvector.hpp | 185 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/to_csrc.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/unary_minus.hpp | 165 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/unary_plus.hpp | 115 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/undef.hpp | 84 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/user_ad.hpp | 84 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/value.hpp | 119 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/var2par.hpp | 100 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/vec_ad |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/core/zdouble.hpp | 621 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/cppad.hpp | 34 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/atomic_four |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/atomic_three |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/atomic_two |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/base_adolc.hpp | 645 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/code_gen_fun.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/cppad_eigen.hpp | 380 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/eigen_plugin.hpp | 32 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/example/valvector |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/ipopt/solve.hpp | 1011 ++-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/ipopt/solve_callback.hpp | 2293 ++++----- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/ipopt/solve_result.hpp | 87 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/ad_tape.hpp | 311 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/atom_state.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/atomic_index.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/color_general.hpp | 417 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/color_symmetric.hpp | 476 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/cppad_colpack.hpp | 52 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/declare_ad.hpp | 328 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/define.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/graph |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/hash_code.hpp | 324 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/independent.hpp | 145 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/is_pod.hpp | 110 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/op_code_dyn.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/op_code_var.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/cexp_info.hpp | 150 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/csum_op_info.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/csum_stacks.hpp | 38 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/extract_option.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/get_cexp_info.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/get_dyn_previous.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/get_op_previous.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/get_op_usage.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/get_par_usage.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/hash_code.hpp | 41 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/match_op.hpp | 569 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/optimize_run.hpp | 2167 +++++--- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/record_csum.hpp | 569 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/record_pv.hpp | 117 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/record_vp.hpp | 111 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/record_vv.hpp | 100 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/size_pair.hpp | 19 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/optimize/usage.hpp | 41 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/play |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/pod_vector.hpp | 894 ++- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/record |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/set_get_in_parallel.hpp | 115 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/sparse |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/std_set.hpp | 42 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/subgraph |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/sweep |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/temp_file.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/utility |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/val_graph |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/local/var_op |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/det_33.hpp | 162 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/det_by_lu.hpp | 256 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/det_by_minor.hpp | 262 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/det_grad_33.hpp | 189 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/det_of_minor.hpp | 467 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/mat_sum_sq.hpp | 228 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/ode_evaluate.hpp | 399 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/sparse_hes_fun.hpp | 447 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/sparse_jac_fun.hpp | 361 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/speed/uniform_01.hpp | 142 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility.hpp | 31 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/check_numeric_type.hpp | 268 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/check_simple_vector.hpp | 343 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/create_dll_lib.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/elapsed_seconds.hpp | 195 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/error_handler.hpp | 358 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/index_sort.hpp | 234 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/link_dll_lib.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/lu_factor.hpp | 645 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/lu_invert.hpp | 392 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/lu_solve.hpp | 527 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/memory_leak.hpp | 275 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/nan.hpp | 274 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/near_equal.hpp | 378 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/ode_err_control.hpp | 989 ++- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/ode_gear.hpp | 932 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/ode_gear_control.hpp | 925 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/omp_alloc.hpp | 1170 ++-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/poly.hpp | 296 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/pow_int.hpp | 216 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/romberg_mul.hpp | 516 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/romberg_one.hpp | 335 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/rosen_34.hpp | 842 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/runge_45.hpp | 720 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/set_union.hpp | 110 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/sparse2eigen.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/sparse_rc.hpp | 884 ++- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/sparse_rcv.hpp | 482 + RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/speed_test.hpp | 708 +- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/test_boolofvoid.hpp | 246 RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/thread_alloc.hpp | 2493 +++++----- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/time_test.hpp | 342 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/to_string.hpp | 264 - RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/track_new_del.hpp | 752 +-- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/vector.hpp | 1590 ++---- RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/utility/vector_bool.hpp |only RcppEigenAD-1.1.0/RcppEigenAD/inst/include/cppad/wno_conversion.hpp | 39 RcppEigenAD-1.1.0/RcppEigenAD/src/figere.cpp |only 302 files changed, 35068 insertions(+), 32788 deletions(-)
Title: Quantile-Frequency Analysis (QFA) of Time Series
Description: Quantile-frequency analysis (QFA) of time series based on trigonometric quantile regression.
Spline quantile regression (SQR) for regression coefficient estimation.
References:
[1] Li, T.-H. (2012) "Quantile periodograms," Journal of the American Statistical
Association, 107, 765–776, <doi:10.1080/01621459.2012.682815>.
[2] Li, T.-H. (2014) Time Series with Mixed Spectra, CRC Press, <doi:10.1201/b15154>
[3] Li, T.-H. (2022) "Quantile Fourier transform, quantile series, and nonparametric
estimation of quantile spectra," <doi:10.48550/arXiv.2211.05844>.
[4] Li, T.-H. (2024) "Quantile crossing spectrum and spline autoregression
estimation," <doi:10.48550/arXiv.2412.02513>.
[5] Li, T.-H. (2024) "Spline autoregression method for estimation of quantile spectrum,"
<doi:10.48550/arXiv.2412.17163>.
[6] Li, T.-H., and Megiddo, N. (2025) "Spline quantile regression,"
<doi:10.48550/arXiv.2501.03883>.
Author: Ta-Hsin Li [cre, aut]
Maintainer: Ta-Hsin Li <thl024@outlook.com>
Diff between qfa versions 4.1 dated 2025-04-09 and 4.2 dated 2025-09-11
qfa-4.1/qfa/R/qfa4.1.R |only qfa-4.2/qfa/DESCRIPTION | 10 ++--- qfa-4.2/qfa/MD5 | 66 ++++++++++++++++++------------------ qfa-4.2/qfa/R/qfa4.2.R |only qfa-4.2/qfa/man/per.Rd | 2 - qfa-4.2/qfa/man/qacf.Rd | 2 - qfa-4.2/qfa/man/qcser.Rd | 2 - qfa-4.2/qfa/man/qdft.Rd | 2 - qfa-4.2/qfa/man/qdft2qacf.Rd | 2 - qfa-4.2/qfa/man/qdft2qper.Rd | 2 - qfa-4.2/qfa/man/qdft2qser.Rd | 2 - qfa-4.2/qfa/man/qfa.plot.Rd | 2 - qfa-4.2/qfa/man/qkl.divergence.Rd | 2 - qfa-4.2/qfa/man/qper.Rd | 2 - qfa-4.2/qfa/man/qper2.Rd | 2 - qfa-4.2/qfa/man/qser.Rd | 2 - qfa-4.2/qfa/man/qser2ar.Rd | 15 ++++++-- qfa-4.2/qfa/man/qser2qacf.Rd | 2 - qfa-4.2/qfa/man/qser2sar.Rd | 30 +++++++++------- qfa-4.2/qfa/man/qspec.ar.Rd | 2 - qfa-4.2/qfa/man/qspec.lw.Rd | 2 - qfa-4.2/qfa/man/qspec.sar.Rd | 30 +++++++++------- qfa-4.2/qfa/man/qspec2qcoh.Rd | 2 - qfa-4.2/qfa/man/sar.eq.bootstrap.Rd | 10 ++--- qfa-4.2/qfa/man/sar.eq.test.Rd | 6 +-- qfa-4.2/qfa/man/sar.gc.bootstrap.Rd | 8 ++-- qfa-4.2/qfa/man/sar.gc.coef.Rd | 4 +- qfa-4.2/qfa/man/sar.gc.test.Rd | 4 +- qfa-4.2/qfa/man/sqdft.Rd | 2 - qfa-4.2/qfa/man/sqdft.fit.Rd | 2 - qfa-4.2/qfa/man/sqr.Rd | 2 - qfa-4.2/qfa/man/sqr.fit.Rd | 2 - qfa-4.2/qfa/man/sqr.fit.optim.Rd | 2 - qfa-4.2/qfa/man/tqr.fit.Rd | 2 - qfa-4.2/qfa/man/tsqr.fit.Rd | 2 - 35 files changed, 123 insertions(+), 106 deletions(-)
Title: Extended Dynamic Quantile Linear Models
Description: Routines for Bayesian estimation and analysis of dynamic quantile linear models utilizing the extended asymmetric Laplace error distribution, also known as extended dynamic quantile linear models (exDQLM) described in Barata et al (2020) <doi:10.1214/21-AOAS1497>.
Author: Raquel Barata [aut, cre],
Raquel Prado [ths],
Bruno Sanso [ths],
Antonio Aguirre [aut]
Maintainer: Raquel Barata <raquel.a.barata@gmail.com>
Diff between exdqlm versions 0.1.3 dated 2023-02-16 and 0.1.4 dated 2025-09-11
DESCRIPTION | 29 ++++++++-------- MD5 | 34 ++++++++++--------- NEWS.md | 15 ++++++++ R/exdqlmForecast.R | 61 ++++++++++++++++++++--------------- R/utils.R | 8 ++-- README.md |only build/partial.rdb |binary man/compPlot.Rd | 18 +++++----- man/dlmMod.Rd | 6 +-- man/exdqlmChecks.Rd | 24 ++++++------- man/exdqlmForecast.Rd | 54 ++++++++++++++++++------------- man/exdqlmISVB.Rd | 78 ++++++++++++++++++++++---------------------- man/exdqlmMCMC.Rd | 62 +++++++++++++++++------------------ man/exdqlmPlot.Rd | 16 ++++----- man/figures |only man/polytrendMod.Rd | 12 +++--- man/seasMod.Rd | 8 ++-- man/transfn_exdqlmISVB.Rd | 80 +++++++++++++++++++++++----------------------- tests |only 19 files changed, 272 insertions(+), 233 deletions(-)
Title: Document the R Working Environment
Description: Prints out information about the R working environment
(system, R version,loaded and attached packages and versions) from a single
function "env_doc()". Optionally adds information on git repository,
tags, commits and remotes (if available).
Author: Donald Jackson [aut, cre]
Maintainer: Donald Jackson <djackson2641@gmail.com>
Diff between envDocument versions 2.4.1 dated 2019-08-19 and 2.4.2 dated 2025-09-11
envDocument-2.4.1/envDocument/tests/test_envDocument.Rmd |only envDocument-2.4.1/envDocument/tests/test_envDocument.html |only envDocument-2.4.2/envDocument/DESCRIPTION | 21 envDocument-2.4.2/envDocument/MD5 | 47 - envDocument-2.4.2/envDocument/NAMESPACE | 1 envDocument-2.4.2/envDocument/NEWS.md | 18 envDocument-2.4.2/envDocument/R/env_doc.R | 20 envDocument-2.4.2/envDocument/R/fileStatus.R | 7 envDocument-2.4.2/envDocument/R/getDominoInfo.R | 6 envDocument-2.4.2/envDocument/R/getGitInfo.R | 33 envDocument-2.4.2/envDocument/R/getRenvStatus.R |only envDocument-2.4.2/envDocument/R/getRepo.R | 4 envDocument-2.4.2/envDocument/R/getScriptInfo.R | 2 envDocument-2.4.2/envDocument/R/getScriptPath.R | 45 - envDocument-2.4.2/envDocument/R/getTag.R | 67 + envDocument-2.4.2/envDocument/R/remoteInfo.R | 14 envDocument-2.4.2/envDocument/build/vignette.rds |binary envDocument-2.4.2/envDocument/inst/doc/envDocument-vignette.R | 24 envDocument-2.4.2/envDocument/inst/doc/envDocument-vignette.html | 411 ++++++++-- envDocument-2.4.2/envDocument/man/envDocument-package.Rd | 8 envDocument-2.4.2/envDocument/man/env_doc.Rd | 25 envDocument-2.4.2/envDocument/man/getDominoInfo.Rd | 5 envDocument-2.4.2/envDocument/man/getRenvStatus.Rd |only envDocument-2.4.2/envDocument/tests/test_envDocument_quarto.qmd |only envDocument-2.4.2/envDocument/tests/test_envDocument_rmarkdown.Rmd |only envDocument-2.4.2/envDocument/tests/testthat/test-gitinfo.R | 27 envDocument-2.4.2/envDocument/tests/testthat/test-renv.R |only envDocument-2.4.2/envDocument/tests/testthat/test-return_dataframe.R | 4 28 files changed, 581 insertions(+), 208 deletions(-)
Title: Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Author: Sebastian Stoeckl [aut, cre] ,
Jesse Vent [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 2.0.3 dated 2024-10-11 and 2.0.5 dated 2025-09-11
DESCRIPTION | 17 - MD5 | 27 - NEWS.md | 8 R/crypto_info.R | 2 README.md | 153 ++++------ inst/CITATION |only tests/testthat/test-api.R | 8 tests/testthat/test-crypto-info.R | 2 tests/testthat/test-global-quotes.R | 7 tests/testthat/test-history.R | 8 tests/testthat/test-listings.R | 6 tests/testthat/test_data/4fb1f9d0e9f6acf897a94e7c9e0335b9.json | 2 tests/testthat/test_data/crypto_info_reference.rds |binary tests/testthat/test_data/eacfa0a56f0cb7ea3b22937d92d70a32.json | 2 tests/testthat/test_data/ex_info_reference.rds |binary 15 files changed, 130 insertions(+), 112 deletions(-)
Title: Interacting with BibTeX Databases
Description: Reading and writing BibTeX files using data frames in R sessions.
Author: Miguel Alvarez [aut, cre]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between biblio versions 0.0.10 dated 2024-06-07 and 0.0.12 dated 2025-09-11
DESCRIPTION | 11 ++++++----- MD5 | 23 +++++++++++++---------- R/detect_keys.R | 5 ++--- R/doi2bib.R | 2 +- R/reflist.R | 6 +++--- R/sysdata.rda |binary build/partial.rdb |binary data/synopsis.rda |binary inst/csl |only inst/examples |only man/detect_keys.Rd | 2 +- man/doi2bib.Rd | 2 +- man/reflist.Rd | 6 +++--- 13 files changed, 30 insertions(+), 27 deletions(-)