Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre] ,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.11.3 dated 2025-05-08 and 1.11.4 dated 2025-09-13
DESCRIPTION | 10 MD5 | 403 +++++++++++++------------- NEWS.md | 10 R/class_active.R | 6 R/class_auto.R | 3 R/class_aws.R | 14 R/class_aws_file.R | 9 R/class_backoff.R | 2 R/class_branch.R | 6 R/class_build.R | 3 R/class_builder.R | 80 ++++- R/class_cloud.R | 9 R/class_crew.R | 8 R/class_database.R | 30 + R/class_dynamic.R | 4 R/class_external.R | 3 R/class_feather.R | 10 R/class_frames.R | 2 R/class_fst.R | 3 R/class_fst_dt.R | 3 R/class_fst_tbl.R | 3 R/class_future.R | 6 R/class_gcp.R | 12 R/class_gcp_file.R | 9 R/class_glimpse.R | 12 R/class_group.R | 11 R/class_inspection.R | 31 +- R/class_keras.R | 3 R/class_list.R | 3 R/class_local.R | 3 R/class_mermaid.R | 7 R/class_meta.R | 8 R/class_network.R | 28 - R/class_null.R | 3 R/class_parquet.R | 10 R/class_pattern.R | 50 ++- R/class_pipeline.R | 39 +- R/class_prelocal.R | 6 R/class_qs.R | 3 R/class_queue.R | 27 - R/class_rds.R | 3 R/class_reporter.R | 39 -- R/class_resources_aws.R | 21 + R/class_scheduler.R | 2 R/class_settings.R | 2 R/class_stem.R | 39 +- R/class_store.R | 23 - R/class_store_file.R | 34 +- R/class_store_format_custom.R | 3 R/class_store_repository_cas.R | 9 R/class_target.R | 36 -- R/class_torch.R | 3 R/class_url.R | 28 - R/class_value.R | 3 R/class_vector.R | 6 R/class_visnetwork.R | 4 R/class_workspace.R | 2 R/rstudio_addin_tar_read.R | 2 R/tar_bind.R | 4 R/tar_branch_index.R | 2 R/tar_branches.R | 2 R/tar_config_get.R | 4 R/tar_delete.R | 10 R/tar_described_as.R | 2 R/tar_exist_objects.R | 4 R/tar_load.R | 5 R/tar_load_everything.R | 5 R/tar_load_raw.R | 7 R/tar_make.R | 55 ++- R/tar_make_interactive.R | 3 R/tar_manifest.R | 2 R/tar_mermaid.R | 2 R/tar_meta.R | 6 R/tar_objects.R | 4 R/tar_outdated.R | 20 - R/tar_pattern.R | 2 R/tar_process.R | 2 R/tar_progress.R | 2 R/tar_progress_branches.R | 12 R/tar_progress_summary.R | 2 R/tar_read.R | 5 R/tar_read_raw.R | 13 R/tar_renv.R | 23 - R/tar_resources_aws.R | 2 R/tar_sitrep.R | 2 R/tar_target.R | 3 R/tar_unversion.R | 3 R/tar_watch_server.R | 140 ++++----- R/utils_assert.R | 67 ++-- R/utils_aws.R | 57 +-- R/utils_callr.R | 21 - R/utils_cli.R | 12 R/utils_files.R | 13 R/utils_gcp.R | 12 R/utils_imports.R | 2 R/utils_language.R | 3 R/utils_retry.R | 4 R/utils_rstudio.R | 7 inst/WORDLIST | 1 inst/pipelines/use_targets.R | 2 man/tar_load.Rd | 4 man/tar_load_everything.Rd | 2 man/tar_make.Rd | 16 - man/tar_make_clustermq.Rd | 16 - man/tar_make_future.Rd | 16 - man/tar_mermaid.Rd | 17 - man/tar_network.Rd | 17 - man/tar_option_set.Rd | 3 man/tar_outdated.Rd | 17 - man/tar_read.Rd | 4 man/tar_renv.Rd | 23 - man/tar_sitrep.Rd | 17 - man/tar_target.Rd | 3 man/tar_visnetwork.Rd | 17 - tests/aws/test-aws_hpc.R | 47 +-- tests/aws/test-aws_long.R | 9 tests/aws/test-aws_meta.R | 336 +++++++++++---------- tests/aws/test-branching.R | 129 ++++---- tests/aws/test-class_aws_file.R | 64 ++-- tests/aws/test-class_aws_qs.R | 8 tests/gcp/test-class_gcp_file.R | 28 + tests/gcp/test-class_gcp_qs.R | 8 tests/gcp/test-gcp_hpc.R | 47 +-- tests/gcp/test-gcp_long.R | 9 tests/gcp/test-gcp_meta.R | 340 +++++++++++---------- tests/hpc/test-clustermq_local.R | 19 - tests/hpc/test-clustermq_sge.R | 36 +- tests/hpc/test-crew_local.R | 12 tests/hpc/test-crew_sge.R | 8 tests/hpc/test-future_sge.R | 19 - tests/interactive/test-backoff.R | 4 tests/interactive/test-debug.R | 13 tests/interactive/test-mermaid.R | 15 tests/interactive/test-print.R | 12 tests/interactive/test-reporter.R | 22 - tests/interactive/test-tar_poll.R | 15 tests/interactive/test-tar_watch.R | 37 +- tests/interactive/test-visnetwork.R | 15 tests/performance/test-memory.R | 4 tests/performance/test-stems.R | 3 tests/testthat/_targets |only tests/testthat/helper-pipelines.R | 2 tests/testthat/test-class_backoff.R | 4 tests/testthat/test-class_build.R | 4 tests/testthat/test-class_builder.R | 32 +- tests/testthat/test-class_clustermq.R | 58 ++- tests/testthat/test-class_crew.R | 19 - tests/testthat/test-class_database.R | 8 tests/testthat/test-class_future.R | 19 - tests/testthat/test-class_glimpse.R | 15 tests/testthat/test-class_inspection.R | 45 +- tests/testthat/test-class_junction.R | 2 tests/testthat/test-class_meta.R | 12 tests/testthat/test-class_parallel.R | 9 tests/testthat/test-class_pipeline.R | 2 tests/testthat/test-class_reference.R | 3 tests/testthat/test-class_runtime.R | 2 tests/testthat/test-class_stem.R | 14 tests/testthat/test-class_store.R | 19 - tests/testthat/test-class_target.R | 42 +- tests/testthat/test-tar_backoff.R | 4 tests/testthat/test-tar_branch_index.R | 34 +- tests/testthat/test-tar_branch_names.R | 19 - tests/testthat/test-tar_branches.R | 17 - tests/testthat/test-tar_config_set.R | 8 tests/testthat/test-tar_deduplicate.R | 17 - tests/testthat/test-tar_delete.R | 13 tests/testthat/test-tar_deps.R | 4 tests/testthat/test-tar_destroy.R | 11 tests/testthat/test-tar_envir.R | 40 +- tests/testthat/test-tar_format.R | 5 tests/testthat/test-tar_invalidate.R | 13 tests/testthat/test-tar_load.R | 13 tests/testthat/test-tar_load_globals.R | 23 - tests/testthat/test-tar_make.R | 34 +- tests/testthat/test-tar_make_clustermq.R | 24 - tests/testthat/test-tar_make_future.R | 19 - tests/testthat/test-tar_meta.R | 13 tests/testthat/test-tar_outdated.R | 32 +- tests/testthat/test-tar_path_script_support.R | 8 tests/testthat/test-tar_pid.R | 13 tests/testthat/test-tar_process.R | 13 tests/testthat/test-tar_progress.R | 13 tests/testthat/test-tar_progress_branches.R | 60 ++- tests/testthat/test-tar_progress_summary.R | 13 tests/testthat/test-tar_prune_list.R | 17 - tests/testthat/test-tar_read.R | 13 tests/testthat/test-tar_repository_cas.R | 6 tests/testthat/test-tar_target.R | 2 tests/testthat/test-tar_timestamp.R | 19 - tests/testthat/test-tar_traceback.R | 11 tests/testthat/test-tar_unscript.R | 22 - tests/testthat/test-tar_workspace.R | 11 tests/testthat/test-tar_workspaces.R | 11 tests/testthat/test-utils_callr.R | 6 tests/testthat/test-utils_data.R | 3 tests/testthat/test-utils_functional.R | 4 tests/testthat/test-utils_imports.R | 2 tests/testthat/test-utils_retry.R | 12 199 files changed, 2309 insertions(+), 1735 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre] ,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.13.1 dated 2025-05-08 and 0.13.2 dated 2025-09-13
DESCRIPTION | 8 +- MD5 | 124 ++++++++++++++++----------------- NEWS.md | 6 + R/tar_assign.R | 2 R/tar_combine_raw.R | 2 R/tar_formats.R | 74 ++++++++++--------- R/tar_hook_inner_raw.R | 4 - R/tar_map.R | 10 +- R/tar_map2_raw.R | 6 - R/tar_map_rep_raw.R | 8 +- R/tar_quarto_raw.R | 3 R/tar_quarto_rep_raw.R | 2 R/tar_render_raw.R | 6 + R/tar_render_rep_raw.R | 6 + R/tar_rep2_raw.R | 2 R/tar_rep_index.R | 2 R/tar_select_names.R | 2 R/tar_select_targets.R | 2 R/utils_batch.R | 12 ++- R/utils_knitr.R | 4 - R/utils_targets.R | 2 man/tar_age.Rd | 3 man/tar_change.Rd | 3 man/tar_combine.Rd | 3 man/tar_download.Rd | 3 man/tar_file_read.Rd | 3 man/tar_files.Rd | 3 man/tar_files_input.Rd | 3 man/tar_force.Rd | 3 man/tar_formats.Rd | 3 man/tar_formats_superseded.Rd | 3 man/tar_group_by.Rd | 3 man/tar_group_count.Rd | 3 man/tar_group_select.Rd | 3 man/tar_group_size.Rd | 3 man/tar_knit.Rd | 3 man/tar_map2.Rd | 3 man/tar_map2_count.Rd | 3 man/tar_map2_size.Rd | 3 man/tar_map_rep.Rd | 3 man/tar_quarto.Rd | 18 +++- man/tar_quarto_files.Rd | 8 +- man/tar_quarto_rep.Rd | 11 ++ man/tar_render.Rd | 3 man/tar_render_rep.Rd | 3 man/tar_rep.Rd | 3 man/tar_rep2.Rd | 3 man/tar_rep_map.Rd | 3 man/tar_rep_map_raw.Rd | 3 man/tar_skip.Rd | 3 tests/interactive/test-tar_download.R | 11 +- tests/testthat/helper-utils.R | 3 tests/testthat/test-tar_assign.R | 4 - tests/testthat/test-tar_map.R | 16 ++-- tests/testthat/test-tar_map2.R | 84 +++++++++++++++------- tests/testthat/test-tar_map2_count.R | 56 ++++++++++---- tests/testthat/test-tar_map2_size.R | 56 ++++++++++---- tests/testthat/test-tar_map_rep.R | 108 +++++++++++++++++++--------- tests/testthat/test-tar_quarto.R | 47 ++++++------ tests/testthat/test-tar_render.R | 2 tests/testthat/test-tar_rep2.R | 30 +++++-- tests/testthat/test-tar_rep_map.R | 30 +++++-- tests/testthat/test-utils_functional.R | 4 - 63 files changed, 535 insertions(+), 318 deletions(-)
Title: Color Scheme Helpers
Description: Hexadecimal codes are typically used to represent colors in R.
Connecting these codes to their colors requires practice or memorization.
'palette' provides a 'vctrs' class for working with color palettes, including
printing and plotting functions. The goal of the class is to place visual
representations of color palettes directly on or, at least, next to their
corresponding character representations. Palette extensions also are provided
for data frames using 'pillar'.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between palette versions 0.0.2 dated 2024-03-15 and 0.0.3 dated 2025-09-13
DESCRIPTION | 18 - LICENSE | 4 MD5 | 96 +++--- NAMESPACE | 74 +++-- NEWS.md | 5 R/brightness.R |only R/cast.R | 54 +-- R/coerce.R | 78 ++--- R/data.R | 18 - R/format.R | 295 ++++++++++----------- R/palette-package.R | 30 +- R/palette.R | 103 +++---- R/palette_function.R | 65 ++-- R/plot.R | 175 ++++++------ R/saturation.R |only R/url.R | 150 +++++----- R/utils.R | 123 ++++++-- README.md | 2 inst/CITATION | 26 - inst/WORDLIST | 1 man/brightness.Rd |only man/palette-package.Rd | 50 +-- man/palette-vctrs.Rd | 18 - man/palette.Rd | 62 ++-- man/palette_browse.Rd | 46 +-- man/palette_decode_url.Rd | 44 +-- man/palette_function.Rd | 50 +-- man/plot_palette.Rd | 48 +-- man/roygbiv.Rd | 39 +- man/saturation.Rd |only man/vec_cast.palette.Rd | 48 +-- man/vec_ptype2.palette.Rd | 40 +- tests/spelling.R | 9 tests/testthat.R | 24 - tests/testthat/_snaps/plot/plot-palette-ggplot.svg | 24 + tests/testthat/output-pillar-na.txt | 24 - tests/testthat/output-pillar.txt | 22 - tests/testthat/output-print-empty.txt | 6 tests/testthat/output-print-na.txt | 10 tests/testthat/output-print-named.txt | 16 - tests/testthat/output-print-overflow.txt | 150 +++++----- tests/testthat/output-print.txt | 10 tests/testthat/setup.R | 4 tests/testthat/test-brightness.R |only tests/testthat/test-cast.R | 44 +-- tests/testthat/test-coerce.R | 16 - tests/testthat/test-format.R | 118 ++++---- tests/testthat/test-palette.R | 22 - tests/testthat/test-palette_function.R | 12 tests/testthat/test-plot.R | 43 +-- tests/testthat/test-saturation.R |only tests/testthat/test-url.R | 44 +-- 52 files changed, 1233 insertions(+), 1127 deletions(-)
Title: Flexible Time-to-Event Figures
Description: Ease the creation of time-to-event (i.e. survival) endpoint
figures. The modular functions create figures ready for publication.
Each of the functions that add to or modify the figure are written as
proper 'ggplot2' geoms or stat methods, allowing the functions from
this package to be combined with any function or customization from
'ggplot2' and other 'ggplot2' extension packages.
Author: Daniel D. Sjoberg [aut, cre, cph] ,
Mark Baillie [aut],
Charlotta Fruechtenicht [aut] ,
Steven Haesendonckx [aut] ,
Tim Treis [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between ggsurvfit versions 1.1.0 dated 2024-05-08 and 1.2.0 dated 2025-09-13
DESCRIPTION | 24 MD5 | 172 ++-- NEWS.md | 16 R/add_censor_mark.R | 15 R/add_confidence_interval.R | 2 R/add_legend_title.R | 33 R/add_pvalue.R | 22 R/add_quantile.R | 2 R/add_risktable.R | 2 R/add_risktable_strata_symbol.R | 29 R/ggcuminc.R | 24 R/scale_ggsurvfit.R | 21 R/stat_stepribbon.R | 3 R/survfit2_p.R | 3 R/tidy_survfit.R | 19 R/utils-add_risktable.R | 2 R/utils.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/themes.html | 12 man/add_legend_title.Rd | 2 man/add_risktable_strata_symbol.Rd | 2 man/figures/README-gt-related-pkgs.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/reexports.Rd | 2 man/scale_ggsurvfit.Rd | 13 man/stepribbon.Rd | 60 + tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_censor_mark/cuminc2-censor-mark-all-outcomes.svg | 34 tests/testthat/_snaps/add_confidence_interval/cuminc2-confidence-interval-all-outcomes.svg | 34 tests/testthat/_snaps/add_pvalue.md |only tests/testthat/_snaps/add_pvalue/cuminc2-pvalue.svg | 220 +++-- tests/testthat/_snaps/add_pvalue/sf2-pvalue-annotation-risk.svg | 2 tests/testthat/_snaps/add_quantile/cuminc2-quantile-all-outcomes.svg | 26 tests/testthat/_snaps/add_risktable/add-risktable-overall1.svg | 108 +- tests/testthat/_snaps/add_risktable/add-risktable-overall2.svg | 132 +-- tests/testthat/_snaps/add_risktable/add-risktable-weights.svg | 116 +-- tests/testthat/_snaps/add_risktable/cuminc1-risktable-all-outcomes.svg | 146 ++- tests/testthat/_snaps/add_risktable/cuminc1-risktable.svg | 130 +-- tests/testthat/_snaps/add_risktable/cuminc2-risktable-all-outcomes.svg | 214 +++-- tests/testthat/_snaps/add_risktable/cuminc2-risktable.svg | 196 ++--- tests/testthat/_snaps/add_risktable/cuminc3-risktable-all-outcomes.svg | 368 +++++----- tests/testthat/_snaps/add_risktable/cuminc3-risktable.svg | 342 ++++----- tests/testthat/_snaps/add_risktable/sf-negative-time.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf-start-time.svg | 184 ++--- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label2.svg | 106 +- tests/testthat/_snaps/add_risktable/sf1-risktable-height.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf1-risktable.svg | 116 +-- tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label.svg | 174 ++-- tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label2.svg | 140 ++- tests/testthat/_snaps/add_risktable/sf2-risktable-duplicated-axis.svg |only tests/testthat/_snaps/add_risktable/sf2-risktable.svg | 174 ++-- tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label.svg | 330 ++++---- tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label2.svg | 238 +++--- tests/testthat/_snaps/add_risktable/sf3-risktable.svg | 330 ++++---- tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-circle.svg | 68 + tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-default.svg | 68 + tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-uni.svg | 26 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc-all-outcomes.svg | 26 tests/testthat/_snaps/ggcuminc/cuminc2-ggcuminc-sf-all-outcomes.svg | 26 tests/testthat/_snaps/ggsurvfit/sf1-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom1.svg | 68 + tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom2.svg | 68 + tests/testthat/_snaps/ggsurvfit/sf3-ggsurvfit-kmunicate.svg | 1 tests/testthat/_snaps/ggsurvfit/vignette-ggsurvfit-kmunicate.svg |only tests/testthat/_snaps/ggsurvfit_options/ggci-outcomes-linetype.svg | 12 tests/testthat/_snaps/ggsurvfit_options/ggci-strata-outcomes.svg | 34 tests/testthat/_snaps/survfit2_p.md |only tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed-symbol.svg | 52 - tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed.svg | 118 +-- tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-default.svg | 116 +-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed-symbol.svg | 72 + tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed.svg | 178 ++-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-default.svg | 174 ++-- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed-symbol.svg | 188 ++--- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed.svg | 334 ++++----- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-default.svg | 330 ++++---- tests/testthat/test-add_censor_mark.R | 33 tests/testthat/test-add_legend_title.R | 99 ++ tests/testthat/test-add_pvalue.R | 40 - tests/testthat/test-add_risktable.R | 30 tests/testthat/test-ggcuminc.R | 33 tests/testthat/test-ggsurvfit.R | 36 tests/testthat/test-survfit2_p.R | 7 tests/testthat/test-tidy_survfit.R | 79 ++ 89 files changed, 3892 insertions(+), 3120 deletions(-)
Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>
Diff between ggside versions 0.3.2 dated 2025-08-24 and 0.4.0 dated 2025-09-13
ggside-0.3.2/ggside/man/is.ggside.Rd |only ggside-0.4.0/ggside/DESCRIPTION | 43 ggside-0.4.0/ggside/MD5 | 314 ggside-0.4.0/ggside/NAMESPACE | 14 ggside-0.4.0/ggside/NEWS.md | 14 ggside-0.4.0/ggside/R/add_gg.R | 154 ggside-0.4.0/ggside/R/all_classes.r |only ggside-0.4.0/ggside/R/constructor-.R | 128 ggside-0.4.0/ggside/R/geom-sidelabel.r | 4 ggside-0.4.0/ggside/R/geom-sideviolin.r | 55 ggside-0.4.0/ggside/R/ggplot_add.R | 124 ggside-0.4.0/ggside/R/ggside-themes.R | 124 ggside-0.4.0/ggside/R/ggside.R | 19 ggside-0.4.0/ggside/R/plot-construction.R | 68 ggside-0.4.0/ggside/R/scales-sides-.R | 211 ggside-0.4.0/ggside/R/side-coord-cartesian.R | 172 ggside-0.4.0/ggside/R/side-facet-grid.R | 304 ggside-0.4.0/ggside/R/side-facet-null.R | 179 ggside-0.4.0/ggside/R/side-facet-wrap.R | 290 ggside-0.4.0/ggside/R/side-facet_.R | 103 ggside-0.4.0/ggside/R/side-layer.R | 196 ggside-0.4.0/ggside/R/side-layout-.r | 5 ggside-0.4.0/ggside/R/update_ggplot.R |only ggside-0.4.0/ggside/R/utils-.R | 71 ggside-0.4.0/ggside/R/utils-calls.R | 33 ggside-0.4.0/ggside/R/utils-side-coord.R | 129 ggside-0.4.0/ggside/R/z-depricated.R | 28 ggside-0.4.0/ggside/R/zzz.R | 185 ggside-0.4.0/ggside/README.md | 37 ggside-0.4.0/ggside/inst/doc/ggside_aes_mapping.html | 11 ggside-0.4.0/ggside/inst/doc/ggside_basic_usage.html | 22 ggside-0.4.0/ggside/man/as_ggside.Rd | 3 ggside-0.4.0/ggside/man/class_definitions.Rd |only ggside-0.4.0/ggside/man/figures/README-example-1.png |binary ggside-0.4.0/ggside/man/figures/README-example-mix-scales-1.png |binary ggside-0.4.0/ggside/man/figures/README-example-side-themes-1.png |binary ggside-0.4.0/ggside/man/geom_xsideabline.Rd | 21 ggside-0.4.0/ggside/man/geom_xsidebar.Rd | 45 ggside-0.4.0/ggside/man/geom_xsideboxplot.Rd | 64 ggside-0.4.0/ggside/man/geom_xsidedensity.Rd | 42 ggside-0.4.0/ggside/man/geom_xsidefreqpoly.Rd | 19 ggside-0.4.0/ggside/man/geom_xsidefunction.Rd | 24 ggside-0.4.0/ggside/man/geom_xsidehistogram.Rd | 33 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Title: Process Analysis for Exponential Random Graph Models
Description: Calculates marginal effects and conducts process analysis in exponential family random graph models (ERGM).
Includes functions to conduct mediation and moderation analyses and to diagnose
multicollinearity.
URL: <https://github.com/sduxbury/ergMargins>.
BugReports: <https://github.com/sduxbury/ergMargins/issues>.
Duxbury, Scott W (2021) <doi:10.1177/0049124120986178>.
Long, J. Scott, and Sarah Mustillo (2018) <doi:10.1177/0049124118799374>.
Mize, Trenton D. (2019) <doi:10.15195/v6.a4>.
Karlson, Kristian Bernt, Anders Holm, and Richard Breen (2012) <doi:10.1177/0081175012444861>.
Duxbury, Scott W (2018) <doi:10.1177/0049124118782543>.
Duxbury, Scott W, Jenna Wertsching (2023) <doi:10.1016/j.socnet.2023.02.003>.
Huang, Peng, Carter Butts (2023) <doi:10.1016/j.socnet.2023.07.001>.
Author: Scott Duxbury [aut, cre, cph]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between ergMargins versions 1.6 dated 2025-06-13 and 1.6.1 dated 2025-09-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/ergm.MSMA.R | 8 ++++---- R/ergmMMA.R | 8 ++++---- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] ,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 1.2.1 dated 2025-06-09 and 1.3.0 dated 2025-09-13
crew-1.2.1/crew/R/crew_async.R |only crew-1.2.1/crew/R/crew_queue.R |only crew-1.2.1/crew/R/utils_promises.R |only crew-1.2.1/crew/man/crew_async.Rd |only crew-1.2.1/crew/man/crew_class_async.Rd |only crew-1.2.1/crew/man/crew_class_queue.Rd |only crew-1.2.1/crew/man/crew_eval_async.Rd |only crew-1.2.1/crew/man/crew_queue.Rd |only crew-1.2.1/crew/tests/interactive/test-promises-groups.R |only crew-1.2.1/crew/tests/interactive/test-promises.R |only crew-1.2.1/crew/tests/testthat/test-crew_async.R |only crew-1.2.1/crew/tests/testthat/test-crew_queue.R |only crew-1.2.1/crew/tests/testthat/test-plugins.R |only crew-1.3.0/crew/DESCRIPTION | 14 crew-1.3.0/crew/LICENSE | 2 crew-1.3.0/crew/MD5 | 163 -- crew-1.3.0/crew/NAMESPACE | 12 crew-1.3.0/crew/NEWS.md | 27 crew-1.3.0/crew/R/class_monad.R | 15 crew-1.3.0/crew/R/crew_clean.R | 27 crew-1.3.0/crew/R/crew_client.R | 332 +--- crew-1.3.0/crew/R/crew_controller.R | 783 ++++------ crew-1.3.0/crew/R/crew_controller_group.R | 464 ++--- crew-1.3.0/crew/R/crew_controller_local.R | 4 crew-1.3.0/crew/R/crew_controller_sequential.R | 82 - crew-1.3.0/crew/R/crew_eval.R | 40 crew-1.3.0/crew/R/crew_launcher.R | 539 +++--- crew-1.3.0/crew/R/crew_launcher_local.R | 21 crew-1.3.0/crew/R/crew_monitor_local.R | 10 crew-1.3.0/crew/R/crew_package.R | 11 crew-1.3.0/crew/R/crew_random_name.R | 2 crew-1.3.0/crew/R/crew_relay.R | 39 crew-1.3.0/crew/R/crew_retry.R | 2 crew-1.3.0/crew/R/crew_throttle.R | 71 crew-1.3.0/crew/R/crew_tls.R | 65 crew-1.3.0/crew/R/crew_worker.R | 13 crew-1.3.0/crew/R/utils_functional.R | 9 crew-1.3.0/crew/R/utils_mirai.R | 115 - crew-1.3.0/crew/R/utils_names.R | 4 crew-1.3.0/crew/R/utils_packages.R | 6 crew-1.3.0/crew/inst/doc/introduction.Rmd | 11 crew-1.3.0/crew/inst/doc/introduction.html | 40 crew-1.3.0/crew/inst/doc/logging.Rmd | 84 - crew-1.3.0/crew/inst/doc/logging.html | 144 - crew-1.3.0/crew/inst/doc/plugins.Rmd | 172 -- crew-1.3.0/crew/inst/doc/plugins.html | 597 +++---- crew-1.3.0/crew/man/crew_class_client.Rd | 46 crew-1.3.0/crew/man/crew_class_controller.Rd | 256 +-- crew-1.3.0/crew/man/crew_class_controller_group.Rd | 206 -- crew-1.3.0/crew/man/crew_class_controller_sequential.Rd | 128 + crew-1.3.0/crew/man/crew_class_launcher.Rd | 183 +- crew-1.3.0/crew/man/crew_class_launcher_local.Rd | 31 crew-1.3.0/crew/man/crew_class_monitor_local.Rd | 5 crew-1.3.0/crew/man/crew_clean.Rd | 10 crew-1.3.0/crew/man/crew_client.Rd | 25 crew-1.3.0/crew/man/crew_controller_group.Rd | 4 crew-1.3.0/crew/man/crew_controller_local.Rd | 14 crew-1.3.0/crew/man/crew_controller_sequential.Rd | 27 crew-1.3.0/crew/man/crew_launcher.Rd | 44 crew-1.3.0/crew/man/crew_launcher_local.Rd | 11 crew-1.3.0/crew/man/crew_random_name.Rd | 2 crew-1.3.0/crew/man/crew_retry.Rd | 2 crew-1.3.0/crew/man/crew_throttle.Rd | 2 crew-1.3.0/crew/man/crew_tls.Rd | 2 crew-1.3.0/crew/man/crew_worker.Rd | 7 crew-1.3.0/crew/tests/interactive/test-autoscale.R |only crew-1.3.0/crew/tests/local/test-cleanup.R | 29 crew-1.3.0/crew/tests/local/test-crew_clean.R | 19 crew-1.3.0/crew/tests/local/test-crew_throttle.R | 2 crew-1.3.0/crew/tests/local/test-failures.R |only crew-1.3.0/crew/tests/local/test-launcher-system2.R | 2 crew-1.3.0/crew/tests/local/test-transient.R | 8 crew-1.3.0/crew/tests/testthat/test-crew_client.R | 69 crew-1.3.0/crew/tests/testthat/test-crew_controller.R | 244 +-- crew-1.3.0/crew/tests/testthat/test-crew_controller_group.R | 209 +- crew-1.3.0/crew/tests/testthat/test-crew_controller_local.R | 68 crew-1.3.0/crew/tests/testthat/test-crew_controller_sequential.R | 7 crew-1.3.0/crew/tests/testthat/test-crew_eval.R | 10 crew-1.3.0/crew/tests/testthat/test-crew_launcher.R | 273 +-- crew-1.3.0/crew/tests/testthat/test-crew_launcher_local.R | 69 crew-1.3.0/crew/tests/testthat/test-crew_monitor_local.R | 58 crew-1.3.0/crew/tests/testthat/test-crew_retry.R | 4 crew-1.3.0/crew/tests/testthat/test-crew_terminate_process.R | 4 crew-1.3.0/crew/tests/testthat/test-crew_throttle.R | 13 crew-1.3.0/crew/tests/testthat/test-crew_worker.R | 52 crew-1.3.0/crew/tests/testthat/test-utils_functional.R | 14 crew-1.3.0/crew/tests/testthat/test-utils_mirai.R | 77 crew-1.3.0/crew/vignettes/introduction.Rmd | 11 crew-1.3.0/crew/vignettes/logging.Rmd | 84 - crew-1.3.0/crew/vignettes/plugins.Rmd | 172 -- 90 files changed, 2745 insertions(+), 3678 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical objects in tidy
tibbles. This makes it easy to report results, create plots and
consistently work with large numbers of models at once. Broom
provides three verbs that each provide different types of information
about a model. tidy() summarizes information about model components
such as coefficients of a regression. glance() reports information
about an entire model, such as goodness of fit measures like AIC and
BIC. augment() adds information about individual observations to a
dataset, such as fitted values or influence measures.
Author: David Robinson [aut],
Alex Hayes [aut] ,
Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Indrajeet Patil [ctb] ,
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
B [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between broom versions 1.0.9 dated 2025-07-28 and 1.0.10 dated 2025-09-13
DESCRIPTION | 12 - MD5 | 384 ++++++++++++++++++++-------------------- NEWS.md | 5 R/broom-package.R | 6 inst/doc/adding-tidiers.html | 4 inst/doc/available-methods.html | 4 inst/doc/bootstrapping.html | 4 inst/doc/broom.html | 4 inst/doc/broom_and_dplyr.html | 4 man/augment.Mclust.Rd | 2 man/augment.betamfx.Rd | 2 man/augment.betareg.Rd | 2 man/augment.clm.Rd | 2 man/augment.coxph.Rd | 2 man/augment.decomposed.ts.Rd | 2 man/augment.drc.Rd | 2 man/augment.felm.Rd | 2 man/augment.fixest.Rd | 2 man/augment.gam.Rd | 2 man/augment.ivreg.Rd | 2 man/augment.kmeans.Rd | 2 man/augment.lm.Rd | 2 man/augment.lmRob.Rd | 2 man/augment.mfx.Rd | 2 man/augment.mjoint.Rd | 2 man/augment.mlogit.Rd | 2 man/augment.nlrq.Rd | 2 man/augment.nls.Rd | 2 man/augment.pam.Rd | 2 man/augment.plm.Rd | 2 man/augment.poLCA.Rd | 2 man/augment.polr.Rd | 2 man/augment.rlm.Rd | 2 man/augment.rma.Rd | 2 man/augment.rq.Rd | 2 man/augment.rqs.Rd | 2 man/augment.sarlm.Rd | 2 man/augment.smooth.spline.Rd | 2 man/augment.speedlm.Rd | 2 man/augment.survreg.Rd | 2 man/broom.Rd | 2 man/data.frame_tidiers.Rd | 2 man/durbinWatsonTest_tidiers.Rd | 2 man/glance.Mclust.Rd | 2 man/glance.aareg.Rd | 2 man/glance.anova.Rd | 2 man/glance.betamfx.Rd | 2 man/glance.betareg.Rd | 2 man/glance.biglm.Rd | 2 man/glance.binDesign.Rd | 2 man/glance.cch.Rd | 2 man/glance.clm.Rd | 2 man/glance.clmm.Rd | 2 man/glance.coeftest.Rd | 2 man/glance.coxph.Rd | 2 man/glance.crr.Rd | 2 man/glance.cv.glmnet.Rd | 2 man/glance.drc.Rd | 2 man/glance.felm.Rd | 2 man/glance.fitdistr.Rd | 2 man/glance.fixest.Rd | 2 man/glance.gam.Rd | 2 man/glance.geeglm.Rd | 2 man/glance.glmRob.Rd | 2 man/glance.glmnet.Rd | 2 man/glance.gmm.Rd | 2 man/glance.ivreg.Rd | 2 man/glance.kmeans.Rd | 2 man/glance.lavaan.Rd | 2 man/glance.lm.Rd | 2 man/glance.lmRob.Rd | 2 man/glance.lmodel2.Rd | 2 man/glance.margins.Rd | 2 man/glance.mfx.Rd | 2 man/glance.mjoint.Rd | 2 man/glance.mlogit.Rd | 2 man/glance.muhaz.Rd | 2 man/glance.multinom.Rd | 2 man/glance.negbin.Rd | 2 man/glance.nlrq.Rd | 2 man/glance.nls.Rd | 2 man/glance.pam.Rd | 2 man/glance.plm.Rd | 2 man/glance.poLCA.Rd | 2 man/glance.polr.Rd | 2 man/glance.pyears.Rd | 2 man/glance.ridgelm.Rd | 2 man/glance.rlm.Rd | 2 man/glance.rma.Rd | 2 man/glance.rq.Rd | 2 man/glance.sarlm.Rd | 2 man/glance.smooth.spline.Rd | 2 man/glance.speedglm.Rd | 2 man/glance.speedlm.Rd | 2 man/glance.summary.lm.Rd | 2 man/glance.survdiff.Rd | 2 man/glance.survexp.Rd | 2 man/glance.survfit.Rd | 2 man/glance.survreg.Rd | 2 man/glance.svyglm.Rd | 2 man/glance.svyolr.Rd | 2 man/glance.varest.Rd | 2 man/leveneTest_tidiers.Rd | 2 man/metafor_tidiers.Rd | 2 man/tidy.Kendall.Rd | 2 man/tidy.Mclust.Rd | 2 man/tidy.aareg.Rd | 2 man/tidy.anova.Rd | 2 man/tidy.betamfx.Rd | 2 man/tidy.betareg.Rd | 2 man/tidy.biglm.Rd | 2 man/tidy.binDesign.Rd | 2 man/tidy.binWidth.Rd | 2 man/tidy.boot.Rd | 2 man/tidy.btergm.Rd | 2 man/tidy.cch.Rd | 2 man/tidy.cld.Rd | 2 man/tidy.clm.Rd | 2 man/tidy.clmm.Rd | 2 man/tidy.coeftest.Rd | 2 man/tidy.confint.glht.Rd | 2 man/tidy.confusionMatrix.Rd | 2 man/tidy.coxph.Rd | 2 man/tidy.crr.Rd | 2 man/tidy.cv.glmnet.Rd | 2 man/tidy.drc.Rd | 2 man/tidy.emmGrid.Rd | 2 man/tidy.epi.2by2.Rd | 2 man/tidy.ergm.Rd | 2 man/tidy.felm.Rd | 2 man/tidy.fitdistr.Rd | 2 man/tidy.fixest.Rd | 2 man/tidy.gam.Rd | 2 man/tidy.garch.Rd | 2 man/tidy.geeglm.Rd | 2 man/tidy.glht.Rd | 2 man/tidy.glmRob.Rd | 2 man/tidy.glmnet.Rd | 2 man/tidy.gmm.Rd | 2 man/tidy.ivreg.Rd | 2 man/tidy.kappa.Rd | 2 man/tidy.kde.Rd | 2 man/tidy.kmeans.Rd | 2 man/tidy.lavaan.Rd | 2 man/tidy.lm.Rd | 2 man/tidy.lm.beta.Rd | 2 man/tidy.lmRob.Rd | 2 man/tidy.lmodel2.Rd | 2 man/tidy.lsmobj.Rd | 2 man/tidy.map.Rd | 2 man/tidy.margins.Rd | 2 man/tidy.mediate.Rd | 2 man/tidy.mfx.Rd | 2 man/tidy.mjoint.Rd | 2 man/tidy.mle2.Rd | 2 man/tidy.mlogit.Rd | 2 man/tidy.muhaz.Rd | 2 man/tidy.multinom.Rd | 2 man/tidy.negbin.Rd | 2 man/tidy.nlrq.Rd | 2 man/tidy.nls.Rd | 2 man/tidy.pairwise.htest.Rd | 2 man/tidy.pam.Rd | 2 man/tidy.plm.Rd | 2 man/tidy.poLCA.Rd | 2 man/tidy.polr.Rd | 2 man/tidy.power.htest.Rd | 2 man/tidy.prcomp.Rd | 2 man/tidy.pyears.Rd | 2 man/tidy.rcorr.Rd | 2 man/tidy.ref.grid.Rd | 2 man/tidy.regsubsets.Rd | 2 man/tidy.ridgelm.Rd | 2 man/tidy.roc.Rd | 2 man/tidy.rq.Rd | 2 man/tidy.rqs.Rd | 2 man/tidy.sarlm.Rd | 2 man/tidy.spec.Rd | 2 man/tidy.speedglm.Rd | 2 man/tidy.speedlm.Rd | 2 man/tidy.summary.glht.Rd | 2 man/tidy.summary_emm.Rd | 2 man/tidy.survdiff.Rd | 2 man/tidy.survexp.Rd | 2 man/tidy.survfit.Rd | 2 man/tidy.survreg.Rd | 2 man/tidy.svyolr.Rd | 2 man/tidy.systemfit.Rd | 2 man/tidy.varest.Rd | 2 man/tidy.zoo.Rd | 2 man/tidy_gam_hastie.Rd | 2 man/tidy_irlba.Rd | 2 man/tidy_svd.Rd | 2 193 files changed, 403 insertions(+), 392 deletions(-)
Title: Identification and Estimation using Group Testing
Description: Methods for the group testing identification problem: 1) Operating
characteristics (e.g., expected number of tests) for commonly used
hierarchical and array-based algorithms, and 2) Optimal testing
configurations for these same algorithms. Methods for the group testing
estimation problem: 1) Estimation and inference procedures for an overall
prevalence, and 2) Regression modeling for commonly used hierarchical and
array-based algorithms.
Author: Brianna Hitt [aut, cre] ,
Christopher Bilder [aut] ,
Frank Schaarschmidt [aut] ,
Brad Biggerstaff [aut] ,
Christopher McMahan [aut] ,
Joshua Tebbs [aut] ,
Boan Zhang [ctb],
Michael Black [ctb],
Peijie Hou [ctb],
Peng Chen [ctb],
Minh Nguyen [ctb]
Maintainer: Brianna Hitt <brianna.hitt@afacademy.af.edu>
Diff between binGroup2 versions 1.3.1 dated 2023-11-13 and 1.3.3 dated 2025-09-13
DESCRIPTION | 34 ++++++++++++--------- MD5 | 21 ++++++------ NEWS.md | 14 ++------ R/AddGenericFunctions.R | 4 +- R/OTC1.R | 2 - R/arrayMasterFunctions.R | 11 +++++- README.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/Identification-through-group-testing.html | 4 +- src/Makevars | 1 src/Makevars.win | 1 12 files changed, 51 insertions(+), 41 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin [aut, cre],
Michael Sandfort [aut],
Shlok Goyal [ctb]
Maintainer: Charles Taragin <ctaragin+antitrustr@gmail.com>
Diff between antitrust versions 0.99.29 dated 2025-09-05 and 0.99.30 dated 2025-09-13
DESCRIPTION | 12 MD5 | 80 NAMESPACE | 206 - R/AIDSFunctions.R | 918 ++-- R/AggregateGamesMethods.R | 440 +- R/AntitrustClasses.R | 234 - R/Auction2ndLogitFunctions.R | 710 +-- R/AuctionClasses.R | 662 +-- R/BargainingLogitFunctions.R | 468 +- R/BertrandClasses.R | 720 +-- R/BertrandRUMClasses.R | 1102 ++--- R/CESFunctions.R | 790 ++-- R/CMCRBertrandFunctions.R | 630 +-- R/CMCRMethods.R | 518 +- R/CVMethods.R | 792 ++-- R/CostMethods.R | 810 ++-- R/CournotFunctions.R | 826 ++-- R/HypoMonMethods.R | 1316 +++--- R/LogitFunctions.R | 1538 +++---- R/MarginsMethods.R | 1536 +++---- R/OutputMethods.R | 1878 ++++----- R/OwnershipMethods.R | 410 +- R/PSMethods.R | 628 +-- R/ParamsMethods.R | 6074 +++++++++++++++---------------- R/PlotMethods.R | 300 - R/PriceDeltaMethods.R | 688 +-- R/PricesMethods.R | 1738 ++++---- R/SimFunctions.R | 1064 ++--- R/SummaryMethods.R | 1302 +++--- R/UPPMethods.R | 250 - R/VerticalClasses.R | 222 - R/VerticalFunctions.R | 740 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Reference.R | 8 inst/doc/Reference.Rmd | 4644 +++++++++++------------ inst/doc/Reference.html | 8413 +++++++++++++++++++++---------------------- man/Bargaining-Classes.Rd | 76 man/MarginsAG-Methods.Rd | 92 vignettes/Reference.Rmd | 4644 +++++++++++------------ vignettes/antitrustbib.bib | 2 41 files changed, 23746 insertions(+), 23735 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book. See Ekstrøm, C. T. (2016). The R Primer. 2nd edition. Chapman & Hall.
Author: Claus Thorn Ekstroem [aut, cre],
Niels Aske Lundtorp Olsen [ctb]
Maintainer: Claus Thorn Ekstroem <claus@rprimer.dk>
Diff between MESS versions 0.5.12 dated 2023-08-20 and 0.6.0 dated 2025-09-13
MESS-0.5.12/MESS/man/MESS.Rd |only MESS-0.5.12/MESS/tests/testthat/testmfastLm.R |only MESS-0.5.12/MESS/tests/testthat/testpairwiseSchur.R |only MESS-0.6.0/MESS/DESCRIPTION | 16 MESS-0.6.0/MESS/MD5 | 107 +-- MESS-0.6.0/MESS/NAMESPACE | 54 + MESS-0.6.0/MESS/R/MESS-package.R | 610 ------------------- MESS-0.6.0/MESS/R/RcppExports.R | 58 + MESS-0.6.0/MESS/R/adaptive.weights.R | 3 MESS-0.6.0/MESS/R/auc.R | 22 MESS-0.6.0/MESS/R/categorize.R | 9 MESS-0.6.0/MESS/R/chisq_test.R | 3 MESS-0.6.0/MESS/R/clipit.R | 1 MESS-0.6.0/MESS/R/data.R |only MESS-0.6.0/MESS/R/drop1.geeglm.R | 4 MESS-0.6.0/MESS/R/feature.test.R | 1 MESS-0.6.0/MESS/R/fitted.geese.R | 2 MESS-0.6.0/MESS/R/geekin.R | 4 MESS-0.6.0/MESS/R/gkgamma.R | 1 MESS-0.6.0/MESS/R/ht.R | 2 MESS-0.6.0/MESS/R/pairwise.cor.test.R | 1 MESS-0.6.0/MESS/R/panel.R | 2 MESS-0.6.0/MESS/R/power.binom.test.R | 1 MESS-0.6.0/MESS/R/power.mcnemar.test.R | 1 MESS-0.6.0/MESS/R/power.t.test.R | 4 MESS-0.6.0/MESS/R/prepost.R | 1 MESS-0.6.0/MESS/R/qic.R | 4 MESS-0.6.0/MESS/R/residualplot.R | 6 MESS-0.6.0/MESS/R/rootonorm.R | 3 MESS-0.6.0/MESS/R/segregate.genes.R | 3 MESS-0.6.0/MESS/R/wallyplot.R | 4 MESS-0.6.0/MESS/man/MESS-package.Rd |only MESS-0.6.0/MESS/man/QIC.Rd | 2 MESS-0.6.0/MESS/man/auc.Rd | 2 MESS-0.6.0/MESS/man/bdstat.Rd | 2 MESS-0.6.0/MESS/man/bees.Rd | 2 MESS-0.6.0/MESS/man/categorize.Rd | 8 MESS-0.6.0/MESS/man/clotting.Rd | 2 MESS-0.6.0/MESS/man/earthquakes.Rd | 2 MESS-0.6.0/MESS/man/greenland.Rd | 2 MESS-0.6.0/MESS/man/happiness.Rd | 2 MESS-0.6.0/MESS/man/icecreamads.Rd | 2 MESS-0.6.0/MESS/man/kwdata.Rd | 2 MESS-0.6.0/MESS/man/lifeexpect.Rd | 2 MESS-0.6.0/MESS/man/matched.Rd | 2 MESS-0.6.0/MESS/man/nh4.Rd | 2 MESS-0.6.0/MESS/man/pairwise_distance_correlation.Rd |only MESS-0.6.0/MESS/man/picea.Rd | 2 MESS-0.6.0/MESS/man/qpcr.Rd | 2 MESS-0.6.0/MESS/man/rainman.Rd | 2 MESS-0.6.0/MESS/man/smokehealth.Rd | 2 MESS-0.6.0/MESS/man/soccer.Rd | 2 MESS-0.6.0/MESS/man/superroot2.Rd | 2 MESS-0.6.0/MESS/src/Makevars | 1 MESS-0.6.0/MESS/src/RcppExports.cpp | 13 MESS-0.6.0/MESS/src/distance_correlation.cpp |only MESS-0.6.0/MESS/src/kstest.cpp | 8 MESS-0.6.0/MESS/tests/testthat/testpowermcnemar.R | 4 58 files changed, 263 insertions(+), 736 deletions(-)