Title: Ensemble Models of Rank-Based Trees with Extracted Decision
Rules
Description: Fast computing an ensemble of rank-based trees via boosting or random forest on binary and multi-class problems. It converts continuous gene expression profiles into ranked gene pairs, for which the variable importance indices are computed and adopted for dimension reduction. Decision rules can be extracted from trees.
Author: Ruijie Yin [aut],
Chen Ye [aut],
Min Lu [aut, cre]
Maintainer: Min Lu <luminwin@gmail.com>
Diff between ranktreeEnsemble versions 0.23 dated 2024-05-23 and 0.24 dated 2025-09-13
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/rboost.Rd | 6 +++--- 3 files changed, 10 insertions(+), 10 deletions(-)
More information about ranktreeEnsemble at CRAN
Permanent link
Title: Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Description: The plsdof package provides Degrees of Freedom estimates
for Partial Least Squares (PLS) Regression. Model selection for
PLS is based on various information criteria (aic, bic, gmdl)
or on cross-validation. Estimates for the mean and covariance
of the PLS regression coefficients are available. They allow
the construction of approximate confidence intervals and the
application of test procedures (Kramer and Sugiyama
2012 <doi:10.1198/jasa.2011.tm10107>).
Further, cross-validation procedures for Ridge Regression and
Principal Components Regression are available.
Author: Nicole Kraemer [aut],
Mikio L. Braun [aut],
Frederic Bertrand [aut, cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsdof versions 0.3-2 dated 2022-11-30 and 0.4-0 dated 2025-09-13
DESCRIPTION | 24 ++- MD5 | 22 ++- NEWS.md | 9 + R/plsdof-package.R | 40 +---- README.md | 357 ++++++++++++++++++++++++++------------------------ build |only inst/CITATION | 29 +++- inst/_pkgdown.yml |only man/plsdof-package.Rd | 49 ++---- tests |only 10 files changed, 282 insertions(+), 248 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [ctb] , [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3 versions 1.1.0 dated 2025-07-30 and 1.2.0 dated 2025-09-13
mlr3-1.1.0/mlr3/R/DataBackendMatrix.R |only mlr3-1.1.0/mlr3/R/helper_print.R |only mlr3-1.1.0/mlr3/man/DataBackendMatrix.Rd |only mlr3-1.1.0/mlr3/tests/testthat/test_DataBackendMatrix.R |only mlr3-1.1.0/mlr3/tests/testthat/test_parallel.R |only mlr3-1.2.0/mlr3/DESCRIPTION | 58 - mlr3-1.2.0/mlr3/MD5 | 199 +++--- mlr3-1.2.0/mlr3/NAMESPACE | 9 mlr3-1.2.0/mlr3/NEWS.md | 18 mlr3-1.2.0/mlr3/R/BenchmarkResult.R | 16 mlr3-1.2.0/mlr3/R/CallbackResample.R | 2 mlr3-1.2.0/mlr3/R/DataBackend.R | 20 mlr3-1.2.0/mlr3/R/DataBackendCbind.R | 3 mlr3-1.2.0/mlr3/R/DataBackendDataTable.R | 7 mlr3-1.2.0/mlr3/R/DataBackendRbind.R | 3 mlr3-1.2.0/mlr3/R/DataBackendRename.R | 3 mlr3-1.2.0/mlr3/R/HotstartStack.R | 8 mlr3-1.2.0/mlr3/R/Learner.R | 114 ++- mlr3-1.2.0/mlr3/R/LearnerClassif.R | 5 mlr3-1.2.0/mlr3/R/LearnerClassifDebug.R | 9 mlr3-1.2.0/mlr3/R/LearnerClassifFeatureless.R | 3 mlr3-1.2.0/mlr3/R/LearnerRegr.R | 9 mlr3-1.2.0/mlr3/R/LearnerRegrDebug.R | 2 mlr3-1.2.0/mlr3/R/LearnerRegrFeatureless.R | 8 mlr3-1.2.0/mlr3/R/Measure.R | 39 - mlr3-1.2.0/mlr3/R/MeasureAIC.R | 4 mlr3-1.2.0/mlr3/R/MeasureOOBError.R | 6 mlr3-1.2.0/mlr3/R/MeasureRegrRQR.R | 32 - mlr3-1.2.0/mlr3/R/MeasureSimple.R | 2 mlr3-1.2.0/mlr3/R/Prediction.R | 5 mlr3-1.2.0/mlr3/R/PredictionData.R | 12 mlr3-1.2.0/mlr3/R/PredictionDataClassif.R | 2 mlr3-1.2.0/mlr3/R/ResampleResult.R | 26 mlr3-1.2.0/mlr3/R/Resampling.R | 24 mlr3-1.2.0/mlr3/R/ResamplingSubsampling.R | 2 mlr3-1.2.0/mlr3/R/ResultData.R | 10 mlr3-1.2.0/mlr3/R/Task.R | 128 +++- mlr3-1.2.0/mlr3/R/TaskClassif.R | 5 mlr3-1.2.0/mlr3/R/TaskGenerator.R | 5 mlr3-1.2.0/mlr3/R/TaskRegr.R | 2 mlr3-1.2.0/mlr3/R/as_data_backend.R | 5 mlr3-1.2.0/mlr3/R/as_task_classif.R | 30 mlr3-1.2.0/mlr3/R/as_task_regr.R | 23 mlr3-1.2.0/mlr3/R/assertions.R | 35 - mlr3-1.2.0/mlr3/R/benchmark.R | 8 mlr3-1.2.0/mlr3/R/benchmark_grid.R | 9 mlr3-1.2.0/mlr3/R/default_fallback.R | 1 mlr3-1.2.0/mlr3/R/fix_factor_levels.R | 9 mlr3-1.2.0/mlr3/R/helper.R | 4 mlr3-1.2.0/mlr3/R/helper_data_table.R | 28 mlr3-1.2.0/mlr3/R/helper_exec.R | 5 mlr3-1.2.0/mlr3/R/mlr_reflections.R | 7 mlr3-1.2.0/mlr3/R/partition.R | 27 mlr3-1.2.0/mlr3/R/resample.R | 9 mlr3-1.2.0/mlr3/R/score_roc_measures.R | 4 mlr3-1.2.0/mlr3/R/task_converters.R | 2 mlr3-1.2.0/mlr3/R/worker.R | 72 +- mlr3-1.2.0/mlr3/R/zzz.R | 6 mlr3-1.2.0/mlr3/inst/testthat/helper_autotest.R | 101 ++- mlr3-1.2.0/mlr3/inst/testthat/helper_misc.R | 8 mlr3-1.2.0/mlr3/man/BenchmarkResult.Rd | 84 ++ mlr3-1.2.0/mlr3/man/DataBackend.Rd | 23 mlr3-1.2.0/mlr3/man/DataBackendDataTable.Rd | 11 mlr3-1.2.0/mlr3/man/Learner.Rd | 147 ++++ mlr3-1.2.0/mlr3/man/LearnerClassif.Rd | 4 mlr3-1.2.0/mlr3/man/LearnerRegr.Rd | 6 mlr3-1.2.0/mlr3/man/Measure.Rd | 62 + mlr3-1.2.0/mlr3/man/ResampleResult.Rd | 130 ++++ mlr3-1.2.0/mlr3/man/Resampling.Rd | 63 + mlr3-1.2.0/mlr3/man/Task.Rd | 318 +++++++++- mlr3-1.2.0/mlr3/man/TaskClassif.Rd | 1 mlr3-1.2.0/mlr3/man/TaskRegr.Rd | 1 mlr3-1.2.0/mlr3/man/TaskSupervised.Rd | 1 mlr3-1.2.0/mlr3/man/TaskUnsupervised.Rd | 1 mlr3-1.2.0/mlr3/man/as_data_backend.Rd | 16 mlr3-1.2.0/mlr3/man/as_task_classif.Rd | 17 mlr3-1.2.0/mlr3/man/as_task_regr.Rd | 25 mlr3-1.2.0/mlr3/man/benchmark.Rd | 15 mlr3-1.2.0/mlr3/man/benchmark_grid.Rd | 2 mlr3-1.2.0/mlr3/man/mlr3-package.Rd | 5 mlr3-1.2.0/mlr3/man/mlr_assertions.Rd | 7 mlr3-1.2.0/mlr3/man/mlr_learners_classif.debug.Rd | 1 mlr3-1.2.0/mlr3/man/mlr_measures_classif.acc.Rd | 6 mlr3-1.2.0/mlr3/man/mlr_measures_regr.bias.Rd | 4 mlr3-1.2.0/mlr3/man/mlr_measures_regr.pbias.Rd | 4 mlr3-1.2.0/mlr3/man/mlr_measures_regr.sae.Rd | 5 mlr3-1.2.0/mlr3/man/mlr_measures_regr.sse.Rd | 5 mlr3-1.2.0/mlr3/man/mlr_reflections.Rd | 1 mlr3-1.2.0/mlr3/man/partition.Rd | 3 mlr3-1.2.0/mlr3/man/resample.Rd | 15 mlr3-1.2.0/mlr3/tests/testthat/test_Learner.R | 177 +++++ mlr3-1.2.0/mlr3/tests/testthat/test_Task.R | 57 + mlr3-1.2.0/mlr3/tests/testthat/test_as_task.R | 4 mlr3-1.2.0/mlr3/tests/testthat/test_autotest.R | 155 ++++ mlr3-1.2.0/mlr3/tests/testthat/test_backward_compatibility.R |only mlr3-1.2.0/mlr3/tests/testthat/test_benchmark.R | 4 mlr3-1.2.0/mlr3/tests/testthat/test_convert_task.R | 13 mlr3-1.2.0/mlr3/tests/testthat/test_encapsulate.R | 23 mlr3-1.2.0/mlr3/tests/testthat/test_errorhandling.R | 3 mlr3-1.2.0/mlr3/tests/testthat/test_helper_data_table.R |only mlr3-1.2.0/mlr3/tests/testthat/test_mlr_learners_regr_debug.R | 20 mlr3-1.2.0/mlr3/tests/testthat/test_mlr_learners_regr_featureless.R | 7 mlr3-1.2.0/mlr3/tests/testthat/test_parallel_future.R |only mlr3-1.2.0/mlr3/tests/testthat/test_parallel_mirai.R |only mlr3-1.2.0/mlr3/tests/testthat/test_resample.R | 10 105 files changed, 2079 insertions(+), 570 deletions(-)
Title: Display Information About Nested Subsets of a Data Frame
Description: A tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame. <doi:10.18637/jss.v114.i04>.
Author: Nick Barrowman [aut, cre],
Sebastian Gatscha [aut],
Franco Momoli [cph]
Maintainer: Nick Barrowman <nbarrowman@cheo.on.ca>
Diff between vtree versions 5.6.5 dated 2022-12-10 and 5.7.0 dated 2025-09-13
DESCRIPTION | 12 MD5 | 88 NAMESPACE | 46 NEWS.md | 704 ++--- R/VennTable.R | 206 - R/around.R | 84 R/build.data.frame.R | 124 R/buildCanopy.R | 868 +++--- R/combineVars.R | 114 R/convertToHTML.R | 118 R/crosstabToCases.R | 88 R/data.R | 150 - R/grVizToImageFile.R | 148 - R/grVizToPNG.R | 76 R/joinflow.R | 78 R/labelsAndLegends.R | 442 +-- R/logging.R |only R/nodeMeanSD.R | 18 R/onAttach.R | 12 R/parseSummary.R | 1084 +++---- R/shiny.R | 532 +-- R/showflow.R | 92 R/splitlines.R | 108 R/summaryNodeFunction.R | 1203 ++++---- R/svtree.R | 54 R/tableWithoutSort.R | 34 R/vtree.R | 6136 ++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/CITATION |only inst/doc/vtree.R | 698 ++--- inst/doc/vtree.Rmd | 4202 +++++++++++++++--------------- inst/doc/vtree.html | 4981 ++++++++++++++++++----------------- inst/examples/shiny_app.R | 52 inst/www/svg_pan_zoom.js | 4 man/FakeData.Rd | 80 man/FakeRCT.Rd | 54 man/VennTable.Rd | 118 man/grVizToImageFile.Rd | 84 man/the.matrix.Rd | 74 man/use_svgzoom.Rd | 146 - man/vtree-package.Rd | 62 man/vtree.Rd | 1091 +++---- tests/testthat.R | 8 tests/testthat/test-vtree.R | 966 +++--- vignettes/vtree.Rmd | 4202 +++++++++++++++--------------- vignettes/vtreeVignette.css | 422 +-- 46 files changed, 15035 insertions(+), 14828 deletions(-)
Title: PC Algorithm with the Principle of Mendelian Randomization
Description: A PC Algorithm with the Principle of Mendelian Randomization. This package implements the MRPC
(PC with the principle of Mendelian randomization) algorithm to infer causal graphs. It also
contains functions to simulate data under a certain topology, to visualize a graph in different
ways, and to compare graphs and quantify the differences.
See Badsha and Fu (2019) <doi:10.3389/fgene.2019.00460>,
Badsha, Martin and Fu (2021) <doi:10.3389/fgene.2021.651812>,
Kvamme and Badsha, et al. (2025) <doi:10.1093/genetics/iyaf064>.
Author: Md Bahadur Badsha [aut],
Evan A Martin [ctb],
Audrey Fu [aut, cre]
Maintainer: Audrey Fu <audreyqyfu@gmail.com>
Diff between MRPC versions 3.1.0 dated 2022-04-11 and 3.2.0 dated 2025-09-13
DESCRIPTION | 32 ++++++--- MD5 | 75 ++++++++++----------- NAMESPACE | 132 ++++++++++++++++++++++++-------------- R/AdjustMatrix.R | 2 R/Classes.R | 49 ++++++++------ R/CompareMethodsNodeOrdering.R | 1 R/CompareMethodsVStructure.R | 1 R/CutModules.R | 1 R/EdgeOrientation.R | 2 R/IdentifyAssociatedPCs.R | 1 R/MRPC.R | 2 R/ModiSkeleton.R | 2 R/PlotDendrogram.R | 1 R/PlotGraphWithModules.R | 1 R/RecallPrecision.R | 1 R/RobustCor.R | 1 R/SeqFDR.R | 1 R/SimulateData.R | 2 R/SimulateData1P.R | 1 R/SimulateData2P.R | 1 R/SimulateData3P.R | 1 R/SimulateDataNP.R | 1 R/aSHD.R | 1 R/empty.R | 1 R/imports.R |only R/mpinv.r | 1 R/seqDiff.R | 1 README.md | 46 ++++++++----- man/CompareMethodsNodeOrdering.Rd | 5 + man/CompareMethodsVStructure.Rd | 9 ++ man/CutModules.Rd | 2 man/EdgeOrientation.Rd | 16 +++- man/MRPC.Rd | 112 +++++++++++++++++++++++++------- man/MRPCclass.Rd | 15 ++-- man/ModiSkeleton.Rd | 34 +++++++-- man/PlotDendrogram.Rd | 14 ++-- man/PlotGraphWithModules.Rd | 2 man/data_with_outliers.Rd | 6 + man/data_without_outliers.Rd | 5 + 39 files changed, 396 insertions(+), 185 deletions(-)
Title: Access Mexican Data via APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including
'REST Countries API', 'World Bank API', and 'Nager.Date API', covering Mexico's economic
indicators, population statistics, literacy rates, international geopolitical
information and official public holidays. The package also includes curated
datasets related to Mexico such as air quality monitoring stations, pollution
zones, income surveys, postal abbreviations, election studies, forest
productivity and demographic data by state. It supports research and analysis
focused on Mexico by integrating reliable global APIs with structured national
datasets drawn from open and academic sources.
For more information on the APIs, see:
'REST Countries API' <https://restcountries.com/>,
'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>,
and 'Nager.Date API' <https://date.nager.at/Api>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between MexicoDataAPI versions 0.1.0 dated 2025-07-16 and 0.2.0 dated 2025-09-13
MexicoDataAPI-0.1.0/MexicoDataAPI/R/get_country_info.R |only MexicoDataAPI-0.1.0/MexicoDataAPI/man/get_country_info.Rd |only MexicoDataAPI-0.1.0/MexicoDataAPI/tests/testthat/test-get_country_info.R |only MexicoDataAPI-0.2.0/MexicoDataAPI/DESCRIPTION | 30 ++- MexicoDataAPI-0.2.0/MexicoDataAPI/MD5 | 80 +++++----- MexicoDataAPI-0.2.0/MexicoDataAPI/NAMESPACE | 6 MexicoDataAPI-0.2.0/MexicoDataAPI/NEWS.md |only MexicoDataAPI-0.2.0/MexicoDataAPI/R/data-documentation.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_country_info_mx.R |only MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_cpi.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_gdp.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_holidays.R |only MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_life_expectancy.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_literacy_rate.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_population.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/get_mexico_unemployment.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/R/mexicodataapi-package.R | 4 MexicoDataAPI-0.2.0/MexicoDataAPI/R/utils.R | 10 - MexicoDataAPI-0.2.0/MexicoDataAPI/R/view_datasets_MexicoDataAPI.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/README.md | 24 +-- MexicoDataAPI-0.2.0/MexicoDataAPI/inst/CITATION | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/inst/doc/MexicoDataAPI_vignette.Rmd | 16 +- MexicoDataAPI-0.2.0/MexicoDataAPI/inst/doc/MexicoDataAPI_vignette.html | 55 +++--- MexicoDataAPI-0.2.0/MexicoDataAPI/inst/licenses/LICENSE.md | 8 + MexicoDataAPI-0.2.0/MexicoDataAPI/man/MexicoDataAPI.Rd | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/man/get_country_info_mx.Rd |only MexicoDataAPI-0.2.0/MexicoDataAPI/man/get_mexico_holidays.Rd |only MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-chiapas_dry_forests_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_country_info_mx.R |only MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_cpi.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_gdp.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_holidays.R |only MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_life_expectancy.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_literacy_rate.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_population.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-get_mexico_unemployment.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-mex_income_2008_tbl_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-mex_income_2016_tbl_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-mexico_abb_chr.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-mexico_elections_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-mexico_states_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-pollution_stations_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-pollution_zones_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-stations_sinaica_df.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/tests/testthat/test-view_datasets_MexicoDataAPI.R | 2 MexicoDataAPI-0.2.0/MexicoDataAPI/vignettes/MexicoDataAPI_vignette.Rmd | 16 +- 46 files changed, 168 insertions(+), 133 deletions(-)
Title: Bivariate Copula Functions Based on Regular Grid
Description: Estimates grid type bivariate copula functions, calculates some association measures and provides several copula graphics.
Author: Rogelio Salinas Gutierrez [aut, cre, cph] ,
Angelica Hernandez Quintero [aut, cph] ,
Pedro Abraham Montoya Calzada [aut, cph]
Maintainer: Rogelio Salinas Gutierrez <rsalinas@correo.uaa.mx>
This is a re-admission after prior archival of version 1.0.1 dated 2024-04-05
Diff between GRIDCOPULA versions 1.0.1 dated 2024-04-05 and 1.1.0 dated 2025-09-13
GRIDCOPULA-1.0.1/GRIDCOPULA/R/calculate_ls.R |only GRIDCOPULA-1.0.1/GRIDCOPULA/R/calculate_pfeifer.R |only GRIDCOPULA-1.1.0/GRIDCOPULA/DESCRIPTION | 24 +-- GRIDCOPULA-1.1.0/GRIDCOPULA/MD5 | 35 ++-- GRIDCOPULA-1.1.0/GRIDCOPULA/NAMESPACE | 54 +++---- GRIDCOPULA-1.1.0/GRIDCOPULA/R/calculate_lsq.R |only GRIDCOPULA-1.1.0/GRIDCOPULA/R/calculate_ml.R | 3 GRIDCOPULA-1.1.0/GRIDCOPULA/R/calculate_pml.R |only GRIDCOPULA-1.1.0/GRIDCOPULA/R/estimate_gridCopula.R | 25 +++ GRIDCOPULA-1.1.0/GRIDCOPULA/R/measures_grid.R | 5 GRIDCOPULA-1.1.0/GRIDCOPULA/R/objective_pgrid.R |only GRIDCOPULA-1.1.0/GRIDCOPULA/README.md | 48 +++--- GRIDCOPULA-1.1.0/GRIDCOPULA/man/aic.grid.Rd | 70 ++++----- GRIDCOPULA-1.1.0/GRIDCOPULA/man/bic.grid.Rd | 72 ++++----- GRIDCOPULA-1.1.0/GRIDCOPULA/man/contour_image_grid.Rd | 110 +++++++------- GRIDCOPULA-1.1.0/GRIDCOPULA/man/data.grid.Rd | 76 +++++----- GRIDCOPULA-1.1.0/GRIDCOPULA/man/estimate.gridCopula.Rd | 128 ++++++++--------- GRIDCOPULA-1.1.0/GRIDCOPULA/man/image_color_grid.Rd | 80 +++++----- GRIDCOPULA-1.1.0/GRIDCOPULA/man/mosaic.grid.Rd | 76 +++++----- GRIDCOPULA-1.1.0/GRIDCOPULA/man/perspective.grid.Rd | 116 +++++++-------- GRIDCOPULA-1.1.0/GRIDCOPULA/man/r.grid.Rd | 82 +++++----- 21 files changed, 515 insertions(+), 489 deletions(-)
Title: Dedicated 'ggplot2' Methods for 'fixest' Objects
Description: Provides 'ggplot2' equivalents of fixest::coefplot() and fixest::iplot(),
for producing nice coefficient plots and interaction plots. Enables some
additional functionality and convenience features, including grouped
multi-'fixest' object faceting and programmatic updates to existing plots
(e.g., themes and aesthetics).
Author: Grant McDermott [aut, cre] ,
Laurent Berge [ctb],
Teun van den Brand [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
Diff between ggfixest versions 0.3.0 dated 2025-05-13 and 0.4.0 dated 2025-09-13
ggfixest-0.3.0/ggfixest/inst/tinytest/_tinysnapshot/ggcoefplot_did_iid.svg |only ggfixest-0.3.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_complex_kitchen.svg |only ggfixest-0.3.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_complex_kitchen_iid.svg |only ggfixest-0.4.0/ggfixest/DESCRIPTION | 14 ggfixest-0.4.0/ggfixest/MD5 | 59 ggfixest-0.4.0/ggfixest/NEWS.md | 24 ggfixest-0.4.0/ggfixest/R/ggcoefplot.R | 78 ggfixest-0.4.0/ggfixest/R/ggiplot.R | 16 ggfixest-0.4.0/ggfixest/R/iplot_data.R | 36 ggfixest-0.4.0/ggfixest/build/vignette.rds |binary ggfixest-0.4.0/ggfixest/inst/doc/ggiplot.R | 1 ggfixest-0.4.0/ggfixest/inst/doc/ggiplot.Rmd | 1 ggfixest-0.4.0/ggfixest/inst/doc/ggiplot.html | 59 ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggcoefplot_hc1.svg |only ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggcoefplot_vcov_multi.svg |only ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_complex.svg | 352 ++-- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_complex_mci.svg | 788 +++++----- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_facet.svg | 542 +++--- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_facet_ribbon.svg | 274 +-- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_single.svg | 196 +- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_single_kitchen.svg | 424 ++--- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_single_kitchen_ribbon.svg | 160 +- ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_single_ribbon.svg | 144 - ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_sw_pt_join1.svg | 148 - ggfixest-0.4.0/ggfixest/inst/tinytest/_tinysnapshot/ggiplot_multi_sw_pt_join2.svg | 148 - ggfixest-0.4.0/ggfixest/inst/tinytest/test_aggr_es.R | 3 ggfixest-0.4.0/ggfixest/inst/tinytest/test_fixest_multi.R | 2 ggfixest-0.4.0/ggfixest/inst/tinytest/test_ggcoefplot.R | 17 ggfixest-0.4.0/ggfixest/inst/tinytest/test_ggiplot.R | 40 ggfixest-0.4.0/ggfixest/inst/tinytest/test_iplot_data.R | 6 ggfixest-0.4.0/ggfixest/man/ggcoefplot.Rd | 72 ggfixest-0.4.0/ggfixest/man/iplot_data.Rd | 2 ggfixest-0.4.0/ggfixest/vignettes/ggiplot.Rmd | 1 33 files changed, 1815 insertions(+), 1792 deletions(-)
Title: Data Science Looks at Discrimination
Description: Statistical and graphical tools for detecting and measuring
discrimination and bias, be it racial, gender, age or other.
Detection and remediation of bias in machine learning algorithms.
'Python' interfaces available.
Author: Norm Matloff [aut] ,
Taha Abdullah [aut],
Arjun Ashok [aut],
Shubhada Martha [aut],
Aditya Mittal [aut, cre],
Billy Ouattara [aut],
Jonathan Tran [aut],
Brandon Zarate Estrada [aut]
Maintainer: Aditya Mittal <adityamittal2031@gmail.com>
Diff between dsld versions 0.2.2 dated 2024-09-13 and 1.0.0 dated 2025-09-13
dsld-0.2.2/dsld/R/Performance.R |only dsld-0.2.2/dsld/R/QeFairHelpers.R |only dsld-0.2.2/dsld/R/QeFairWrappers.R |only dsld-0.2.2/dsld/R/conddisp.r |only dsld-0.2.2/dsld/R/dsldCHunting.R |only dsld-0.2.2/dsld/R/dsldOHunting.R |only dsld-0.2.2/dsld/R/fairmlWrappers.R |only dsld-0.2.2/dsld/inst/Python |only dsld-0.2.2/dsld/man/dsldFairUtilTrade.Rd |only dsld-0.2.2/dsld/vignettes/fl.md |only dsld-0.2.2/dsld/vignettes/qs.md |only dsld-1.0.0/dsld/DESCRIPTION | 18 - dsld-1.0.0/dsld/MD5 | 100 ++++---- dsld-1.0.0/dsld/NAMESPACE | 3 dsld-1.0.0/dsld/R/Utils.R | 140 +++++++++++ dsld-1.0.0/dsld/R/dsldConditDisparity.R | 1 dsld-1.0.0/dsld/R/dsldConfounders.R | 177 -------------- dsld-1.0.0/dsld/R/dsldDensitybyS.R |only dsld-1.0.0/dsld/R/dsldFairML.R |only dsld-1.0.0/dsld/R/dsldFairUtils.R |only dsld-1.0.0/dsld/R/dsldFreqPCoord.R | 2 dsld-1.0.0/dsld/R/dsldFrequencybyS.R |only dsld-1.0.0/dsld/R/dsldHunting.R |only dsld-1.0.0/dsld/R/dsldLinear.R | 19 + dsld-1.0.0/dsld/R/dsldLogit.R | 20 + dsld-1.0.0/dsld/R/dsldML.R | 12 - dsld-1.0.0/dsld/R/dsldQeFairML.R |only dsld-1.0.0/dsld/R/onAttach.R |only dsld-1.0.0/dsld/README.md | 348 +++++++++++++++++++---------- dsld-1.0.0/dsld/build/vignette.rds |binary dsld-1.0.0/dsld/inst/README.md |only dsld-1.0.0/dsld/inst/doc/Quick_Start.html | 7 dsld-1.0.0/dsld/inst/examples |only dsld-1.0.0/dsld/inst/pyproject.toml |only dsld-1.0.0/dsld/inst/src |only dsld-1.0.0/dsld/man/dsldBnlearn.Rd | 3 dsld-1.0.0/dsld/man/dsldConditDisparity.Rd | 12 - dsld-1.0.0/dsld/man/dsldEDFFair.Rd | 101 +++++--- dsld-1.0.0/dsld/man/dsldFairML.Rd | 74 +++++- dsld-1.0.0/dsld/man/dsldFairUtils.Rd |only dsld-1.0.0/dsld/man/dsldFrequencyByS.Rd | 2 dsld-1.0.0/dsld/man/dsldLinear.Rd | 12 - dsld-1.0.0/dsld/man/dsldLogit.Rd | 21 + dsld-1.0.0/dsld/man/dsldML.Rd | 14 - 44 files changed, 643 insertions(+), 443 deletions(-)
Title: Plot Event Times on a 24-Hour Clock
Description: Provides a novel visualization technique for plotting timestamped events
on a 24-hour circular clock face. This is particularly useful for analyzing
daily patterns, event clustering, and gaps in temporal data. The package
also generalizes this approach to create cyclic charts for other periods,
including weekly and monthly cycles, enabling effective event planning and
pattern analysis across multiple time frames.
Author: Abdullah Al Mahmud [aut, cre, cph]
Maintainer: Abdullah Al Mahmud <almahmud.sbi@gmail.com>
Diff between clockplot versions 0.7.2 dated 2025-09-09 and 0.8.3 dated 2025-09-13
DESCRIPTION | 8 +-- MD5 | 48 ++++++++++----------- NAMESPACE | 3 + R/clock_chart.R | 8 +-- R/clock_chart_col.R | 26 +++++++---- R/clock_chart_qlt.R | 8 +-- R/clock_chart_qnt.R | 41 ++++++++++++------ R/cyclic_chart.R | 42 ++++++++++-------- R/day_chart.R | 49 ++++++++++++--------- R/plan_day.R | 71 ++++++++++++++++++------------- R/plan_week.R | 18 ++++---- R/week_chart.R | 36 ++++++++-------- R/year_chart.R | 62 +++++++++++++-------------- README.md | 8 +++ inst/doc/clockchart-construction.html | 13 +++-- inst/doc/clockplot.html | 9 ++-- man/clock_chart.Rd | 2 man/clock_chart_col.Rd | 2 man/clock_chart_qnt.Rd | 11 ++-- man/clockplot-package.Rd | 2 man/day_chart.Rd | 2 man/plan_day.Rd | 9 ++-- man/week_chart.Rd | 2 man/year_chart.Rd | 20 ++++---- tests/testthat/test-week_chart.R | 76 ++++++++++++++++++++++++---------- 25 files changed, 334 insertions(+), 242 deletions(-)
Title: Initiation à La Statistique Avec R
Description: Datasets and functions for the book "Initiation à la Statistique avec R", F. Bertrand and M. Maumy-Bertrand (2022, ISBN:978-2100782826 Dunod, fourth edition).
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between BioStatR versions 4.0.2 dated 2025-08-20 and 4.1.0 dated 2025-09-13
DESCRIPTION | 17 +++++++------ MD5 | 59 ++++++++++++++++++++++++++++++++---------------- NEWS.md | 6 ++++ R/binom.ci.R | 2 - R/cvar.R | 2 - R/eta2.R | 9 ++++--- R/gg_qqplot.R | 7 +++-- R/panel.hist.R | 9 ++++--- R/plotcdf2.R | 2 - R/poi.ci.R | 2 - inst/CITATION | 6 ++++ inst/_pkgdown.yml | 5 ++++ man/BioStatR-package.Rd | 4 +-- man/binom.ci.Rd | 2 - man/cvar.Rd | 2 - man/eta2.Rd | 4 +-- man/gg_qqplot.Rd | 4 +-- man/panel.hist.Rd | 4 +-- man/plotcdf2.Rd | 2 - man/poi.ci.Rd | 2 - tests |only 21 files changed, 96 insertions(+), 54 deletions(-)
Title: Access Argentinian Data via APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including the 'ArgentinaDatos API',
'REST Countries API', and 'World Bank API' related to Argentina's exchange rates, inflation,
political figures, holidays, economic indicators, and general country-level statistics.
Additionally, the package includes curated datasets related to Argentina, covering topics
such as economic indicators, biodiversity, agriculture, human rights, genetic data, and
consumer prices. The package supports research and analysis focused on Argentina by
integrating open APIs with high-quality datasets from various domains.
For more details on the APIs, see:
'ArgentinaDatos API' <https://argentinadatos.com/>,
'REST Countries API' <https://restcountries.com/>,
and 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between ArgentinAPI versions 0.1.0 dated 2025-07-08 and 0.2.0 dated 2025-09-13
ArgentinAPI-0.1.0/ArgentinAPI/R/get_country_info.R |only ArgentinAPI-0.1.0/ArgentinAPI/man/get_country_info.Rd |only ArgentinAPI-0.1.0/ArgentinAPI/tests/testthat/test-get_country_info.R |only ArgentinAPI-0.2.0/ArgentinAPI/DESCRIPTION | 30 - ArgentinAPI-0.2.0/ArgentinAPI/MD5 | 100 +++--- ArgentinAPI-0.2.0/ArgentinAPI/NAMESPACE | 14 ArgentinAPI-0.2.0/ArgentinAPI/NEWS.md |only ArgentinAPI-0.2.0/ArgentinAPI/R/argentinapi-package.R | 12 ArgentinAPI-0.2.0/ArgentinAPI/R/data-documentation.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_child_mortality.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_energy_use.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_gdp.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_hospital_beds.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_life_expectancy.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_population.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentina_unemployment.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentine_deputies.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentine_senators.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/get_argentinian_holidays.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/get_country_info_ar.R |only ArgentinAPI-0.2.0/ArgentinAPI/R/get_presidential_events.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/get_usd_exchange_rates.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/R/utils.R | 31 + ArgentinAPI-0.2.0/ArgentinAPI/R/view_datasets_ArgentinAPI.R | 4 ArgentinAPI-0.2.0/ArgentinAPI/README.md | 41 +- ArgentinAPI-0.2.0/ArgentinAPI/build/vignette.rds |binary ArgentinAPI-0.2.0/ArgentinAPI/inst/CITATION | 4 ArgentinAPI-0.2.0/ArgentinAPI/inst/doc/ArgentinAPI_vignette.R | 15 ArgentinAPI-0.2.0/ArgentinAPI/inst/doc/ArgentinAPI_vignette.Rmd | 60 +++ ArgentinAPI-0.2.0/ArgentinAPI/inst/doc/ArgentinAPI_vignette.html | 161 ++++++---- ArgentinAPI-0.2.0/ArgentinAPI/inst/licenses/LICENSE | 2 ArgentinAPI-0.2.0/ArgentinAPI/inst/licenses/LICENSE.md | 13 ArgentinAPI-0.2.0/ArgentinAPI/man/ArgentinAPI.Rd | 64 +-- ArgentinAPI-0.2.0/ArgentinAPI/man/Argentina_CPI_ts.Rd | 58 +-- ArgentinAPI-0.2.0/ArgentinAPI/man/Argentina_taxes_df.Rd | 56 +-- ArgentinAPI-0.2.0/ArgentinAPI/man/STRs_argentina_list.Rd | 58 +-- ArgentinAPI-0.2.0/ArgentinAPI/man/corn_nitrogen_df.Rd | 74 ++-- ArgentinAPI-0.2.0/ArgentinAPI/man/detention_centers_tbl_df.Rd | 72 ++-- ArgentinAPI-0.2.0/ArgentinAPI/man/figures/logo.png |binary ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_child_mortality.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_energy_use.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_gdp.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_hospital_beds.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_life_expectancy.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_population.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentina_unemployment.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentine_deputies.Rd | 90 ++--- ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentine_senators.Rd | 92 ++--- ArgentinAPI-0.2.0/ArgentinAPI/man/get_argentinian_holidays.Rd | 100 +++--- ArgentinAPI-0.2.0/ArgentinAPI/man/get_country_info_ar.Rd |only ArgentinAPI-0.2.0/ArgentinAPI/man/get_presidential_events.Rd | 88 ++--- ArgentinAPI-0.2.0/ArgentinAPI/man/get_usd_exchange_rates.Rd | 88 ++--- ArgentinAPI-0.2.0/ArgentinAPI/man/pollination_matrix.Rd | 64 +-- ArgentinAPI-0.2.0/ArgentinAPI/man/repression_victims_tbl_df.Rd | 98 +++--- ArgentinAPI-0.2.0/ArgentinAPI/man/view_datasets_ArgentinAPI.Rd | 46 +- ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat.R | 24 - ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_child_mortality.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_energy_use.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_gdp.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_hospital_beds.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_life_expectancy.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_population.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_argentina_unemployment.R |only ArgentinAPI-0.2.0/ArgentinAPI/tests/testthat/test-get_country_info_ar.R |only ArgentinAPI-0.2.0/ArgentinAPI/vignettes/ArgentinAPI_vignette.Rmd | 60 +++ 65 files changed, 941 insertions(+), 702 deletions(-)
Title: Bootstrap Hyperparameter Selection for PLS Models and Extensions
Description: Several implementations of non-parametric stable bootstrap-based techniques to determine the numbers of components for Partial Least Squares linear or generalized linear regression models as well as and sparse Partial Least Squares linear or generalized linear regression models. The package collects techniques that were published in a book chapter (Magnanensi et al. 2016, 'The Multiple Facets of Partial Least Squares and Related Methods', <doi:10.1007/978-3-319-40643-5_18>) and two articles (Magnanensi et al. 2017, 'Statistics and Computing', <doi:10.1007/s11222-016-9651-4>) and (Magnanensi et al. 2021, 'Frontiers in Applied Mathematics and Statistics', <doi:10.3389/fams.2021.693126>).
Author: Frederic Bertrand [cre, aut] ,
Jeremy Magnanensi [aut],
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between bootPLS versions 1.0.1 dated 2024-09-24 and 1.1.0 dated 2025-09-13
DESCRIPTION | 24 +++++++----- MD5 | 81 ++++++++++++++++++++++++------------------ NEWS.md | 6 +++ R/YTplsR.R | 2 - R/YTplsRglm.R | 2 - R/YXadaptplsR.R | 2 - R/bootstrap_functions.R | 8 ++-- R/internal-bootPLS.R | 2 - R/sgpls_bootYT.R | 8 ++-- R/simul_data_UniYX_gamma.R | 4 +- R/spls.R | 4 +- README.md | 4 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 9 +++- inst/_pkgdown.yml |only inst/doc/UseNbcomp.Rmd | 2 - inst/doc/UseNbcomp.html | 8 ++-- man/bootPLS-package.Rd | 4 +- man/coefs.plsR.CSim.Rd | 2 - man/coefs.plsR.adapt.ncomp.Rd | 2 - man/coefs.plsRglm.CSim.Rd | 2 - man/coefs.sgpls.CSim.Rd | 2 - man/internal-bootPLS.Rd | 2 - man/nbcomp.bootplsR.Rd | 2 - man/nbcomp.bootplsRglm.Rd | 2 - man/nbcomp.bootsgpls.Rd | 2 - man/nbcomp.bootsgpls.para.Rd | 2 - man/nbcomp.bootspls.Rd | 2 - man/nbcomp.bootspls.para.Rd | 2 - man/permcoefs.plsR.CSim.Rd | 2 - man/permcoefs.plsRglm.CSim.Rd | 2 - man/permcoefs.sgpls.CSim.Rd | 2 - man/simul_data_UniYX_gamma.Rd | 4 +- tests |only vignettes/UseNbcomp.Rmd | 2 - 36 files changed, 117 insertions(+), 87 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius. In addition to this, we also provide a simple way (Jones and Hulme, 1996) to grid the irregularly-spaced data points onto regular latitude-longitude grids by averaging all stations in grid-boxes.
Author: Panfeng Zhang [aut, cre] ,
Guoyu Ren [ctb],
Yun Qin [ctb],
Chenchen Ren [ctb],
Xiang Zheng [ctb]
Maintainer: Panfeng Zhang <zhangpf08@163.com>
Diff between adw versions 0.4.0 dated 2024-04-15 and 0.4.1 dated 2025-09-13
DESCRIPTION | 19 ++++++++++--------- MD5 | 18 +++++++++--------- NEWS.md | 38 ++++++++++++++++++++++++-------------- R/adw.R | 4 ++++ README.md | 2 +- build/vignette.rds |binary inst/doc/Introduction.R | 2 +- inst/doc/Introduction.Rmd | 6 ++++-- inst/doc/Introduction.html | 24 ++++++++++++++---------- vignettes/Introduction.Rmd | 6 ++++-- 10 files changed, 71 insertions(+), 48 deletions(-)
Title: Utility Functions to Support and Extend the 'rbmi' Package
Description: Provides utility functions that extend the capabilities of the
reference-based multiple imputation package 'rbmi'. It supports clinical
trial analysis workflows with functions for managing imputed datasets,
applying analysis methods across imputations, and tidying results for
reporting.
Author: Mark Baillie [aut, cre, cph] ,
Tobias Muetze [aut] ,
Jack Talboys [aut],
Lukas A. Widmer [ctb]
Maintainer: Mark Baillie <bailliem@gmail.com>
Diff between rbmiUtils versions 0.1.4 dated 2025-05-23 and 0.1.6 dated 2025-09-13
DESCRIPTION | 6 - MD5 | 13 +-- NEWS.md | 6 - README.md | 23 ++--- inst/WORDLIST | 3 inst/doc/analyse2.html | 14 +-- tests/testthat/test-analysis_utils.R |only tests/testthat/test-utils.R | 147 +++++++++++++++++++++++++++++++++++ 8 files changed, 180 insertions(+), 32 deletions(-)
Title: Creates Generative Art Data
Description: Create data that displays generative art when mapped into a 'ggplot2' plot. Functionality includes specialized data frame creation for geometric shapes, tools that define artistic color palettes, tools for geometrically transforming data, and other miscellaneous tools that are helpful when using 'ggplot2' for generative art.
Author: Meghan Harris [aut, cre, cph]
Maintainer: Meghan Harris <meghanha01@gmail.com>
Diff between artpack versions 0.1.0 dated 2023-08-24 and 0.2.0 dated 2025-09-13
DESCRIPTION | 22 - LICENSE | 4 MD5 | 135 ++++-- NAMESPACE | 16 NEWS.md | 99 +++- R/art_pals.R | 512 +++++++++++------------- R/artpack-package.R | 25 - R/circle_data.R | 33 - R/grid_maker.R | 146 ++----- R/group_numbers.R | 179 +++++--- R/group_sample.R |only R/group_slice.R |only R/packer.R | 23 - R/point_in_polygon.R |only R/resizer.R |only R/rotator.R | 462 ++++++++++------------ R/seq_bounce.R |only R/set_brightness.R |only R/set_saturation.R |only R/square_data.R | 22 - R/utils-helpers.R | 557 ++++++++++++++++++++++++++- R/wave_data.R | 26 - README.md | 159 +++++-- build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 11 inst/doc/brief_examples.R | 133 ++++-- inst/doc/brief_examples.Rmd | 324 ++++++++------- inst/doc/brief_examples.html | 277 +++++++------ inst/doc/geom_chart.R |only inst/doc/geom_chart.Rmd |only inst/doc/geom_chart.html |only inst/doc/see_artpack_in_action.R |only inst/doc/see_artpack_in_action.Rmd |only inst/doc/see_artpack_in_action.html |only man/art_pals.Rd | 22 - man/artpack-package.Rd | 3 man/circle_data.Rd | 12 man/figures/README-circle-ex-1.png |only man/figures/README-compilation-1.png |binary man/figures/README-rotator-1.png |binary man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/grid_maker.Rd | 2 man/group_numbers.Rd | 8 man/group_sample.Rd |only man/group_slice.Rd |only man/packer.Rd | 4 man/point_in_polygon.Rd |only man/resizer.Rd |only man/rotator.Rd | 2 man/seq_bounce.Rd |only man/set_brightness.Rd |only man/set_saturation.Rd |only man/square_data.Rd | 2 man/wave_data.Rd | 4 tests/spelling.Rout.save |only tests/testthat.R | 1 tests/testthat/_snaps/art_pals.md | 144 ++++-- tests/testthat/_snaps/circle_data.md | 97 ++-- tests/testthat/_snaps/grid_maker.md | 65 +-- tests/testthat/_snaps/group_numbers.md | 49 ++ tests/testthat/_snaps/group_sample.md |only tests/testthat/_snaps/group_slice.md |only tests/testthat/_snaps/packer.md | 55 +- tests/testthat/_snaps/point_in_polygon.md |only tests/testthat/_snaps/resizer.md |only tests/testthat/_snaps/rotator.md | 48 +- tests/testthat/_snaps/seq_bounce.md |only tests/testthat/_snaps/set_brightness.md |only tests/testthat/_snaps/set_saturation.md |only tests/testthat/_snaps/square_data.md | 97 ++-- tests/testthat/_snaps/utils-helpers.md |only tests/testthat/_snaps/wave_data.md | 60 +- tests/testthat/test-art_pals.R | 359 +++++++++++------ tests/testthat/test-group_numbers.R | 93 ++++ tests/testthat/test-group_sample.R |only tests/testthat/test-group_slice.R |only tests/testthat/test-point_in_polygon.R |only tests/testthat/test-resizer.R |only tests/testthat/test-rotator.R | 43 +- tests/testthat/test-seq_bounce.R |only tests/testthat/test-set_brightness.R |only tests/testthat/test-set_saturation.R |only tests/testthat/test-square_data.R | 618 +++++++++++++++--------------- tests/testthat/test-utils-helpers.R |only vignettes/brief_examples.Rmd | 324 ++++++++------- vignettes/geom_chart.Rmd |only vignettes/see_artpack_in_action.Rmd |only 91 files changed, 3243 insertions(+), 2034 deletions(-)
Title: Apache Thrift Client Server
Description: Pure R implementation of Apache Thrift.
This library doesn't require any code generation.
To learn more about Thrift go to <https://thrift.apache.org>.
Author: Marek Jagielski [aut, cre, cph],
Lixin Yu [aut, cph]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Diff between thriftr versions 1.1.7 dated 2022-05-10 and 1.1.8 dated 2025-09-13
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- man/TBinaryProtocol.Rd | 2 +- man/TBinaryProtocolFactory.Rd | 2 +- man/TBufferedTransport.Rd | 2 +- man/TBufferedTransportFactory.Rd | 2 +- man/TClient.Rd | 2 +- man/TMemoryBuffer.Rd | 2 +- man/TPayload.Rd | 2 +- man/TServerSocket.Rd | 2 +- man/TSocket.Rd | 2 +- 11 files changed, 24 insertions(+), 24 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference. Details can be found in Arel-Bundock, Greifer, and Heiss (2024) <doi:10.18637/jss.v111.i09>.
Author: Vincent Arel-Bundock [aut, cre, cph] ,
Noah Greifer [ctb] ,
Etienne Bacher [ctb] ,
Grant McDermott [ctb] ,
Andrew Heiss [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.29.0 dated 2025-08-28 and 0.30.0 dated 2025-09-13
marginaleffects-0.29.0/marginaleffects/R/RcppExports.R |only marginaleffects-0.29.0/marginaleffects/R/methods_stats.R |only marginaleffects-0.29.0/marginaleffects/src |only marginaleffects-0.30.0/marginaleffects/DESCRIPTION | 49 +++--- marginaleffects-0.30.0/marginaleffects/MD5 | 74 ++++------ marginaleffects-0.30.0/marginaleffects/NAMESPACE | 8 - marginaleffects-0.30.0/marginaleffects/NEWS.md | 15 ++ marginaleffects-0.30.0/marginaleffects/R/autodiff.R |only marginaleffects-0.30.0/marginaleffects/R/comparisons.R | 6 marginaleffects-0.30.0/marginaleffects/R/components.R | 2 marginaleffects-0.30.0/marginaleffects/R/datagrid.R | 11 - marginaleffects-0.30.0/marginaleffects/R/equivalence.R | 4 marginaleffects-0.30.0/marginaleffects/R/get_comparisons.R | 3 marginaleffects-0.30.0/marginaleffects/R/get_model_matrix.R | 7 marginaleffects-0.30.0/marginaleffects/R/get_se_delta.R | 31 ++-- marginaleffects-0.30.0/marginaleffects/R/hypothesis_formula.R | 2 marginaleffects-0.30.0/marginaleffects/R/inferences.R | 1 marginaleffects-0.30.0/marginaleffects/R/inferences_rsample.R | 12 + marginaleffects-0.30.0/marginaleffects/R/methods_aaa.R |only marginaleffects-0.30.0/marginaleffects/R/methods_betareg.R | 1 marginaleffects-0.30.0/marginaleffects/R/methods_brms.R | 8 - marginaleffects-0.30.0/marginaleffects/R/methods_ivreg.R |only marginaleffects-0.30.0/marginaleffects/R/methods_quantreg.R | 28 +-- marginaleffects-0.30.0/marginaleffects/R/methods_rms.R | 66 ++++++++ marginaleffects-0.30.0/marginaleffects/R/package.R | 5 marginaleffects-0.30.0/marginaleffects/R/predictions.R | 16 +- marginaleffects-0.30.0/marginaleffects/R/sanitize_variables.R | 7 marginaleffects-0.30.0/marginaleffects/R/sanity_model.R | 2 marginaleffects-0.30.0/marginaleffects/R/type_dictionary.R | 1 marginaleffects-0.30.0/marginaleffects/R/utils.R | 5 marginaleffects-0.30.0/marginaleffects/R/zzz.R | 9 + marginaleffects-0.30.0/marginaleffects/inst/WORDLIST | 4 marginaleffects-0.30.0/marginaleffects/inst/doc/model_to_meaning.Rmd | 32 ++-- marginaleffects-0.30.0/marginaleffects/inst/doc/model_to_meaning.html | 53 ++++--- marginaleffects-0.30.0/marginaleffects/man/autodiff.Rd |only marginaleffects-0.30.0/marginaleffects/man/get_coef.Rd | 14 - marginaleffects-0.30.0/marginaleffects/man/get_predict.Rd | 18 +- marginaleffects-0.30.0/marginaleffects/man/inferences.Rd | 37 +++++ marginaleffects-0.30.0/marginaleffects/man/set_coef.Rd | 34 ++-- marginaleffects-0.30.0/marginaleffects/vignettes/model_to_meaning.Rmd | 32 ++-- 40 files changed, 402 insertions(+), 195 deletions(-)
More information about marginaleffects at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-15 0.1.1
2025-07-11 0.1.0
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2025)
<doi:10.1111/geb.70035> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.2.0 dated 2025-07-19 and 1.3.0 dated 2025-09-13
tinyVAST-1.2.0/tinyVAST/tests/testthat/Rplots.pdf |only tinyVAST-1.3.0/tinyVAST/DESCRIPTION | 19 tinyVAST-1.3.0/tinyVAST/MD5 | 87 +-- tinyVAST-1.3.0/tinyVAST/NAMESPACE | 7 tinyVAST-1.3.0/tinyVAST/NEWS.md | 17 tinyVAST-1.3.0/tinyVAST/R/data.R | 47 + tinyVAST-1.3.0/tinyVAST/R/fit.R | 175 ++++-- tinyVAST-1.3.0/tinyVAST/R/internal.R | 41 - tinyVAST-1.3.0/tinyVAST/R/make_eof_ram.R | 2 tinyVAST-1.3.0/tinyVAST/R/mesh.R |only tinyVAST-1.3.0/tinyVAST/R/predict.R | 21 tinyVAST-1.3.0/tinyVAST/R/project.R | 12 tinyVAST-1.3.0/tinyVAST/R/utility.R | 84 ++ tinyVAST-1.3.0/tinyVAST/data/alaska_sponge_coral_fish.rda |only tinyVAST-1.3.0/tinyVAST/data/bering_sea_capelin_forecasts.rda |only tinyVAST-1.3.0/tinyVAST/data/red_grouper_diet.rda |only tinyVAST-1.3.0/tinyVAST/inst/doc/dsem.R | 4 tinyVAST-1.3.0/tinyVAST/inst/doc/dsem.Rmd | 6 tinyVAST-1.3.0/tinyVAST/inst/doc/dsem.html | 5 tinyVAST-1.3.0/tinyVAST/inst/doc/mgcv.R | 4 tinyVAST-1.3.0/tinyVAST/inst/doc/mgcv.Rmd | 7 tinyVAST-1.3.0/tinyVAST/inst/doc/mgcv.html | 3 tinyVAST-1.3.0/tinyVAST/inst/doc/model-description.html | 5 tinyVAST-1.3.0/tinyVAST/inst/doc/multiple_data.R | 4 tinyVAST-1.3.0/tinyVAST/inst/doc/multiple_data.Rmd | 9 tinyVAST-1.3.0/tinyVAST/inst/doc/multiple_data.html | 3 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial.R | 4 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial.Rmd | 7 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial.html | 5 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial_factor_analysis.R | 4 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial_factor_analysis.Rmd | 6 tinyVAST-1.3.0/tinyVAST/inst/doc/spatial_factor_analysis.html | 11 tinyVAST-1.3.0/tinyVAST/man/add_mesh_covariates.Rd |only tinyVAST-1.3.0/tinyVAST/man/alaska_sponge_coral_fish.Rd |only tinyVAST-1.3.0/tinyVAST/man/bering_sea_capelin_forecasts.Rd |only tinyVAST-1.3.0/tinyVAST/man/conditional_gmrf.Rd | 70 +- tinyVAST-1.3.0/tinyVAST/man/predict.tinyVAST.Rd | 9 tinyVAST-1.3.0/tinyVAST/man/project.Rd | 241 ++++---- tinyVAST-1.3.0/tinyVAST/man/red_grouper_diet.Rd |only tinyVAST-1.3.0/tinyVAST/man/spatial_cor.Rd |only tinyVAST-1.3.0/tinyVAST/man/tinyVAST.Rd | 64 +- tinyVAST-1.3.0/tinyVAST/man/tinyVASTcontrol.Rd | 19 tinyVAST-1.3.0/tinyVAST/src/tinyVAST.cpp | 289 +++++++--- tinyVAST-1.3.0/tinyVAST/tests/testthat/test-mesh.R |only tinyVAST-1.3.0/tinyVAST/vignettes/dsem.Rmd | 6 tinyVAST-1.3.0/tinyVAST/vignettes/mgcv.Rmd | 7 tinyVAST-1.3.0/tinyVAST/vignettes/multiple_data.Rmd | 9 tinyVAST-1.3.0/tinyVAST/vignettes/spatial.Rmd | 7 tinyVAST-1.3.0/tinyVAST/vignettes/spatial_factor_analysis.Rmd | 6 tinyVAST-1.3.0/tinyVAST/vignettes/tinyVAST_vignettes.bib | 34 - 50 files changed, 963 insertions(+), 397 deletions(-)
Title: Tile Grid Maps for East Caucasian Languages
Description: Generates tile maps for the East Caucasian language family, inspired by the Typological Atlas of the Languages of Daghestan (TALD, <https://lingconlab.ru/tald/>). It leverages 'ggplot2' to create visually informative maps, displaying rectangles for each language and allowing for color-coding based on linguistic features. The package includes a built-in dataset of 56 languages and the template for their distribution and provides flexibility to customize the tile map's appearance. The default template can be modified via the ability to hide or rename languages. It's designed to be used with external data tables containing language information and features, offering a tool for visualizing the geographic distribution and linguistic characteristics of East Caucasian languages.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between RCaucTile versions 1.0.0 dated 2025-08-27 and 1.0.1 dated 2025-09-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 3 +++ R/ec_tile_map.R | 5 ----- README.md | 1 + 5 files changed, 12 insertions(+), 13 deletions(-)
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Description: A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.
Author: Carmine Fruggiero [aut, cre],
Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>
Diff between inDAGO versions 1.0.0 dated 2025-07-05 and 1.0.1 dated 2025-09-13
DESCRIPTION | 26 MD5 | 63 - NAMESPACE | 266 +--- R/CombinedAlignment.R | 1313 ++++++++------------- R/CorrPlotHeatmap.R | 5 R/CorrPlotHeatmaply.R | 5 R/EDAServerLogic.R | 24 R/HeatmapExp.R | 8 R/HeatmapExpPlotly.R | 6 R/IndexingBulkUserInterface.R | 366 ++--- R/IndexingCombinedUserInterface.R | 476 +++---- R/IndexingSequentialUserInterface.R | 446 +++---- R/Saturation.R | 6 R/SequentialAlignment.R | 1080 +++++++++-------- R/SummarizationUserInterface.R | 3 R/app.R | 79 - R/barplotExp.R | 7 R/boxplotExp.R | 7 R/mappingBulkServerLogic.R | 506 ++++---- R/mappingBulkUserInterface.R | 692 +++++------ R/mappingCombinedServerLogic.R | 544 ++++---- R/mappingCombinedUserInterface.R | 704 +++++------ R/mappingSequentialServerLogic.R | 640 +++++----- R/mappingSequentialUserInterface.R | 752 ++++++------ R/mdsPlot.R | 8 R/qualityControlUserInterface.R | 2248 ++++++++++++++++++------------------ R/zzz.R |only man/CombinedAlignment.Rd | 10 man/CorrPlotHeatmap.Rd | 5 man/CorrPlotHeatmaply.Rd | 4 man/HeatmapExp.Rd | 5 man/HeatmapExpPlotly.Rd | 4 man/SequentialAlignment.Rd | 6 33 files changed, 5018 insertions(+), 5296 deletions(-)
Title: Easy Access to NetCDF Files with CF Metadata Conventions
Description: Network Common Data Form ('netCDF') files are widely used for
scientific data. Library-level access in R is provided through packages
'RNetCDF' and 'ncdf4'. Package 'ncdfCF' is built on top of 'RNetCDF' and
makes the data and its attributes available as a set of R6 classes that are
informed by the Climate and Forecasting Metadata Conventions. Access to the
data uses standard R subsetting operators and common function forms.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between ncdfCF versions 0.6.1 dated 2025-06-15 and 0.7.0 dated 2025-09-13
ncdfCF-0.6.1/ncdfCF/R/CFArray.R |only ncdfCF-0.6.1/ncdfCF/R/CFVariableBase.R |only ncdfCF-0.6.1/ncdfCF/R/NCUDT.R |only ncdfCF-0.6.1/ncdfCF/man/CFArray.Rd |only ncdfCF-0.6.1/ncdfCF/man/CFVariableBase.Rd |only ncdfCF-0.6.1/ncdfCF/man/NCUDT.Rd |only ncdfCF-0.6.1/ncdfCF/man/makeGroup.Rd |only ncdfCF-0.6.1/ncdfCF/vignettes/ncdfCF-datamodel-0.5.png |only ncdfCF-0.7.0/ncdfCF/DESCRIPTION | 31 ncdfCF-0.7.0/ncdfCF/MD5 | 170 +- ncdfCF-0.7.0/ncdfCF/NAMESPACE | 10 ncdfCF-0.7.0/ncdfCF/NEWS.md | 29 ncdfCF-0.7.0/ncdfCF/R/AOI.R | 119 - ncdfCF-0.7.0/ncdfCF/R/AOImethod.R | 4 ncdfCF-0.7.0/ncdfCF/R/CFAuxiliaryLongLat.R | 319 ++-- ncdfCF-0.7.0/ncdfCF/R/CFAxis.R | 371 +++- ncdfCF-0.7.0/ncdfCF/R/CFAxisCharacter.R | 137 + ncdfCF-0.7.0/ncdfCF/R/CFAxisDiscrete.R | 177 +- ncdfCF-0.7.0/ncdfCF/R/CFAxisLatitude.R | 150 +- ncdfCF-0.7.0/ncdfCF/R/CFAxisLongitude.R | 155 +- ncdfCF-0.7.0/ncdfCF/R/CFAxisNumeric.R | 274 ++- ncdfCF-0.7.0/ncdfCF/R/CFAxisTime.R | 273 ++- ncdfCF-0.7.0/ncdfCF/R/CFAxisVertical.R | 447 +++++- ncdfCF-0.7.0/ncdfCF/R/CFBounds.R | 228 ++- ncdfCF-0.7.0/ncdfCF/R/CFCellMeasure.R | 150 +- ncdfCF-0.7.0/ncdfCF/R/CFDataset.R | 74 ncdfCF-0.7.0/ncdfCF/R/CFGridMapping.R | 62 ncdfCF-0.7.0/ncdfCF/R/CFLabel.R | 141 + ncdfCF-0.7.0/ncdfCF/R/CFObject.R | 502 +++++- ncdfCF-0.7.0/ncdfCF/R/CFResource.R | 12 ncdfCF-0.7.0/ncdfCF/R/CFStandardNames.R |only ncdfCF-0.7.0/ncdfCF/R/CFVariable.R | 1266 +++++++++++++---- ncdfCF-0.7.0/ncdfCF/R/CFVariableL3b.R | 282 +-- ncdfCF-0.7.0/ncdfCF/R/CFVerticalParametricTerm.R |only ncdfCF-0.7.0/ncdfCF/R/NCDimension.R | 76 - ncdfCF-0.7.0/ncdfCF/R/NCGroup.R | 116 + ncdfCF-0.7.0/ncdfCF/R/NCObject.R | 204 -- ncdfCF-0.7.0/ncdfCF/R/NCVariable.R | 185 +- ncdfCF-0.7.0/ncdfCF/R/makeCFObjects.R | 298 ++-- ncdfCF-0.7.0/ncdfCF/R/ncdfCF-package.R | 86 - ncdfCF-0.7.0/ncdfCF/R/ops.R |only ncdfCF-0.7.0/ncdfCF/R/readCF.R | 481 +++--- ncdfCF-0.7.0/ncdfCF/R/utils.R | 52 ncdfCF-0.7.0/ncdfCF/R/zzz.R | 16 ncdfCF-0.7.0/ncdfCF/README.md | 352 +++- ncdfCF-0.7.0/ncdfCF/TODO | 40 ncdfCF-0.7.0/ncdfCF/build/vignette.rds |binary ncdfCF-0.7.0/ncdfCF/inst/doc/R-CF.R | 6 ncdfCF-0.7.0/ncdfCF/inst/doc/R-CF.Rmd | 341 +--- ncdfCF-0.7.0/ncdfCF/inst/doc/R-CF.html | 272 ++- ncdfCF-0.7.0/ncdfCF/inst/doc/Using_ncdfCF.R | 25 ncdfCF-0.7.0/ncdfCF/inst/doc/Using_ncdfCF.Rmd | 62 ncdfCF-0.7.0/ncdfCF/inst/doc/Using_ncdfCF.html | 480 +++--- ncdfCF-0.7.0/ncdfCF/man/CFAuxiliaryLongLat.Rd | 93 - ncdfCF-0.7.0/ncdfCF/man/CFAxis.Rd | 241 ++- ncdfCF-0.7.0/ncdfCF/man/CFAxisCharacter.Rd | 167 +- ncdfCF-0.7.0/ncdfCF/man/CFAxisDiscrete.Rd | 141 + ncdfCF-0.7.0/ncdfCF/man/CFAxisLatitude.Rd | 133 + ncdfCF-0.7.0/ncdfCF/man/CFAxisLongitude.Rd | 134 + ncdfCF-0.7.0/ncdfCF/man/CFAxisNumeric.Rd | 177 +- ncdfCF-0.7.0/ncdfCF/man/CFAxisTime.Rd | 147 + ncdfCF-0.7.0/ncdfCF/man/CFAxisVertical.Rd | 287 +++ ncdfCF-0.7.0/ncdfCF/man/CFBounds.Rd | 156 +- ncdfCF-0.7.0/ncdfCF/man/CFCellMeasure.Rd | 34 ncdfCF-0.7.0/ncdfCF/man/CFDataset.Rd | 15 ncdfCF-0.7.0/ncdfCF/man/CFGridMapping.Rd | 31 ncdfCF-0.7.0/ncdfCF/man/CFLabel.Rd | 88 - ncdfCF-0.7.0/ncdfCF/man/CFObject.Rd | 136 + ncdfCF-0.7.0/ncdfCF/man/CFResource.Rd | 18 ncdfCF-0.7.0/ncdfCF/man/CFStandardNames.Rd |only ncdfCF-0.7.0/ncdfCF/man/CFVariable.Rd | 570 ++++++- ncdfCF-0.7.0/ncdfCF/man/CFVariableL3b.Rd | 83 - ncdfCF-0.7.0/ncdfCF/man/CFVerticalParametricTerm.Rd |only ncdfCF-0.7.0/ncdfCF/man/NCDimension.Rd | 48 ncdfCF-0.7.0/ncdfCF/man/NCGroup.Rd | 87 - ncdfCF-0.7.0/ncdfCF/man/NCObject.Rd | 138 - ncdfCF-0.7.0/ncdfCF/man/NCVariable.Rd | 147 + ncdfCF-0.7.0/ncdfCF/man/arrayOps.Rd |only ncdfCF-0.7.0/ncdfCF/man/as_CF.Rd |only ncdfCF-0.7.0/ncdfCF/man/dimnames.Rd | 34 ncdfCF-0.7.0/ncdfCF/man/makeAxis.Rd | 30 ncdfCF-0.7.0/ncdfCF/man/makeCharacterAxis.Rd |only ncdfCF-0.7.0/ncdfCF/man/makeDiscreteAxis.Rd | 6 ncdfCF-0.7.0/ncdfCF/man/makeLatitudeAxis.Rd | 10 ncdfCF-0.7.0/ncdfCF/man/makeLongitudeAxis.Rd | 10 ncdfCF-0.7.0/ncdfCF/man/makeTimeAxis.Rd | 11 ncdfCF-0.7.0/ncdfCF/man/makeVerticalAxis.Rd |only ncdfCF-0.7.0/ncdfCF/man/ncdfCF-package.Rd | 88 - ncdfCF-0.7.0/ncdfCF/man/open_ncdf.Rd | 10 ncdfCF-0.7.0/ncdfCF/man/sub-sub-.CFDataset.Rd | 2 ncdfCF-0.7.0/ncdfCF/tests/testthat/test-CFobjects.R |only ncdfCF-0.7.0/ncdfCF/tests/testthat/test-all.R | 654 ++++---- ncdfCF-0.7.0/ncdfCF/vignettes/R-CF.Rmd | 341 +--- ncdfCF-0.7.0/ncdfCF/vignettes/Using_ncdfCF.Rmd | 62 ncdfCF-0.7.0/ncdfCF/vignettes/ncdfCF-datamodel-0.7.png |only ncdfCF-0.7.0/ncdfCF/vignettes/ncdfCF-hierarchy-0.7.png |only 96 files changed, 8301 insertions(+), 4503 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre] ,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.11.3 dated 2025-05-08 and 1.11.4 dated 2025-09-13
DESCRIPTION | 10 MD5 | 403 +++++++++++++------------- NEWS.md | 10 R/class_active.R | 6 R/class_auto.R | 3 R/class_aws.R | 14 R/class_aws_file.R | 9 R/class_backoff.R | 2 R/class_branch.R | 6 R/class_build.R | 3 R/class_builder.R | 80 ++++- R/class_cloud.R | 9 R/class_crew.R | 8 R/class_database.R | 30 + R/class_dynamic.R | 4 R/class_external.R | 3 R/class_feather.R | 10 R/class_frames.R | 2 R/class_fst.R | 3 R/class_fst_dt.R | 3 R/class_fst_tbl.R | 3 R/class_future.R | 6 R/class_gcp.R | 12 R/class_gcp_file.R | 9 R/class_glimpse.R | 12 R/class_group.R | 11 R/class_inspection.R | 31 +- R/class_keras.R | 3 R/class_list.R | 3 R/class_local.R | 3 R/class_mermaid.R | 7 R/class_meta.R | 8 R/class_network.R | 28 - R/class_null.R | 3 R/class_parquet.R | 10 R/class_pattern.R | 50 ++- R/class_pipeline.R | 39 +- R/class_prelocal.R | 6 R/class_qs.R | 3 R/class_queue.R | 27 - R/class_rds.R | 3 R/class_reporter.R | 39 -- R/class_resources_aws.R | 21 + R/class_scheduler.R | 2 R/class_settings.R | 2 R/class_stem.R | 39 +- R/class_store.R | 23 - R/class_store_file.R | 34 +- R/class_store_format_custom.R | 3 R/class_store_repository_cas.R | 9 R/class_target.R | 36 -- R/class_torch.R | 3 R/class_url.R | 28 - R/class_value.R | 3 R/class_vector.R | 6 R/class_visnetwork.R | 4 R/class_workspace.R | 2 R/rstudio_addin_tar_read.R | 2 R/tar_bind.R | 4 R/tar_branch_index.R | 2 R/tar_branches.R | 2 R/tar_config_get.R | 4 R/tar_delete.R | 10 R/tar_described_as.R | 2 R/tar_exist_objects.R | 4 R/tar_load.R | 5 R/tar_load_everything.R | 5 R/tar_load_raw.R | 7 R/tar_make.R | 55 ++- R/tar_make_interactive.R | 3 R/tar_manifest.R | 2 R/tar_mermaid.R | 2 R/tar_meta.R | 6 R/tar_objects.R | 4 R/tar_outdated.R | 20 - R/tar_pattern.R | 2 R/tar_process.R | 2 R/tar_progress.R | 2 R/tar_progress_branches.R | 12 R/tar_progress_summary.R | 2 R/tar_read.R | 5 R/tar_read_raw.R | 13 R/tar_renv.R | 23 - R/tar_resources_aws.R | 2 R/tar_sitrep.R | 2 R/tar_target.R | 3 R/tar_unversion.R | 3 R/tar_watch_server.R | 140 ++++----- R/utils_assert.R | 67 ++-- R/utils_aws.R | 57 +-- R/utils_callr.R | 21 - R/utils_cli.R | 12 R/utils_files.R | 13 R/utils_gcp.R | 12 R/utils_imports.R | 2 R/utils_language.R | 3 R/utils_retry.R | 4 R/utils_rstudio.R | 7 inst/WORDLIST | 1 inst/pipelines/use_targets.R | 2 man/tar_load.Rd | 4 man/tar_load_everything.Rd | 2 man/tar_make.Rd | 16 - man/tar_make_clustermq.Rd | 16 - man/tar_make_future.Rd | 16 - man/tar_mermaid.Rd | 17 - man/tar_network.Rd | 17 - man/tar_option_set.Rd | 3 man/tar_outdated.Rd | 17 - man/tar_read.Rd | 4 man/tar_renv.Rd | 23 - man/tar_sitrep.Rd | 17 - man/tar_target.Rd | 3 man/tar_visnetwork.Rd | 17 - tests/aws/test-aws_hpc.R | 47 +-- tests/aws/test-aws_long.R | 9 tests/aws/test-aws_meta.R | 336 +++++++++++---------- tests/aws/test-branching.R | 129 ++++---- tests/aws/test-class_aws_file.R | 64 ++-- tests/aws/test-class_aws_qs.R | 8 tests/gcp/test-class_gcp_file.R | 28 + tests/gcp/test-class_gcp_qs.R | 8 tests/gcp/test-gcp_hpc.R | 47 +-- tests/gcp/test-gcp_long.R | 9 tests/gcp/test-gcp_meta.R | 340 +++++++++++---------- tests/hpc/test-clustermq_local.R | 19 - tests/hpc/test-clustermq_sge.R | 36 +- tests/hpc/test-crew_local.R | 12 tests/hpc/test-crew_sge.R | 8 tests/hpc/test-future_sge.R | 19 - tests/interactive/test-backoff.R | 4 tests/interactive/test-debug.R | 13 tests/interactive/test-mermaid.R | 15 tests/interactive/test-print.R | 12 tests/interactive/test-reporter.R | 22 - tests/interactive/test-tar_poll.R | 15 tests/interactive/test-tar_watch.R | 37 +- tests/interactive/test-visnetwork.R | 15 tests/performance/test-memory.R | 4 tests/performance/test-stems.R | 3 tests/testthat/_targets |only tests/testthat/helper-pipelines.R | 2 tests/testthat/test-class_backoff.R | 4 tests/testthat/test-class_build.R | 4 tests/testthat/test-class_builder.R | 32 +- tests/testthat/test-class_clustermq.R | 58 ++- tests/testthat/test-class_crew.R | 19 - tests/testthat/test-class_database.R | 8 tests/testthat/test-class_future.R | 19 - tests/testthat/test-class_glimpse.R | 15 tests/testthat/test-class_inspection.R | 45 +- tests/testthat/test-class_junction.R | 2 tests/testthat/test-class_meta.R | 12 tests/testthat/test-class_parallel.R | 9 tests/testthat/test-class_pipeline.R | 2 tests/testthat/test-class_reference.R | 3 tests/testthat/test-class_runtime.R | 2 tests/testthat/test-class_stem.R | 14 tests/testthat/test-class_store.R | 19 - tests/testthat/test-class_target.R | 42 +- tests/testthat/test-tar_backoff.R | 4 tests/testthat/test-tar_branch_index.R | 34 +- tests/testthat/test-tar_branch_names.R | 19 - tests/testthat/test-tar_branches.R | 17 - tests/testthat/test-tar_config_set.R | 8 tests/testthat/test-tar_deduplicate.R | 17 - tests/testthat/test-tar_delete.R | 13 tests/testthat/test-tar_deps.R | 4 tests/testthat/test-tar_destroy.R | 11 tests/testthat/test-tar_envir.R | 40 +- tests/testthat/test-tar_format.R | 5 tests/testthat/test-tar_invalidate.R | 13 tests/testthat/test-tar_load.R | 13 tests/testthat/test-tar_load_globals.R | 23 - tests/testthat/test-tar_make.R | 34 +- tests/testthat/test-tar_make_clustermq.R | 24 - tests/testthat/test-tar_make_future.R | 19 - tests/testthat/test-tar_meta.R | 13 tests/testthat/test-tar_outdated.R | 32 +- tests/testthat/test-tar_path_script_support.R | 8 tests/testthat/test-tar_pid.R | 13 tests/testthat/test-tar_process.R | 13 tests/testthat/test-tar_progress.R | 13 tests/testthat/test-tar_progress_branches.R | 60 ++- tests/testthat/test-tar_progress_summary.R | 13 tests/testthat/test-tar_prune_list.R | 17 - tests/testthat/test-tar_read.R | 13 tests/testthat/test-tar_repository_cas.R | 6 tests/testthat/test-tar_target.R | 2 tests/testthat/test-tar_timestamp.R | 19 - tests/testthat/test-tar_traceback.R | 11 tests/testthat/test-tar_unscript.R | 22 - tests/testthat/test-tar_workspace.R | 11 tests/testthat/test-tar_workspaces.R | 11 tests/testthat/test-utils_callr.R | 6 tests/testthat/test-utils_data.R | 3 tests/testthat/test-utils_functional.R | 4 tests/testthat/test-utils_imports.R | 2 tests/testthat/test-utils_retry.R | 12 199 files changed, 2309 insertions(+), 1735 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre] ,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.13.1 dated 2025-05-08 and 0.13.2 dated 2025-09-13
DESCRIPTION | 8 +- MD5 | 124 ++++++++++++++++----------------- NEWS.md | 6 + R/tar_assign.R | 2 R/tar_combine_raw.R | 2 R/tar_formats.R | 74 ++++++++++--------- R/tar_hook_inner_raw.R | 4 - R/tar_map.R | 10 +- R/tar_map2_raw.R | 6 - R/tar_map_rep_raw.R | 8 +- R/tar_quarto_raw.R | 3 R/tar_quarto_rep_raw.R | 2 R/tar_render_raw.R | 6 + R/tar_render_rep_raw.R | 6 + R/tar_rep2_raw.R | 2 R/tar_rep_index.R | 2 R/tar_select_names.R | 2 R/tar_select_targets.R | 2 R/utils_batch.R | 12 ++- R/utils_knitr.R | 4 - R/utils_targets.R | 2 man/tar_age.Rd | 3 man/tar_change.Rd | 3 man/tar_combine.Rd | 3 man/tar_download.Rd | 3 man/tar_file_read.Rd | 3 man/tar_files.Rd | 3 man/tar_files_input.Rd | 3 man/tar_force.Rd | 3 man/tar_formats.Rd | 3 man/tar_formats_superseded.Rd | 3 man/tar_group_by.Rd | 3 man/tar_group_count.Rd | 3 man/tar_group_select.Rd | 3 man/tar_group_size.Rd | 3 man/tar_knit.Rd | 3 man/tar_map2.Rd | 3 man/tar_map2_count.Rd | 3 man/tar_map2_size.Rd | 3 man/tar_map_rep.Rd | 3 man/tar_quarto.Rd | 18 +++- man/tar_quarto_files.Rd | 8 +- man/tar_quarto_rep.Rd | 11 ++ man/tar_render.Rd | 3 man/tar_render_rep.Rd | 3 man/tar_rep.Rd | 3 man/tar_rep2.Rd | 3 man/tar_rep_map.Rd | 3 man/tar_rep_map_raw.Rd | 3 man/tar_skip.Rd | 3 tests/interactive/test-tar_download.R | 11 +- tests/testthat/helper-utils.R | 3 tests/testthat/test-tar_assign.R | 4 - tests/testthat/test-tar_map.R | 16 ++-- tests/testthat/test-tar_map2.R | 84 +++++++++++++++------- tests/testthat/test-tar_map2_count.R | 56 ++++++++++---- tests/testthat/test-tar_map2_size.R | 56 ++++++++++---- tests/testthat/test-tar_map_rep.R | 108 +++++++++++++++++++--------- tests/testthat/test-tar_quarto.R | 47 ++++++------ tests/testthat/test-tar_render.R | 2 tests/testthat/test-tar_rep2.R | 30 +++++-- tests/testthat/test-tar_rep_map.R | 30 +++++-- tests/testthat/test-utils_functional.R | 4 - 63 files changed, 535 insertions(+), 318 deletions(-)
Title: Color Scheme Helpers
Description: Hexadecimal codes are typically used to represent colors in R.
Connecting these codes to their colors requires practice or memorization.
'palette' provides a 'vctrs' class for working with color palettes, including
printing and plotting functions. The goal of the class is to place visual
representations of color palettes directly on or, at least, next to their
corresponding character representations. Palette extensions also are provided
for data frames using 'pillar'.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between palette versions 0.0.2 dated 2024-03-15 and 0.0.3 dated 2025-09-13
DESCRIPTION | 18 - LICENSE | 4 MD5 | 96 +++--- NAMESPACE | 74 +++-- NEWS.md | 5 R/brightness.R |only R/cast.R | 54 +-- R/coerce.R | 78 ++--- R/data.R | 18 - R/format.R | 295 ++++++++++----------- R/palette-package.R | 30 +- R/palette.R | 103 +++---- R/palette_function.R | 65 ++-- R/plot.R | 175 ++++++------ R/saturation.R |only R/url.R | 150 +++++----- R/utils.R | 123 ++++++-- README.md | 2 inst/CITATION | 26 - inst/WORDLIST | 1 man/brightness.Rd |only man/palette-package.Rd | 50 +-- man/palette-vctrs.Rd | 18 - man/palette.Rd | 62 ++-- man/palette_browse.Rd | 46 +-- man/palette_decode_url.Rd | 44 +-- man/palette_function.Rd | 50 +-- man/plot_palette.Rd | 48 +-- man/roygbiv.Rd | 39 +- man/saturation.Rd |only man/vec_cast.palette.Rd | 48 +-- man/vec_ptype2.palette.Rd | 40 +- tests/spelling.R | 9 tests/testthat.R | 24 - tests/testthat/_snaps/plot/plot-palette-ggplot.svg | 24 + tests/testthat/output-pillar-na.txt | 24 - tests/testthat/output-pillar.txt | 22 - tests/testthat/output-print-empty.txt | 6 tests/testthat/output-print-na.txt | 10 tests/testthat/output-print-named.txt | 16 - tests/testthat/output-print-overflow.txt | 150 +++++----- tests/testthat/output-print.txt | 10 tests/testthat/setup.R | 4 tests/testthat/test-brightness.R |only tests/testthat/test-cast.R | 44 +-- tests/testthat/test-coerce.R | 16 - tests/testthat/test-format.R | 118 ++++---- tests/testthat/test-palette.R | 22 - tests/testthat/test-palette_function.R | 12 tests/testthat/test-plot.R | 43 +-- tests/testthat/test-saturation.R |only tests/testthat/test-url.R | 44 +-- 52 files changed, 1233 insertions(+), 1127 deletions(-)
Title: Flexible Time-to-Event Figures
Description: Ease the creation of time-to-event (i.e. survival) endpoint
figures. The modular functions create figures ready for publication.
Each of the functions that add to or modify the figure are written as
proper 'ggplot2' geoms or stat methods, allowing the functions from
this package to be combined with any function or customization from
'ggplot2' and other 'ggplot2' extension packages.
Author: Daniel D. Sjoberg [aut, cre, cph] ,
Mark Baillie [aut],
Charlotta Fruechtenicht [aut] ,
Steven Haesendonckx [aut] ,
Tim Treis [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between ggsurvfit versions 1.1.0 dated 2024-05-08 and 1.2.0 dated 2025-09-13
DESCRIPTION | 24 MD5 | 172 ++-- NEWS.md | 16 R/add_censor_mark.R | 15 R/add_confidence_interval.R | 2 R/add_legend_title.R | 33 R/add_pvalue.R | 22 R/add_quantile.R | 2 R/add_risktable.R | 2 R/add_risktable_strata_symbol.R | 29 R/ggcuminc.R | 24 R/scale_ggsurvfit.R | 21 R/stat_stepribbon.R | 3 R/survfit2_p.R | 3 R/tidy_survfit.R | 19 R/utils-add_risktable.R | 2 R/utils.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/themes.html | 12 man/add_legend_title.Rd | 2 man/add_risktable_strata_symbol.Rd | 2 man/figures/README-gt-related-pkgs.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/reexports.Rd | 2 man/scale_ggsurvfit.Rd | 13 man/stepribbon.Rd | 60 + tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_censor_mark/cuminc2-censor-mark-all-outcomes.svg | 34 tests/testthat/_snaps/add_confidence_interval/cuminc2-confidence-interval-all-outcomes.svg | 34 tests/testthat/_snaps/add_pvalue.md |only tests/testthat/_snaps/add_pvalue/cuminc2-pvalue.svg | 220 +++-- tests/testthat/_snaps/add_pvalue/sf2-pvalue-annotation-risk.svg | 2 tests/testthat/_snaps/add_quantile/cuminc2-quantile-all-outcomes.svg | 26 tests/testthat/_snaps/add_risktable/add-risktable-overall1.svg | 108 +- tests/testthat/_snaps/add_risktable/add-risktable-overall2.svg | 132 +-- tests/testthat/_snaps/add_risktable/add-risktable-weights.svg | 116 +-- tests/testthat/_snaps/add_risktable/cuminc1-risktable-all-outcomes.svg | 146 ++- tests/testthat/_snaps/add_risktable/cuminc1-risktable.svg | 130 +-- tests/testthat/_snaps/add_risktable/cuminc2-risktable-all-outcomes.svg | 214 +++-- tests/testthat/_snaps/add_risktable/cuminc2-risktable.svg | 196 ++--- tests/testthat/_snaps/add_risktable/cuminc3-risktable-all-outcomes.svg | 368 +++++----- tests/testthat/_snaps/add_risktable/cuminc3-risktable.svg | 342 ++++----- tests/testthat/_snaps/add_risktable/sf-negative-time.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf-start-time.svg | 184 ++--- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label2.svg | 106 +- tests/testthat/_snaps/add_risktable/sf1-risktable-height.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf1-risktable.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label.svg | 174 ++-- tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label2.svg | 140 ++- tests/testthat/_snaps/add_risktable/sf2-risktable-duplicated-axis.svg |only tests/testthat/_snaps/add_risktable/sf2-risktable.svg | 174 ++-- tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label.svg | 330 ++++---- tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label2.svg | 238 +++--- tests/testthat/_snaps/add_risktable/sf3-risktable.svg | 330 ++++---- tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-circle.svg | 68 + tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-default.svg | 68 + tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-uni.svg | 26 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc-all-outcomes.svg | 26 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc-sf-all-outcomes.svg | 26 tests/testthat/_snaps/ggsurvfit/sf1-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom1.svg | 68 + tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom2.svg | 68 + tests/testthat/_snaps/ggsurvfit/sf3-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/vignette-ggsurvfit-kmunicate.svg |only tests/testthat/_snaps/ggsurvfit_options/ggci-outcomes-linetype.svg | 12 tests/testthat/_snaps/ggsurvfit_options/ggci-strata-outcomes.svg | 34 tests/testthat/_snaps/survfit2_p.md |only tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed-symbol.svg | 52 - tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed.svg | 118 +-- tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-default.svg | 116 +-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed-symbol.svg | 72 + tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed.svg | 178 ++-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-default.svg | 174 ++-- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed-symbol.svg | 188 ++--- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed.svg | 334 ++++----- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-default.svg | 330 ++++---- tests/testthat/test-add_censor_mark.R | 33 tests/testthat/test-add_legend_title.R | 99 ++ tests/testthat/test-add_pvalue.R | 40 - tests/testthat/test-add_risktable.R | 30 tests/testthat/test-ggcuminc.R | 33 tests/testthat/test-ggsurvfit.R | 36 tests/testthat/test-survfit2_p.R | 7 tests/testthat/test-tidy_survfit.R | 79 ++ 89 files changed, 3892 insertions(+), 3120 deletions(-)
Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>
Diff between ggside versions 0.3.2 dated 2025-08-24 and 0.4.0 dated 2025-09-13
ggside-0.3.2/ggside/man/is.ggside.Rd |only ggside-0.4.0/ggside/DESCRIPTION | 43 ggside-0.4.0/ggside/MD5 | 314 ggside-0.4.0/ggside/NAMESPACE | 14 ggside-0.4.0/ggside/NEWS.md | 14 ggside-0.4.0/ggside/R/add_gg.R | 154 ggside-0.4.0/ggside/R/all_classes.r |only ggside-0.4.0/ggside/R/constructor-.R | 128 ggside-0.4.0/ggside/R/geom-sidelabel.r | 4 ggside-0.4.0/ggside/R/geom-sideviolin.r | 55 ggside-0.4.0/ggside/R/ggplot_add.R | 124 ggside-0.4.0/ggside/R/ggside-themes.R | 124 ggside-0.4.0/ggside/R/ggside.R | 19 ggside-0.4.0/ggside/R/plot-construction.R | 68 ggside-0.4.0/ggside/R/scales-sides-.R | 211 ggside-0.4.0/ggside/R/side-coord-cartesian.R | 172 ggside-0.4.0/ggside/R/side-facet-grid.R | 304 ggside-0.4.0/ggside/R/side-facet-null.R | 179 ggside-0.4.0/ggside/R/side-facet-wrap.R | 290 ggside-0.4.0/ggside/R/side-facet_.R | 103 ggside-0.4.0/ggside/R/side-layer.R | 196 ggside-0.4.0/ggside/R/side-layout-.r | 5 ggside-0.4.0/ggside/R/update_ggplot.R |only ggside-0.4.0/ggside/R/utils-.R | 71 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Title: Process Analysis for Exponential Random Graph Models
Description: Calculates marginal effects and conducts process analysis in exponential family random graph models (ERGM).
Includes functions to conduct mediation and moderation analyses and to diagnose
multicollinearity.
URL: <https://github.com/sduxbury/ergMargins>.
BugReports: <https://github.com/sduxbury/ergMargins/issues>.
Duxbury, Scott W (2021) <doi:10.1177/0049124120986178>.
Long, J. Scott, and Sarah Mustillo (2018) <doi:10.1177/0049124118799374>.
Mize, Trenton D. (2019) <doi:10.15195/v6.a4>.
Karlson, Kristian Bernt, Anders Holm, and Richard Breen (2012) <doi:10.1177/0081175012444861>.
Duxbury, Scott W (2018) <doi:10.1177/0049124118782543>.
Duxbury, Scott W, Jenna Wertsching (2023) <doi:10.1016/j.socnet.2023.02.003>.
Huang, Peng, Carter Butts (2023) <doi:10.1016/j.socnet.2023.07.001>.
Author: Scott Duxbury [aut, cre, cph]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between ergMargins versions 1.6 dated 2025-06-13 and 1.6.1 dated 2025-09-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/ergm.MSMA.R | 8 ++++---- R/ergmMMA.R | 8 ++++---- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] ,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 1.2.1 dated 2025-06-09 and 1.3.0 dated 2025-09-13
crew-1.2.1/crew/R/crew_async.R |only crew-1.2.1/crew/R/crew_queue.R |only crew-1.2.1/crew/R/utils_promises.R |only crew-1.2.1/crew/man/crew_async.Rd |only crew-1.2.1/crew/man/crew_class_async.Rd |only crew-1.2.1/crew/man/crew_class_queue.Rd |only crew-1.2.1/crew/man/crew_eval_async.Rd |only crew-1.2.1/crew/man/crew_queue.Rd |only crew-1.2.1/crew/tests/interactive/test-promises-groups.R |only crew-1.2.1/crew/tests/interactive/test-promises.R |only crew-1.2.1/crew/tests/testthat/test-crew_async.R |only crew-1.2.1/crew/tests/testthat/test-crew_queue.R |only crew-1.2.1/crew/tests/testthat/test-plugins.R |only crew-1.3.0/crew/DESCRIPTION | 14 crew-1.3.0/crew/LICENSE | 2 crew-1.3.0/crew/MD5 | 163 -- crew-1.3.0/crew/NAMESPACE | 12 crew-1.3.0/crew/NEWS.md | 27 crew-1.3.0/crew/R/class_monad.R | 15 crew-1.3.0/crew/R/crew_clean.R | 27 crew-1.3.0/crew/R/crew_client.R | 332 +--- crew-1.3.0/crew/R/crew_controller.R | 783 ++++------ crew-1.3.0/crew/R/crew_controller_group.R | 464 ++--- crew-1.3.0/crew/R/crew_controller_local.R | 4 crew-1.3.0/crew/R/crew_controller_sequential.R | 82 - crew-1.3.0/crew/R/crew_eval.R | 40 crew-1.3.0/crew/R/crew_launcher.R | 539 +++--- crew-1.3.0/crew/R/crew_launcher_local.R | 21 crew-1.3.0/crew/R/crew_monitor_local.R | 10 crew-1.3.0/crew/R/crew_package.R | 11 crew-1.3.0/crew/R/crew_random_name.R | 2 crew-1.3.0/crew/R/crew_relay.R | 39 crew-1.3.0/crew/R/crew_retry.R | 2 crew-1.3.0/crew/R/crew_throttle.R | 71 crew-1.3.0/crew/R/crew_tls.R | 65 crew-1.3.0/crew/R/crew_worker.R | 13 crew-1.3.0/crew/R/utils_functional.R | 9 crew-1.3.0/crew/R/utils_mirai.R | 115 - crew-1.3.0/crew/R/utils_names.R | 4 crew-1.3.0/crew/R/utils_packages.R | 6 crew-1.3.0/crew/inst/doc/introduction.Rmd | 11 crew-1.3.0/crew/inst/doc/introduction.html | 40 crew-1.3.0/crew/inst/doc/logging.Rmd | 84 - crew-1.3.0/crew/inst/doc/logging.html | 144 - crew-1.3.0/crew/inst/doc/plugins.Rmd | 172 -- crew-1.3.0/crew/inst/doc/plugins.html | 597 +++---- crew-1.3.0/crew/man/crew_class_client.Rd | 46 crew-1.3.0/crew/man/crew_class_controller.Rd | 256 +-- crew-1.3.0/crew/man/crew_class_controller_group.Rd | 206 -- crew-1.3.0/crew/man/crew_class_controller_sequential.Rd | 128 + crew-1.3.0/crew/man/crew_class_launcher.Rd | 183 +- crew-1.3.0/crew/man/crew_class_launcher_local.Rd | 31 crew-1.3.0/crew/man/crew_class_monitor_local.Rd | 5 crew-1.3.0/crew/man/crew_clean.Rd | 10 crew-1.3.0/crew/man/crew_client.Rd | 25 crew-1.3.0/crew/man/crew_controller_group.Rd | 4 crew-1.3.0/crew/man/crew_controller_local.Rd | 14 crew-1.3.0/crew/man/crew_controller_sequential.Rd | 27 crew-1.3.0/crew/man/crew_launcher.Rd | 44 crew-1.3.0/crew/man/crew_launcher_local.Rd | 11 crew-1.3.0/crew/man/crew_random_name.Rd | 2 crew-1.3.0/crew/man/crew_retry.Rd | 2 crew-1.3.0/crew/man/crew_throttle.Rd | 2 crew-1.3.0/crew/man/crew_tls.Rd | 2 crew-1.3.0/crew/man/crew_worker.Rd | 7 crew-1.3.0/crew/tests/interactive/test-autoscale.R |only crew-1.3.0/crew/tests/local/test-cleanup.R | 29 crew-1.3.0/crew/tests/local/test-crew_clean.R | 19 crew-1.3.0/crew/tests/local/test-crew_throttle.R | 2 crew-1.3.0/crew/tests/local/test-failures.R |only crew-1.3.0/crew/tests/local/test-launcher-system2.R | 2 crew-1.3.0/crew/tests/local/test-transient.R | 8 crew-1.3.0/crew/tests/testthat/test-crew_client.R | 69 crew-1.3.0/crew/tests/testthat/test-crew_controller.R | 244 +-- crew-1.3.0/crew/tests/testthat/test-crew_controller_group.R | 209 +- crew-1.3.0/crew/tests/testthat/test-crew_controller_local.R | 68 crew-1.3.0/crew/tests/testthat/test-crew_controller_sequential.R | 7 crew-1.3.0/crew/tests/testthat/test-crew_eval.R | 10 crew-1.3.0/crew/tests/testthat/test-crew_launcher.R | 273 +-- crew-1.3.0/crew/tests/testthat/test-crew_launcher_local.R | 69 crew-1.3.0/crew/tests/testthat/test-crew_monitor_local.R | 58 crew-1.3.0/crew/tests/testthat/test-crew_retry.R | 4 crew-1.3.0/crew/tests/testthat/test-crew_terminate_process.R | 4 crew-1.3.0/crew/tests/testthat/test-crew_throttle.R | 13 crew-1.3.0/crew/tests/testthat/test-crew_worker.R | 52 crew-1.3.0/crew/tests/testthat/test-utils_functional.R | 14 crew-1.3.0/crew/tests/testthat/test-utils_mirai.R | 77 crew-1.3.0/crew/vignettes/introduction.Rmd | 11 crew-1.3.0/crew/vignettes/logging.Rmd | 84 - crew-1.3.0/crew/vignettes/plugins.Rmd | 172 -- 90 files changed, 2745 insertions(+), 3678 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical objects in tidy
tibbles. This makes it easy to report results, create plots and
consistently work with large numbers of models at once. Broom
provides three verbs that each provide different types of information
about a model. tidy() summarizes information about model components
such as coefficients of a regression. glance() reports information
about an entire model, such as goodness of fit measures like AIC and
BIC. augment() adds information about individual observations to a
dataset, such as fitted values or influence measures.
Author: David Robinson [aut],
Alex Hayes [aut] ,
Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Indrajeet Patil [ctb] ,
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
B [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between broom versions 1.0.9 dated 2025-07-28 and 1.0.10 dated 2025-09-13
DESCRIPTION | 12 - MD5 | 384 ++++++++++++++++++++-------------------- NEWS.md | 5 R/broom-package.R | 6 inst/doc/adding-tidiers.html | 4 inst/doc/available-methods.html | 4 inst/doc/bootstrapping.html | 4 inst/doc/broom.html | 4 inst/doc/broom_and_dplyr.html | 4 man/augment.Mclust.Rd | 2 man/augment.betamfx.Rd | 2 man/augment.betareg.Rd | 2 man/augment.clm.Rd | 2 man/augment.coxph.Rd | 2 man/augment.decomposed.ts.Rd | 2 man/augment.drc.Rd | 2 man/augment.felm.Rd | 2 man/augment.fixest.Rd | 2 man/augment.gam.Rd | 2 man/augment.ivreg.Rd | 2 man/augment.kmeans.Rd | 2 man/augment.lm.Rd | 2 man/augment.lmRob.Rd | 2 man/augment.mfx.Rd | 2 man/augment.mjoint.Rd | 2 man/augment.mlogit.Rd | 2 man/augment.nlrq.Rd | 2 man/augment.nls.Rd | 2 man/augment.pam.Rd | 2 man/augment.plm.Rd | 2 man/augment.poLCA.Rd | 2 man/augment.polr.Rd | 2 man/augment.rlm.Rd | 2 man/augment.rma.Rd | 2 man/augment.rq.Rd | 2 man/augment.rqs.Rd | 2 man/augment.sarlm.Rd | 2 man/augment.smooth.spline.Rd | 2 man/augment.speedlm.Rd | 2 man/augment.survreg.Rd | 2 man/broom.Rd | 2 man/data.frame_tidiers.Rd | 2 man/durbinWatsonTest_tidiers.Rd | 2 man/glance.Mclust.Rd | 2 man/glance.aareg.Rd | 2 man/glance.anova.Rd | 2 man/glance.betamfx.Rd | 2 man/glance.betareg.Rd | 2 man/glance.biglm.Rd | 2 man/glance.binDesign.Rd | 2 man/glance.cch.Rd | 2 man/glance.clm.Rd | 2 man/glance.clmm.Rd | 2 man/glance.coeftest.Rd | 2 man/glance.coxph.Rd | 2 man/glance.crr.Rd | 2 man/glance.cv.glmnet.Rd | 2 man/glance.drc.Rd | 2 man/glance.felm.Rd | 2 man/glance.fitdistr.Rd | 2 man/glance.fixest.Rd | 2 man/glance.gam.Rd | 2 man/glance.geeglm.Rd | 2 man/glance.glmRob.Rd | 2 man/glance.glmnet.Rd | 2 man/glance.gmm.Rd | 2 man/glance.ivreg.Rd | 2 man/glance.kmeans.Rd | 2 man/glance.lavaan.Rd | 2 man/glance.lm.Rd | 2 man/glance.lmRob.Rd | 2 man/glance.lmodel2.Rd | 2 man/glance.margins.Rd | 2 man/glance.mfx.Rd | 2 man/glance.mjoint.Rd | 2 man/glance.mlogit.Rd | 2 man/glance.muhaz.Rd | 2 man/glance.multinom.Rd | 2 man/glance.negbin.Rd | 2 man/glance.nlrq.Rd | 2 man/glance.nls.Rd | 2 man/glance.pam.Rd | 2 man/glance.plm.Rd | 2 man/glance.poLCA.Rd | 2 man/glance.polr.Rd | 2 man/glance.pyears.Rd | 2 man/glance.ridgelm.Rd | 2 man/glance.rlm.Rd | 2 man/glance.rma.Rd | 2 man/glance.rq.Rd | 2 man/glance.sarlm.Rd | 2 man/glance.smooth.spline.Rd | 2 man/glance.speedglm.Rd | 2 man/glance.speedlm.Rd | 2 man/glance.summary.lm.Rd | 2 man/glance.survdiff.Rd | 2 man/glance.survexp.Rd | 2 man/glance.survfit.Rd | 2 man/glance.survreg.Rd | 2 man/glance.svyglm.Rd | 2 man/glance.svyolr.Rd | 2 man/glance.varest.Rd | 2 man/leveneTest_tidiers.Rd | 2 man/metafor_tidiers.Rd | 2 man/tidy.Kendall.Rd | 2 man/tidy.Mclust.Rd | 2 man/tidy.aareg.Rd | 2 man/tidy.anova.Rd | 2 man/tidy.betamfx.Rd | 2 man/tidy.betareg.Rd | 2 man/tidy.biglm.Rd | 2 man/tidy.binDesign.Rd | 2 man/tidy.binWidth.Rd | 2 man/tidy.boot.Rd | 2 man/tidy.btergm.Rd | 2 man/tidy.cch.Rd | 2 man/tidy.cld.Rd | 2 man/tidy.clm.Rd | 2 man/tidy.clmm.Rd | 2 man/tidy.coeftest.Rd | 2 man/tidy.confint.glht.Rd | 2 man/tidy.confusionMatrix.Rd | 2 man/tidy.coxph.Rd | 2 man/tidy.crr.Rd | 2 man/tidy.cv.glmnet.Rd | 2 man/tidy.drc.Rd | 2 man/tidy.emmGrid.Rd | 2 man/tidy.epi.2by2.Rd | 2 man/tidy.ergm.Rd | 2 man/tidy.felm.Rd | 2 man/tidy.fitdistr.Rd | 2 man/tidy.fixest.Rd | 2 man/tidy.gam.Rd | 2 man/tidy.garch.Rd | 2 man/tidy.geeglm.Rd | 2 man/tidy.glht.Rd | 2 man/tidy.glmRob.Rd | 2 man/tidy.glmnet.Rd | 2 man/tidy.gmm.Rd | 2 man/tidy.ivreg.Rd | 2 man/tidy.kappa.Rd | 2 man/tidy.kde.Rd | 2 man/tidy.kmeans.Rd | 2 man/tidy.lavaan.Rd | 2 man/tidy.lm.Rd | 2 man/tidy.lm.beta.Rd | 2 man/tidy.lmRob.Rd | 2 man/tidy.lmodel2.Rd | 2 man/tidy.lsmobj.Rd | 2 man/tidy.map.Rd | 2 man/tidy.margins.Rd | 2 man/tidy.mediate.Rd | 2 man/tidy.mfx.Rd | 2 man/tidy.mjoint.Rd | 2 man/tidy.mle2.Rd | 2 man/tidy.mlogit.Rd | 2 man/tidy.muhaz.Rd | 2 man/tidy.multinom.Rd | 2 man/tidy.negbin.Rd | 2 man/tidy.nlrq.Rd | 2 man/tidy.nls.Rd | 2 man/tidy.pairwise.htest.Rd | 2 man/tidy.pam.Rd | 2 man/tidy.plm.Rd | 2 man/tidy.poLCA.Rd | 2 man/tidy.polr.Rd | 2 man/tidy.power.htest.Rd | 2 man/tidy.prcomp.Rd | 2 man/tidy.pyears.Rd | 2 man/tidy.rcorr.Rd | 2 man/tidy.ref.grid.Rd | 2 man/tidy.regsubsets.Rd | 2 man/tidy.ridgelm.Rd | 2 man/tidy.roc.Rd | 2 man/tidy.rq.Rd | 2 man/tidy.rqs.Rd | 2 man/tidy.sarlm.Rd | 2 man/tidy.spec.Rd | 2 man/tidy.speedglm.Rd | 2 man/tidy.speedlm.Rd | 2 man/tidy.summary.glht.Rd | 2 man/tidy.summary_emm.Rd | 2 man/tidy.survdiff.Rd | 2 man/tidy.survexp.Rd | 2 man/tidy.survfit.Rd | 2 man/tidy.survreg.Rd | 2 man/tidy.svyolr.Rd | 2 man/tidy.systemfit.Rd | 2 man/tidy.varest.Rd | 2 man/tidy.zoo.Rd | 2 man/tidy_gam_hastie.Rd | 2 man/tidy_irlba.Rd | 2 man/tidy_svd.Rd | 2 193 files changed, 403 insertions(+), 392 deletions(-)
Title: Identification and Estimation using Group Testing
Description: Methods for the group testing identification problem: 1) Operating
characteristics (e.g., expected number of tests) for commonly used
hierarchical and array-based algorithms, and 2) Optimal testing
configurations for these same algorithms. Methods for the group testing
estimation problem: 1) Estimation and inference procedures for an overall
prevalence, and 2) Regression modeling for commonly used hierarchical and
array-based algorithms.
Author: Brianna Hitt [aut, cre] ,
Christopher Bilder [aut] ,
Frank Schaarschmidt [aut] ,
Brad Biggerstaff [aut] ,
Christopher McMahan [aut] ,
Joshua Tebbs [aut] ,
Boan Zhang [ctb],
Michael Black [ctb],
Peijie Hou [ctb],
Peng Chen [ctb],
Minh Nguyen [ctb]
Maintainer: Brianna Hitt <brianna.hitt@afacademy.af.edu>
Diff between binGroup2 versions 1.3.1 dated 2023-11-13 and 1.3.3 dated 2025-09-13
DESCRIPTION | 34 ++++++++++++--------- MD5 | 21 ++++++------ NEWS.md | 14 ++------ R/AddGenericFunctions.R | 4 +- R/OTC1.R | 2 - R/arrayMasterFunctions.R | 11 +++++- README.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/Identification-through-group-testing.html | 4 +- src/Makevars | 1 src/Makevars.win | 1 12 files changed, 51 insertions(+), 41 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin [aut, cre],
Michael Sandfort [aut],
Shlok Goyal [ctb]
Maintainer: Charles Taragin <ctaragin+antitrustr@gmail.com>
Diff between antitrust versions 0.99.29 dated 2025-09-05 and 0.99.30 dated 2025-09-13
DESCRIPTION | 12 MD5 | 80 NAMESPACE | 206 - R/AIDSFunctions.R | 918 ++-- R/AggregateGamesMethods.R | 440 +- R/AntitrustClasses.R | 234 - R/Auction2ndLogitFunctions.R | 710 +-- R/AuctionClasses.R | 662 +-- R/BargainingLogitFunctions.R | 468 +- R/BertrandClasses.R | 720 +-- R/BertrandRUMClasses.R | 1102 ++--- R/CESFunctions.R | 790 ++-- R/CMCRBertrandFunctions.R | 630 +-- R/CMCRMethods.R | 518 +- R/CVMethods.R | 792 ++-- R/CostMethods.R | 810 ++-- R/CournotFunctions.R | 826 ++-- R/HypoMonMethods.R | 1316 +++--- R/LogitFunctions.R | 1538 +++---- R/MarginsMethods.R | 1536 +++---- R/OutputMethods.R | 1878 ++++----- R/OwnershipMethods.R | 410 +- R/PSMethods.R | 628 +-- R/ParamsMethods.R | 6074 +++++++++++++++---------------- R/PlotMethods.R | 300 - R/PriceDeltaMethods.R | 688 +-- R/PricesMethods.R | 1738 ++++---- R/SimFunctions.R | 1064 ++--- R/SummaryMethods.R | 1302 +++--- R/UPPMethods.R | 250 - R/VerticalClasses.R | 222 - R/VerticalFunctions.R | 740 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Reference.R | 8 inst/doc/Reference.Rmd | 4644 +++++++++++------------ inst/doc/Reference.html | 8413 +++++++++++++++++++++---------------------- man/Bargaining-Classes.Rd | 76 man/MarginsAG-Methods.Rd | 92 vignettes/Reference.Rmd | 4644 +++++++++++------------ vignettes/antitrustbib.bib | 2 41 files changed, 23746 insertions(+), 23735 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book. See Ekstrøm, C. T. (2016). The R Primer. 2nd edition. Chapman & Hall.
Author: Claus Thorn Ekstroem [aut, cre],
Niels Aske Lundtorp Olsen [ctb]
Maintainer: Claus Thorn Ekstroem <claus@rprimer.dk>
Diff between MESS versions 0.5.12 dated 2023-08-20 and 0.6.0 dated 2025-09-13
MESS-0.5.12/MESS/man/MESS.Rd |only MESS-0.5.12/MESS/tests/testthat/testmfastLm.R |only MESS-0.5.12/MESS/tests/testthat/testpairwiseSchur.R |only MESS-0.6.0/MESS/DESCRIPTION | 16 MESS-0.6.0/MESS/MD5 | 107 +-- MESS-0.6.0/MESS/NAMESPACE | 54 + MESS-0.6.0/MESS/R/MESS-package.R | 610 ------------------- MESS-0.6.0/MESS/R/RcppExports.R | 58 + MESS-0.6.0/MESS/R/adaptive.weights.R | 3 MESS-0.6.0/MESS/R/auc.R | 22 MESS-0.6.0/MESS/R/categorize.R | 9 MESS-0.6.0/MESS/R/chisq_test.R | 3 MESS-0.6.0/MESS/R/clipit.R | 1 MESS-0.6.0/MESS/R/data.R |only MESS-0.6.0/MESS/R/drop1.geeglm.R | 4 MESS-0.6.0/MESS/R/feature.test.R | 1 MESS-0.6.0/MESS/R/fitted.geese.R | 2 MESS-0.6.0/MESS/R/geekin.R | 4 MESS-0.6.0/MESS/R/gkgamma.R | 1 MESS-0.6.0/MESS/R/ht.R | 2 MESS-0.6.0/MESS/R/pairwise.cor.test.R | 1 MESS-0.6.0/MESS/R/panel.R | 2 MESS-0.6.0/MESS/R/power.binom.test.R | 1 MESS-0.6.0/MESS/R/power.mcnemar.test.R | 1 MESS-0.6.0/MESS/R/power.t.test.R | 4 MESS-0.6.0/MESS/R/prepost.R | 1 MESS-0.6.0/MESS/R/qic.R | 4 MESS-0.6.0/MESS/R/residualplot.R | 6 MESS-0.6.0/MESS/R/rootonorm.R | 3 MESS-0.6.0/MESS/R/segregate.genes.R | 3 MESS-0.6.0/MESS/R/wallyplot.R | 4 MESS-0.6.0/MESS/man/MESS-package.Rd |only MESS-0.6.0/MESS/man/QIC.Rd | 2 MESS-0.6.0/MESS/man/auc.Rd | 2 MESS-0.6.0/MESS/man/bdstat.Rd | 2 MESS-0.6.0/MESS/man/bees.Rd | 2 MESS-0.6.0/MESS/man/categorize.Rd | 8 MESS-0.6.0/MESS/man/clotting.Rd | 2 MESS-0.6.0/MESS/man/earthquakes.Rd | 2 MESS-0.6.0/MESS/man/greenland.Rd | 2 MESS-0.6.0/MESS/man/happiness.Rd | 2 MESS-0.6.0/MESS/man/icecreamads.Rd | 2 MESS-0.6.0/MESS/man/kwdata.Rd | 2 MESS-0.6.0/MESS/man/lifeexpect.Rd | 2 MESS-0.6.0/MESS/man/matched.Rd | 2 MESS-0.6.0/MESS/man/nh4.Rd | 2 MESS-0.6.0/MESS/man/pairwise_distance_correlation.Rd |only MESS-0.6.0/MESS/man/picea.Rd | 2 MESS-0.6.0/MESS/man/qpcr.Rd | 2 MESS-0.6.0/MESS/man/rainman.Rd | 2 MESS-0.6.0/MESS/man/smokehealth.Rd | 2 MESS-0.6.0/MESS/man/soccer.Rd | 2 MESS-0.6.0/MESS/man/superroot2.Rd | 2 MESS-0.6.0/MESS/src/Makevars | 1 MESS-0.6.0/MESS/src/RcppExports.cpp | 13 MESS-0.6.0/MESS/src/distance_correlation.cpp |only MESS-0.6.0/MESS/src/kstest.cpp | 8 MESS-0.6.0/MESS/tests/testthat/testpowermcnemar.R | 4 58 files changed, 263 insertions(+), 736 deletions(-)