Mon, 15 Sep 2025

Package juicedown updated to version 0.1.2 with previous version 0.1.1 dated 2023-09-05

Title: 'juice' + 'markdown': Convert 'R Markdown' into 'HTML' with Inline Styles
Description: A convenience tool to create 'HTML' with inline styles using 'juicyjuice' and 'markdown' packages. It is particularly useful when working on a content management system (CMS) whose code editor eliminates style and link tags. The main use case of the package is the learning management system, 'Moodle'. Additional helper functions for teaching purposes are provided. Learn more about 'juicedown' at <https://kenjisato.github.io/juicedown/>.
Author: Kenji Sato [aut, cre, cph]
Maintainer: Kenji Sato <kenji@kenjisato.jp>

Diff between juicedown versions 0.1.1 dated 2023-09-05 and 0.1.2 dated 2025-09-15

 DESCRIPTION              |   15 +++++++++------
 MD5                      |   14 +++++++-------
 NEWS.md                  |    7 ++++++-
 R/includeFlickr.R        |    2 +-
 R/includeMedia.R         |    4 ++--
 man/includeAudio.Rd      |    2 +-
 man/includeText.Rd       |    2 +-
 man/juicedown-package.Rd |    2 ++
 8 files changed, 29 insertions(+), 19 deletions(-)

More information about juicedown at CRAN
Permanent link

Package dsem updated to version 1.7.0 with previous version 1.6.0 dated 2025-03-21

Title: Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data with generic and simplified specification for simultaneous and lagged effects. Methods are described in Thorson et al. (2024) "Dynamic structural equation models synthesize ecosystem dynamics constrained by ecological mechanisms."
Author: James Thorson [aut, cre] , Maurice Goodman [ctb] , Wouter van der Bijl [ctb] , Giovanni M. Marchetti [ctr]
Maintainer: James Thorson <James.Thorson@noaa.gov>

Diff between dsem versions 1.6.0 dated 2025-03-21 and 1.7.0 dated 2025-09-15

 dsem-1.6.0/dsem/inst/doc/vignette.R                   |only
 dsem-1.6.0/dsem/inst/doc/vignette.Rmd                 |only
 dsem-1.6.0/dsem/inst/doc/vignette.html                |only
 dsem-1.6.0/dsem/vignettes/vignette.Rmd                |only
 dsem-1.7.0/dsem/DESCRIPTION                           |   20 +-
 dsem-1.7.0/dsem/MD5                                   |   72 ++++---
 dsem-1.7.0/dsem/NAMESPACE                             |    2 
 dsem-1.7.0/dsem/NEWS.md                               |   12 +
 dsem-1.7.0/dsem/R/compute_nll.R                       |    6 
 dsem-1.7.0/dsem/R/dsem.R                              |   59 +++++-
 dsem-1.7.0/dsem/R/make_dsem_ram.R                     |   14 -
 dsem-1.7.0/dsem/R/make_matrices.R                     |   17 +
 dsem-1.7.0/dsem/R/stepwise_selection.R                |   17 +
 dsem-1.7.0/dsem/R/utility.R                           |  174 ++++++++++++++++--
 dsem-1.7.0/dsem/README.md                             |    6 
 dsem-1.7.0/dsem/build/partial.rdb                     |binary
 dsem-1.7.0/dsem/build/vignette.rds                    |binary
 dsem-1.7.0/dsem/inst/doc/dynamic_factor_analysis.html |   34 +--
 dsem-1.7.0/dsem/inst/doc/features.R                   |only
 dsem-1.7.0/dsem/inst/doc/features.Rmd                 |only
 dsem-1.7.0/dsem/inst/doc/features.html                |only
 dsem-1.7.0/dsem/inst/doc/model-description.R          |only
 dsem-1.7.0/dsem/inst/doc/model-description.Rmd        |only
 dsem-1.7.0/dsem/inst/doc/model-description.html       |only
 dsem-1.7.0/dsem/inst/doc/spatial_diffusion.html       |    3 
 dsem-1.7.0/dsem/man/cAIC.Rd                           |    4 
 dsem-1.7.0/dsem/man/classify_variables.Rd             |    2 
 dsem-1.7.0/dsem/man/convert_equations.Rd              |    4 
 dsem-1.7.0/dsem/man/dsem.Rd                           |   92 +++++----
 dsem-1.7.0/dsem/man/dsemRTMB.Rd                       |   16 -
 dsem-1.7.0/dsem/man/dsem_control.Rd                   |   31 +--
 dsem-1.7.0/dsem/man/figures                           |only
 dsem-1.7.0/dsem/man/logLik.dsem.Rd                    |    4 
 dsem-1.7.0/dsem/man/loo_residuals.Rd                  |    2 
 dsem-1.7.0/dsem/man/make_dsem_ram.Rd                  |   76 ++++---
 dsem-1.7.0/dsem/man/make_matrices.Rd                  |    4 
 dsem-1.7.0/dsem/man/parse_path.Rd                     |    2 
 dsem-1.7.0/dsem/man/partition_variance.Rd             |only
 dsem-1.7.0/dsem/man/stepwise_selection.Rd             |    9 
 dsem-1.7.0/dsem/man/test_dsep.Rd                      |    2 
 dsem-1.7.0/dsem/man/total_effect.Rd                   |   59 ++++--
 dsem-1.7.0/dsem/src/dsem.cpp                          |  103 ++++++++++
 dsem-1.7.0/dsem/vignettes/features.Rmd                |only
 dsem-1.7.0/dsem/vignettes/model-description.Rmd       |only
 44 files changed, 622 insertions(+), 224 deletions(-)

More information about dsem at CRAN
Permanent link

Package alookr updated to version 0.4.0 with previous version 0.3.91 dated 2025-08-24

Title: Model Classifier for Binary Classification
Description: A collection of tools that support data splitting, predictive modeling, and model evaluation. A typical function is to split a dataset into a training dataset and a test dataset. Then compare the data distribution of the two datasets. Another feature is to support the development of predictive models and to compare the performance of several predictive models, helping to select the best model.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>

Diff between alookr versions 0.3.91 dated 2025-08-24 and 0.4.0 dated 2025-09-15

 alookr |only
 1 file changed

More information about alookr at CRAN
Permanent link

Package fastei updated to version 0.0.0.10 with previous version 0.0.0.9 dated 2025-07-18

Title: Methods for ''A Fast Alternative for the R x C Ecological Inference Case''
Description: Estimates the probability matrix for the R×C Ecological Inference problem using the Expectation-Maximization Algorithm with four approximation methods for the E-Step, and an exact method as well. It also provides a bootstrap function to estimate the standard deviation of the estimated probabilities. In addition, it has functions that aggregate rows optimally to have more reliable estimates in cases of having few data points. For comparing the probability estimates of two groups, a Wald test routine is implemented. The library has data from the first round of the Chilean Presidential Election 2021 and can also generate synthetic election data. Methods described in Thraves, Charles; Ubilla, Pablo; Hermosilla, Daniel (2024) ''A Fast Ecological Inference Algorithm for the R×C case'' <doi:10.2139/ssrn.4832834>.
Author: Charles Thraves [aut] , Pablo Ubilla [aut], Daniel Hermosilla [aut, cre], Hanson Troy [ctb, cph]
Maintainer: Daniel Hermosilla <daniel.hermosilla.r@ug.uchile.cl>

Diff between fastei versions 0.0.0.9 dated 2025-07-18 and 0.0.0.10 dated 2025-09-15

 fastei-0.0.0.10/fastei/DESCRIPTION                 |   12 
 fastei-0.0.0.10/fastei/MD5                         |   80 +-
 fastei-0.0.0.10/fastei/NAMESPACE                   |    2 
 fastei-0.0.0.10/fastei/R/RcppExports.R             |   20 
 fastei-0.0.0.10/fastei/R/data-utils.R              |    2 
 fastei-0.0.0.10/fastei/R/eim-class.R               |  118 +++-
 fastei-0.0.0.10/fastei/R/instancer.R               |   19 
 fastei-0.0.0.10/fastei/R/internal.R                |   30 -
 fastei-0.0.0.10/fastei/inst/doc/demonstration.html |   17 
 fastei-0.0.0.10/fastei/man/fastei-package.Rd       |    2 
 fastei-0.0.0.10/fastei/man/get_eim_chile.Rd        |    2 
 fastei-0.0.0.10/fastei/man/run_em.Rd               |   19 
 fastei-0.0.0.10/fastei/man/simulate_election.Rd    |    1 
 fastei-0.0.0.10/fastei/src/LP.c                    |only
 fastei-0.0.0.10/fastei/src/LP.h                    |only
 fastei-0.0.0.10/fastei/src/MCMC.c                  |only
 fastei-0.0.0.10/fastei/src/MCMC.h                  |only
 fastei-0.0.0.10/fastei/src/Makevars                |    3 
 fastei-0.0.0.10/fastei/src/RcppExports.cpp         |   62 +-
 fastei-0.0.0.10/fastei/src/bootstrap.c             |   45 -
 fastei-0.0.0.10/fastei/src/bootstrap.h             |    2 
 fastei-0.0.0.10/fastei/src/dynamic_program.c       |   76 +-
 fastei-0.0.0.10/fastei/src/dynamic_program.h       |   22 
 fastei-0.0.0.10/fastei/src/exact.c                 |  209 ++-----
 fastei-0.0.0.10/fastei/src/exact.h                 |   23 
 fastei-0.0.0.10/fastei/src/globals.h               |   92 ++-
 fastei-0.0.0.10/fastei/src/main.c                  |  601 ++++++++++++++-------
 fastei-0.0.0.10/fastei/src/main.h                  |   89 ---
 fastei-0.0.0.10/fastei/src/multinomial.c           |   54 -
 fastei-0.0.0.10/fastei/src/multinomial.h           |    4 
 fastei-0.0.0.10/fastei/src/multivariate-cdf.c      |  431 ++++++++++-----
 fastei-0.0.0.10/fastei/src/multivariate-cdf.h      |    2 
 fastei-0.0.0.10/fastei/src/multivariate-pdf.c      |  254 ++++----
 fastei-0.0.0.10/fastei/src/multivariate-pdf.h      |    2 
 fastei-0.0.0.10/fastei/src/utils_hash.c            |    2 
 fastei-0.0.0.10/fastei/src/utils_hash.h            |    6 
 fastei-0.0.0.10/fastei/src/utils_matrix.c          |  118 +++-
 fastei-0.0.0.10/fastei/src/utils_matrix.h          |   21 
 fastei-0.0.0.10/fastei/src/utils_multivariate.c    |    9 
 fastei-0.0.0.10/fastei/src/utils_multivariate.h    |    4 
 fastei-0.0.0.10/fastei/src/wrapper.cpp             |  149 ++---
 fastei-0.0.0.10/fastei/src/wrapper.h               |   71 +-
 fastei-0.0.0.9/fastei/src/hitAndRun.c              |only
 fastei-0.0.0.9/fastei/src/hitAndRun.h              |only
 44 files changed, 1612 insertions(+), 1063 deletions(-)

More information about fastei at CRAN
Permanent link

Package coveffectsplot updated to version 1.0.7 with previous version 1.0.6 dated 2025-01-12

Title: Produce Forest Plots to Visualize Covariate Effects
Description: Produce forest plots to visualize covariate effects using either the command line or an interactive 'Shiny' application.
Author: Samer Mouksassi [aut, cre] , Benjamin Rich [aut], Dean Attali [ctb]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>

Diff between coveffectsplot versions 1.0.6 dated 2025-01-12 and 1.0.7 dated 2025-09-15

 coveffectsplot-1.0.6/coveffectsplot/inst/shiny/rsconnect                         |only
 coveffectsplot-1.0.6/coveffectsplot/vignettes/Figure_8_4.png                     |only
 coveffectsplot-1.0.7/coveffectsplot/DESCRIPTION                                  |   17 
 coveffectsplot-1.0.7/coveffectsplot/MD5                                          |   74 
 coveffectsplot-1.0.7/coveffectsplot/NEWS.md                                      |    5 
 coveffectsplot-1.0.7/coveffectsplot/R/forest_plot.R                              |   12 
 coveffectsplot-1.0.7/coveffectsplot/build/vignette.rds                           |binary
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.R         |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.Rmd       |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.html      |   21 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PKPD_Example.html                   |   15 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.R                        |    5 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.Rmd                      |   56 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.html                     |  144 -
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.R                   |  122 +
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.Rmd                 |  127 +
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.html                |  331 ++-
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.R                 |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.Rmd               |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.html              |   44 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/app.html                            |    2 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.R    |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.Rmd  |    1 
 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.html |   23 
 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/global.r                          |   20 
 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/server.R                          |   27 
 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/text/howto.md                     |   48 
 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/ui.R                              |   14 
 coveffectsplot-1.0.7/coveffectsplot/man/covdatasim.Rd                            |   52 
 coveffectsplot-1.0.7/coveffectsplot/man/deltamethod.Rd                           |  202 -
 coveffectsplot-1.0.7/coveffectsplot/man/draw_key.Rd                              |   52 
 coveffectsplot-1.0.7/coveffectsplot/man/expand_modelframe.Rd                     |   60 
 coveffectsplot-1.0.7/coveffectsplot/man/forest_plot.Rd                           | 1040 +++++-----
 coveffectsplot-1.0.7/coveffectsplot/man/wtage.Rd                                 |   70 
 coveffectsplot-1.0.7/coveffectsplot/vignettes/Exposure_Response_Example.Rmd      |    1 
 coveffectsplot-1.0.7/coveffectsplot/vignettes/PK_Example.Rmd                     |   56 
 coveffectsplot-1.0.7/coveffectsplot/vignettes/PK_Example_full.Rmd                |  127 +
 coveffectsplot-1.0.7/coveffectsplot/vignettes/Pediatric_Cov_Sim.Rmd              |    1 
 coveffectsplot-1.0.7/coveffectsplot/vignettes/introduction_to_coveffectsplot.Rmd |    1 
 39 files changed, 1690 insertions(+), 1085 deletions(-)

More information about coveffectsplot at CRAN
Permanent link

Package SimSurvey updated to version 0.1.8 with previous version 0.1.7 dated 2025-08-22

Title: Test Surveys by Simulating Spatially-Correlated Populations
Description: Simulate age-structured populations that vary in space and time and explore the efficacy of a range of built-in or user-defined sampling protocols to reproduce the population parameters of the known population. (See Regular et al. (2020) <doi:10.1371/journal.pone.0232822> for more details).
Author: Paul Regular [aut, cre] , Jonathan Babyn [ctb], Greg Robertson [ctb]
Maintainer: Paul Regular <Paul.Regular@dfo-mpo.gc.ca>

Diff between SimSurvey versions 0.1.7 dated 2025-08-22 and 0.1.8 dated 2025-09-15

 DESCRIPTION |    8 ++++----
 MD5         |   10 +++++-----
 NAMESPACE   |    2 ++
 NEWS.md     |    3 +++
 R/data.R    |    6 +++++-
 man/land.Rd |    2 +-
 6 files changed, 20 insertions(+), 11 deletions(-)

More information about SimSurvey at CRAN
Permanent link

Package R.AlphA.Home updated to version 1.1.0 with previous version 1.0.0 dated 2025-02-11

Title: Feel at Home using R, Thanks to Shortcuts Functions Making it Simple
Description: A collection of personal functions designed to simplify and streamline common R programming tasks. This package provides reusable tools and shortcuts for frequently used calculations and workflows.
Author: Raphael Flambard [aut, cre], Adrien Cocuaud [ctb]
Maintainer: Raphael Flambard <raphael@ralpha.fr>

Diff between R.AlphA.Home versions 1.0.0 dated 2025-02-11 and 1.1.0 dated 2025-09-15

 DESCRIPTION             |   27 +-
 MD5                     |   87 ++++---
 NAMESPACE               |  119 ++++++----
 NEWS.md                 |only
 R/Rtimer.R              |only
 R/cols_pad.R            |   66 ++---
 R/compareVars.R         |  100 ++++----
 R/countSwitches.R       |  190 ++++++++--------
 R/foldAllBr.R           |  557 +++++++++++++++++++++++++-----------------------
 R/globalVariables.R     |  200 ++++++++---------
 R/importAll.R           |  347 ++++++++++++++++++-----------
 R/left_join_checks.R    |  329 ++++++++++++++--------------
 R/loadCheck.R           |only
 R/lum_0_100.R           |   74 +++---
 R/printif.R             |only
 R/quickExport.R         |only
 R/quickSave.R           |  150 ++++++------
 R/ralpha_fold.R         |only
 R/ralpha_unfold.R       |only
 R/rdate.R               |  108 ++++-----
 R/ret_lum.R             |   72 +++---
 R/root.R                |   38 +--
 R/sepThsd.R             |   64 ++---
 R/setOption.R           |only
 R/shiny_lum_0_100.R     |   74 +++---
 R/show_diff.R           |only
 R/timer.R               |  184 +++++++--------
 R/utils-position.R      |only
 README.md               |   93 +++++++-
 inst/rstudio/addins.dcf |   14 -
 man/Rtimer.Rd           |only
 man/cols_pad.Rd         |   64 ++---
 man/compareVars.Rd      |   94 ++++----
 man/countSwitches.Rd    |  144 ++++++------
 man/figures             |only
 man/foldAllBr.Rd        |   93 ++++----
 man/importAll.Rd        |  161 +++++++------
 man/left_join_checks.Rd |  152 ++++++-------
 man/loadCheck.Rd        |only
 man/lum_0_100.Rd        |   46 +--
 man/printif.Rd          |only
 man/quickExport.Rd      |only
 man/quickSave.Rd        |   72 +++---
 man/ralpha_fold.Rd      |only
 man/ralpha_unfold.Rd    |only
 man/rdate.Rd            |   92 +++----
 man/ret_lum.Rd          |   68 ++---
 man/root.Rd             |   42 +--
 man/sepThsd.Rd          |   70 +++---
 man/setOption.Rd        |only
 man/shiny_lum_0_100.Rd  |   42 +--
 man/show_diff.Rd        |only
 man/timer.Rd            |  128 +++++------
 tests                   |only
 54 files changed, 2226 insertions(+), 1935 deletions(-)

More information about R.AlphA.Home at CRAN
Permanent link

Package OneTwoSamples updated to version 1.2-0 with previous version 1.1-0 dated 2023-03-28

Title: Deal with One and Two (Normal) Samples
Description: We introduce an R function one_two_sample() which can deal with one and two (normal) samples, Ying-Ying Zhang, Yi Wei (2012) <doi:10.2991/asshm-13.2013.29>. For one normal sample x, the function reports descriptive statistics, plot, interval estimation and test of hypothesis of x. For two normal samples x and y, the function reports descriptive statistics, plot, interval estimation and test of hypothesis of x and y, respectively. It also reports interval estimation and test of hypothesis of mu1-mu2 (the difference of the means of x and y) and sigma1^2 / sigma2^2 (the ratio of the variances of x and y), tests whether x and y are from the same population, finds the correlation coefficient of x and y if x and y have the same length.
Author: Frederic Bertrand [cre] , Ying-Ying Zhang [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>

Diff between OneTwoSamples versions 1.1-0 dated 2023-03-28 and 1.2-0 dated 2025-09-15

 OneTwoSamples-1.1-0/OneTwoSamples/tests/tests_OneTwoSamples.R  |only
 OneTwoSamples-1.1-0/OneTwoSamples/vignettes/RnwToTex.R         |only
 OneTwoSamples-1.2-0/OneTwoSamples/DESCRIPTION                  |   20 -
 OneTwoSamples-1.2-0/OneTwoSamples/MD5                          |  157 +++++++++-
 OneTwoSamples-1.2-0/OneTwoSamples/NEWS.md                      |   12 
 OneTwoSamples-1.2-0/OneTwoSamples/build/partial.rdb            |binary
 OneTwoSamples-1.2-0/OneTwoSamples/build/vignette.rds           |binary
 OneTwoSamples-1.2-0/OneTwoSamples/inst/CITATION                |only
 OneTwoSamples-1.2-0/OneTwoSamples/inst/_pkgdown.yml            |only
 OneTwoSamples-1.2-0/OneTwoSamples/inst/doc/OneTwoSamples.pdf   |binary
 OneTwoSamples-1.2-0/OneTwoSamples/man/OneTwoSamples-package.Rd |    2 
 OneTwoSamples-1.2-0/OneTwoSamples/man/one_sample.Rd            |    2 
 OneTwoSamples-1.2-0/OneTwoSamples/tests/testthat               |only
 OneTwoSamples-1.2-0/OneTwoSamples/tests/testthat.R             |only
 14 files changed, 172 insertions(+), 21 deletions(-)

More information about OneTwoSamples at CRAN
Permanent link

Package Patterns updated to version 1.7 with previous version 1.6 dated 2025-07-02

Title: Deciphering Biological Networks with Patterned Heterogeneous Measurements
Description: A modeling tool dedicated to biological network modeling (Bertrand and others 2020, <doi:10.1093/bioinformatics/btaa855>). It allows for single or joint modeling of, for instance, genes and proteins. It starts with the selection of the actors that will be the used in the reverse engineering upcoming step. An actor can be included in that selection based on its differential measurement (for instance gene expression or protein abundance) or on its time course profile. Wrappers for actors clustering functions and cluster analysis are provided. It also allows reverse engineering of biological networks taking into account the observed time course patterns of the actors. Many inference functions are provided and dedicated to get specific features for the inferred network such as sparsity, robust links, high confidence links or stable through resampling links. Some simulation and prediction tools are also available for cascade networks (Jung and others 2014, <doi:10.1093/bioinformati [...truncated...]
Author: Frederic Bertrand [cre, aut] , Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>

Diff between Patterns versions 1.6 dated 2025-07-02 and 1.7 dated 2025-09-15

 DESCRIPTION                          |   24 +++--
 MD5                                  |   49 +++++++----
 NAMESPACE                            |    1 
 NEWS.md                              |    6 +
 R/Patterns-package.R                 |    4 
 R/datasets.R                         |   30 +++++++
 R/omics_array.R                      |    5 -
 README.md                            |  147 ++++++++++++++++++-----------------
 data/datalist                        |    9 +-
 data/jetsetscores.RData              |only
 inst/CITATION                        |    6 +
 inst/_pkgdown.yml                    |only
 inst/doc/ExampleCLL.Rmd              |    2 
 inst/doc/ExampleCLL.html             |    6 -
 inst/doc/IntroPatterns.Rmd           |    2 
 inst/doc/IntroPatterns.html          |    6 -
 man/Patterns-package.Rd              |    4 
 man/jetsetscores.Rd                  |only
 man/probeMerge-omics_array-method.Rd |    5 -
 tests                                |only
 vignettes/ExampleCLL.Rmd             |    2 
 vignettes/IntroPatterns.Rmd          |    2 
 22 files changed, 188 insertions(+), 122 deletions(-)

More information about Patterns at CRAN
Permanent link

Package MAINT.Data updated to version 2.7.2 with previous version 2.7.1 dated 2023-04-04

Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal and Skew-Normal distributions, considering appropriate parameterizations of the variance-covariance matrix that takes into account the intrinsic nature of interval data, and lead to four different possible configuration structures. The Skew-Normal parameters can be estimated by maximum likelihood, while Normal parameters may be estimated by maximum likelihood or robust trimmed maximum likelihood methods.
Author: Pedro Duarte Silva [aut, cre], Paula Brito [aut]
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>

Diff between MAINT.Data versions 2.7.1 dated 2023-04-04 and 2.7.2 dated 2025-09-15

 CHANGELOG                     |    6 ++++
 DESCRIPTION                   |   14 +++++-----
 MD5                           |   58 +++++++++++++++++++++---------------------
 R/ClasGenMetDef.R             |    8 ++---
 R/IdtMclust_methods.R         |   48 ++++++++++++++++++++++++++--------
 R/IdtOutl_methods.R           |   42 +++++++++++++++++++++---------
 R/fasttle.R                   |    7 ++---
 R/lqda.R                      |    7 +----
 man/IdtOutl-methods.Rd        |    6 +++-
 man/MAINT.Data-package.Rd     |    4 +-
 man/RepLOptim.Rd              |    2 -
 man/RobEstControl-class.Rd    |   20 +++++++-------
 man/Robda-methods.Rd          |    2 -
 man/fasttle-methods.Rd        |    2 -
 man/pcoordplot-methos.Rd      |    8 ++++-
 src/AdMatAlgFoo.h             |    2 +
 src/AuxFoo.cpp                |    1 
 src/AuxFoo.h                  |    2 +
 src/CEMGauss.cpp              |    1 
 src/MDataGaussLogLik.h        |    2 +
 src/Makevars                  |    2 -
 src/MinMaxEgval.h             |    2 +
 src/fulltle.cpp               |    1 
 src/msnCP_Aux.cpp             |    3 +-
 src/msnCP_Aux.h               |    1 
 src/msnCP_dev.h               |    2 +
 src/msnCP_dev_grad.h          |    2 +
 src/registerDynamicSimbol.cpp |    2 -
 src/sampleint.h               |    3 +-
 src/tle.h                     |    5 +--
 30 files changed, 164 insertions(+), 101 deletions(-)

More information about MAINT.Data at CRAN
Permanent link

Package ggquickeda updated to version 0.3.2 with previous version 0.3.1 dated 2024-01-15

Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary Tables
Description: Quickly and easily perform exploratory data analysis by uploading your data as a 'csv' file. Start generating insights using 'ggplot2' plots and 'table1' tables with descriptive stats, all using an easy-to-use point and click 'Shiny' interface.
Author: Samer Mouksassi [aut, cre] , Dean Attali [aut], James Craig [aut] , Benjamin Rich [aut] , Michael Sachs [aut]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>

Diff between ggquickeda versions 0.3.1 dated 2024-01-15 and 0.3.2 dated 2025-09-15

 ggquickeda-0.3.1/ggquickeda/inst/shinyapp/rsconnect                |only
 ggquickeda-0.3.2/ggquickeda/DESCRIPTION                            |   25 
 ggquickeda-0.3.2/ggquickeda/MD5                                    |   53 
 ggquickeda-0.3.2/ggquickeda/NAMESPACE                              |    4 
 ggquickeda-0.3.2/ggquickeda/NEWS.md                                |   26 
 ggquickeda-0.3.2/ggquickeda/R/ggcontinuousexpdist.R                | 1264 ++++++++--
 ggquickeda-0.3.2/ggquickeda/R/ggkm.R                               |    6 
 ggquickeda-0.3.2/ggquickeda/R/ggkmrisktable.R                      |  217 +
 ggquickeda-0.3.2/ggquickeda/R/gglogisticexpdist.R                  | 1065 ++++++--
 ggquickeda-0.3.2/ggquickeda/R/ggresponseexpdist.R                  |only
 ggquickeda-0.3.2/ggquickeda/build/vignette.rds                     |binary
 ggquickeda-0.3.2/ggquickeda/inst/doc/AdditionalPlotsStats.html     |   22 
 ggquickeda-0.3.2/ggquickeda/inst/doc/Visualizing_Summary_Data.html |   23 
 ggquickeda-0.3.2/ggquickeda/inst/doc/app.html                      |    2 
 ggquickeda-0.3.2/ggquickeda/inst/doc/ggquickeda.html               |   16 
 ggquickeda-0.3.2/ggquickeda/inst/shinyapp/global.R                 |   26 
 ggquickeda-0.3.2/ggquickeda/inst/shinyapp/server.R                 |  311 +-
 ggquickeda-0.3.2/ggquickeda/inst/shinyapp/ui.R                     |   28 
 ggquickeda-0.3.2/ggquickeda/man/geom_km.Rd                         |   71 
 ggquickeda-0.3.2/ggquickeda/man/geom_kmband.Rd                     |   71 
 ggquickeda-0.3.2/ggquickeda/man/geom_kmticks.Rd                    |   71 
 ggquickeda-0.3.2/ggquickeda/man/ggcontinuousexpdist.Rd             |  136 -
 ggquickeda-0.3.2/ggquickeda/man/ggkmrisktable.Rd                   |   41 
 ggquickeda-0.3.2/ggquickeda/man/gglogisticexpdist.Rd               |  169 +
 ggquickeda-0.3.2/ggquickeda/man/ggresponseexpdist.Rd               |only
 ggquickeda-0.3.2/ggquickeda/man/stat_km.Rd                         |   41 
 ggquickeda-0.3.2/ggquickeda/man/stat_kmband.Rd                     |   37 
 ggquickeda-0.3.2/ggquickeda/man/stat_kmticks.Rd                    |   43 
 28 files changed, 2999 insertions(+), 769 deletions(-)

More information about ggquickeda at CRAN
Permanent link

Package conformalInference.multi readmission to version 1.1.2 with previous version 1.1.1 dated 2022-03-16

Title: Conformal Inference Tools for Regression with Multivariate Response
Description: It computes full conformal, split conformal and multi-split conformal prediction regions when the response variable is multivariate (i.e. dimension is greater than one). Moreover, the package also contains plot functions to visualize the output of the full and split conformal functions. To guarantee consistency, the package structure mimics the univariate package 'conformalInference' by Ryan Tibshirani. See Lei, G’sell, Rinaldo, Tibshirani, & Wasserman (2018) <doi:10.1080/01621459.2017.1307116> for full and split conformal prediction in regression, and Barber, Candès, Ramdas, & Tibshirani (2023) <doi:10.1214/23-AOS2276> for extensions beyond exchangeability.
Author: Jacopo Diquigiovanni [aut, ths], Matteo Fontana [aut, ths], Aldo Solari [aut, ths], Simone Vantini [aut, ths], Paolo Vergottini [aut, cre], Ryan Tibshirani [ctb]
Maintainer: Paolo Vergottini <paolo.vergottini@gmail.com>

This is a re-admission after prior archival of version 1.1.1 dated 2022-03-16

Diff between conformalInference.multi versions 1.1.1 dated 2022-03-16 and 1.1.2 dated 2025-09-15

 conformalInference.multi-1.1.1/conformalInference.multi/NEWS.md                                 |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/bikeMi.R                              |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/common.R                              |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/jackplus.R                            |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/msplit.R                              |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/plot.multidim.R                       |only
 conformalInference.multi-1.1.1/conformalInference.multi/R/s.regression.R                        |only
 conformalInference.multi-1.1.1/conformalInference.multi/data                                    |only
 conformalInference.multi-1.1.1/conformalInference.multi/inst/examples/ex.jackplus.R             |only
 conformalInference.multi-1.1.1/conformalInference.multi/man/bikeMi.Rd                           |only
 conformalInference.multi-1.1.1/conformalInference.multi/man/conformal.multidim.jackplus.Rd      |only
 conformalInference.multi-1.1.2/conformalInference.multi/DESCRIPTION                             |   49 
 conformalInference.multi-1.1.2/conformalInference.multi/LICENSE                                 |only
 conformalInference.multi-1.1.2/conformalInference.multi/MD5                                     |   62 -
 conformalInference.multi-1.1.2/conformalInference.multi/NAMESPACE                               |    2 
 conformalInference.multi-1.1.2/conformalInference.multi/R/check.R                               |  500 ++++------
 conformalInference.multi-1.1.2/conformalInference.multi/R/conformalInference.multi-package.R    |   33 
 conformalInference.multi-1.1.2/conformalInference.multi/R/full.R                                |  384 +++----
 conformalInference.multi-1.1.2/conformalInference.multi/R/glmnet.R                              |  288 ++---
 conformalInference.multi-1.1.2/conformalInference.multi/R/interval.build.R                      |only
 conformalInference.multi-1.1.2/conformalInference.multi/R/lm.R                                  |  120 +-
 conformalInference.multi-1.1.2/conformalInference.multi/R/mean.R                                |   98 +
 conformalInference.multi-1.1.2/conformalInference.multi/R/multisplit.R                          |only
 conformalInference.multi-1.1.2/conformalInference.multi/R/plot.full.R                           |only
 conformalInference.multi-1.1.2/conformalInference.multi/R/plot.split.R                          |only
 conformalInference.multi-1.1.2/conformalInference.multi/R/s_regression.R                        |only
 conformalInference.multi-1.1.2/conformalInference.multi/R/split.R                               |  382 +++----
 conformalInference.multi-1.1.2/conformalInference.multi/README.md                               |only
 conformalInference.multi-1.1.2/conformalInference.multi/build                                   |only
 conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.full.R                 |   48 
 conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.msplit.R               |   50 -
 conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.split.R                |   50 -
 conformalInference.multi-1.1.2/conformalInference.multi/man/computing_s_regression.Rd           |   29 
 conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.full.Rd          |   46 
 conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.msplit.Rd        |  152 +--
 conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.split.Rd         |   58 -
 conformalInference.multi-1.1.2/conformalInference.multi/man/conformalInference.multi-package.Rd |   31 
 conformalInference.multi-1.1.2/conformalInference.multi/man/glmnet.funs.Rd                      |   11 
 conformalInference.multi-1.1.2/conformalInference.multi/man/lm_multi.Rd                         |   29 
 conformalInference.multi-1.1.2/conformalInference.multi/man/mean_multi.Rd                       |   28 
 conformalInference.multi-1.1.2/conformalInference.multi/man/plot_multidim.Rd                    |   77 -
 conformalInference.multi-1.1.2/conformalInference.multi/man/plot_multidim_full.Rd               |only
 42 files changed, 1184 insertions(+), 1343 deletions(-)

More information about conformalInference.multi at CRAN
Permanent link

Package sstvars updated to version 1.2.2 with previous version 1.2.1 dated 2025-06-19

Title: Toolkit for Reduced Form and Structural Smooth Transition Vector Autoregressive Models
Description: Penalized and non-penalized maximum likelihood estimation of smooth transition vector autoregressive models with various types of transition weight functions, conditional distributions, and identification methods. Constrained estimation with various types of constraints is available. Residual based model diagnostics, forecasting, simulations, counterfactual analysis, and computation of impulse response functions, generalized impulse response functions, generalized forecast error variance decompositions, as well as historical decompositions. See Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>, Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>, Markku Lanne, Savi Virolainen (2025) <doi:10.1016/j.jedc.2025.105162>, Savi Virolainen (2025) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>

Diff between sstvars versions 1.2.1 dated 2025-06-19 and 1.2.2 dated 2025-09-15

 DESCRIPTION                    |   10 ++--
 MD5                            |   84 +++++++++++++++++++-------------------
 NEWS.md                        |    8 +++
 R/MAINest.R                    |    4 -
 R/STVARconstruction.R          |   75 ++++++++++++++++++++++++----------
 R/argumentChecks.R             |    4 -
 R/data.R                       |    8 +--
 R/geneticAlgorithm.R           |   13 ++---
 R/loglikelihood.R              |    4 -
 README.md                      |    4 -
 configure                      |   14 +++---
 data/usacpu.rda                |binary
 inst/doc/sstvars-vignette.Rnw  |   89 ++++++++++++++++++++---------------------
 inst/doc/sstvars-vignette.pdf  |binary
 man/GAfit.Rd                   |    6 +-
 man/STVAR.Rd                   |    4 -
 man/alt_stvar.Rd               |    4 -
 man/change_regime.Rd           |    4 -
 man/check_params.Rd            |    4 -
 man/diagnostic_plot.Rd         |    4 -
 man/fitSTVAR.Rd                |    4 -
 man/get_alpha_mt.Rd            |    4 -
 man/get_residuals.Rd           |    4 -
 man/in_paramspace.Rd           |    4 -
 man/iterate_more.Rd            |    4 -
 man/loglikelihood.Rd           |    4 -
 man/n_params.Rd                |    4 -
 man/plot_struct_shocks.Rd      |    4 -
 man/predict.stvar.Rd           |    4 -
 man/profile_logliks.Rd         |    4 -
 man/random_covmat.Rd           |    2 
 man/random_ind.Rd              |    6 +-
 man/reform_constrained_pars.Rd |    4 -
 man/regime_distance.Rd         |    4 -
 man/simulate.stvar.Rd          |    4 -
 man/simulate_from_regime.Rd    |    4 -
 man/simulate_stvar_int.Rd      |    4 -
 man/smart_ind.Rd               |    6 +-
 man/standard_errors.Rd         |    4 -
 man/swap_parametrization.Rd    |    4 -
 man/usacpu.Rd                  |    8 +--
 vignettes/refs.bib             |    8 ++-
 vignettes/sstvars-vignette.Rnw |   89 ++++++++++++++++++++---------------------
 43 files changed, 286 insertions(+), 244 deletions(-)

More information about sstvars at CRAN
Permanent link

Package SouthKoreAPIs updated to version 0.1.1 with previous version 0.1.0 dated 2025-09-01

Title: Access South Korean Data via Public APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including 'Nager.Date', 'World Bank API', and 'REST Countries API', retrieving real-time or historical data related to South Korea, such as holidays, economic indicators, and international demographic and geopolitical indicators. Additionally, the package includes one of the largest curated collections of open datasets focused on South Korea, covering topics such as public health outbreaks, demographics, social surveys, elections, economic indicators, natural disasters, administrative divisions, air quality, climate data, energy consumption, cultural information, and financial markets. The package supports reproducible research and teaching by integrating reliable international APIs and structured datasets from public, academic, and government sources. For more information on the APIs, see: 'Nager.Date' <https://date.nager.at/Api>, 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>, [...truncated...]
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>

Diff between SouthKoreAPIs versions 0.1.0 dated 2025-09-01 and 0.1.1 dated 2025-09-15

 DESCRIPTION                                          |    6 -
 MD5                                                  |  103 +++++++++----------
 NEWS.md                                              |only
 R/data-documentation.R                               |    2 
 R/get_country_info_kr.R                              |   50 ++++-----
 R/get_southkorea_child_mortality.R                   |    2 
 R/get_southkorea_cpi.R                               |    2 
 R/get_southkorea_energy_use.R                        |    2 
 R/get_southkorea_gdp.R                               |    2 
 R/get_southkorea_holidays.R                          |    2 
 R/get_southkorea_hospital_beds.R                     |    2 
 R/get_southkorea_life_expectancy.R                   |    2 
 R/get_southkorea_literacy_rate.R                     |    2 
 R/get_southkorea_population.R                        |    2 
 R/get_southkorea_unemployment.R                      |    2 
 R/southkoreapis-package.R                            |    2 
 R/utils.R                                            |    2 
 R/view_datasets_SouthKoreAPIs.R                      |    2 
 inst/CITATION                                        |    2 
 inst/doc/SouthKoreAPIs_vignette.html                 |    5 
 man/get_country_info_kr.Rd                           |   18 ---
 tests/testthat/test-AutoOwnershipKorea_df.R          |    2 
 tests/testthat/test-GasSales_Korea_tbl_df.R          |    2 
 tests/testthat/test-HeptathlonSeoul1988_df.R         |    2 
 tests/testthat/test-KOSPI200_list.R                  |    2 
 tests/testthat/test-KPopIdols_tbl_df.R               |    2 
 tests/testthat/test-KoreanBoneDensity_df.R           |    2 
 tests/testthat/test-KoreanElection2017_df.R          |    2 
 tests/testthat/test-KoreanSocialSurvey_tbl_df.R      |    2 
 tests/testthat/test-MERSKorea2015_list.R             |    2 
 tests/testthat/test-NFIColumnNames_df.R              |    2 
 tests/testthat/test-RegionalKorea_df.R               |    2 
 tests/testthat/test-SeoulAdminAreas_sf.R             |    2 
 tests/testthat/test-SeoulDistrictPop_df.R            |    2 
 tests/testthat/test-SeoulH3Data_tbl_df.R             |    2 
 tests/testthat/test-SeoulMosquito_tbl_df.R           |    2 
 tests/testthat/test-SolarRadiation_df.R              |    2 
 tests/testthat/test-SouthKoreaBirths_tbl_df.R        |    2 
 tests/testthat/test-SouthKoreaCovid19_tbl_df.R       |    2 
 tests/testthat/test-demographicsKR_tbl_df.R          |    2 
 tests/testthat/test-get_country_info_kr.R            |   19 ++-
 tests/testthat/test-get_southkorea_child_mortality.R |    2 
 tests/testthat/test-get_southkorea_cpi.R             |    2 
 tests/testthat/test-get_southkorea_energy_use.R      |    2 
 tests/testthat/test-get_southkorea_gdp.R             |    2 
 tests/testthat/test-get_southkorea_holidays.R        |    2 
 tests/testthat/test-get_southkorea_hospital_beds.R   |    2 
 tests/testthat/test-get_southkorea_life_expectancy.R |    2 
 tests/testthat/test-get_southkorea_literacy_rate.R   |    2 
 tests/testthat/test-get_southkorea_population.R      |    2 
 tests/testthat/test-get_southkorea_unemployment.R    |    2 
 tests/testthat/test-migrationflows_tbl_df.R          |    2 
 tests/testthat/test-view_datasets_SouthKoreAPIs.R    |    2 
 53 files changed, 147 insertions(+), 146 deletions(-)

More information about SouthKoreAPIs at CRAN
Permanent link

Package noctua updated to version 2.6.3 with previous version 2.6.2 dated 2023-08-08

Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI' Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws' <https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>

Diff between noctua versions 2.6.2 dated 2023-08-08 and 2.6.3 dated 2025-09-15

 noctua-2.6.2/noctua/man/Query.Rd                               |only
 noctua-2.6.2/noctua/man/backend_dbplyr_v2.Rd                   |only
 noctua-2.6.2/noctua/man/dbClearResult.Rd                       |only
 noctua-2.6.2/noctua/man/dbColumnInfo.Rd                        |only
 noctua-2.6.2/noctua/man/dbDataType.Rd                          |only
 noctua-2.6.2/noctua/man/dbDisconnect.Rd                        |only
 noctua-2.6.2/noctua/man/dbExistsTable.Rd                       |only
 noctua-2.6.2/noctua/man/dbFetch.Rd                             |only
 noctua-2.6.2/noctua/man/dbGetInfo.Rd                           |only
 noctua-2.6.2/noctua/man/dbGetPartition.Rd                      |only
 noctua-2.6.2/noctua/man/dbGetQuery.Rd                          |only
 noctua-2.6.2/noctua/man/dbGetStatement.Rd                      |only
 noctua-2.6.2/noctua/man/dbGetTables.Rd                         |only
 noctua-2.6.2/noctua/man/dbHasCompleted.Rd                      |only
 noctua-2.6.2/noctua/man/dbIsValid.Rd                           |only
 noctua-2.6.2/noctua/man/dbListFields.Rd                        |only
 noctua-2.6.2/noctua/man/dbQuote.Rd                             |only
 noctua-2.6.2/noctua/man/dbRemoveTable.Rd                       |only
 noctua-2.6.2/noctua/man/dbShow.Rd                              |only
 noctua-2.6.2/noctua/man/dbStatistics.Rd                        |only
 noctua-2.6.3/noctua/DESCRIPTION                                |   13 
 noctua-2.6.3/noctua/MD5                                        |  130 -
 noctua-2.6.3/noctua/NAMESPACE                                  |   14 
 noctua-2.6.3/noctua/NEWS.md                                    |   11 
 noctua-2.6.3/noctua/R/Connection.R                             |  922 +++-------
 noctua-2.6.3/noctua/R/DataTypes.R                              |  126 -
 noctua-2.6.3/noctua/R/Driver.R                                 |  152 -
 noctua-2.6.3/noctua/R/File_Parser.R                            |  305 ++-
 noctua-2.6.3/noctua/R/Options.R                                |  293 ++-
 noctua-2.6.3/noctua/R/Result.R                                 |  339 +--
 noctua-2.6.3/noctua/R/Table.R                                  |  456 +++-
 noctua-2.6.3/noctua/R/View.R                                   |  294 +--
 noctua-2.6.3/noctua/R/athena_low_api.R                         |   99 -
 noctua-2.6.3/noctua/R/dplyr_integration.R                      |  293 +--
 noctua-2.6.3/noctua/R/fetch_utils.R                            |    2 
 noctua-2.6.3/noctua/R/sql_translate_env.R                      |  202 +-
 noctua-2.6.3/noctua/R/utils.R                                  |  246 +-
 noctua-2.6.3/noctua/R/zzz.R                                    |   34 
 noctua-2.6.3/noctua/README.md                                  |    2 
 noctua-2.6.3/noctua/build/vignette.rds                         |binary
 noctua-2.6.3/noctua/inst/doc/aws_athena_query_caching.html     |    1 
 noctua-2.6.3/noctua/inst/doc/aws_athena_unload.html            |    1 
 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.R                  |    2 
 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.Rmd                |    2 
 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.html               |    5 
 noctua-2.6.3/noctua/inst/doc/changing_backend_file_parser.html |    1 
 noctua-2.6.3/noctua/inst/doc/convert_and_save_cost.Rmd         |    2 
 noctua-2.6.3/noctua/inst/doc/convert_and_save_cost.html        |    3 
 noctua-2.6.3/noctua/inst/doc/getting_started.html              |    1 
 noctua-2.6.3/noctua/inst/doc/how_to_retry.html                 |    1 
 noctua-2.6.3/noctua/man/AthenaConnection.Rd                    |  133 +
 noctua-2.6.3/noctua/man/AthenaDriver.Rd                        |   14 
 noctua-2.6.3/noctua/man/AthenaListObjects.Rd                   |only
 noctua-2.6.3/noctua/man/AthenaPreviewObject.Rd                 |only
 noctua-2.6.3/noctua/man/AthenaResult.Rd                        |only
 noctua-2.6.3/noctua/man/AthenaWriteTables.Rd                   |   16 
 noctua-2.6.3/noctua/man/assume_role.Rd                         |    4 
 noctua-2.6.3/noctua/man/athena.Rd                              |    4 
 noctua-2.6.3/noctua/man/backend_dbplyr.Rd                      |only
 noctua-2.6.3/noctua/man/backend_dbplyr_v1.Rd                   |    3 
 noctua-2.6.3/noctua/man/dbConnect-AthenaDriver-method.Rd       |   71 
 noctua-2.6.3/noctua/man/dbConvertTable.Rd                      |   47 
 noctua-2.6.3/noctua/man/dbListTables.Rd                        |    4 
 noctua-2.6.3/noctua/man/db_compute.Rd                          |   36 
 noctua-2.6.3/noctua/man/db_connection_describe.Rd              |    2 
 noctua-2.6.3/noctua/man/db_copy_to.Rd                          |    8 
 noctua-2.6.3/noctua/man/db_desc.Rd                             |    2 
 noctua-2.6.3/noctua/man/dbplyr_edition.Rd                      |    4 
 noctua-2.6.3/noctua/man/noctua-package.Rd                      |    3 
 noctua-2.6.3/noctua/man/noctua_options.Rd                      |   20 
 noctua-2.6.3/noctua/man/session_token.Rd                       |    2 
 noctua-2.6.3/noctua/man/sqlCreateTable.Rd                      |    4 
 noctua-2.6.3/noctua/man/sqlData.Rd                             |    4 
 noctua-2.6.3/noctua/man/sql_translate_env.Rd                   |   12 
 noctua-2.6.3/noctua/man/work_group.Rd                          |   21 
 noctua-2.6.3/noctua/tests/testthat/test-dplyr-compute.R        |   49 
 noctua-2.6.3/noctua/vignettes/aws_s3_backend.Rmd               |    2 
 noctua-2.6.3/noctua/vignettes/convert_and_save_cost.Rmd        |    2 
 78 files changed, 2428 insertions(+), 1991 deletions(-)

More information about noctua at CRAN
Permanent link

Package Eunomia updated to version 2.1.0 with previous version 2.0.0 dated 2024-04-23

Title: Standard Dataset Manager for Observational Medical Outcomes Partnership Common Data Model Sample Datasets
Description: Facilitates access to sample datasets from the 'EunomiaDatasets' repository (<https://github.com/ohdsi/EunomiaDatasets>).
Author: Frank DeFalco [aut, cre], Martijn Schuemie [aut], Anthony Sena [aut], Natthawut Adulyanukosol [aut], Star Liu [aut], Adam Black [aut], Observational Health Data Science and Informatics [cph]
Maintainer: Frank DeFalco <fdefalco@ohdsi.org>

Diff between Eunomia versions 2.0.0 dated 2024-04-23 and 2.1.0 dated 2025-09-15

 DESCRIPTION                        |   10 
 MD5                                |   46 +-
 NAMESPACE                          |   34 +-
 NEWS.md                            |   78 ++--
 R/Cohorts.R                        |  155 ++++-----
 R/Connection.R                     |  329 ++++++++++----------
 R/Eunomia.R                        |   46 +-
 R/EunomiaData.R                    |  582 ++++++++++++++++++-------------------
 README.md                          |  156 ++++-----
 inst/settings/CohortsToCreate.csv  |   10 
 inst/sql/CreateCohortTable.sql     |  104 +++---
 man/Eunomia-package.Rd             |   74 ++--
 man/createCohorts.Rd               |   58 +--
 man/downloadEunomiaData.Rd         |   80 ++---
 man/exportDataFiles.Rd             |   62 +--
 man/extractLoadData.Rd             |   92 ++---
 man/getDatabaseFile.Rd             |  120 +++----
 man/getEunomiaConnectionDetails.Rd |   54 +--
 man/loadDataFiles.Rd               |   80 ++---
 tests/testthat.R                   |    6 
 tests/testthat/setup.R             |   24 -
 tests/testthat/test-DBI.R          |   88 ++---
 tests/testthat/test-EunomiaData.R  |   70 ++--
 tests/testthat/test-basic.R        |  171 +++++-----
 24 files changed, 1266 insertions(+), 1263 deletions(-)

More information about Eunomia at CRAN
Permanent link

Package StreamCatTools updated to version 0.7.0 with previous version 0.6.0 dated 2025-09-02

Title: 'StreamCatTools'
Description: Tools for using the 'StreamCat' and 'LakeCat' API and interacting with the 'StreamCat' and 'LakeCat' database. Convenience functions in the package wrap the API for 'StreamCat' on <https://api.epa.gov/StreamCat/streams/metrics>.
Author: Marc Weber [aut, cre], Ryan Hill [ctb], Travis Hudson [ctb], Allen Brookes [ctb], David Rebhuhn [ctb], Zachary Smith [ctb]
Maintainer: Marc Weber <weber.marc@epa.gov>

Diff between StreamCatTools versions 0.6.0 dated 2025-09-02 and 0.7.0 dated 2025-09-15

 DESCRIPTION                         |   15 
 MD5                                 |   30 
 NEWS.md                             |   30 
 R/lc_get_data.R                     |   74 -
 R/lc_get_params.R                   |    2 
 R/sc_get_data.R                     |   39 -
 R/sc_get_params.R                   |    2 
 README.md                           |   27 
 inst/doc/Applications.html          |   34 
 inst/doc/Introduction.html          | 1338 +++++++++++++++++++++---------------
 inst/doc/LakeCat.R                  |    2 
 inst/doc/LakeCat.Rmd                |    2 
 inst/doc/LakeCat.html               |    5 
 tests/testthat/test-lc_get_params.R |   11 
 tests/testthat/test-sc_get_params.R |    4 
 vignettes/LakeCat.Rmd               |    2 
 16 files changed, 909 insertions(+), 708 deletions(-)

More information about StreamCatTools at CRAN
Permanent link

Package pvaluefunctions updated to version 1.6.3 with previous version 1.6.2 dated 2021-11-30

Title: Creates and Plots P-Value Functions, S-Value Functions, Confidence Distributions and Confidence Densities
Description: Contains functions to compute and plot confidence distributions, confidence densities, p-value functions and s-value (surprisal) functions for several commonly used estimates. Instead of just calculating one p-value and one confidence interval, p-value functions display p-values and confidence intervals for many levels thereby allowing to gauge the compatibility of several parameter values with the data. These methods are discussed by Infanger D, Schmidt-Trucksäss A. (2019) <doi:10.1002/sim.8293>; Poole C. (1987) <doi:10.2105/AJPH.77.2.195>; Schweder T, Hjort NL. (2002) <doi:10.1111/1467-9469.00285>; Bender R, Berg G, Zeeb H. (2005) <doi:10.1002/bimj.200410104> ; Singh K, Xie M, Strawderman WE. (2007) <doi:10.1214/074921707000000102>; Rothman KJ, Greenland S, Lash TL. (2008, ISBN:9781451190052); Amrhein V, Trafimow D, Greenland S. (2019) <doi:10.1080/00031305.2018.1543137>; Greenland S. (2019) <doi:10.1080/00031305.2018.1529625> and Rafi Z, Gre [...truncated...]
Author: Denis Infanger [aut, cre]
Maintainer: Denis Infanger <denis.infanger@unibas.ch>

Diff between pvaluefunctions versions 1.6.2 dated 2021-11-30 and 1.6.3 dated 2025-09-15

 DESCRIPTION                  |    9 
 MD5                          |   16 
 NEWS.md                      |    6 
 R/confidence_distributions.R |   36 
 build/vignette.rds           |binary
 inst/doc/pvaluefun.R         |   10 
 inst/doc/pvaluefun.Rmd       |    4 
 inst/doc/pvaluefun.html      | 1615 ++++++++++++++++++++++++++-----------------
 vignettes/pvaluefun.Rmd      |    4 
 9 files changed, 1058 insertions(+), 642 deletions(-)

More information about pvaluefunctions at CRAN
Permanent link

Package elmNNRcpp updated to version 1.0.5 with previous version 1.0.4 dated 2022-01-27

Title: The Extreme Learning Machine Algorithm
Description: Training and predict functions for Single Hidden-layer Feedforward Neural Networks (SLFN) using the Extreme Learning Machine (ELM) algorithm. The ELM algorithm differs from the traditional gradient-based algorithms for very short training times (it doesn't need any iterative tuning, this makes learning time very fast) and there is no need to set any other parameters like learning rate, momentum, epochs, etc. This is a reimplementation of the 'elmNN' package using 'RcppArmadillo' after the 'elmNN' package was archived. For more information, see "Extreme learning machine: Theory and applications" by Guang-Bin Huang, Qin-Yu Zhu, Chee-Kheong Siew (2006), Elsevier B.V, <doi:10.1016/j.neucom.2005.12.126>.
Author: Lampros Mouselimis [aut, cre] , Alberto Gosso [aut], Edwin de Jonge [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between elmNNRcpp versions 1.0.4 dated 2022-01-27 and 1.0.5 dated 2025-09-15

 DESCRIPTION                            |   19 
 MD5                                    |   18 
 NEWS.md                                |    7 
 README.md                              |    5 
 build/vignette.rds                     |binary
 inst/doc/extreme_learning_machine.R    |  198 +++----
 inst/doc/extreme_learning_machine.html |  827 +++++++++++++++++++++------------
 src/Makevars                           |    4 
 src/Makevars.win                       |    6 
 src/utils.cpp                          |    1 
 10 files changed, 662 insertions(+), 423 deletions(-)

More information about elmNNRcpp at CRAN
Permanent link

Package cryptoQuotes updated to version 1.3.3 with previous version 1.3.2 dated 2024-11-07

Title: Open Access to Cryptocurrency Market Data, Sentiment Indicators and Interactive Charts
Description: This high-level API client provides open access to cryptocurrency market data, sentiment indicators, and interactive charting tools. The data is sourced from major cryptocurrency exchanges via 'curl' and returned in 'xts'-format. The data comes in open, high, low, and close (OHLC) format with flexible granularity, ranging from seconds to months. This flexibility makes it ideal for developing and backtesting trading strategies or conducting detailed market analysis.
Author: Serkan Korkmaz [cre, aut, ctb, cph] , Jonas Cuzulan Hirani [ctb]
Maintainer: Serkan Korkmaz <serkor1@duck.com>

Diff between cryptoQuotes versions 1.3.2 dated 2024-11-07 and 1.3.3 dated 2025-09-15

 cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote(deficiency)-1.png |only
 cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote(deficieny)-1.png  |only
 cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-unnamed-chunk-3-1.png        |only
 cryptoQuotes-1.3.3/cryptoQuotes/DESCRIPTION                                     |   13 
 cryptoQuotes-1.3.3/cryptoQuotes/MD5                                             |  207 ++--
 cryptoQuotes-1.3.3/cryptoQuotes/NAMESPACE                                       |    1 
 cryptoQuotes-1.3.3/cryptoQuotes/NEWS.md                                         |   74 -
 cryptoQuotes-1.3.3/cryptoQuotes/R/ATOM.R                                        |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/R/FUN.R                                         |   33 
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_binance.R                                 |  154 +--
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_bitmart.R                                 |  118 --
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_bybit.R                                   |  132 +-
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_cmc.R                                     |only
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_cryptocom.R                               |  106 --
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_huobi.R                                   |  135 +-
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_kraken.R                                  |  243 ++--
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_kucoin.R                                  |  226 ++--
 cryptoQuotes-1.3.3/cryptoQuotes/R/api_mexc.R                                    |  111 +-
 cryptoQuotes-1.3.3/cryptoQuotes/R/available_exchanges.R                         |   19 
 cryptoQuotes-1.3.3/cryptoQuotes/R/available_intervals.R                         |   34 
 cryptoQuotes-1.3.3/cryptoQuotes/R/available_tickers.R                           |   43 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart.R                                       |  125 --
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_bollingerbands.R                        |   31 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_donchian.R                              |   21 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_event.R                                 |   17 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_fgi.R                                   |   15 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_lsr.R                                   |   25 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_ma.R                                    |  196 +--
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_macd.R                                  |   82 -
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_quote.R                                 |  101 --
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_rsi.R                                   |   33 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_smi.R                                   |   45 
 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_volume.R                                |   64 -
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_fgi.R                                     |   27 
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_fundingrate.R                             |   40 
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_lsratio.R                                 |  102 --
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_mcap.R                                    |only
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_openinterest.R                            |   67 -
 cryptoQuotes-1.3.3/cryptoQuotes/R/get_quote.R                                   |   86 -
 cryptoQuotes-1.3.3/cryptoQuotes/R/helper.R                                      |  324 ++----
 cryptoQuotes-1.3.3/cryptoQuotes/R/store_xts.R                                   |   27 
 cryptoQuotes-1.3.3/cryptoQuotes/R/utils.R                                       |  132 +-
 cryptoQuotes-1.3.3/cryptoQuotes/R/zzz.R                                         |   18 
 cryptoQuotes-1.3.3/cryptoQuotes/README.md                                       |  151 +--
 cryptoQuotes-1.3.3/cryptoQuotes/build/vignette.rds                              |binary
 cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/cryptoQuotes.html                      |  413 ++++----
 cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/custom_indicators.html                 |  435 ++++----
 cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/usecase.R                              |   22 
 cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/usecase.html                           |  322 +++---
 cryptoQuotes-1.3.3/cryptoQuotes/man/add_event.Rd                                |   22 
 cryptoQuotes-1.3.3/cryptoQuotes/man/alma.Rd                                     |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/available_exchanges.Rd                      |    2 
 cryptoQuotes-1.3.3/cryptoQuotes/man/available_tickers.Rd                        |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/bollinger_bands.Rd                          |    8 
 cryptoQuotes-1.3.3/cryptoQuotes/man/calibrate_window.Rd                         |    5 
 cryptoQuotes-1.3.3/cryptoQuotes/man/chart.Rd                                    |   19 
 cryptoQuotes-1.3.3/cryptoQuotes/man/dema.Rd                                     |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/donchian_channel.Rd                         |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/ema.Rd                                      |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/evwma.Rd                                    |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_FUN.R                          |    5 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_MAindicator.R                  |    2 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_addEvents.R                    |   22 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_availableExchanges.R           |    2 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_charting.R                     |    8 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_klinechart.R                   |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_mktCap.R                       |only
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_ohlcchart.R                    |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_plinechart.R                   |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-3-1.png          |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-4-1.png          |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-5-1.png          |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-7-1.png          |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-8-1.png          |only
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/README-chartquote-1.png             |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/README-unnamed-chunk-1-1.png        |binary
 cryptoQuotes-1.3.3/cryptoQuotes/man/get_lsratio.Rd                              |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/get_mktcap.Rd                               |only
 cryptoQuotes-1.3.3/cryptoQuotes/man/get_openinterest.Rd                         |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/get_quote.Rd                                |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/hma.Rd                                      |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/kline.Rd                                    |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/macd.Rd                                     |   10 
 cryptoQuotes-1.3.3/cryptoQuotes/man/ohlc.Rd                                     |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/pline.Rd                                    |    4 
 cryptoQuotes-1.3.3/cryptoQuotes/man/remove_bound.Rd                             |    5 
 cryptoQuotes-1.3.3/cryptoQuotes/man/rsi.Rd                                      |   10 
 cryptoQuotes-1.3.3/cryptoQuotes/man/sma.Rd                                      |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/smi.Rd                                      |   18 
 cryptoQuotes-1.3.3/cryptoQuotes/man/split_window.Rd                             |    5 
 cryptoQuotes-1.3.3/cryptoQuotes/man/volume.Rd                                   |    8 
 cryptoQuotes-1.3.3/cryptoQuotes/man/vwap.Rd                                     |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/wma.Rd                                      |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/man/write_xts.Rd                                |    2 
 cryptoQuotes-1.3.3/cryptoQuotes/man/zlema.Rd                                    |    6 
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-CICD.R                      |  503 ++++------
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-FGIndex.R                   |   49 
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-FUN.R                       |   97 -
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-availableTickers.R          |  280 ++---
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-charting.R                  |  425 +++-----
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getFNG.R                    |   59 -
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getFundingrate.R            |  116 +-
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getLSRatio.R                |  160 +--
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getOpeninterest.R           |  109 +-
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getQuote.R                  |  295 ++---
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-globalmktcap.R              |only
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-infer_interval.R            |  197 +--
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-is-date.R                   |   54 -
 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-store_xts.R                 |   65 -
 109 files changed, 3397 insertions(+), 3839 deletions(-)

More information about cryptoQuotes at CRAN
Permanent link

Package backbone updated to version 3.0.0 with previous version 2.1.5 dated 2025-07-29

Title: Extracts the Backbone from Networks
Description: An implementation of methods for extracting a sparse unweighted network (i.e. a backbone) from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network (e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021 <doi:10.1038/s41598-021-03238-3>).
Author: Zachary Neal [aut, cre] , Rachel Domagalski [ctb], Bruce Sagan [ctb], Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>

Diff between backbone versions 2.1.5 dated 2025-07-29 and 3.0.0 dated 2025-09-15

 backbone-2.1.5/backbone/R/backbone.extract.R                   |only
 backbone-2.1.5/backbone/R/backbone.suggest.R                   |only
 backbone-2.1.5/backbone/R/bicm.R                               |only
 backbone-2.1.5/backbone/R/disparity.R                          |only
 backbone-2.1.5/backbone/R/fastball.R                           |only
 backbone-2.1.5/backbone/R/fdsm.R                               |only
 backbone-2.1.5/backbone/R/fixedcol.R                           |only
 backbone-2.1.5/backbone/R/fixedfill.R                          |only
 backbone-2.1.5/backbone/R/fixedrow.R                           |only
 backbone-2.1.5/backbone/R/global.R                             |only
 backbone-2.1.5/backbone/R/lans.R                               |only
 backbone-2.1.5/backbone/R/logit.R                              |only
 backbone-2.1.5/backbone/R/mlf.R                                |only
 backbone-2.1.5/backbone/R/osdsm.R                              |only
 backbone-2.1.5/backbone/R/pb.R                                 |only
 backbone-2.1.5/backbone/R/sdsm.R                               |only
 backbone-2.1.5/backbone/R/sparsify.R                           |only
 backbone-2.1.5/backbone/R/write.narrative.R                    |only
 backbone-2.1.5/backbone/man/backbone.extract.Rd                |only
 backbone-2.1.5/backbone/man/backbone.suggest.Rd                |only
 backbone-2.1.5/backbone/man/figures/workflow.png               |only
 backbone-2.1.5/backbone/man/frommatrix.Rd                      |only
 backbone-2.1.5/backbone/man/global.Rd                          |only
 backbone-2.1.5/backbone/man/logit.Rd                           |only
 backbone-2.1.5/backbone/man/loglikelihood_bicm.Rd              |only
 backbone-2.1.5/backbone/man/loglikelihood_hessian_diag_bicm.Rd |only
 backbone-2.1.5/backbone/man/loglikelihood_prime_bicm.Rd        |only
 backbone-2.1.5/backbone/man/osdsm.Rd                           |only
 backbone-2.1.5/backbone/man/pb.Rd                              |only
 backbone-2.1.5/backbone/man/sparsify.Rd                        |only
 backbone-2.1.5/backbone/man/sparsify.with.geometric.Rd         |only
 backbone-2.1.5/backbone/man/sparsify.with.gspar.Rd             |only
 backbone-2.1.5/backbone/man/sparsify.with.hypergeometric.Rd    |only
 backbone-2.1.5/backbone/man/sparsify.with.jaccard.Rd           |only
 backbone-2.1.5/backbone/man/sparsify.with.localdegree.Rd       |only
 backbone-2.1.5/backbone/man/sparsify.with.lspar.Rd             |only
 backbone-2.1.5/backbone/man/sparsify.with.meetmin.Rd           |only
 backbone-2.1.5/backbone/man/sparsify.with.quadrilateral.Rd     |only
 backbone-2.1.5/backbone/man/sparsify.with.simmelian.Rd         |only
 backbone-2.1.5/backbone/man/sparsify.with.skeleton.Rd          |only
 backbone-2.1.5/backbone/man/tomatrix.Rd                        |only
 backbone-2.1.5/backbone/man/trials.needed.Rd                   |only
 backbone-2.1.5/backbone/man/write.narrative.Rd                 |only
 backbone-3.0.0/backbone/DESCRIPTION                            |   25 
 backbone-3.0.0/backbone/MD5                                    |  112 -
 backbone-3.0.0/backbone/NAMESPACE                              |   20 
 backbone-3.0.0/backbone/NEWS.md                                |   11 
 backbone-3.0.0/backbone/R/backbone.R                           |   29 
 backbone-3.0.0/backbone/R/backbone_from_projection.R           |only
 backbone-3.0.0/backbone/R/backbone_from_unweighted.R           |only
 backbone-3.0.0/backbone/R/backbone_from_weighted.R             |only
 backbone-3.0.0/backbone/R/depricated.R                         |only
 backbone-3.0.0/backbone/R/functions_projection.R               |only
 backbone-3.0.0/backbone/R/functions_unweighted.R               |only
 backbone-3.0.0/backbone/R/functions_weighted.R                 |only
 backbone-3.0.0/backbone/R/senate108.R                          |only
 backbone-3.0.0/backbone/R/utils.R                              |  516 +++--
 backbone-3.0.0/backbone/README.md                              |   22 
 backbone-3.0.0/backbone/build/vignette.rds                     |binary
 backbone-3.0.0/backbone/data                                   |only
 backbone-3.0.0/backbone/inst/doc/backbone.R                    |  115 -
 backbone-3.0.0/backbone/inst/doc/backbone.Rmd                  |  326 +--
 backbone-3.0.0/backbone/inst/doc/backbone.html                 | 1008 +++++-----
 backbone-3.0.0/backbone/inst/doc/senate.R                      |only
 backbone-3.0.0/backbone/inst/doc/senate.Rmd                    |only
 backbone-3.0.0/backbone/inst/doc/senate.html                   |only
 backbone-3.0.0/backbone/inst/doc/unit_tests.R                  |only
 backbone-3.0.0/backbone/inst/doc/unit_tests.Rmd                |only
 backbone-3.0.0/backbone/inst/doc/unit_tests.html               |only
 backbone-3.0.0/backbone/inst/tinytest/test_backbone.R          |  949 ++++++---
 backbone-3.0.0/backbone/man/backbone.Rd                        |   34 
 backbone-3.0.0/backbone/man/backbone_from_projection.Rd        |only
 backbone-3.0.0/backbone/man/backbone_from_unweighted.Rd        |only
 backbone-3.0.0/backbone/man/backbone_from_weighted.Rd          |only
 backbone-3.0.0/backbone/man/bicm.Rd                            |   10 
 backbone-3.0.0/backbone/man/disparity.Rd                       |   64 
 backbone-3.0.0/backbone/man/fastball.Rd                        |    2 
 backbone-3.0.0/backbone/man/fdsm.Rd                            |   81 
 backbone-3.0.0/backbone/man/fixedcol.Rd                        |   62 
 backbone-3.0.0/backbone/man/fixedfill.Rd                       |   63 
 backbone-3.0.0/backbone/man/fixedrow.Rd                        |   62 
 backbone-3.0.0/backbone/man/lans.Rd                            |   55 
 backbone-3.0.0/backbone/man/mlf.Rd                             |   64 
 backbone-3.0.0/backbone/man/sdsm.Rd                            |   77 
 backbone-3.0.0/backbone/man/senate108.Rd                       |only
 backbone-3.0.0/backbone/vignettes/backbone.Rmd                 |  326 +--
 backbone-3.0.0/backbone/vignettes/backbone_bib.bib             |  106 +
 backbone-3.0.0/backbone/vignettes/senate.Rmd                   |only
 backbone-3.0.0/backbone/vignettes/unit_tests.Rmd               |only
 89 files changed, 2340 insertions(+), 1799 deletions(-)

More information about backbone at CRAN
Permanent link

Package ArctosR readmission to version 0.1.2 with previous version 0.1.1 dated 2025-07-15

Title: An Interface to the 'Arctos' Database
Description: Performs requests to the 'Arctos' API to download data. Provides a set of builder classes for performing complex requests, as well as a set of simple functions for automating many common requests and workflows. More information about 'Arctos' can be found in Cicero et al. (2024) <doi:10.1371/journal.pone.0296478> or on their website <https://arctosdb.org/>.
Author: Harlan R. Williams [aut, cre], Marlon E. Cobos [aut], Jocelyn P. Colella [aut], Michelle S. Koo [aut], Vijay Barve [aut]
Maintainer: Harlan R. Williams <harlanrhwilliams@gmail.com>

This is a re-admission after prior archival of version 0.1.1 dated 2025-07-15

Diff between ArctosR versions 0.1.1 dated 2025-07-15 and 0.1.2 dated 2025-09-15

 DESCRIPTION                    |   16 +-
 MD5                            |   63 +++++----
 NAMESPACE                      |    1 
 NEWS.md                        |    7 +
 R/arctosr_doc.R                |   22 +--
 R/frontend.R                   |  248 ++++++++++++++++++++++++++------------
 R/query.R                      |   11 +
 R/request.R                    |    2 
 R/utils.R                      |    4 
 README.md                      |  261 ++++++++++++++++++++---------------------
 build/vignette.rds             |binary
 inst/doc/example.R             |only
 inst/doc/example.Rmd           |only
 inst/doc/example.html          |only
 inst/doc/overview.R            |   19 ++
 inst/doc/overview.Rmd          |   33 ++++-
 inst/doc/overview.html         |   51 +++++---
 man/ArctosR-package.Rd         |   24 +--
 man/check_for_status.Rd        |   14 +-
 man/expand_column.Rd           |   18 +-
 man/figures                    |only
 man/get_error_response.Rd      |   14 +-
 man/get_last_response_url.Rd   |   12 +
 man/get_query_parameters.Rd    |    4 
 man/get_record_count.Rd        |    8 -
 man/get_records.Rd             |   19 ++
 man/get_relationships.Rd       |only
 man/get_result_parameters.Rd   |    4 
 man/read_response_rds.Rd       |   24 ++-
 man/response_data.Rd           |   16 +-
 man/save_response_csv.Rd       |   22 +--
 man/save_response_rds.Rd       |   21 +--
 tests/testthat/test-frontend.R |   37 ++++-
 vignettes/example.Rmd          |only
 vignettes/overview.Rmd         |   33 ++++-
 35 files changed, 627 insertions(+), 381 deletions(-)

More information about ArctosR at CRAN
Permanent link

Package AHPGaussian updated to version 0.1.3 with previous version 0.1 dated 2023-06-14

Title: New Multicriteria Method: AHPGaussian
Description: Implements the Analytic Hierarchy Process (AHP) method using Gaussian normalization (AHPGaussian) to derive the relative weights of the criteria and alternatives. It also includes functions for visualizing the results and generating graphical outputs. Method as described in: dos Santos, Marcos (2021) <doi:10.13033/ijahp.v13i1.833>.
Author: Cid Edson Povoas [aut, cre] , Marcos dos Santos [aut]
Maintainer: Cid Edson Povoas <cidedson@gmail.com>

Diff between AHPGaussian versions 0.1 dated 2023-06-14 and 0.1.3 dated 2025-09-15

 AHPGaussian-0.1.3/AHPGaussian/ChangeLog                        |only
 AHPGaussian-0.1.3/AHPGaussian/DESCRIPTION                      |   56 ++---
 AHPGaussian-0.1.3/AHPGaussian/LICENSE                          |only
 AHPGaussian-0.1.3/AHPGaussian/MD5                              |   31 ++
 AHPGaussian-0.1.3/AHPGaussian/NAMESPACE                        |   29 +-
 AHPGaussian-0.1.3/AHPGaussian/R/ahpgaussian.R                  |   50 ----
 AHPGaussian-0.1.3/AHPGaussian/R/ahpgaussian.default.R          |only
 AHPGaussian-0.1.3/AHPGaussian/R/globals.R                      |    5 
 AHPGaussian-0.1.3/AHPGaussian/R/plot.ahpgaussian.R             |only
 AHPGaussian-0.1.3/AHPGaussian/R/summary.ahpgaussian.R          |only
 AHPGaussian-0.1.3/AHPGaussian/R/utils-pipe.R                   |only
 AHPGaussian-0.1.3/AHPGaussian/README.md                        |  111 +++++-----
 AHPGaussian-0.1.3/AHPGaussian/data/cellphones.rda              |only
 AHPGaussian-0.1.3/AHPGaussian/inst/WORDLIST                    |    8 
 AHPGaussian-0.1.3/AHPGaussian/man/ahpgaussian.Rd               |   68 +-----
 AHPGaussian-0.1.3/AHPGaussian/man/ahpgaussian.default.Rd       |only
 AHPGaussian-0.1.3/AHPGaussian/man/cellphones.Rd                |only
 AHPGaussian-0.1.3/AHPGaussian/man/figures                      |only
 AHPGaussian-0.1.3/AHPGaussian/man/pipe.Rd                      |only
 AHPGaussian-0.1.3/AHPGaussian/man/plot.ahpgaussian.Rd          |only
 AHPGaussian-0.1.3/AHPGaussian/man/print.summary.ahpgaussian.Rd |only
 AHPGaussian-0.1.3/AHPGaussian/man/summary.ahpgaussian.Rd       |only
 AHPGaussian-0.1.3/AHPGaussian/tests/testthat                   |only
 AHPGaussian-0.1.3/AHPGaussian/tests/testthat.R                 |only
 AHPGaussian-0.1/AHPGaussian/R/AHPGaussian-class.R              |only
 25 files changed, 178 insertions(+), 180 deletions(-)

More information about AHPGaussian at CRAN
Permanent link

Package Rpdb updated to version 2.4.1 with previous version 2.3.4 dated 2023-09-28

Title: Read, Write, Visualize and Manipulate PDB Files
Description: Provides tools to read, write, visualize Protein Data Bank (PDB) files and perform some structural manipulations.
Author: Leonard Mada [cre, ctb], Julien Ide [aut]
Maintainer: Leonard Mada <leo.mada@syonic.eu>

Diff between Rpdb versions 2.3.4 dated 2023-09-28 and 2.4.1 dated 2025-09-15

 Rpdb-2.3.4/Rpdb/R/cryst1.R                |only
 Rpdb-2.3.4/Rpdb/man/cryst1.Rd             |only
 Rpdb-2.4.1/Rpdb/DESCRIPTION               |   16 -
 Rpdb-2.4.1/Rpdb/MD5                       |  119 ++++++-----
 Rpdb-2.4.1/Rpdb/NAMESPACE                 |   21 +-
 Rpdb-2.4.1/Rpdb/NEWS.md                   |   35 +++
 Rpdb-2.4.1/Rpdb/R/Tools.R                 |only
 Rpdb-2.4.1/Rpdb/R/addAxes.R               |   14 -
 Rpdb-2.4.1/Rpdb/R/addLabels.R             |    5 
 Rpdb-2.4.1/Rpdb/R/atoms.R                 |    2 
 Rpdb-2.4.1/Rpdb/R/bond-angle-dihedral.R   |   19 +
 Rpdb-2.4.1/Rpdb/R/cellProperties.R        |   43 ++--
 Rpdb-2.4.1/Rpdb/R/centres.R               |    6 
 Rpdb-2.4.1/Rpdb/R/centres.roll.R          |only
 Rpdb-2.4.1/Rpdb/R/coords.R                |   78 +++++--
 Rpdb-2.4.1/Rpdb/R/crystal.R               |only
 Rpdb-2.4.1/Rpdb/R/distances.R             |  121 +++++++-----
 Rpdb-2.4.1/Rpdb/R/elements.R              |    2 
 Rpdb-2.4.1/Rpdb/R/format.R                |only
 Rpdb-2.4.1/Rpdb/R/merge.coords.R          |   20 +-
 Rpdb-2.4.1/Rpdb/R/mirror.R                |   21 +-
 Rpdb-2.4.1/Rpdb/R/mirrorHelpers.R         |   20 +-
 Rpdb-2.4.1/Rpdb/R/pdb.R                   |   49 ++--
 Rpdb-2.4.1/Rpdb/R/proj.R                  |only
 Rpdb-2.4.1/Rpdb/R/range.coords.R          |    2 
 Rpdb-2.4.1/Rpdb/R/read.pdb.R              |  299 +++++++++++++++++++++---------
 Rpdb-2.4.1/Rpdb/R/replicate.R             |   27 +-
 Rpdb-2.4.1/Rpdb/R/rotation.R              |   11 -
 Rpdb-2.4.1/Rpdb/R/rotationHelpers.R       |   12 -
 Rpdb-2.4.1/Rpdb/R/split.pdb.R             |   16 -
 Rpdb-2.4.1/Rpdb/R/toSymbols.R             |   66 ++++--
 Rpdb-2.4.1/Rpdb/R/translation.R           |   50 ++---
 Rpdb-2.4.1/Rpdb/R/translationHelpers.R    |   14 -
 Rpdb-2.4.1/Rpdb/R/universalConstants.R    |    2 
 Rpdb-2.4.1/Rpdb/R/viewAxis.R              |   18 -
 Rpdb-2.4.1/Rpdb/R/visualize.R             |   91 +++++----
 Rpdb-2.4.1/Rpdb/R/wrap.R                  |   24 +-
 Rpdb-2.4.1/Rpdb/R/write.pdb.R             |   49 ++--
 Rpdb-2.4.1/Rpdb/R/xyz2abc.R               |  141 +++++++-------
 Rpdb-2.4.1/Rpdb/man/addAxes.Rd            |    6 
 Rpdb-2.4.1/Rpdb/man/addLabels.Rd          |    2 
 Rpdb-2.4.1/Rpdb/man/cellProperties.Rd     |   20 +-
 Rpdb-2.4.1/Rpdb/man/centres.Rd            |    6 
 Rpdb-2.4.1/Rpdb/man/centres.ppRoll.Rd     |only
 Rpdb-2.4.1/Rpdb/man/coords.Rd             |   48 +++-
 Rpdb-2.4.1/Rpdb/man/crystal.Rd            |only
 Rpdb-2.4.1/Rpdb/man/distances.Rd          |   40 ++--
 Rpdb-2.4.1/Rpdb/man/format.pdb.title.Rd   |only
 Rpdb-2.4.1/Rpdb/man/merge.coords.Rd       |    4 
 Rpdb-2.4.1/Rpdb/man/mirror.Rd             |   18 +
 Rpdb-2.4.1/Rpdb/man/mirrorHelpers.Rd      |   16 -
 Rpdb-2.4.1/Rpdb/man/pdb.Rd                |   27 ++
 Rpdb-2.4.1/Rpdb/man/proj.line3d.Rd        |only
 Rpdb-2.4.1/Rpdb/man/read.pdb.Rd           |   37 ++-
 Rpdb-2.4.1/Rpdb/man/replicate.Rd          |    4 
 Rpdb-2.4.1/Rpdb/man/rotation.Rd           |    8 
 Rpdb-2.4.1/Rpdb/man/rotationHelpers.Rd    |   12 -
 Rpdb-2.4.1/Rpdb/man/split.pdb.Rd          |    6 
 Rpdb-2.4.1/Rpdb/man/toSymbols.Rd          |    7 
 Rpdb-2.4.1/Rpdb/man/translation.Rd        |   10 -
 Rpdb-2.4.1/Rpdb/man/translationHelpers.Rd |   14 -
 Rpdb-2.4.1/Rpdb/man/viewAxis.Rd           |    6 
 Rpdb-2.4.1/Rpdb/man/visualize.Rd          |    4 
 Rpdb-2.4.1/Rpdb/man/wrap.Rd               |    6 
 Rpdb-2.4.1/Rpdb/man/write.pdb.Rd          |    4 
 Rpdb-2.4.1/Rpdb/man/xyz2abc.Rd            |   24 +-
 66 files changed, 1063 insertions(+), 679 deletions(-)

More information about Rpdb at CRAN
Permanent link

Package ggstats updated to version 0.11.0 with previous version 0.10.0 dated 2025-07-02

Title: Extension to 'ggplot2' for Plotting Stats
Description: Provides new statistics, new geometries and new positions for 'ggplot2' and a suite of functions to facilitate the creation of statistical plots.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>

Diff between ggstats versions 0.10.0 dated 2025-07-02 and 0.11.0 dated 2025-09-15

 DESCRIPTION                              |    8 +-
 MD5                                      |   24 +++---
 NEWS.md                                  |   11 +++
 R/ggcoef_model.R                         |   67 ++++++++++++++++---
 inst/doc/ggcoef_model.R                  |    3 
 inst/doc/ggcoef_model.Rmd                |    5 +
 inst/doc/ggcoef_model.html               |  108 ++++++++++++++++---------------
 man/figures/README-unnamed-chunk-4-1.png |binary
 man/figures/README-unnamed-chunk-4-2.png |binary
 man/figures/README-unnamed-chunk-5-1.png |binary
 man/ggcoef_model.Rd                      |   18 ++++-
 tests/testthat/test-ggcoef_model.R       |   10 ++
 vignettes/ggcoef_model.Rmd               |    5 +
 13 files changed, 181 insertions(+), 78 deletions(-)

More information about ggstats at CRAN
Permanent link

Package RCPA updated to version 0.2.8 with previous version 0.2.7 dated 2025-07-28

Title: Consensus Pathway Analysis
Description: Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) <https://CRAN.R-project.org/package=CePa>.
Author: Ha Nguyen [aut, cre], Phi Bya [aut], Zeynab Maghsoudi [aut], Tin Nguyen [fnd]
Maintainer: Ha Nguyen <hvn0006@auburn.edu>

Diff between RCPA versions 0.2.7 dated 2025-07-28 and 0.2.8 dated 2025-09-15

 DESCRIPTION        |    6 +++---
 MD5                |    4 ++--
 inst/doc/RCPA.html |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about RCPA at CRAN
Permanent link

Package lavaanExtra updated to version 0.2.2 with previous version 0.2.1 dated 2024-07-01

Title: Convenience Functions for Package 'lavaan'
Description: Affords an alternative, vector-based syntax to 'lavaan', as well as other convenience functions such as naming paths and defining indirect links automatically, in addition to convenience formatting optimized for a publication and script sharing workflow.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>

Diff between lavaanExtra versions 0.2.1 dated 2024-07-01 and 0.2.2 dated 2025-09-15

 DESCRIPTION                              |   13 
 MD5                                      |   73 -
 NEWS.md                                  |  280 +++----
 R/cfa_fit_plot.R                         |    5 
 R/lavaan_cov.R                           |   11 
 R/lavaan_defined.R                       |   43 -
 R/lavaan_extract.R                       |  115 ++
 R/lavaan_reg.R                           |   40 -
 R/nice_fit.R                             |  383 +++++----
 R/nice_lavaanPlot.R                      |   11 
 README.md                                |   14 
 build/partial.rdb                        |binary
 build/vignette.rds                       |binary
 inst/WORDLIST                            |   10 
 inst/doc/example.Rmd                     | 1190 +++++++++++++++----------------
 inst/doc/example.html                    |    9 
 man/cfa_fit_plot.Rd                      |    2 
 man/lavaan_cov.Rd                        |    2 
 man/lavaan_defined.Rd                    |   33 
 man/lavaan_extract.Rd                    |   33 
 man/lavaan_reg.Rd                        |   32 
 man/lavaan_var.Rd                        |    2 
 man/nice_fit.Rd                          |    2 
 man/nice_lavaanPlot.Rd                   |    2 
 man/nice_modindices.Rd                   |    2 
 man/nice_tidySEM.Rd                      |    2 
 man/write_lavaan.Rd                      |    2 
 tests/testthat/_snaps/lavaan_defined.md  |   21 
 tests/testthat/_snaps/nice_modindices.md |   90 +-
 tests/testthat/_snaps/write_lavaan.md    |  498 ++++++------
 tests/testthat/test-cfa_fit_plot.R       |    6 
 tests/testthat/test-lavaan_defined.R     |  210 +++--
 tests/testthat/test-lavaan_reg.R         |   48 +
 tests/testthat/test-nice_fit.R           |  253 ++++--
 tests/testthat/test-nice_lavaanPlot.R    |    1 
 tests/testthat/test-nice_modindices.R    |   87 ++
 tests/testthat/test-utils.R              |only
 vignettes/example.Rmd                    | 1190 +++++++++++++++----------------
 38 files changed, 2580 insertions(+), 2135 deletions(-)

More information about lavaanExtra at CRAN
Permanent link

Package processpredictR updated to version 0.1.1 with previous version 0.1.0 dated 2023-01-17

Title: Process Prediction
Description: Means to predict process flow, such as process outcome, next activity, next time, remaining time, and remaining trace. Off-the-shelf predictive models based on the concept of Transformers are provided, as well as multiple way to customize the models. This package is partly based on work described in Zaharah A. Bukhsh, Aaqib Saeed, & Remco M. Dijkman. (2021). "ProcessTransformer: Predictive Business Process Monitoring with Transformer Network" <doi:10.48550/arXiv.2104.00721>.
Author: Ivan Esin [aut], Gert Janssenswillen [cre], Hasselt University [cph]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>

Diff between processpredictR versions 0.1.0 dated 2023-01-17 and 0.1.1 dated 2025-09-15

 processpredictR-0.1.0/processpredictR/R/evaluate_s2s.R                          |only
 processpredictR-0.1.0/processpredictR/R/predict_s2s.R                           |only
 processpredictR-0.1.1/processpredictR/DESCRIPTION                               |   20 
 processpredictR-0.1.1/processpredictR/MD5                                       |   42 
 processpredictR-0.1.1/processpredictR/NAMESPACE                                 |    6 
 processpredictR-0.1.1/processpredictR/R/compile.ppred_model.R                   |    6 
 processpredictR-0.1.1/processpredictR/R/create_model.R                          |  156 ++-
 processpredictR-0.1.1/processpredictR/R/create_vocabulary.R                     |   15 
 processpredictR-0.1.1/processpredictR/R/evaluate.ppred_model.R                  |  138 +-
 processpredictR-0.1.1/processpredictR/R/fit.ppred_model.R                       |  114 +-
 processpredictR-0.1.1/processpredictR/R/predict.ppred_model.R                   |    6 
 processpredictR-0.1.1/processpredictR/R/prepare_examples_df.R                   |   22 
 processpredictR-0.1.1/processpredictR/R/print.ppred_model.R                     |    4 
 processpredictR-0.1.1/processpredictR/R/processpredictR.R                       |    6 
 processpredictR-0.1.1/processpredictR/R/utils.R                                 |  511 ----------
 processpredictR-0.1.1/processpredictR/build/partial.rdb                         |only
 processpredictR-0.1.1/processpredictR/build/vignette.rds                        |binary
 processpredictR-0.1.1/processpredictR/inst/TransformerRemainingTrace.Rmd        |only
 processpredictR-0.1.1/processpredictR/inst/doc/process-prediction-workflow.R    |  168 +--
 processpredictR-0.1.1/processpredictR/inst/doc/process-prediction-workflow.html |  257 ++---
 processpredictR-0.1.1/processpredictR/man/create_model.Rd                       |   28 
 processpredictR-0.1.1/processpredictR/man/prepare_examples.Rd                   |    7 
 processpredictR-0.1.1/processpredictR/man/processpredictR.Rd                    |    4 
 processpredictR-0.1.1/processpredictR/man/reexports.Rd                          |    6 
 24 files changed, 527 insertions(+), 989 deletions(-)

More information about processpredictR at CRAN
Permanent link

Package marquee updated to version 1.2.1 with previous version 1.2.0 dated 2025-09-05

Title: Markdown Parser and Renderer for R Graphics
Description: Provides the mean to parse and render markdown text with grid along with facilities to define the styling of the text.
Author: Thomas Lin Pedersen [aut, cre] , Martin Mitas [aut] , Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>

Diff between marquee versions 1.2.0 dated 2025-09-05 and 1.2.1 dated 2025-09-15

 DESCRIPTION                              |    6 +++---
 MD5                                      |   14 +++++++-------
 NEWS.md                                  |    7 +++++++
 R/grob.R                                 |   17 +++++++++++------
 R/guide_marquee.R                        |   13 ++++++++-----
 inst/doc/marquee.html                    |    2 +-
 man/figures/README-unnamed-chunk-2-1.png |binary
 src/marquee.cpp                          |    4 +++-
 8 files changed, 40 insertions(+), 23 deletions(-)

More information about marquee at CRAN
Permanent link

Package fabricQueryR updated to version 0.2.0 with previous version 0.1.1 dated 2025-09-08

Title: Query Data in 'Microsoft Fabric'
Description: Query data hosted in 'Microsoft Fabric'. Provides helpers to open 'DBI' connections to 'SQL' endpoints of 'Lakehouse' and 'Data Warehouse' items; submit 'Data Analysis Expressions' ('DAX') queries to semantic model datasets in 'Microsoft Fabric' and 'Power BI'; read 'Delta Lake' tables stored in 'OneLake' ('Azure Data Lake Storage Gen2'); and execute 'Spark' code via the 'Livy API'.
Author: Luka Koning [aut, cre, cph], Kennispunt Twente [fnd]
Maintainer: Luka Koning <l.koning@kennispunttwente.nl>

Diff between fabricQueryR versions 0.1.1 dated 2025-09-08 and 0.2.0 dated 2025-09-15

 DESCRIPTION                         |   17 -
 MD5                                 |   21 -
 NAMESPACE                           |    1 
 NEWS.md                             |   11 
 R/fabric_livy.R                     |only
 R/fabric_onelake_read_delta_table.R |  561 ++++++++++++++++-----------------
 R/fabric_pbi_dax_query.R            |  610 ++++++++++++++++++------------------
 R/fabric_sql_connect.R              |  489 ++++++++++++++--------------
 R/httr2_helpers.R                   |only
 R/inform.R                          |only
 README.md                           |   36 +-
 inst                                |only
 man/fabricQueryR-package.Rd         |    2 
 man/fabric_livy_query.Rd            |only
 14 files changed, 885 insertions(+), 863 deletions(-)

More information about fabricQueryR at CRAN
Permanent link

Package stelfi readmission to version 1.0.2 with previous version 1.0.1 dated 2023-10-24

Title: Hawkes and Log-Gaussian Cox Point Processes Using Template Model Builder
Description: Fit Hawkes and log-Gaussian Cox process models with extensions. Introduced in Hawkes (1971) <doi:10.2307/2334319> a Hawkes process is a self-exciting temporal point process where the occurrence of an event immediately increases the chance of another. We extend this to consider self-inhibiting process and a non-homogeneous background rate. A log-Gaussian Cox process is a Poisson point process where the log-intensity is given by a Gaussian random field. We extend this to a joint likelihood formulation fitting a marked log-Gaussian Cox model. In addition, the package offers functionality to fit self-exciting spatiotemporal point processes. Models are fitted via maximum likelihood using 'TMB' (Template Model Builder). Where included 1) random fields are assumed to be Gaussian and are integrated over using the Laplace approximation and 2) a stochastic partial differential equation model, introduced by Lindgren, Rue, and Lindström. (2011) <doi:10.1111/j.1467-9868.2011.00777.x>, [...truncated...]
Author: Charlotte M. Jones-Todd [aut, cre, cph] , Alec van Helsdingen [aut] , Xiangjie Xue [ctb] , Joseph Reps [ctb] , Marsden Fund 3723517 [fnd], Asian Office of Aerospace Research & Development FA2386-21-1-4028 [fnd]
Maintainer: Charlotte M. Jones-Todd <c.jonestodd@auckland.ac.nz>

This is a re-admission after prior archival of version 1.0.1 dated 2023-10-24

Diff between stelfi versions 1.0.1 dated 2023-10-24 and 1.0.2 dated 2025-09-15

 stelfi-1.0.1/stelfi/man/stelfi.Rd                   |only
 stelfi-1.0.2/stelfi/DESCRIPTION                     |   30 +-
 stelfi-1.0.2/stelfi/MD5                             |   56 ++--
 stelfi-1.0.2/stelfi/NAMESPACE                       |    3 
 stelfi-1.0.2/stelfi/NEWS.md                         |   15 +
 stelfi-1.0.2/stelfi/R/compile.r                     |    1 
 stelfi-1.0.2/stelfi/R/data.r                        |    2 
 stelfi-1.0.2/stelfi/R/fit_hawkes.r                  |    6 
 stelfi-1.0.2/stelfi/R/fit_lgcp.r                    |    1 
 stelfi-1.0.2/stelfi/R/fit_stelfi.r                  |   40 ++-
 stelfi-1.0.2/stelfi/R/helpers.r                     |   61 ++++
 stelfi-1.0.2/stelfi/R/plots.r                       |   95 ++++++-
 stelfi-1.0.2/stelfi/R/sim_hawkes.r                  |    4 
 stelfi-1.0.2/stelfi/R/stelfi.r                      |    5 
 stelfi-1.0.2/stelfi/build/vignette.rds              |binary
 stelfi-1.0.2/stelfi/inst/CITATION                   |only
 stelfi-1.0.2/stelfi/inst/doc/stelfi.R               |    8 
 stelfi-1.0.2/stelfi/inst/doc/stelfi.Rmd             |   15 -
 stelfi-1.0.2/stelfi/inst/doc/stelfi.html            |  248 ++++++++++++++++++--
 stelfi-1.0.2/stelfi/man/compensator_differences.Rd  |only
 stelfi-1.0.2/stelfi/man/iraq_terrorism.Rd           |    2 
 stelfi-1.0.2/stelfi/man/show_hawkes.Rd              |   18 -
 stelfi-1.0.2/stelfi/man/show_multivariate_hawkes.Rd |only
 stelfi-1.0.2/stelfi/man/sim_hawkes.Rd               |    4 
 stelfi-1.0.2/stelfi/man/stelfi-package.Rd           |only
 stelfi-1.0.2/stelfi/src/Makevars                    |only
 stelfi-1.0.2/stelfi/src/hawkes.h                    |    3 
 stelfi-1.0.2/stelfi/src/spatial_hawkes.h            |  166 +++++++++----
 stelfi-1.0.2/stelfi/src/spde_hawkes.h               |    3 
 stelfi-1.0.2/stelfi/src/stelfi.cpp                  |    9 
 stelfi-1.0.2/stelfi/tests/testthat/test-fits.R      |   13 -
 stelfi-1.0.2/stelfi/vignettes/stelfi.Rmd            |   15 -
 32 files changed, 635 insertions(+), 188 deletions(-)

More information about stelfi at CRAN
Permanent link

Package GGIR updated to version 3.3-0 with previous version 3.2-6 dated 2025-04-25

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre], Jairo H Migueles [aut] , Severine Sabia [ctb], Matthew R Patterson [ctb], Zhou Fang [ctb], Joe Heywood [ctb], Joan Capdevila Pujol [ctb], Lena Kushleyeva [ctb], Mathilde Chen [ctb], Manasa Yerramalla [ctb], Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>

Diff between GGIR versions 3.2-6 dated 2025-04-25 and 3.3-0 dated 2025-09-15

 GGIR-3.2-6/GGIR/R/g.part5.classifyNaps.R                        |only
 GGIR-3.2-6/GGIR/man/g.part5.classifyNaps.Rd                     |only
 GGIR-3.2-6/GGIR/tests/testthat/test_part5_classifyNaps.R        |only
 GGIR-3.3-0/GGIR/DESCRIPTION                                     |   19 
 GGIR-3.3-0/GGIR/MD5                                             |  141 -
 GGIR-3.3-0/GGIR/NAMESPACE                                       |    7 
 GGIR-3.3-0/GGIR/NEWS.md                                         |   72 
 GGIR-3.3-0/GGIR/R/GGIR.R                                        |   68 
 GGIR-3.3-0/GGIR/R/HASPT.R                                       |  187 -
 GGIR-3.3-0/GGIR/R/check_params.R                                |   11 
 GGIR-3.3-0/GGIR/R/createConfigFile.R                            |    9 
 GGIR-3.3-0/GGIR/R/extractID.R                                   |    2 
 GGIR-3.3-0/GGIR/R/g.analyse.perday.R                            |   27 
 GGIR-3.3-0/GGIR/R/g.analyse.perfile.R                           |    6 
 GGIR-3.3-0/GGIR/R/g.getmeta.R                                   |   25 
 GGIR-3.3-0/GGIR/R/g.imputeTimegaps.R                            |   10 
 GGIR-3.3-0/GGIR/R/g.loadlog.R                                   |   29 
 GGIR-3.3-0/GGIR/R/g.part1.R                                     |    3 
 GGIR-3.3-0/GGIR/R/g.part2.R                                     |    6 
 GGIR-3.3-0/GGIR/R/g.part3.R                                     |   30 
 GGIR-3.3-0/GGIR/R/g.part3_alignIndexVectors.R                   |only
 GGIR-3.3-0/GGIR/R/g.part3_correct_guider.R                      |only
 GGIR-3.3-0/GGIR/R/g.part4.R                                     |   61 
 GGIR-3.3-0/GGIR/R/g.part5.R                                     |   71 
 GGIR-3.3-0/GGIR/R/g.part5.definedays.R                          |   13 
 GGIR-3.3-0/GGIR/R/g.part5.savetimeseries.R                      |    4 
 GGIR-3.3-0/GGIR/R/g.part6.R                                     |    5 
 GGIR-3.3-0/GGIR/R/g.report.part4.R                              |    7 
 GGIR-3.3-0/GGIR/R/g.sib.det.R                                   |   74 
 GGIR-3.3-0/GGIR/R/g.sib.sum.R                                   |    6 
 GGIR-3.3-0/GGIR/R/g.sibreport.R                                 |    9 
 GGIR-3.3-0/GGIR/R/load_params.R                                 |   16 
 GGIR-3.3-0/GGIR/R/read.myacc.csv.R                              |    9 
 GGIR-3.3-0/GGIR/R/visualReport.R                                | 1245 +++++-----
 GGIR-3.3-0/GGIR/build/vignette.rds                              |binary
 GGIR-3.3-0/GGIR/inst/CITATION                                   |  118 
 GGIR-3.3-0/GGIR/inst/doc/CutPoints.Rmd                          |  295 +-
 GGIR-3.3-0/GGIR/inst/doc/CutPoints.html                         |  966 ++++---
 GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.R                     |   62 
 GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.Rmd                   |   62 
 GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.html                  |   62 
 GGIR-3.3-0/GGIR/inst/doc/GGIR.Rmd                               |   57 
 GGIR-3.3-0/GGIR/inst/doc/GGIR.html                              |   55 
 GGIR-3.3-0/GGIR/inst/doc/GGIRParameters.Rmd                     |   20 
 GGIR-3.3-0/GGIR/inst/doc/GGIRParameters.html                    |  216 +
 GGIR-3.3-0/GGIR/inst/doc/GGIRoutput.Rmd                         |   35 
 GGIR-3.3-0/GGIR/inst/doc/GGIRoutput.html                        |  124 
 GGIR-3.3-0/GGIR/inst/doc/NapDetection.Rmd                       |only
 GGIR-3.3-0/GGIR/inst/doc/NapDetection.html                      |only
 GGIR-3.3-0/GGIR/inst/doc/readmyacccsv.Rmd                       |    2 
 GGIR-3.3-0/GGIR/inst/doc/readmyacccsv.html                      |    3 
 GGIR-3.3-0/GGIR/man/GGIR-package.Rd                             |    4 
 GGIR-3.3-0/GGIR/man/GGIR.Rd                                     |  132 -
 GGIR-3.3-0/GGIR/man/HASPT.Rd                                    |   26 
 GGIR-3.3-0/GGIR/man/g.loadlog.Rd                                |    7 
 GGIR-3.3-0/GGIR/man/g.part3_alignIndexVectors.Rd                |only
 GGIR-3.3-0/GGIR/man/g.part3_correct_guider.Rd                   |only
 GGIR-3.3-0/GGIR/man/g.part5.definedays.Rd                       |    5 
 GGIR-3.3-0/GGIR/man/visualReport.Rd                             |   15 
 GGIR-3.3-0/GGIR/tests/testthat/test_HASPT.R                     |  157 -
 GGIR-3.3-0/GGIR/tests/testthat/test_chainof5parts.R             |   28 
 GGIR-3.3-0/GGIR/tests/testthat/test_extractID.R                 |    4 
 GGIR-3.3-0/GGIR/tests/testthat/test_g.part3_alignIndexVectors.R |only
 GGIR-3.3-0/GGIR/tests/testthat/test_lightPart5.R                |    5 
 GGIR-3.3-0/GGIR/tests/testthat/test_load_check_params.R         |    2 
 GGIR-3.3-0/GGIR/tests/testthat/test_part1_with_allmetrics.R     |   32 
 GGIR-3.3-0/GGIR/tests/testthat/test_part2_short_recordings.R    |only
 GGIR-3.3-0/GGIR/tests/testthat/test_part3_correct_guider.R      |only
 GGIR-3.3-0/GGIR/tests/testthat/test_part5_qwindow.R             |   47 
 GGIR-3.3-0/GGIR/tests/testthat/test_recordingEndSleepHour.R     |    2 
 GGIR-3.3-0/GGIR/tests/testthat/test_splitRecords.R              |    4 
 GGIR-3.3-0/GGIR/vignettes/CutPoints.Rmd                         |  295 +-
 GGIR-3.3-0/GGIR/vignettes/ExternalFunction.Rmd                  |   62 
 GGIR-3.3-0/GGIR/vignettes/GGIR.Rmd                              |   57 
 GGIR-3.3-0/GGIR/vignettes/GGIRParameters.Rmd                    |   20 
 GGIR-3.3-0/GGIR/vignettes/GGIRoutput.Rmd                        |   35 
 GGIR-3.3-0/GGIR/vignettes/NapDetection.Rmd                      |only
 GGIR-3.3-0/GGIR/vignettes/readmyacccsv.Rmd                      |    2 
 78 files changed, 2893 insertions(+), 2297 deletions(-)

More information about GGIR at CRAN
Permanent link

Package crew.cluster updated to version 0.4.0 with previous version 0.3.8 dated 2025-06-09

Title: Crew Launcher Plugins for Traditional High-Performance Computing Clusters
Description: In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'crew.cluster' package extends the 'mirai'-powered 'crew' package with worker launcher plugins for traditional high-performance computing systems. Inspiration also comes from packages 'mirai' by Gao (2023) <https://github.com/r-lib/mirai>, 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischl, and Surmann (2017). <doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] , Michael Gilbert Levin [aut] , Brendan Furneaux [aut] , Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>

Diff between crew.cluster versions 0.3.8 dated 2025-06-09 and 0.4.0 dated 2025-09-15

 crew.cluster-0.3.8/crew.cluster/R/utils_names.R                             |only
 crew.cluster-0.3.8/crew.cluster/tests/testthat/test-utils_names.R           |only
 crew.cluster-0.4.0/crew.cluster/DESCRIPTION                                 |   12 -
 crew.cluster-0.4.0/crew.cluster/MD5                                         |  116 ++++------
 crew.cluster-0.4.0/crew.cluster/NAMESPACE                                   |    1 
 crew.cluster-0.4.0/crew.cluster/NEWS.md                                     |    7 
 crew.cluster-0.4.0/crew.cluster/R/crew_controller_lsf.R                     |    4 
 crew.cluster-0.4.0/crew.cluster/R/crew_controller_pbs.R                     |    4 
 crew.cluster-0.4.0/crew.cluster/R/crew_controller_sge.R                     |    4 
 crew.cluster-0.4.0/crew.cluster/R/crew_controller_slurm.R                   |   10 
 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_cluster.R                   |   61 +----
 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_lsf.R                       |   10 
 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_pbs.R                       |    6 
 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_sge.R                       |    6 
 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_slurm.R                     |   20 -
 crew.cluster-0.4.0/crew.cluster/R/crew_monitor_slurm.R                      |   15 +
 crew.cluster-0.4.0/crew.cluster/R/crew_options_cluster.R                    |   26 +-
 crew.cluster-0.4.0/crew.cluster/R/crew_options_lsf.R                        |   14 +
 crew.cluster-0.4.0/crew.cluster/R/crew_options_pbs.R                        |   14 +
 crew.cluster-0.4.0/crew.cluster/R/crew_options_sge.R                        |   14 +
 crew.cluster-0.4.0/crew.cluster/R/crew_options_slurm.R                      |   14 +
 crew.cluster-0.4.0/crew.cluster/R/crew_package.R                            |    1 
 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_cluster.Rd          |   53 ----
 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_lsf.Rd              |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_pbs.Rd              |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_sge.Rd              |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_slurm.Rd            |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_controller_lsf.Rd                  |   14 -
 crew.cluster-0.4.0/crew.cluster/man/crew_controller_pbs.Rd                  |   14 -
 crew.cluster-0.4.0/crew.cluster/man/crew_controller_sge.Rd                  |   14 -
 crew.cluster-0.4.0/crew.cluster/man/crew_controller_slurm.Rd                |   22 -
 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_cluster.Rd                |    9 
 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_lsf.Rd                    |    9 
 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_pbs.Rd                    |    9 
 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_sge.Rd                    |    9 
 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_slurm.Rd                  |   16 -
 crew.cluster-0.4.0/crew.cluster/man/crew_options_cluster.Rd                 |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_options_lsf.Rd                     |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_options_pbs.Rd                     |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_options_sge.Rd                     |   12 -
 crew.cluster-0.4.0/crew.cluster/man/crew_options_slurm.Rd                   |   12 -
 crew.cluster-0.4.0/crew.cluster/tests/pbs/minimal.R                         |    5 
 crew.cluster-0.4.0/crew.cluster/tests/sge/minimal.R                         |    5 
 crew.cluster-0.4.0/crew.cluster/tests/sge/monitor.R                         |    6 
 crew.cluster-0.4.0/crew.cluster/tests/slurm/minimal.R                       |    5 
 crew.cluster-0.4.0/crew.cluster/tests/slurm/monitor.R                       |    6 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_lsf.R   |    8 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_pbs.R   |    3 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_sge.R   |    3 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_slurm.R |    9 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_cluster.R |   62 +----
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_lsf.R     |   19 -
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_pbs.R     |    9 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_sge.R     |    9 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_slurm.R   |   17 -
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_cluster.R  |    1 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_lsf.R      |    2 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_pbs.R      |    2 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_sge.R      |    2 
 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_slurm.R    |    2 
 60 files changed, 362 insertions(+), 449 deletions(-)

More information about crew.cluster at CRAN
Permanent link

Package crew.aws.batch updated to version 0.1.0 with previous version 0.0.11 dated 2025-06-09

Title: A Crew Launcher Plugin for AWS Batch
Description: In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'crew.aws.batch' package extends the 'mirai'-powered 'crew' package with a worker launcher plugin for AWS Batch. Inspiration also comes from packages 'mirai' by Gao (2023) <https://github.com/r-lib/mirai>, 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischl, and Surmann (2017). <doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] , Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>

Diff between crew.aws.batch versions 0.0.11 dated 2025-06-09 and 0.1.0 dated 2025-09-15

 crew.aws.batch-0.0.11/crew.aws.batch/man/crew_launcher_aws_batch_terminate.Rd       |only
 crew.aws.batch-0.1.0/crew.aws.batch/DESCRIPTION                                     |   10 -
 crew.aws.batch-0.1.0/crew.aws.batch/MD5                                             |   29 +--
 crew.aws.batch-0.1.0/crew.aws.batch/NAMESPACE                                       |    1 
 crew.aws.batch-0.1.0/crew.aws.batch/NEWS.md                                         |   10 +
 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_controller_aws_batch.R                   |    5 
 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_definition_aws_batch.R                   |    8 
 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_launcher_aws_batch.R                     |   90 +++-------
 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_monitor_aws_batch.R                      |   25 +-
 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_options_aws_batch.R                      |   15 -
 crew.aws.batch-0.1.0/crew.aws.batch/man/crew_class_launcher_aws_batch.Rd            |   42 ----
 crew.aws.batch-0.1.0/crew.aws.batch/man/crew_controller_aws_batch.Rd                |   21 --
 crew.aws.batch-0.1.0/crew.aws.batch/man/crew_launcher_aws_batch.Rd                  |   18 --
 crew.aws.batch-0.1.0/crew.aws.batch/tests/controller/minimal.R                      |    4 
 crew.aws.batch-0.1.0/crew.aws.batch/tests/testthat/test-crew_controller_aws_batch.R |    7 
 crew.aws.batch-0.1.0/crew.aws.batch/tests/testthat/test-crew_launcher_aws_batch.R   |    5 
 16 files changed, 116 insertions(+), 174 deletions(-)

More information about crew.aws.batch at CRAN
Permanent link

Package boostmath updated to version 1.2.0 with previous version 1.1.0 dated 2025-09-04

Title: 'R' Bindings for the 'Boost' Math Functions
Description: 'R' bindings for the various functions and statistical distributions provided by the 'Boost' Math library <https://www.boost.org/doc/libs/latest/libs/math/doc/html/index.html>.
Author: Andrew R. Johnson [aut, cre]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>

Diff between boostmath versions 1.1.0 dated 2025-09-04 and 1.2.0 dated 2025-09-15

 boostmath-1.1.0/boostmath/src/interpolators                                              |only
 boostmath-1.1.0/boostmath/src/rootfinding_and_minimisation/cubic_roots.cpp               |only
 boostmath-1.1.0/boostmath/src/rootfinding_and_minimisation/quartic_roots.cpp             |only
 boostmath-1.1.0/boostmath/src/statistics                                                 |only
 boostmath-1.2.0/boostmath/DESCRIPTION                                                    |    8 
 boostmath-1.2.0/boostmath/MD5                                                            |  121 +---
 boostmath-1.2.0/boostmath/NAMESPACE                                                      |    7 
 boostmath-1.2.0/boostmath/NEWS.md                                                        |    4 
 boostmath-1.2.0/boostmath/R/filters.R                                                    |only
 boostmath-1.2.0/boostmath/R/holtsmark_distribution.R                                     |   13 
 boostmath-1.2.0/boostmath/R/interpolators.R                                              |   80 +-
 boostmath-1.2.0/boostmath/R/landau_distribution.R                                        |   13 
 boostmath-1.2.0/boostmath/R/mapairy_distribution.R                                       |   13 
 boostmath-1.2.0/boostmath/R/non_central_f_distribution.R                                 |only
 boostmath-1.2.0/boostmath/R/saspoint5_distribution.R                                     |   13 
 boostmath-1.2.0/boostmath/build/vignette.rds                                             |binary
 boostmath-1.2.0/boostmath/inst/doc/filters.R                                             |only
 boostmath-1.2.0/boostmath/inst/doc/filters.Rmd                                           |only
 boostmath-1.2.0/boostmath/inst/doc/filters.html                                          |only
 boostmath-1.2.0/boostmath/inst/doc/interpolation.R                                       |   26 
 boostmath-1.2.0/boostmath/inst/doc/interpolation.Rmd                                     |   28 
 boostmath-1.2.0/boostmath/inst/doc/interpolation.html                                    |   32 -
 boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.R                           |only
 boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.Rmd                         |only
 boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.html                        |only
 boostmath-1.2.0/boostmath/man/barycentric_rational.Rd                                    |    4 
 boostmath-1.2.0/boostmath/man/bezier_polynomial.Rd                                       |    4 
 boostmath-1.2.0/boostmath/man/bilinear_uniform.Rd                                        |    4 
 boostmath-1.2.0/boostmath/man/cardinal_cubic_b_spline.Rd                                 |    4 
 boostmath-1.2.0/boostmath/man/cardinal_cubic_hermite.Rd                                  |    4 
 boostmath-1.2.0/boostmath/man/cardinal_quadratic_b_spline.Rd                             |    4 
 boostmath-1.2.0/boostmath/man/cardinal_quintic_b_spline.Rd                               |    4 
 boostmath-1.2.0/boostmath/man/cardinal_quintic_hermite.Rd                                |    4 
 boostmath-1.2.0/boostmath/man/catmull_rom.Rd                                             |    4 
 boostmath-1.2.0/boostmath/man/cubic_hermite.Rd                                           |    4 
 boostmath-1.2.0/boostmath/man/filters.Rd                                                 |only
 boostmath-1.2.0/boostmath/man/holtsmark_distribution.Rd                                  |   13 
 boostmath-1.2.0/boostmath/man/landau_distribution.Rd                                     |   13 
 boostmath-1.2.0/boostmath/man/makima.Rd                                                  |    4 
 boostmath-1.2.0/boostmath/man/mapairy_distribution.Rd                                    |   13 
 boostmath-1.2.0/boostmath/man/non_central_f_distribution.Rd                              |only
 boostmath-1.2.0/boostmath/man/pchip.Rd                                                   |    4 
 boostmath-1.2.0/boostmath/man/quintic_hermite.Rd                                         |    4 
 boostmath-1.2.0/boostmath/man/saspoint5_distribution.Rd                                  |   13 
 boostmath-1.2.0/boostmath/src/Makevars                                                   |    1 
 boostmath-1.2.0/boostmath/src/boostmath/macros.hpp                                       |  282 ++++++++--
 boostmath-1.2.0/boostmath/src/boostmath/sexp.hpp                                         |  130 ----
 boostmath-1.2.0/boostmath/src/boostmath/type_traits.hpp                                  |only
 boostmath-1.2.0/boostmath/src/filters.cpp                                                |only
 boostmath-1.2.0/boostmath/src/init.cpp                                                   |    8 
 boostmath-1.2.0/boostmath/src/interpolators.cpp                                          |   98 +++
 boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation.cpp                           |    3 
 boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation/polynomial_roots.cpp          |only
 boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation/with_derivatives.cpp          |   12 
 boostmath-1.2.0/boostmath/src/special_functions/factorials_and_binomial_coefficients.cpp |   20 
 boostmath-1.2.0/boostmath/src/special_functions/number_series.cpp                        |   27 
 boostmath-1.2.0/boostmath/src/statistics.cpp                                             |   72 ++
 boostmath-1.2.0/boostmath/src/vector_functionals.cpp                                     |  108 ---
 boostmath-1.2.0/boostmath/vignettes/filters.Rmd                                          |only
 boostmath-1.2.0/boostmath/vignettes/interpolation.Rmd                                    |   28 
 boostmath-1.2.0/boostmath/vignettes/statistical-distributions.Rmd                        |only
 61 files changed, 683 insertions(+), 568 deletions(-)

More information about boostmath at CRAN
Permanent link

Package BioStatR updated to version 4.1.1 with previous version 4.1.0 dated 2025-09-13

Title: Initiation à La Statistique Avec R
Description: Datasets and functions for the book "Initiation à la Statistique avec R", F. Bertrand and M. Maumy-Bertrand (2022, ISBN:978-2100782826 Dunod, fourth edition).
Author: Frederic Bertrand [cre, aut] , Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>

Diff between BioStatR versions 4.1.0 dated 2025-09-13 and 4.1.1 dated 2025-09-15

 DESCRIPTION                           |   10 +++++-----
 MD5                                   |    8 ++++----
 NEWS.md                               |    4 ++++
 tests/testthat/Rplots.pdf             |binary
 tests/testthat/test_binom_ci_values.R |   18 +++++++++++++++++-
 5 files changed, 30 insertions(+), 10 deletions(-)

More information about BioStatR at CRAN
Permanent link

Package hdtg (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-05-20 0.2.1

Permanent link
Package bullseye updated to version 1.0.1 with previous version 1.0.0 dated 2025-05-09

Title: Visualising Multiple Pairwise Variable Correlations and Other Scores
Description: We provide a tidy data structure and visualisations for multiple or grouped variable correlations, general association measures scagnostics and other pairwise scores suitable for numerical, ordinal and nominal variables. Supported measures include distance correlation, maximal information, ace correlation, Kendall's tau, and polychoric correlation.
Author: Amit Chinwan [aut], Catherine Hurley [aut, cre]
Maintainer: Catherine Hurley <catherine.hurley@mu.ie>

Diff between bullseye versions 1.0.0 dated 2025-05-09 and 1.0.1 dated 2025-09-15

 DESCRIPTION                 |    8 ++++----
 MD5                         |   22 ++++++++++++----------
 NAMESPACE                   |    2 ++
 NEWS.md                     |    5 +++++
 R/bullseye-package.R        |    2 ++
 R/plot_pairwise.R           |   43 ++++++++++++++++++++++++++++---------------
 README.md                   |    1 +
 inst/doc/integrating.html   |    8 ++++----
 inst/doc/vis_pairwise.html  |   30 +++++++++++++++---------------
 man/figures                 |only
 man/plot_pairwise.Rd        |    3 +++
 man/plot_pairwise_linear.Rd |    2 +-
 12 files changed, 77 insertions(+), 49 deletions(-)

More information about bullseye at CRAN
Permanent link

New package waou with initial version 0.1.0
Package: waou
Title: Weighting All of Us
Version: 0.1.0
Description: Utilities for using a probability sample to reweight prevalence estimates calculated from the All of Us research program. Weighted estimates will still not be representative of the general U.S. population. However, they will provide an early indication for how unweighted estimates may be biased by the sampling bias in the All of Us sample.
License: AGPL (>= 3)
Encoding: UTF-8
Suggests: testthat (>= 3.0.0)
Imports: glmnet, dplyr, stringr, stats, glue, mice, nonprobsvy, survey, ggplot2, purrr
Depends: R (>= 3.5)
LazyData: true
NeedsCompilation: no
Packaged: 2025-09-10 20:51:53 UTC; mbrannock
Author: Daniel Brannock [aut, cre] , Mahmoud Elkasabi [aut]
Maintainer: Daniel Brannock <mbrannock@rti.org>
Repository: CRAN
Date/Publication: 2025-09-15 09:10:02 UTC

More information about waou at CRAN
Permanent link

New package twomodeclusteringGA with initial version 1.0.0
Package: twomodeclusteringGA
Title: Genetic Algorithm Based Two-Mode Clustering
Version: 1.0.0
Description: Implements two-mode clustering (biclustering) using genetic algorithms. The method was first introduced in Hageman et al. (2008) <doi:10.1007/s11306-008-0105-7>. The package provides tools for fitting, visualization, and validation of two-mode cluster structures in data matrices.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 3.6)
Imports: GA, stats, utils, ggplot2
URL: https://github.com/joshageman/twomodeclusteringGA
BugReports: https://github.com/joshageman/twomodeclusteringGA/issues
NeedsCompilation: no
Packaged: 2025-09-10 19:08:45 UTC; hagem011
Author: Jos Hageman [aut, cre]
Maintainer: Jos Hageman <jos.hageman@wur.nl>
Repository: CRAN
Date/Publication: 2025-09-15 09:10:07 UTC

More information about twomodeclusteringGA at CRAN
Permanent link

Package SuperpixelImageSegmentation updated to version 1.0.6 with previous version 1.0.5 dated 2022-02-06

Title: Superpixel Image Segmentation
Description: Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.
Author: Lampros Mouselimis [aut, cre]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between SuperpixelImageSegmentation versions 1.0.5 dated 2022-02-06 and 1.0.6 dated 2025-09-15

 DESCRIPTION                       |   15 ++++++++-------
 MD5                               |   14 +++++++-------
 NEWS.md                           |    7 +++++++
 README.md                         |    4 ++--
 man/Image_Segmentation.Rd         |   30 +++++++++++++++---------------
 src/Makevars                      |    4 +---
 src/Makevars.win                  |    6 ++----
 src/superPx_AP_Kmeans_Segment.cpp |    1 -
 8 files changed, 42 insertions(+), 39 deletions(-)

More information about SuperpixelImageSegmentation at CRAN
Permanent link

Package pathling updated to version 8.0.2 with previous version 7.0.0 dated 2024-05-21

Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre], Piotr Szul [aut], John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>

Diff between pathling versions 7.0.0 dated 2024-05-21 and 8.0.2 dated 2025-09-15

 pathling-7.0.0/pathling/R/query.R                        |only
 pathling-7.0.0/pathling/man/ImportMode.Rd                |only
 pathling-7.0.0/pathling/man/ds_aggregate.Rd              |only
 pathling-7.0.0/pathling/man/ds_extract.Rd                |only
 pathling-8.0.2/pathling/DESCRIPTION                      |   20 
 pathling-8.0.2/pathling/MD5                              |   87 +--
 pathling-8.0.2/pathling/NAMESPACE                        |   11 
 pathling-8.0.2/pathling/R/context.R                      |    9 
 pathling-8.0.2/pathling/R/data.R                         |    2 
 pathling-8.0.2/pathling/R/datasource.R                   |  336 +++++++++++----
 pathling-8.0.2/pathling/R/dependencies.R                 |    2 
 pathling-8.0.2/pathling/R/encoding.R                     |    8 
 pathling-8.0.2/pathling/R/etc.R                          |   12 
 pathling-8.0.2/pathling/R/fhir.R                         |    9 
 pathling-8.0.2/pathling/R/functions.R                    |   23 -
 pathling-8.0.2/pathling/R/rexport-sparklyr.R             |    2 
 pathling-8.0.2/pathling/R/udfs.R                         |   45 --
 pathling-8.0.2/pathling/R/utils.R                        |    2 
 pathling-8.0.2/pathling/R/view.R                         |only
 pathling-8.0.2/pathling/README.md                        |    8 
 pathling-8.0.2/pathling/man/SaveMode.Rd                  |    3 
 pathling-8.0.2/pathling/man/ds_read.Rd                   |    6 
 pathling-8.0.2/pathling/man/ds_view.Rd                   |only
 pathling-8.0.2/pathling/man/ds_write_delta.Rd            |   12 
 pathling-8.0.2/pathling/man/ds_write_ndjson.Rd           |    8 
 pathling-8.0.2/pathling/man/ds_write_parquet.Rd          |    4 
 pathling-8.0.2/pathling/man/ds_write_tables.Rd           |   12 
 pathling-8.0.2/pathling/man/pathling_connect.Rd          |    7 
 pathling-8.0.2/pathling/man/pathling_encode.Rd           |    2 
 pathling-8.0.2/pathling/man/pathling_encode_bundle.Rd    |    2 
 pathling-8.0.2/pathling/man/pathling_example_resource.Rd |    6 
 pathling-8.0.2/pathling/man/pathling_read_bulk.Rd        |only
 pathling-8.0.2/pathling/man/pathling_read_bundles.Rd     |    9 
 pathling-8.0.2/pathling/man/pathling_read_datasets.Rd    |    9 
 pathling-8.0.2/pathling/man/pathling_read_delta.Rd       |    9 
 pathling-8.0.2/pathling/man/pathling_read_ndjson.Rd      |    9 
 pathling-8.0.2/pathling/man/pathling_read_parquet.Rd     |    9 
 pathling-8.0.2/pathling/man/pathling_read_tables.Rd      |   10 
 pathling-8.0.2/pathling/man/tx_designation.Rd            |    9 
 pathling-8.0.2/pathling/man/tx_display.Rd                |    8 
 pathling-8.0.2/pathling/man/tx_property_of.Rd            |    8 
 pathling-8.0.2/pathling/man/tx_subsumed_by.Rd            |    2 
 pathling-8.0.2/pathling/man/tx_subsumes.Rd               |    8 
 pathling-8.0.2/pathling/man/tx_to_coding.Rd              |    7 
 pathling-8.0.2/pathling/man/tx_to_ecl_value_set.Rd       |    4 
 pathling-8.0.2/pathling/man/tx_to_loinc_coding.Rd        |    7 
 pathling-8.0.2/pathling/man/tx_to_snomed_coding.Rd       |    7 
 pathling-8.0.2/pathling/man/tx_translate.Rd              |    8 
 48 files changed, 449 insertions(+), 312 deletions(-)

More information about pathling at CRAN
Permanent link

Package niarules updated to version 0.3.1 with previous version 0.3.0 dated 2025-09-08

Title: Numerical Association Rule Mining using Population-Based Nature-Inspired Algorithms
Description: Framework is devoted to mining numerical association rules through the utilization of nature-inspired algorithms for optimization. Drawing inspiration from the 'NiaARM' 'Python' and the 'NiaARM' 'Julia' packages, this repository introduces the capability to perform numerical association rule mining in the R programming language. Fister Jr., Iglesias, Galvez, Del Ser, Osaba and Fister (2018) <doi:10.1007/978-3-030-03493-1_9>.
Author: Iztok Jr. Fister [aut, cre, cph] , Gerlinde Emsenhuber [aut] , Jan Hendrik Pluemer [aut]
Maintainer: Iztok Jr. Fister <iztok@iztok.space>

Diff between niarules versions 0.3.0 dated 2025-09-08 and 0.3.1 dated 2025-09-15

 DESCRIPTION                                            |    6 
 MD5                                                    |   33 
 NAMESPACE                                              |    7 
 NEWS.md                                                |only
 R/build_coral_plots.R                                  |  119 ++
 R/coral_plot_visualization.R                           |  959 +++++++++++++++++
 R/coral_theme.R                                        |only
 R/metric_domains.R                                     |only
 R/parse_rules.R                                        |   67 +
 README.md                                              |    2 
 man/build_coral_plots.Rd                               |   20 
 man/coral_get_theme.Rd                                 |only
 man/coral_list_themes.Rd                               |only
 man/figures/coral-plot-example.png                     |binary
 man/metric_domains.Rd                                  |only
 man/render_coral_rgl_experimental.Rd                   |only
 src/interval_parser.h                                  |   16 
 src/parse_rules.cpp                                    |    2 
 tests/testthat/test-build-coral-layout.R               |   33 
 tests/testthat/test-metric-domains.R                   |only
 tests/testthat/test-parse-rules.R                      |   36 
 tests/testthat/test-render-coral-layout-experimental.R |only
 22 files changed, 1268 insertions(+), 32 deletions(-)

More information about niarules at CRAN
Permanent link

New package ISPYARDSWinProbabilityGSDesign with initial version 0.1.0
Package: ISPYARDSWinProbabilityGSDesign
Title: Trial Design in Respiratory Disease Based on the Win Probability
Version: 0.1.0
Description: Provides analysis results and trial simulation functions for the I-SPY Acute Respiratory Disease Syndrome trial based on composite ranked outcomes. The composite ranked outcome is a hierarchical outcome where trial participants are ranked first by 28 day mortality, then ventilator days, then by advanced respiratory support days. A Bayesian win probability approach is used for analysis. Trial design options include group sequential looks for safety, superiority, futility, and adjustment of randomization probabilities.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: DFBA
NeedsCompilation: no
Packaged: 2025-09-10 21:05:33 UTC; a.chapple
Author: Andrew G Chapple [aut, cre], Andrew Chapple [ctb], Peter Norwood [ctb], Martin Eklund [ctb], Derek Russell [ctb], Phil Beineke [ctb], Quantum Leap Healthcare Collaborative [ctb, cph]
Maintainer: Andrew G Chapple <a.chapple@qlhc.org>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2025-09-15 09:10:25 UTC

More information about ISPYARDSWinProbabilityGSDesign at CRAN
Permanent link

New package broadcast with initial version 0.1.3
Package: broadcast
Title: Broadcasted Array Operations Like 'NumPy'
Version: 0.1.3
Description: Implements efficient 'NumPy'-like broadcasted operations for atomic and recursive arrays. Besides linking to 'Rcpp', 'broadcast' does not use any external libraries in any way; 'broadcast' was essentially made from scratch and can be installed out-of-the-box. The implementations available in 'broadcast' include, but are not limited to, the following. 1) Broadcasted element-wise operations on any 2 arrays; they support a large set of relational, arithmetic, Boolean, string, and bit-wise operations. 2) A faster, more memory efficient, and broadcasted abind-like function, for binding arrays along an arbitrary dimension. 3) Broadcasted ifelse-like, and apply-like functions. 4) Casting functions, that cast subset-groups of an array to a new dimension, cast nested lists to dimensional lists, and vice-versa. 5) A few linear algebra functions for statistics. The functions in the 'broadcast' package strive to minimize computation time and memory usage (which is not just good for efficient compu [...truncated...]
License: MPL-2.0
Encoding: UTF-8
LinkingTo: Rcpp
Depends: R (>= 4.2.0)
Imports: Rcpp (>= 1.0.14), methods
Suggests: tinytest, abind, roxygen2
URL: https://github.com/tony-aw/broadcast, https://tony-aw.github.io/broadcast/
BugReports: https://github.com/tony-aw/broadcast/issues/
Language: en-gb
NeedsCompilation: yes
Packaged: 2025-09-10 18:32:06 UTC; Tony
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Repository: CRAN
Date/Publication: 2025-09-15 09:10:18 UTC

More information about broadcast at CRAN
Permanent link

New package BLMEngineInR with initial version 0.1.7
Package: BLMEngineInR
Version: 0.1.7
Date: 2025-09-03
Title: Biotic Ligand Model Engine
Description: A chemical speciation and toxicity prediction model for the toxicity of metals to aquatic organisms. The Biotic Ligand Model (BLM) engine was originally programmed in 'PowerBasic' by Robert Santore and others. The main way the BLM can be used is to predict the toxicity of a metal to an organism with a known sensitivity (i.e., it is known how much of that metal must accumulate on that organism's biotic ligand to cause a physiological effect in a certain percentage of the population, such as a 20% loss in reproduction or a 50% mortality rate). The second way the BLM can be used is to estimate the chemical speciation of the metal and other constituents in water, including estimating the amount of metal accumulated to an organism's biotic ligand during a toxicity test. In the first application of the BLM, the amount of metal associated with a toxicity endpoint, or regulatory limit will be predicted, while in the second application, the amount of metal is known and the portions of that meta [...truncated...]
License: Apache License (>= 2)
URL: https://www.windwardenv.com/biotic-ligand-model/
Encoding: UTF-8
Language: en-US
LazyData: true
Imports: methods, openxlsx, Rcpp (>= 1.0.10), utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat (>= 3.0.0), withr
Depends: R (>= 3.5)
NeedsCompilation: yes
Packaged: 2025-09-10 21:05:25 UTC; kellyc
Author: Robert Santore [aut], Kelly Croteau [aut, cre]
Maintainer: Kelly Croteau <kellyc@windwardenv.com>
Repository: CRAN
Date/Publication: 2025-09-15 09:10:29 UTC

More information about BLMEngineInR at CRAN
Permanent link

New package USE with initial version 0.1.6
Package: USE
Title: Uniform Sampling of the Environmental Space
Version: 0.1.6
Description: Provides functions for uniform sampling of the environmental space, designed to assist species distribution modellers in gathering ecologically relevant pseudo-absence data. The method ensures balanced representation of environmental conditions and helps reduce sampling bias in model calibration. Based on the framework described by Da Re et al. (2023) <doi:10.1111/2041-210X.14209>.
Depends: R (>= 3.6.0)
Imports: sf, parallel, terra, ks, ggplot2, cowplot
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
URL: https://danddr.github.io/USE/, https://github.com/danddr/USE
BugReports: https://github.com/danddr/USE/issues
Suggests: rmarkdown, knitr, tidyterra
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-10 12:15:13 UTC; dared
Author: Daniele Da Re [aut, cre] , Enrico Tordoni [aut] , Manuele Bazzichetto [aut]
Maintainer: Daniele Da Re <dare.daniele@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-15 08:10:02 UTC

More information about USE at CRAN
Permanent link

New package tdPRC with initial version 1.0.0
Package: tdPRC
Title: Time-Dependent Precision-Recall Curve Estimation for Right-Censored Data
Version: 1.0.0
Description: This contains functions that can be used to estimate the time-dependent precision-recall curve (PRC) and the corresponding area under the PRC for right-censored survival data. It also compute time-dependent ROC curve and its corresponding area under the ROC curve (AUC). See Beyene, Chen and Kifle (2024) <doi:10.1002/bimj.202300135>.
License: GPL (>= 2)
Depends: R(>= 4.0)
Imports: survidm, graphics, stats
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2025-09-10 14:19:59 UTC; m2kas
Author: Kassu Mehari Beyene [aut, cre], Ding-Geng Chen [ctb], Yehenew Getachew Kifle [ctb]
Maintainer: Kassu Mehari Beyene <m2kassu@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-15 09:00:02 UTC

More information about tdPRC at CRAN
Permanent link

New package SEQTaRget with initial version 0.13.1
Package: SEQTaRget
Title: Sequential Trial Emulation
Version: 0.13.1
Description: Implementation of sequential trial emulation for the analysis of observational databases. The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies, can be used to estimate observational analogs of intention-to-treat and per-protocol effects, and can adjust for potential selection bias induced by losses-to-follow-up. (Paper to come).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: rmarkdown, testthat (>= 3.0.0)
Imports: data.table, doFuture, doRNG, fastglm, future, future.apply, ggplot2, knitr, methods, stringr, survival
Depends: R (>= 4.1)
URL: https://causalinference.github.io/SEQuential/
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-10 15:45:45 UTC; ryo766
Author: Ryan O'Dea [aut, cre] , Alejandro Szmulewicz [aut] , Miguel Hernan [aut] , The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryanodea@hsph.harvard.edu>
Repository: CRAN
Date/Publication: 2025-09-15 08:40:02 UTC

More information about SEQTaRget at CRAN
Permanent link

New package ronfig with initial version 0.0.2
Package: ronfig
Title: Load Configuration Values
Version: 0.0.2
Description: A simple approach to configuring R projects with different parameter values. Configurations are specified using a reduced subset of base R and parsed accordingly.
URL: https://timtaylor.codeberg.page/ronfig/
BugReports: https://codeberg.org/TimTaylor/ronfig/issues
License: GPL-2 | GPL-3
Encoding: UTF-8
Imports: cli, utils
Suggests: litedown, testthat (>= 3.0.0)
VignetteBuilder: litedown
NeedsCompilation: no
Packaged: 2025-09-10 09:44:53 UTC; tim
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Repository: CRAN
Date/Publication: 2025-09-15 08:30:02 UTC

More information about ronfig at CRAN
Permanent link

New package rdcmchecks with initial version 0.1.0
Package: rdcmchecks
Title: Common Argument Checks for 'r-dcm' Packages
Version: 0.1.0
Description: Many packages in the 'r-dcm' family take similar arguments, which are checked for expected structures and values. Rather than duplicating code across several packages, commonly used check functions are included here. This package can then be imported to access the check functions in other packages.
License: MIT + file LICENSE
URL: https://rdcmchecks.r-dcm.org, https://github.com/r-dcm/rdcmchecks
BugReports: https://github.com/r-dcm/rdcmchecks/issues
Depends: R (>= 4.1.0)
Imports: cli, dplyr, readr, rlang, tibble, tidyr
Suggests: dcmdata, spelling, testthat (>= 3.0.0)
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2025-09-10 15:34:31 UTC; jakethompson
Author: W. Jake Thompson [aut, cre] , University of Kansas [cph], Institute of Education Sciences [fnd], Accessible Teaching, Learning, and Assessment Systems [fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-15 08:30:06 UTC

More information about rdcmchecks at CRAN
Permanent link

New package polarisR with initial version 0.1.3
Package: polarisR
Title: Non-Linear Dimensionality Reduction Visualization Tool
Version: 0.1.3
Description: A 'shiny' application for visualizing high-dimensional data using non-linear dimensionality reduction (NLDR) techniques such as t-SNE and UMAP. It provides an interactive platform to explore high-dimensional datasets, diagnose the quality of the embeddings using the 'quollr' package, and compare different NLDR methods.
License: MIT + file LICENSE
URL: https://github.com/Divendra2006/polarisR, https://divendra2006.github.io/polarisR/
BugReports: https://github.com/Divendra2006/polarisR/issues
Depends: R (>= 4.1.0)
Imports: bslib, crosstalk, detourr, dplyr, DT, FNN, future, ggplot2, magrittr, plotly, quollr, Rtsne, scales, shiny, stats, tools, tourr, umap, utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2025-09-10 14:21:50 UTC; yadav
Author: Divendra Yadav [aut, cre], Ursula Laa [aut] , Jayani P. Gamage [aut] , Eun-Kyung Lee [aut]
Maintainer: Divendra Yadav <divendrasinghyadaviit@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-15 08:30:12 UTC

More information about polarisR at CRAN
Permanent link

Package minimaxALT updated to version 1.0.1 with previous version 1.0.0 dated 2025-09-01

Title: Generate Optimal Designs of Accelerated Life Test using PSO-Based Algorithm
Description: A computationally efficient solution for generating optimal experimental designs in Accelerated Life Testing (ALT). Leveraging a Particle Swarm Optimization (PSO)-based hybrid algorithm, the package identifies optimal test plans that minimize estimation variance under specified failure models and stress profiles. For more detailed, see Lee et al. (2025), Optimal Robust Strategies for Accelerated Life Tests and Fatigue Testing of Polymer Composite Materials, submitted to Annals of Applied Statistics, <https://imstat.org/journals-and-publications/annals-of-applied-statistics/annals-of-applied-statistics-next-issues/>, and Hoang (2025), Model-Robust Minimax Design of Accelerated Life Tests via PSO-based Hybrid Algorithm, Master' Thesis, Unpublished.
Author: Hoai-Linh Hoang [aut, cre], I-Chen Lee [aut], Ping-Yang Chen [aut], Ray-Bing Chen [aut], Weng Kee Wong [aut]
Maintainer: Hoai-Linh Hoang <hoailinh.hoang17@gmail.com>

Diff between minimaxALT versions 1.0.0 dated 2025-09-01 and 1.0.1 dated 2025-09-15

 DESCRIPTION                      |    6 +++---
 MD5                              |   22 ++++++++++++----------
 R/equivalence_theorem.R          |    8 ++++----
 R/minimaxALT.R                   |   11 ++++++-----
 R/setup.R                        |    4 +---
 man/check_equivalence_theorem.Rd |    5 ++---
 man/find_optimal_alt.Rd          |    7 ++++---
 man/set_design_info.Rd           |    3 ---
 src/Makevars                     |    3 +--
 src/Makevars.win                 |    3 +--
 src/common.h                     |    2 --
 tests                            |only
 12 files changed, 34 insertions(+), 40 deletions(-)

More information about minimaxALT at CRAN
Permanent link

New package cellGeometry with initial version 0.5.4
Package: cellGeometry
Title: Geometric Single Cell Deconvolution
Version: 0.5.4
Description: Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.
License: GPL (>= 3)
Encoding: UTF-8
Imports: circlize, ComplexHeatmap, DelayedArray, dplyr, ensembldb, ggplot2, ggrepel, grid, gtools, matrixStats, mcprogress, parallel, pbmcapply, rlang, scales
Depends: R (>= 4.1.0)
Suggests: future.apply, ggsci, knitr, plotly, Rfast2, rmarkdown, seriation
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-10 12:31:17 UTC; myles
Author: Myles Lewis [aut, cre] , Rachel Lau [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Repository: CRAN
Date/Publication: 2025-09-15 08:20:02 UTC

More information about cellGeometry at CRAN
Permanent link

New package VBphenoR with initial version 1.0.0
Package: VBphenoR
Title: Variational Bayes for Latent Patient Phenotypes in EHR
Version: 1.0.0
Description: Identification of Latent Patient Phenotype from Electronic Health Records (EHR) Data using Variational Bayes Gaussian Mixture Model for Latent Class Analysis and Variational Bayes regression for Biomarker level shifts, both implemented by Coordinate Ascent Variational Inference algorithms. Variational methods are used to enable Bayesian analysis of very large Electronic Health Records data. For VB GMM details see Bishop (2006,ISBN:9780-387-31073-2). For Logistic VB see Jaakkola and Jordan (2000) <doi:10.1023/A:1008932416310>.
License: MIT + file LICENCE
Encoding: UTF-8
Suggests: rmarkdown, testthat (>= 3.0.0)
Imports: stats, CholWishart, pracma, knitr, utils, dbscan, data.table, ggplot2
Depends: R (>= 3.5.0)
LazyData: true
URL: https://github.com/buckleybrian/VBphenoR, https://buckleybrian.github.io/VBphenoR/
BugReports: https://github.com/buckleybrian/VBphenoR/issues
NeedsCompilation: no
Packaged: 2025-09-10 06:57:06 UTC; buckl
Author: Brian Buckley [aut, cre, cph] , Adrian O'Hagan [aut] , Marie Galligan [aut]
Maintainer: Brian Buckley <brian.buckley.1@ucdconnect.ie>
Repository: CRAN
Date/Publication: 2025-09-15 07:40:08 UTC

More information about VBphenoR at CRAN
Permanent link

New package vaxineR with initial version 0.1.0
Package: vaxineR
Title: Vaccine Coverage and Outbreak Risk Analysis
Version: 0.1.0
Description: Provides tools to analyze vaccine coverage data and simulate potential disease outbreak scenarios. It allows users to calculate key epidemiological metrics such as the effective reproduction number (Re), outbreak probabilities, and expected infection counts based on county-level vaccination rates, disease characteristics, and vaccine effectiveness. The package includes historical kindergarten vaccination data for Florida counties and offers functions for generating summary tables, visualizations, and exporting the underlying plot data.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: dplyr, tidyr, ggplot2, scales, purrr, tibble, openxlsx
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Depends: R (>= 3.5)
NeedsCompilation: no
Packaged: 2025-09-10 00:41:47 UTC; TopSoarer
Author: Peiyu Liu [aut, cre], Matt Hitchings [ctb], Ira Longini [ctb]
Maintainer: Peiyu Liu <pyliu0620@outlook.com>
Repository: CRAN
Date/Publication: 2025-09-15 07:30:02 UTC

More information about vaxineR at CRAN
Permanent link

Package SPRT readmission to version 1.1.0 with previous version 1.0 dated 2015-04-14

Title: Sequential Probability Ratio Test (SPRT) Method
Description: Provides functions to perform the Sequential Probability Ratio Test (SPRT) for hypothesis testing in Binomial, Poisson and Normal distributions. The package allows users to specify Type I and Type II error probabilities, decision thresholds, and compare null and alternative hypotheses sequentially as data accumulate. It includes visualization tools for plotting the likelihood ratio path and decision boundaries, making it easier to interpret results. The methods are based on Wald (1945) <doi:10.1214/aoms/1177731118>, who introduced the SPRT as one of the earliest and most powerful sequential analysis techniques. This package is useful in quality control, clinical trials, and other applications requiring early decision-making.The term 'SPRT' is an abbreviation and used intentionally.
Author: Huchesh Budihal [aut, cre]
Maintainer: Huchesh Budihal <hhbudihal17@gmail.com>

This is a re-admission after prior archival of version 1.0 dated 2015-04-14

Diff between SPRT versions 1.0 dated 2015-04-14 and 1.1.0 dated 2025-09-15

 SPRT-1.0/SPRT/R/C.fn.R            |only
 SPRT-1.0/SPRT/R/D.fn.R            |only
 SPRT-1.0/SPRT/R/SPRT-internal.R   |only
 SPRT-1.0/SPRT/R/SPRT.default.R    |only
 SPRT-1.0/SPRT/R/boundary.fn.R     |only
 SPRT-1.0/SPRT/R/llr.fn.R          |only
 SPRT-1.0/SPRT/R/plot.SPRT.R       |only
 SPRT-1.0/SPRT/R/print.SPRT.R      |only
 SPRT-1.0/SPRT/R/waldBoundary.R    |only
 SPRT-1.0/SPRT/man/C.fn.Rd         |only
 SPRT-1.0/SPRT/man/D.fn.Rd         |only
 SPRT-1.0/SPRT/man/SPRT-package.Rd |only
 SPRT-1.0/SPRT/man/SPRT.default.Rd |only
 SPRT-1.0/SPRT/man/boundary.fn.Rd  |only
 SPRT-1.0/SPRT/man/llr.fn.Rd       |only
 SPRT-1.0/SPRT/man/plot.SPRT.Rd    |only
 SPRT-1.0/SPRT/man/print.SPRT.Rd   |only
 SPRT-1.0/SPRT/man/waldBoundary.Rd |only
 SPRT-1.1.0/SPRT/DESCRIPTION       |   33 +++++++++++-----
 SPRT-1.1.0/SPRT/LICENSE           |    4 +-
 SPRT-1.1.0/SPRT/MD5               |   35 ++++++-----------
 SPRT-1.1.0/SPRT/NAMESPACE         |   16 ++++++--
 SPRT-1.1.0/SPRT/R/SPRT.R          |   76 ++++++++++++++++++++++++++++++++++++--
 SPRT-1.1.0/SPRT/R/sprt_plot.R     |only
 SPRT-1.1.0/SPRT/build             |only
 SPRT-1.1.0/SPRT/inst              |only
 SPRT-1.1.0/SPRT/man/sprt.Rd       |only
 SPRT-1.1.0/SPRT/man/sprt_plot.Rd  |only
 SPRT-1.1.0/SPRT/tests             |only
 SPRT-1.1.0/SPRT/vignettes         |only
 30 files changed, 123 insertions(+), 41 deletions(-)

More information about SPRT at CRAN
Permanent link

New package repo.data with initial version 0.1.4
Package: repo.data
Title: R Repository Data
Version: 0.1.4
Description: Retrieve metadata about packages from repositories to explore package dependencies, links between help pages, aliases, package availability on a given date, and other repository dependent outcome. This metadata can be used to help package maintainers and users to navigate changes on dependencies and with reproducibility.
License: GPL (>= 3)
URL: https://github.com/llrs/repo.data, https://llrs.github.io/repo.data/
BugReports: https://github.com/llrs/repo.data/issues
Depends: R (>= 4.5)
Imports: methods, tools, utils
Suggests: igraph (>= 2.1), knitr (>= 1.49), markdown (>= 1.13), rversions (>= 2.1), spelling (>= 2.3)
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2025-09-09 22:54:37 UTC; lluis
Author: Lluis Revilla Sancho [aut, cre, cph]
Maintainer: Lluis Revilla Sancho <lluis.revilla@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-15 07:20:02 UTC

More information about repo.data at CRAN
Permanent link

New package PeruAPIs with initial version 0.1.0
Package: PeruAPIs
Title: Access Peruvian Data via Public APIs and Curated Datasets
Version: 0.1.0
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Description: Provides functions to access data from public RESTful APIs including 'Nager.Date', 'World Bank API', and 'REST Countries API', retrieving real-time or historical data related to Peru, such as holidays, economic indicators, and international demographic and geopolitical indicators. Additionally, the package includes curated datasets focused on Peru, covering topics such as administrative divisions, electoral data, demographics, biodiversity and educational classifications. The package supports reproducible research and teaching by integrating reliable international APIs and structured datasets from public, academic, and government sources. For more information on the APIs, see: 'Nager.Date' <https://date.nager.at/Api>, 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>, and 'REST Countries API' <https://restcountries.com/>.
License: MIT + file LICENSE
Language: en
URL: https://github.com/lightbluetitan/peruapis, https://lightbluetitan.github.io/peruapis/
BugReports: https://github.com/lightbluetitan/peruapis/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
Imports: utils, httr, jsonlite, dplyr, scales, tibble
Suggests: ggplot2, testthat (>= 3.0.0), knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-10 01:21:05 UTC; Renzo
Author: Renzo Caceres Rossi [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-15 07:30:12 UTC

More information about PeruAPIs at CRAN
Permanent link

Package penalizedSVM updated to version 1.2.0 with previous version 1.1.4 dated 2023-03-23

Title: Feature Selection SVM using Penalty Functions
Description: Support Vector Machine (SVM) classification with simultaneous feature selection using penalty functions is implemented. The smoothly clipped absolute deviation (SCAD), 'L1-norm', 'Elastic Net' ('L1-norm' and 'L2-norm') and 'Elastic SCAD' (SCAD and 'L2-norm') penalties are available. The tuning parameters can be found using either a fixed grid or a interval search.
Author: Natalia Becker [aut], Wiebke Werft [aut], Axel Benner [aut], Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>

Diff between penalizedSVM versions 1.1.4 dated 2023-03-23 and 1.2.0 dated 2025-09-15

 DESCRIPTION                 |   33 ++-
 MD5                         |   18 +
 NEWS.md                     |    7 
 R/svm.fs.R                  |  451 ++++++++++++++++++++++----------------------
 README.md                   |only
 inst                        |only
 man/penalizedSVM-package.Rd |    2 
 tests                       |only
 8 files changed, 280 insertions(+), 231 deletions(-)

More information about penalizedSVM at CRAN
Permanent link

New package lbaModel with initial version 0.2.9.2
Package: lbaModel
Title: The Linear Ballistic Accumulation Model
Version: 0.2.9.2
Date: 2025-09-10
Maintainer: Yi-Shin Lin <yishinlin001@gmail.com>
Description: Provides density, distribution and random generation functions for the Linear Ballistic Accumulation (LBA) model, a widely used choice response time model in cognitive psychology. The package supports model specifications, parameter estimation, and likelihood computation, facilitating simulation and statistical inference for LBA-based experiments. For details on the LBA model, see Brown and Heathcote (2008) <doi:10.1016/j.cogpsych.2007.12.002>.
License: GPL (>= 2)
Imports: ggdmcPrior, ggdmcModel, Rcpp (>= 1.0.7), methods
Depends: R (>= 3.3.0)
LinkingTo: Rcpp (>= 1.0.7), RcppArmadillo (>= 0.10.7.5.0), ggdmcHeaders
Suggests: testthat
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2025-09-10 06:05:21 UTC; yslin
Author: Yi-Shin Lin [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-15 07:30:07 UTC

More information about lbaModel at CRAN
Permanent link

New package ineapir with initial version 0.2.5
Package: ineapir
Title: Obtaining Data Published by the National Statistics Institute
Version: 0.2.5
Description: Get open statistical data and metadata disseminated by the National Statistics Institute of Spain (INE). The functions return data frames with the requested information thanks to calls to the 'INE' API <https://www.ine.es/dyngs/DAB/index.htm?cid=1100>.
License: EUPL (== 1.2)
Encoding: UTF-8
Imports: httr, jsonlite
URL: https://github.com/es-ine/ineapir, https://es-ine.github.io/ineapir/
BugReports: https://github.com/es-ine/ineapir/issues
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2025-09-10 07:21:29 UTC; U851427
Author: David Crespo [aut, cre], National Statistics Institute, INE [cph]
Maintainer: David Crespo <david.crespo.roces@ine.es>
Repository: CRAN
Date/Publication: 2025-09-15 07:40:02 UTC

More information about ineapir at CRAN
Permanent link

Package biometryassist updated to version 1.3.3 with previous version 1.3.2 dated 2025-09-11

Title: Functions to Assist Design and Analysis of Agronomic Experiments
Description: Provides functions to aid in the design and analysis of agronomic and agricultural experiments through easy access to documentation and helper functions, especially for users who are learning these concepts. While not required for most functionality, this package enhances the `asreml` package which provides a computationally efficient algorithm for fitting mixed models using Residual Maximum Likelihood. It is a commercial package that can be purchased as 'asreml-R' from 'VSNi' <https://vsni.co.uk/>, who will supply a zip file for local installation/updating (see <https://asreml.kb.vsni.co.uk/>).
Author: Sharon Nielsen [aut], Sam Rogers [aut, cre], Annie Conway [aut], University of Adelaide [cph, fnd] , Grains Research and Development Corporation [cph, fnd]
Maintainer: Sam Rogers <biometrytraining@adelaide.edu.au>

Diff between biometryassist versions 1.3.2 dated 2025-09-11 and 1.3.3 dated 2025-09-15

 DESCRIPTION                                |    8 +++---
 MD5                                        |   10 ++++----
 NEWS.md                                    |    6 +++++
 tests/testthat/_snaps/utility_functions.md |   34 ++++++++++++++---------------
 tests/testthat/test-mct.R                  |    9 ++++---
 tests/testthat/test-zzz_install_asreml.R   |    3 --
 6 files changed, 38 insertions(+), 32 deletions(-)

More information about biometryassist at CRAN
Permanent link

Package TPmsm updated to version 1.2.14 with previous version 1.2.12 dated 2023-12-07

Title: Estimation of Transition Probabilities in Multistate Models
Description: Estimation of transition probabilities for the illness-death model and or the three-state progressive model.
Author: Artur Araujo [aut, cre] , Luis Meira-Machado [aut] , Javier Roca-Pardinas [aut]
Maintainer: Artur Araujo <artur.stat@gmail.com>

Diff between TPmsm versions 1.2.12 dated 2023-12-07 and 1.2.14 dated 2025-09-15

 DESCRIPTION                 |   31 
 MD5                         |  158 +-
 R/BtoTPCmsm.R               |    6 
 R/BtoTPmsm.R                |   22 
 R/Clean.R                   |    6 
 R/OutTPmsm.R                |    6 
 R/Outetm.R                  |   46 
 R/Outp3state.R              |    6 
 R/TPmsmOut.R                |   38 
 R/Trans.R                   |   86 -
 R/TransBoot.R               |  124 +-
 R/TransCheck.R              |  258 ++--
 R/TransMatrix.R             |   82 -
 R/TransMethod.R             |   40 
 R/TransPROB.R               |   90 -
 R/TransWidth.R              |   30 
 R/addlegend.R               |   30 
 R/as.data.frame.survTP.R    |   14 
 R/contour.TPCmsm.R          |  122 +-
 R/corrTP.R                  |   58 -
 R/csample.int.R             |    8 
 R/dgpTP.R                   |   20 
 R/image.TPCmsm.R            |  190 +--
 R/lines.TPCmsm.R            |  150 +-
 R/lines.TPmsm.R             |   62 -
 R/methods.R                 |   62 -
 R/object.R                  |   14 
 R/plot.TPCmsm.R             |  170 +--
 R/plot.TPmsm.R              |   68 -
 R/print.TPCmsm.R            |   46 
 R/print.TPmsm.R             |   52 
 R/setPackageSeedTP.R        |   26 
 R/setSeedTP.R               |   50 
 R/setThreadsTP.R            |   16 
 R/survTP.R                  |   88 -
 R/toTPCmsm.R                |    6 
 R/toTPmsm.R                 |   22 
 R/transAJ.R                 |   18 
 R/transIPCW.R               |   30 
 R/transKMPW.R               |   24 
 R/transKMW.R                |   24 
 R/transLIN.R                |   32 
 R/transLS.R                 |   28 
 R/transPAJ.R                |   18 
 R/uniqueTP.R                |   14 
 R/zzz.R                     |    6 
 README.md                   |  172 +--
 build/partial.rdb           |binary
 build/vignette.rds          |binary
 inst/CITATION               |  122 +-
 inst/NEWS.Rd                |   12 
 inst/doc/TPmsm.R            |   24 
 inst/doc/TPmsm.Rnw          | 2324 ++++++++++++++++++++++----------------------
 inst/doc/TPmsm.pdf          |binary
 man/TPmsm-package.Rd        |    8 
 man/TPmsmOut.Rd             |    2 
 man/as.data.frame.survTP.Rd |    2 
 man/bladderTP.Rd            |   86 -
 man/colonTP.Rd              |  110 +-
 man/contour.TPCmsm.Rd       |    2 
 man/corrTP.Rd               |    2 
 man/dgpTP.Rd                |    2 
 man/heartTP.Rd              |   73 -
 man/image.TPCmsm.Rd         |    2 
 man/lines.TPCmsm.Rd         |    2 
 man/lines.TPmsm.Rd          |    2 
 man/plot.TPCmsm.Rd          |    2 
 man/plot.TPmsm.Rd           |    2 
 man/setPackageSeedTP.Rd     |    2 
 man/setSeedTP.Rd            |    2 
 man/setThreadsTP.Rd         |    2 
 man/survTP.Rd               |    2 
 man/transAJ.Rd              |    2 
 man/transIPCW.Rd            |    2 
 man/transKMPW.Rd            |    2 
 man/transKMW.Rd             |    2 
 man/transLIN.Rd             |    2 
 man/transLS.Rd              |    2 
 man/transPAJ.Rd             |    2 
 vignettes/TPmsm.Rnw         | 2324 ++++++++++++++++++++++----------------------
 80 files changed, 3904 insertions(+), 3890 deletions(-)

More information about TPmsm at CRAN
Permanent link

Package riskyr updated to version 0.5.0 with previous version 0.4.0 dated 2022-08-15

Title: Rendering Risk Literacy more Transparent
Description: Risk-related information (like the prevalence of conditions, the sensitivity and specificity of diagnostic tests, or the effectiveness of interventions or treatments) can be expressed in terms of frequencies or probabilities. By providing a toolbox of corresponding metrics and representations, 'riskyr' computes, translates, and visualizes risk-related information in a variety of ways. Adopting multiple complementary perspectives provides insights into the interplay between key parameters and renders teaching and training programs on risk literacy more transparent (see <doi:10.3389/fpsyg.2020.567817>, for details).
Author: Hansjoerg Neth [aut, cre] , Felix Gaisbauer [aut] , Nico Gradwohl [aut] , Wolfgang Gaissmaier [aut]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>

Diff between riskyr versions 0.4.0 dated 2022-08-15 and 0.5.0 dated 2025-09-15

 DESCRIPTION                             |   25 
 MD5                                     |  192 ++--
 NEWS.md                                 |  216 +++--
 R/comp_util.R                           |  637 ++++++++++++++-
 R/init_prob.R                           |   26 
 R/init_txt.R                            |   15 
 R/plot_crisk.R                          |    3 
 R/plot_prism.R                          |    2 
 R/plot_util.R                           |  119 +-
 R/riskyr_class.R                        |   14 
 R/riskyr_sims.R                         |    4 
 README.md                               |  522 +++++++-----
 build/partial.rdb                       |binary
 build/vignette.rds                      |binary
 inst/CITATION                           |   27 
 inst/WORDLIST                           |   10 
 inst/doc/A_user_guide.R                 |  140 +--
 inst/doc/A_user_guide.Rmd               |   30 
 inst/doc/A_user_guide.html              | 1300 ++++++++++++++++++++++----------
 inst/doc/B_data_formats.Rmd             |    2 
 inst/doc/B_data_formats.html            |  704 +++++++++++------
 inst/doc/C_confusion_matrix.R           |   14 
 inst/doc/C_confusion_matrix.Rmd         |    2 
 inst/doc/C_confusion_matrix.html        |  580 ++++++++++----
 inst/doc/D_functional_perspectives.R    |   32 
 inst/doc/D_functional_perspectives.Rmd  |   12 
 inst/doc/D_functional_perspectives.html |  326 +++++---
 inst/doc/E_riskyr_primer.R              |   46 -
 inst/doc/E_riskyr_primer.Rmd            |   25 
 inst/doc/E_riskyr_primer.html           |  960 +++++++++++++++--------
 inst/pix/logo.png                       |binary
 inst/pix/riskyr_hex_petgrey.png         |only
 man/BRCA1.Rd                            |    2 
 man/BRCA1_mam.Rd                        |    4 
 man/BRCA1_ova.Rd                        |    4 
 man/BRCA2.Rd                            |    2 
 man/BRCA2_mam.Rd                        |    4 
 man/BRCA2_ova.Rd                        |    4 
 man/acc.Rd                              |    2 
 man/accu.Rd                             |   10 
 man/as_pb.Rd                            |    3 
 man/as_pc.Rd                            |    3 
 man/comp_FDR.Rd                         |    4 
 man/comp_FOR.Rd                         |    4 
 man/comp_NPV.Rd                         |    4 
 man/comp_PPV.Rd                         |    4 
 man/comp_acc.Rd                         |    4 
 man/comp_accu_freq.Rd                   |    8 
 man/comp_accu_prob.Rd                   |    8 
 man/comp_comp_pair.Rd                   |    4 
 man/comp_complement.Rd                  |    4 
 man/comp_complete_prob_set.Rd           |    4 
 man/comp_err.Rd                         |    8 
 man/comp_fart.Rd                        |    4 
 man/comp_freq_freq.Rd                   |    2 
 man/comp_freq_prob.Rd                   |    2 
 man/comp_min_N.Rd                       |    2 
 man/comp_mirt.Rd                        |    4 
 man/comp_ppod.Rd                        |    4 
 man/comp_prob.Rd                        |    2 
 man/comp_prob_freq.Rd                   |    2 
 man/comp_prob_prob.Rd                   |    2 
 man/comp_sens.Rd                        |    4 
 man/comp_spec.Rd                        |    4 
 man/df_scenarios.Rd                     |    4 
 man/err.Rd                              |    4 
 man/freq.Rd                             |    8 
 man/init_txt.Rd                         |    2 
 man/num.Rd                              |    8 
 man/pal.Rd                              |    6 
 man/pal_bw.Rd                           |    6 
 man/pal_bwp.Rd                          |    6 
 man/pal_crisk.Rd                        |    2 
 man/pal_kn.Rd                           |   10 
 man/pal_mbw.Rd                          |   10 
 man/pal_mod.Rd                          |   10 
 man/pal_org.Rd                          |   10 
 man/pal_rgb.Rd                          |   10 
 man/pal_unikn.Rd                        |   10 
 man/pal_vir.Rd                          |   10 
 man/plot.box.Rd                         |    5 
 man/plot.riskyr.Rd                      |    4 
 man/print.box.Rd                        |only
 man/prob.Rd                             |    8 
 man/read_popu.Rd                        |    4 
 man/riskyr.Rd                           |    6 
 man/summary.riskyr.Rd                   |    4 
 man/t_A.Rd                              |    4 
 man/t_B.Rd                              |    4 
 man/t_I.Rd                              |    4 
 man/txt.Rd                              |    4 
 man/txt_TF.Rd                           |    8 
 man/txt_org.Rd                          |    8 
 vignettes/A_user_guide.Rmd              |   30 
 vignettes/B_data_formats.Rmd            |    2 
 vignettes/C_confusion_matrix.Rmd        |    2 
 vignettes/D_functional_perspectives.Rmd |   12 
 vignettes/E_riskyr_primer.Rmd           |   25 
 98 files changed, 4245 insertions(+), 2116 deletions(-)

More information about riskyr at CRAN
Permanent link

Package peperr updated to version 1.6 with previous version 1.5 dated 2023-03-22

Title: Parallelised Estimation of Prediction Error
Description: Designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated. Methods used in the package are detailed in Porzelius Ch., Binder H. and Schumacher M. (2009) <doi:10.1093/bioinformatics/btp062> and were used, for instance, in Porzelius Ch., Schumacher M. and Binder H. (2011) <doi:10.1007/s00180-011-0236-6>.
Author: Christine Porzelius [aut], Harald Binder [aut], Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>

Diff between peperr versions 1.5 dated 2023-03-22 and 1.6 dated 2025-09-15

 DESCRIPTION              |   29 +++++++++++++++++++++--------
 MD5                      |   34 +++++++++++++++++++++++++---------
 NAMESPACE                |    2 +-
 NEWS.md                  |    6 ++++++
 R/aggregation.brier.R    |    4 ++--
 R/aggregation.misclass.R |    4 ++--
 README.md                |    7 ++++---
 inst                     |only
 man/peperr.Rd            |    6 +++---
 src/R_init_peperr.c      |    2 +-
 src/noinf_R.h            |    2 +-
 tests                    |only
 12 files changed, 66 insertions(+), 30 deletions(-)

More information about peperr at CRAN
Permanent link

Package BrazilDataAPI updated to version 0.2.0 with previous version 0.1.0 dated 2025-07-09

Title: Access Brazilian Data via APIs and Curated Datasets
Description: Provides functions to access data from the 'BrasilAPI', 'REST Countries API', 'Nager.Date API', and 'World Bank API', related to Brazil's postal codes, banks, holidays, company registrations, international country indicators, public holidays information, and economic development data. Additionally, the package includes curated datasets related to Brazil, covering topics such as demographic data (males and females by state and year), river levels, environmental emission factors, film festivals, and yellow fever outbreak records. The package supports research and analysis focused on Brazil by integrating open APIs with high-quality datasets from multiple domains. For more information on the APIs, see: 'BrasilAPI' <https://brasilapi.com.br/>, 'Nager.Date' <https://date.nager.at/Api>, 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>, and 'REST Countries API' <https://restcountries.com/>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>

Diff between BrazilDataAPI versions 0.1.0 dated 2025-07-09 and 0.2.0 dated 2025-09-15

 BrazilDataAPI-0.1.0/BrazilDataAPI/R/get_country_info.R                              |only
 BrazilDataAPI-0.1.0/BrazilDataAPI/man/get_country_info.Rd                           |only
 BrazilDataAPI-0.1.0/BrazilDataAPI/tests/testthat/test-get_country_info.R            |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/DESCRIPTION                                       |   32 +-
 BrazilDataAPI-0.2.0/BrazilDataAPI/MD5                                               |  109 ++++---
 BrazilDataAPI-0.2.0/BrazilDataAPI/NAMESPACE                                         |   18 +
 BrazilDataAPI-0.2.0/BrazilDataAPI/NEWS.md                                           |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/brazildataapi-package.R                         |   12 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/data-documentation.R                            |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_banks.R                              |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cep.R                                |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_child_mortality.R                    |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cnpj.R                               |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cpi.R                                |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_energy_use.R                         |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_gdp.R                                |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_holidays.R                           |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_hospital_beds.R                      |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_life_expectancy.R                    |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_literacy_rate.R                      |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_municipalities.R                     |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_population.R                         |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_rate_name.R                          |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_rates.R                              |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_unemployment.R                       |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_vehicle_brands.R                     |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_country_info_br.R                           |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/utils.R                                         |   39 ++
 BrazilDataAPI-0.2.0/BrazilDataAPI/R/view_datasets_BrazilDataAPI.R                   |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/README.md                                         |   29 +
 BrazilDataAPI-0.2.0/BrazilDataAPI/build/vignette.rds                                |binary
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/CITATION                                     |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.R                 |   15 
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.Rmd               |   59 +++
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.html              |  152 ++++++----
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/licenses/LICENSE                             |    2 
 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/licenses/LICENSE.md                          |   21 +
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/BrazilDataAPI.Rd                              |    8 
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_child_mortality.Rd                 |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_cpi.Rd                             |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_energy_use.Rd                      |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_gdp.Rd                             |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_holidays.Rd                        |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_hospital_beds.Rd                   |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_life_expectancy.Rd                 |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_literacy_rate.Rd                   |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_population.Rd                      |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_unemployment.Rd                    |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_country_info_br.Rd                        |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brasil_females_df.R           |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brasil_males_df.R             |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brazil_films_df.R             |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Yellow_Fever_list.R           |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_banks.R            |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cep.R              |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_child_mortality.R  |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cnpj.R             |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cpi.R              |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_energy_use.R       |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_gdp.R              |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_holidays.R         |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_hospital_beds.R    |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_life_expectancy.R  |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_literacy_rate.R    |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_municipalities.R   |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_population.R       |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_rate_name.R        |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_unemployment.R     |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_vehicle_brands.R   |   49 ++-
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_country_info_br.R         |only
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-manaus_ts.R                   |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-sp_emission_factors_df.R      |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-view_datasets_BrazilDataAPI.R |    4 
 BrazilDataAPI-0.2.0/BrazilDataAPI/vignettes/BrazilDataAPI_vignette.Rmd              |   59 +++
 74 files changed, 492 insertions(+), 200 deletions(-)

More information about BrazilDataAPI at CRAN
Permanent link

Package VMDecomp updated to version 1.0.2 with previous version 1.0.1 dated 2022-07-04

Title: Variational Mode Decomposition
Description: 'RcppArmadillo' implementation for the Matlab code of the 'Variational Mode Decomposition' and 'Two-Dimensional Variational Mode Decomposition'. For more information, see (i) 'Variational Mode Decomposition' by K. Dragomiretskiy and D. Zosso in IEEE Transactions on Signal Processing, vol. 62, no. 3, pp. 531-544, Feb.1, 2014, <doi:10.1109/TSP.2013.2288675>; (ii) 'Two-Dimensional Variational Mode Decomposition' by Dragomiretskiy, K., Zosso, D. (2015), In: Tai, XC., Bae, E., Chan, T.F., Lysaker, M. (eds) Energy Minimization Methods in Computer Vision and Pattern Recognition. EMMCVPR 2015. Lecture Notes in Computer Science, vol 8932. Springer, <doi:10.1007/978-3-319-14612-6_15>.
Author: Lampros Mouselimis [aut, cre] , Dominique Zosso [cph] , Konstantin Dragomiretskiy [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between VMDecomp versions 1.0.1 dated 2022-07-04 and 1.0.2 dated 2025-09-15

 DESCRIPTION                                 |   17 
 MD5                                         |   22 
 NEWS.md                                     |    5 
 README.md                                   |    6 
 build/vignette.rds                          |binary
 inst/doc/variatonal_mode_decomposition.R    |  306 ++++++------
 inst/doc/variatonal_mode_decomposition.Rmd  |    2 
 inst/doc/variatonal_mode_decomposition.html |  687 ++++++++++++++++++----------
 src/Makevars                                |   17 
 src/Makevars.win                            |   17 
 src/vmd.cpp                                 |    1 
 vignettes/variatonal_mode_decomposition.Rmd |    2 
 12 files changed, 648 insertions(+), 434 deletions(-)

More information about VMDecomp at CRAN
Permanent link

Package multinet updated to version 4.3 with previous version 4.2.2 dated 2025-04-08

Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks <doi:10.18637/jss.v098.i08>.
Author: Matteo Magnani [aut, cre], Luca Rossi [aut] , Davide Vega [aut] , Obaida Hanteer [ctb]
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>

Diff between multinet versions 4.2.2 dated 2025-04-08 and 4.3 dated 2025-09-15

 DESCRIPTION                              |   17 ++++++++---------
 MD5                                      |   30 +++++++++++++++++++++++++-----
 NEWS                                     |    4 ++++
 src/Makevars                             |    4 ++--
 src/Makevars.win                         |    4 ++--
 src/r_functions.cpp                      |   18 ++----------------
 src/src/community/_impl/abacus_utils.hpp |only
 src/src/community/_impl/abacus_utils.ipp |only
 src/src/community/abacus.hpp             |only
 src/src/community/abacus.ipp             |only
 src/src/core/arules                      |only
 11 files changed, 43 insertions(+), 34 deletions(-)

More information about multinet at CRAN
Permanent link

Package KernelKnn updated to version 1.1.6 with previous version 1.1.5 dated 2023-01-06

Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis [aut, cre] , Matthew Parks [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between KernelKnn versions 1.1.5 dated 2023-01-06 and 1.1.6 dated 2025-09-15

 DESCRIPTION                                                   |   15 
 MD5                                                           |   26 
 NEWS.md                                                       |    7 
 README.md                                                     |    5 
 build/vignette.rds                                            |binary
 inst/doc/binary_classification_using_the_ionosphere_data.R    |   36 
 inst/doc/binary_classification_using_the_ionosphere_data.html |  664 ++++++--
 inst/doc/image_classification_using_MNIST_CIFAR_data.R        |  462 +++---
 inst/doc/image_classification_using_MNIST_CIFAR_data.html     |  739 ++++++----
 inst/doc/regression_using_the_housing_data.R                  |   36 
 inst/doc/regression_using_the_housing_data.html               |  617 +++++---
 src/Makevars                                                  |    4 
 src/Makevars.win                                              |    6 
 src/distance_metrics.cpp                                      |    1 
 14 files changed, 1672 insertions(+), 946 deletions(-)

More information about KernelKnn at CRAN
Permanent link

Package here updated to version 1.0.2 with previous version 1.0.1 dated 2020-12-13

Title: A Simpler Way to Find Your Files
Description: Constructs paths to your project's files. Declare the relative path of a file within your project with 'i_am()'. Use the 'here()' function as a drop-in replacement for 'file.path()', it will always locate the files relative to your project root.
Author: Kirill Mueller [aut, cre] , Jennifer Bryan [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>

Diff between here versions 1.0.1 dated 2020-12-13 and 1.0.2 dated 2025-09-15

 DESCRIPTION                      |   23 -
 MD5                              |   36 +-
 NEWS.md                          |   19 +
 R/aaa.R                          |    3 
 R/here.R                         |    2 
 R/zzz.R                          |    2 
 README.md                        |   71 +++--
 build/vignette.rds               |binary
 inst/doc/here.R                  |   14 -
 inst/doc/here.Rmd                |    6 
 inst/doc/here.html               |  535 +++++++++++++++++++++++----------------
 inst/doc/rmarkdown.R             |    4 
 inst/doc/rmarkdown.html          |  184 ++++++++-----
 man/here.Rd                      |    5 
 man/i_am.Rd                      |    2 
 man/set_here.Rd                  |    2 
 tests/testthat/_snaps/dr_here.md |   21 -
 tests/testthat/_snaps/i_am.md    |    7 
 vignettes/here.Rmd               |    6 
 19 files changed, 571 insertions(+), 371 deletions(-)

More information about here at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.