Title: 'juice' + 'markdown': Convert 'R Markdown' into 'HTML' with
Inline Styles
Description: A convenience tool to create 'HTML' with inline styles using
'juicyjuice' and 'markdown' packages. It is particularly useful when working
on a content management system (CMS) whose code editor eliminates style and
link tags. The main use case of the package is the learning management system,
'Moodle'. Additional helper functions for teaching purposes are provided. Learn
more about 'juicedown' at <https://kenjisato.github.io/juicedown/>.
Author: Kenji Sato [aut, cre, cph]
Maintainer: Kenji Sato <kenji@kenjisato.jp>
Diff between juicedown versions 0.1.1 dated 2023-09-05 and 0.1.2 dated 2025-09-15
DESCRIPTION | 15 +++++++++------ MD5 | 14 +++++++------- NEWS.md | 7 ++++++- R/includeFlickr.R | 2 +- R/includeMedia.R | 4 ++-- man/includeAudio.Rd | 2 +- man/includeText.Rd | 2 +- man/juicedown-package.Rd | 2 ++ 8 files changed, 29 insertions(+), 19 deletions(-)
Title: Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb] ,
Wouter van der Bijl [ctb] ,
Giovanni M. Marchetti [ctr]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.6.0 dated 2025-03-21 and 1.7.0 dated 2025-09-15
dsem-1.6.0/dsem/inst/doc/vignette.R |only dsem-1.6.0/dsem/inst/doc/vignette.Rmd |only dsem-1.6.0/dsem/inst/doc/vignette.html |only dsem-1.6.0/dsem/vignettes/vignette.Rmd |only dsem-1.7.0/dsem/DESCRIPTION | 20 +- dsem-1.7.0/dsem/MD5 | 72 ++++--- dsem-1.7.0/dsem/NAMESPACE | 2 dsem-1.7.0/dsem/NEWS.md | 12 + dsem-1.7.0/dsem/R/compute_nll.R | 6 dsem-1.7.0/dsem/R/dsem.R | 59 +++++- dsem-1.7.0/dsem/R/make_dsem_ram.R | 14 - dsem-1.7.0/dsem/R/make_matrices.R | 17 + dsem-1.7.0/dsem/R/stepwise_selection.R | 17 + dsem-1.7.0/dsem/R/utility.R | 174 ++++++++++++++++-- dsem-1.7.0/dsem/README.md | 6 dsem-1.7.0/dsem/build/partial.rdb |binary dsem-1.7.0/dsem/build/vignette.rds |binary dsem-1.7.0/dsem/inst/doc/dynamic_factor_analysis.html | 34 +-- dsem-1.7.0/dsem/inst/doc/features.R |only dsem-1.7.0/dsem/inst/doc/features.Rmd |only dsem-1.7.0/dsem/inst/doc/features.html |only dsem-1.7.0/dsem/inst/doc/model-description.R |only dsem-1.7.0/dsem/inst/doc/model-description.Rmd |only dsem-1.7.0/dsem/inst/doc/model-description.html |only dsem-1.7.0/dsem/inst/doc/spatial_diffusion.html | 3 dsem-1.7.0/dsem/man/cAIC.Rd | 4 dsem-1.7.0/dsem/man/classify_variables.Rd | 2 dsem-1.7.0/dsem/man/convert_equations.Rd | 4 dsem-1.7.0/dsem/man/dsem.Rd | 92 +++++---- dsem-1.7.0/dsem/man/dsemRTMB.Rd | 16 - dsem-1.7.0/dsem/man/dsem_control.Rd | 31 +-- dsem-1.7.0/dsem/man/figures |only dsem-1.7.0/dsem/man/logLik.dsem.Rd | 4 dsem-1.7.0/dsem/man/loo_residuals.Rd | 2 dsem-1.7.0/dsem/man/make_dsem_ram.Rd | 76 ++++--- dsem-1.7.0/dsem/man/make_matrices.Rd | 4 dsem-1.7.0/dsem/man/parse_path.Rd | 2 dsem-1.7.0/dsem/man/partition_variance.Rd |only dsem-1.7.0/dsem/man/stepwise_selection.Rd | 9 dsem-1.7.0/dsem/man/test_dsep.Rd | 2 dsem-1.7.0/dsem/man/total_effect.Rd | 59 ++++-- dsem-1.7.0/dsem/src/dsem.cpp | 103 ++++++++++ dsem-1.7.0/dsem/vignettes/features.Rmd |only dsem-1.7.0/dsem/vignettes/model-description.Rmd |only 44 files changed, 622 insertions(+), 224 deletions(-)
Title: Model Classifier for Binary Classification
Description: A collection of tools that support data splitting, predictive modeling, and model evaluation.
A typical function is to split a dataset into a training dataset and a test dataset.
Then compare the data distribution of the two datasets.
Another feature is to support the development of predictive models and to compare the performance of several predictive models,
helping to select the best model.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>
Diff between alookr versions 0.3.91 dated 2025-08-24 and 0.4.0 dated 2025-09-15
alookr |only 1 file changed
Title: Methods for ''A Fast Alternative for the R x C Ecological
Inference Case''
Description: Estimates the probability matrix for the R×C Ecological Inference problem using the Expectation-Maximization Algorithm with four approximation methods for the E-Step, and an exact method as well. It also provides a bootstrap function to estimate the standard deviation of the estimated probabilities. In addition, it has functions that aggregate rows optimally to have more reliable estimates in cases of having few data points. For comparing the probability estimates of two groups, a Wald test routine is implemented. The library has data from the first round of the Chilean Presidential Election 2021 and can also generate synthetic election data. Methods described in Thraves, Charles; Ubilla, Pablo; Hermosilla, Daniel (2024) ''A Fast Ecological Inference Algorithm for the R×C case'' <doi:10.2139/ssrn.4832834>.
Author: Charles Thraves [aut] ,
Pablo Ubilla [aut],
Daniel Hermosilla [aut, cre],
Hanson Troy [ctb, cph]
Maintainer: Daniel Hermosilla <daniel.hermosilla.r@ug.uchile.cl>
Diff between fastei versions 0.0.0.9 dated 2025-07-18 and 0.0.0.10 dated 2025-09-15
fastei-0.0.0.10/fastei/DESCRIPTION | 12 fastei-0.0.0.10/fastei/MD5 | 80 +- fastei-0.0.0.10/fastei/NAMESPACE | 2 fastei-0.0.0.10/fastei/R/RcppExports.R | 20 fastei-0.0.0.10/fastei/R/data-utils.R | 2 fastei-0.0.0.10/fastei/R/eim-class.R | 118 +++- fastei-0.0.0.10/fastei/R/instancer.R | 19 fastei-0.0.0.10/fastei/R/internal.R | 30 - fastei-0.0.0.10/fastei/inst/doc/demonstration.html | 17 fastei-0.0.0.10/fastei/man/fastei-package.Rd | 2 fastei-0.0.0.10/fastei/man/get_eim_chile.Rd | 2 fastei-0.0.0.10/fastei/man/run_em.Rd | 19 fastei-0.0.0.10/fastei/man/simulate_election.Rd | 1 fastei-0.0.0.10/fastei/src/LP.c |only fastei-0.0.0.10/fastei/src/LP.h |only fastei-0.0.0.10/fastei/src/MCMC.c |only fastei-0.0.0.10/fastei/src/MCMC.h |only fastei-0.0.0.10/fastei/src/Makevars | 3 fastei-0.0.0.10/fastei/src/RcppExports.cpp | 62 +- fastei-0.0.0.10/fastei/src/bootstrap.c | 45 - fastei-0.0.0.10/fastei/src/bootstrap.h | 2 fastei-0.0.0.10/fastei/src/dynamic_program.c | 76 +- fastei-0.0.0.10/fastei/src/dynamic_program.h | 22 fastei-0.0.0.10/fastei/src/exact.c | 209 ++----- fastei-0.0.0.10/fastei/src/exact.h | 23 fastei-0.0.0.10/fastei/src/globals.h | 92 ++- fastei-0.0.0.10/fastei/src/main.c | 601 ++++++++++++++------- fastei-0.0.0.10/fastei/src/main.h | 89 --- fastei-0.0.0.10/fastei/src/multinomial.c | 54 - fastei-0.0.0.10/fastei/src/multinomial.h | 4 fastei-0.0.0.10/fastei/src/multivariate-cdf.c | 431 ++++++++++----- fastei-0.0.0.10/fastei/src/multivariate-cdf.h | 2 fastei-0.0.0.10/fastei/src/multivariate-pdf.c | 254 ++++---- fastei-0.0.0.10/fastei/src/multivariate-pdf.h | 2 fastei-0.0.0.10/fastei/src/utils_hash.c | 2 fastei-0.0.0.10/fastei/src/utils_hash.h | 6 fastei-0.0.0.10/fastei/src/utils_matrix.c | 118 +++- fastei-0.0.0.10/fastei/src/utils_matrix.h | 21 fastei-0.0.0.10/fastei/src/utils_multivariate.c | 9 fastei-0.0.0.10/fastei/src/utils_multivariate.h | 4 fastei-0.0.0.10/fastei/src/wrapper.cpp | 149 ++--- fastei-0.0.0.10/fastei/src/wrapper.h | 71 +- fastei-0.0.0.9/fastei/src/hitAndRun.c |only fastei-0.0.0.9/fastei/src/hitAndRun.h |only 44 files changed, 1612 insertions(+), 1063 deletions(-)
Title: Produce Forest Plots to Visualize Covariate Effects
Description: Produce forest plots to visualize covariate effects using either
the command line or an interactive 'Shiny' application.
Author: Samer Mouksassi [aut, cre] ,
Benjamin Rich [aut],
Dean Attali [ctb]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between coveffectsplot versions 1.0.6 dated 2025-01-12 and 1.0.7 dated 2025-09-15
coveffectsplot-1.0.6/coveffectsplot/inst/shiny/rsconnect |only coveffectsplot-1.0.6/coveffectsplot/vignettes/Figure_8_4.png |only coveffectsplot-1.0.7/coveffectsplot/DESCRIPTION | 17 coveffectsplot-1.0.7/coveffectsplot/MD5 | 74 coveffectsplot-1.0.7/coveffectsplot/NEWS.md | 5 coveffectsplot-1.0.7/coveffectsplot/R/forest_plot.R | 12 coveffectsplot-1.0.7/coveffectsplot/build/vignette.rds |binary coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.R | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.Rmd | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Exposure_Response_Example.html | 21 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PKPD_Example.html | 15 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.R | 5 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.Rmd | 56 coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example.html | 144 - coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.R | 122 + coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.Rmd | 127 + coveffectsplot-1.0.7/coveffectsplot/inst/doc/PK_Example_full.html | 331 ++- coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.R | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.Rmd | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/Pediatric_Cov_Sim.html | 44 coveffectsplot-1.0.7/coveffectsplot/inst/doc/app.html | 2 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.R | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.Rmd | 1 coveffectsplot-1.0.7/coveffectsplot/inst/doc/introduction_to_coveffectsplot.html | 23 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/global.r | 20 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/server.R | 27 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/text/howto.md | 48 coveffectsplot-1.0.7/coveffectsplot/inst/shiny/ui.R | 14 coveffectsplot-1.0.7/coveffectsplot/man/covdatasim.Rd | 52 coveffectsplot-1.0.7/coveffectsplot/man/deltamethod.Rd | 202 - coveffectsplot-1.0.7/coveffectsplot/man/draw_key.Rd | 52 coveffectsplot-1.0.7/coveffectsplot/man/expand_modelframe.Rd | 60 coveffectsplot-1.0.7/coveffectsplot/man/forest_plot.Rd | 1040 +++++----- coveffectsplot-1.0.7/coveffectsplot/man/wtage.Rd | 70 coveffectsplot-1.0.7/coveffectsplot/vignettes/Exposure_Response_Example.Rmd | 1 coveffectsplot-1.0.7/coveffectsplot/vignettes/PK_Example.Rmd | 56 coveffectsplot-1.0.7/coveffectsplot/vignettes/PK_Example_full.Rmd | 127 + coveffectsplot-1.0.7/coveffectsplot/vignettes/Pediatric_Cov_Sim.Rmd | 1 coveffectsplot-1.0.7/coveffectsplot/vignettes/introduction_to_coveffectsplot.Rmd | 1 39 files changed, 1690 insertions(+), 1085 deletions(-)
More information about coveffectsplot at CRAN
Permanent link
Title: Test Surveys by Simulating Spatially-Correlated Populations
Description: Simulate age-structured populations that vary in space and time and
explore the efficacy of a range of built-in or user-defined sampling
protocols to reproduce the population parameters of the known population.
(See Regular et al. (2020) <doi:10.1371/journal.pone.0232822> for more
details).
Author: Paul Regular [aut, cre] ,
Jonathan Babyn [ctb],
Greg Robertson [ctb]
Maintainer: Paul Regular <Paul.Regular@dfo-mpo.gc.ca>
Diff between SimSurvey versions 0.1.7 dated 2025-08-22 and 0.1.8 dated 2025-09-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS.md | 3 +++ R/data.R | 6 +++++- man/land.Rd | 2 +- 6 files changed, 20 insertions(+), 11 deletions(-)
Title: Feel at Home using R, Thanks to Shortcuts Functions Making it
Simple
Description: A collection of personal functions designed to simplify and streamline
common R programming tasks. This package provides reusable tools and shortcuts
for frequently used calculations and workflows.
Author: Raphael Flambard [aut, cre],
Adrien Cocuaud [ctb]
Maintainer: Raphael Flambard <raphael@ralpha.fr>
Diff between R.AlphA.Home versions 1.0.0 dated 2025-02-11 and 1.1.0 dated 2025-09-15
DESCRIPTION | 27 +- MD5 | 87 ++++--- NAMESPACE | 119 ++++++---- NEWS.md |only R/Rtimer.R |only R/cols_pad.R | 66 ++--- R/compareVars.R | 100 ++++---- R/countSwitches.R | 190 ++++++++-------- R/foldAllBr.R | 557 +++++++++++++++++++++++++----------------------- R/globalVariables.R | 200 ++++++++--------- R/importAll.R | 347 ++++++++++++++++++----------- R/left_join_checks.R | 329 ++++++++++++++-------------- R/loadCheck.R |only R/lum_0_100.R | 74 +++--- R/printif.R |only R/quickExport.R |only R/quickSave.R | 150 ++++++------ R/ralpha_fold.R |only R/ralpha_unfold.R |only R/rdate.R | 108 ++++----- R/ret_lum.R | 72 +++--- R/root.R | 38 +-- R/sepThsd.R | 64 ++--- R/setOption.R |only R/shiny_lum_0_100.R | 74 +++--- R/show_diff.R |only R/timer.R | 184 +++++++-------- R/utils-position.R |only README.md | 93 +++++++- inst/rstudio/addins.dcf | 14 - man/Rtimer.Rd |only man/cols_pad.Rd | 64 ++--- man/compareVars.Rd | 94 ++++---- man/countSwitches.Rd | 144 ++++++------ man/figures |only man/foldAllBr.Rd | 93 ++++---- man/importAll.Rd | 161 +++++++------ man/left_join_checks.Rd | 152 ++++++------- man/loadCheck.Rd |only man/lum_0_100.Rd | 46 +-- man/printif.Rd |only man/quickExport.Rd |only man/quickSave.Rd | 72 +++--- man/ralpha_fold.Rd |only man/ralpha_unfold.Rd |only man/rdate.Rd | 92 +++---- man/ret_lum.Rd | 68 ++--- man/root.Rd | 42 +-- man/sepThsd.Rd | 70 +++--- man/setOption.Rd |only man/shiny_lum_0_100.Rd | 42 +-- man/show_diff.Rd |only man/timer.Rd | 128 +++++------ tests |only 54 files changed, 2226 insertions(+), 1935 deletions(-)
Title: Deal with One and Two (Normal) Samples
Description: We introduce an R function
one_two_sample() which can deal with one and two (normal)
samples, Ying-Ying Zhang, Yi Wei (2012) <doi:10.2991/asshm-13.2013.29>.
For one normal sample x, the function reports
descriptive statistics, plot, interval estimation and test of
hypothesis of x. For two normal samples x and y, the function
reports descriptive statistics, plot, interval estimation and
test of hypothesis of x and y, respectively. It also reports
interval estimation and test of hypothesis of mu1-mu2 (the
difference of the means of x and y) and sigma1^2 / sigma2^2
(the ratio of the variances of x and y), tests whether x and y
are from the same population, finds the correlation coefficient
of x and y if x and y have the same length.
Author: Frederic Bertrand [cre] ,
Ying-Ying Zhang [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between OneTwoSamples versions 1.1-0 dated 2023-03-28 and 1.2-0 dated 2025-09-15
OneTwoSamples-1.1-0/OneTwoSamples/tests/tests_OneTwoSamples.R |only OneTwoSamples-1.1-0/OneTwoSamples/vignettes/RnwToTex.R |only OneTwoSamples-1.2-0/OneTwoSamples/DESCRIPTION | 20 - OneTwoSamples-1.2-0/OneTwoSamples/MD5 | 157 +++++++++- OneTwoSamples-1.2-0/OneTwoSamples/NEWS.md | 12 OneTwoSamples-1.2-0/OneTwoSamples/build/partial.rdb |binary OneTwoSamples-1.2-0/OneTwoSamples/build/vignette.rds |binary OneTwoSamples-1.2-0/OneTwoSamples/inst/CITATION |only OneTwoSamples-1.2-0/OneTwoSamples/inst/_pkgdown.yml |only OneTwoSamples-1.2-0/OneTwoSamples/inst/doc/OneTwoSamples.pdf |binary OneTwoSamples-1.2-0/OneTwoSamples/man/OneTwoSamples-package.Rd | 2 OneTwoSamples-1.2-0/OneTwoSamples/man/one_sample.Rd | 2 OneTwoSamples-1.2-0/OneTwoSamples/tests/testthat |only OneTwoSamples-1.2-0/OneTwoSamples/tests/testthat.R |only 14 files changed, 172 insertions(+), 21 deletions(-)
Title: Deciphering Biological Networks with Patterned Heterogeneous
Measurements
Description: A modeling tool dedicated to biological network modeling (Bertrand and others 2020, <doi:10.1093/bioinformatics/btaa855>). It allows for single or joint modeling of, for instance, genes and proteins. It starts with the selection of the actors that will be the used in the reverse engineering upcoming step. An actor can be included in that selection based on its differential measurement (for instance gene expression or protein abundance) or on its time course profile. Wrappers for actors clustering functions and cluster analysis are provided. It also allows reverse engineering of biological networks taking into account the observed time course patterns of the actors. Many inference functions are provided and dedicated to get specific features for the inferred network such as sparsity, robust links, high confidence links or stable through resampling links. Some simulation and prediction tools are also available for cascade networks (Jung and others 2014, <doi:10.1093/bioinformati [...truncated...]
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between Patterns versions 1.6 dated 2025-07-02 and 1.7 dated 2025-09-15
DESCRIPTION | 24 +++-- MD5 | 49 +++++++---- NAMESPACE | 1 NEWS.md | 6 + R/Patterns-package.R | 4 R/datasets.R | 30 +++++++ R/omics_array.R | 5 - README.md | 147 ++++++++++++++++++----------------- data/datalist | 9 +- data/jetsetscores.RData |only inst/CITATION | 6 + inst/_pkgdown.yml |only inst/doc/ExampleCLL.Rmd | 2 inst/doc/ExampleCLL.html | 6 - inst/doc/IntroPatterns.Rmd | 2 inst/doc/IntroPatterns.html | 6 - man/Patterns-package.Rd | 4 man/jetsetscores.Rd |only man/probeMerge-omics_array-method.Rd | 5 - tests |only vignettes/ExampleCLL.Rmd | 2 vignettes/IntroPatterns.Rmd | 2 22 files changed, 188 insertions(+), 122 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva [aut, cre],
Paula Brito [aut]
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>
Diff between MAINT.Data versions 2.7.1 dated 2023-04-04 and 2.7.2 dated 2025-09-15
CHANGELOG | 6 ++++ DESCRIPTION | 14 +++++----- MD5 | 58 +++++++++++++++++++++--------------------- R/ClasGenMetDef.R | 8 ++--- R/IdtMclust_methods.R | 48 ++++++++++++++++++++++++++-------- R/IdtOutl_methods.R | 42 +++++++++++++++++++++--------- R/fasttle.R | 7 ++--- R/lqda.R | 7 +---- man/IdtOutl-methods.Rd | 6 +++- man/MAINT.Data-package.Rd | 4 +- man/RepLOptim.Rd | 2 - man/RobEstControl-class.Rd | 20 +++++++------- man/Robda-methods.Rd | 2 - man/fasttle-methods.Rd | 2 - man/pcoordplot-methos.Rd | 8 ++++- src/AdMatAlgFoo.h | 2 + src/AuxFoo.cpp | 1 src/AuxFoo.h | 2 + src/CEMGauss.cpp | 1 src/MDataGaussLogLik.h | 2 + src/Makevars | 2 - src/MinMaxEgval.h | 2 + src/fulltle.cpp | 1 src/msnCP_Aux.cpp | 3 +- src/msnCP_Aux.h | 1 src/msnCP_dev.h | 2 + src/msnCP_dev_grad.h | 2 + src/registerDynamicSimbol.cpp | 2 - src/sampleint.h | 3 +- src/tle.h | 5 +-- 30 files changed, 164 insertions(+), 101 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre] ,
Dean Attali [aut],
James Craig [aut] ,
Benjamin Rich [aut] ,
Michael Sachs [aut]
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.3.1 dated 2024-01-15 and 0.3.2 dated 2025-09-15
ggquickeda-0.3.1/ggquickeda/inst/shinyapp/rsconnect |only ggquickeda-0.3.2/ggquickeda/DESCRIPTION | 25 ggquickeda-0.3.2/ggquickeda/MD5 | 53 ggquickeda-0.3.2/ggquickeda/NAMESPACE | 4 ggquickeda-0.3.2/ggquickeda/NEWS.md | 26 ggquickeda-0.3.2/ggquickeda/R/ggcontinuousexpdist.R | 1264 ++++++++-- ggquickeda-0.3.2/ggquickeda/R/ggkm.R | 6 ggquickeda-0.3.2/ggquickeda/R/ggkmrisktable.R | 217 + ggquickeda-0.3.2/ggquickeda/R/gglogisticexpdist.R | 1065 ++++++-- ggquickeda-0.3.2/ggquickeda/R/ggresponseexpdist.R |only ggquickeda-0.3.2/ggquickeda/build/vignette.rds |binary ggquickeda-0.3.2/ggquickeda/inst/doc/AdditionalPlotsStats.html | 22 ggquickeda-0.3.2/ggquickeda/inst/doc/Visualizing_Summary_Data.html | 23 ggquickeda-0.3.2/ggquickeda/inst/doc/app.html | 2 ggquickeda-0.3.2/ggquickeda/inst/doc/ggquickeda.html | 16 ggquickeda-0.3.2/ggquickeda/inst/shinyapp/global.R | 26 ggquickeda-0.3.2/ggquickeda/inst/shinyapp/server.R | 311 +- ggquickeda-0.3.2/ggquickeda/inst/shinyapp/ui.R | 28 ggquickeda-0.3.2/ggquickeda/man/geom_km.Rd | 71 ggquickeda-0.3.2/ggquickeda/man/geom_kmband.Rd | 71 ggquickeda-0.3.2/ggquickeda/man/geom_kmticks.Rd | 71 ggquickeda-0.3.2/ggquickeda/man/ggcontinuousexpdist.Rd | 136 - ggquickeda-0.3.2/ggquickeda/man/ggkmrisktable.Rd | 41 ggquickeda-0.3.2/ggquickeda/man/gglogisticexpdist.Rd | 169 + ggquickeda-0.3.2/ggquickeda/man/ggresponseexpdist.Rd |only ggquickeda-0.3.2/ggquickeda/man/stat_km.Rd | 41 ggquickeda-0.3.2/ggquickeda/man/stat_kmband.Rd | 37 ggquickeda-0.3.2/ggquickeda/man/stat_kmticks.Rd | 43 28 files changed, 2999 insertions(+), 769 deletions(-)
Title: Conformal Inference Tools for Regression with Multivariate
Response
Description: It computes full conformal, split conformal and multi-split conformal
prediction regions when the response variable is multivariate (i.e.
dimension is greater than one). Moreover, the package also contains
plot functions to visualize the output of the full and split conformal
functions. To guarantee consistency, the package structure mimics the
univariate package 'conformalInference' by Ryan Tibshirani.
See Lei, G’sell, Rinaldo, Tibshirani, & Wasserman (2018) <doi:10.1080/01621459.2017.1307116>
for full and split conformal prediction in regression, and Barber, Candès,
Ramdas, & Tibshirani (2023) <doi:10.1214/23-AOS2276> for extensions beyond exchangeability.
Author: Jacopo Diquigiovanni [aut, ths],
Matteo Fontana [aut, ths],
Aldo Solari [aut, ths],
Simone Vantini [aut, ths],
Paolo Vergottini [aut, cre],
Ryan Tibshirani [ctb]
Maintainer: Paolo Vergottini <paolo.vergottini@gmail.com>
This is a re-admission after prior archival of version 1.1.1 dated 2022-03-16
Diff between conformalInference.multi versions 1.1.1 dated 2022-03-16 and 1.1.2 dated 2025-09-15
conformalInference.multi-1.1.1/conformalInference.multi/NEWS.md |only conformalInference.multi-1.1.1/conformalInference.multi/R/bikeMi.R |only conformalInference.multi-1.1.1/conformalInference.multi/R/common.R |only conformalInference.multi-1.1.1/conformalInference.multi/R/jackplus.R |only conformalInference.multi-1.1.1/conformalInference.multi/R/msplit.R |only conformalInference.multi-1.1.1/conformalInference.multi/R/plot.multidim.R |only conformalInference.multi-1.1.1/conformalInference.multi/R/s.regression.R |only conformalInference.multi-1.1.1/conformalInference.multi/data |only conformalInference.multi-1.1.1/conformalInference.multi/inst/examples/ex.jackplus.R |only conformalInference.multi-1.1.1/conformalInference.multi/man/bikeMi.Rd |only conformalInference.multi-1.1.1/conformalInference.multi/man/conformal.multidim.jackplus.Rd |only conformalInference.multi-1.1.2/conformalInference.multi/DESCRIPTION | 49 conformalInference.multi-1.1.2/conformalInference.multi/LICENSE |only conformalInference.multi-1.1.2/conformalInference.multi/MD5 | 62 - conformalInference.multi-1.1.2/conformalInference.multi/NAMESPACE | 2 conformalInference.multi-1.1.2/conformalInference.multi/R/check.R | 500 ++++------ conformalInference.multi-1.1.2/conformalInference.multi/R/conformalInference.multi-package.R | 33 conformalInference.multi-1.1.2/conformalInference.multi/R/full.R | 384 +++---- conformalInference.multi-1.1.2/conformalInference.multi/R/glmnet.R | 288 ++--- conformalInference.multi-1.1.2/conformalInference.multi/R/interval.build.R |only conformalInference.multi-1.1.2/conformalInference.multi/R/lm.R | 120 +- conformalInference.multi-1.1.2/conformalInference.multi/R/mean.R | 98 + conformalInference.multi-1.1.2/conformalInference.multi/R/multisplit.R |only conformalInference.multi-1.1.2/conformalInference.multi/R/plot.full.R |only conformalInference.multi-1.1.2/conformalInference.multi/R/plot.split.R |only conformalInference.multi-1.1.2/conformalInference.multi/R/s_regression.R |only conformalInference.multi-1.1.2/conformalInference.multi/R/split.R | 382 +++---- conformalInference.multi-1.1.2/conformalInference.multi/README.md |only conformalInference.multi-1.1.2/conformalInference.multi/build |only conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.full.R | 48 conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.msplit.R | 50 - conformalInference.multi-1.1.2/conformalInference.multi/inst/examples/ex.split.R | 50 - conformalInference.multi-1.1.2/conformalInference.multi/man/computing_s_regression.Rd | 29 conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.full.Rd | 46 conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.msplit.Rd | 152 +-- conformalInference.multi-1.1.2/conformalInference.multi/man/conformal.multidim.split.Rd | 58 - conformalInference.multi-1.1.2/conformalInference.multi/man/conformalInference.multi-package.Rd | 31 conformalInference.multi-1.1.2/conformalInference.multi/man/glmnet.funs.Rd | 11 conformalInference.multi-1.1.2/conformalInference.multi/man/lm_multi.Rd | 29 conformalInference.multi-1.1.2/conformalInference.multi/man/mean_multi.Rd | 28 conformalInference.multi-1.1.2/conformalInference.multi/man/plot_multidim.Rd | 77 - conformalInference.multi-1.1.2/conformalInference.multi/man/plot_multidim_full.Rd |only 42 files changed, 1184 insertions(+), 1343 deletions(-)
More information about conformalInference.multi at CRAN
Permanent link
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Penalized and non-penalized maximum likelihood estimation of smooth
transition vector autoregressive models with various types of transition weight
functions, conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, counterfactual analysis, and
computation of impulse response functions, generalized impulse response functions,
generalized forecast error variance decompositions, as well as historical
decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2025) <doi:10.1016/j.jedc.2025.105162>,
Savi Virolainen (2025) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between sstvars versions 1.2.1 dated 2025-06-19 and 1.2.2 dated 2025-09-15
DESCRIPTION | 10 ++-- MD5 | 84 +++++++++++++++++++------------------- NEWS.md | 8 +++ R/MAINest.R | 4 - R/STVARconstruction.R | 75 ++++++++++++++++++++++++---------- R/argumentChecks.R | 4 - R/data.R | 8 +-- R/geneticAlgorithm.R | 13 ++--- R/loglikelihood.R | 4 - README.md | 4 - configure | 14 +++--- data/usacpu.rda |binary inst/doc/sstvars-vignette.Rnw | 89 ++++++++++++++++++++--------------------- inst/doc/sstvars-vignette.pdf |binary man/GAfit.Rd | 6 +- man/STVAR.Rd | 4 - man/alt_stvar.Rd | 4 - man/change_regime.Rd | 4 - man/check_params.Rd | 4 - man/diagnostic_plot.Rd | 4 - man/fitSTVAR.Rd | 4 - man/get_alpha_mt.Rd | 4 - man/get_residuals.Rd | 4 - man/in_paramspace.Rd | 4 - man/iterate_more.Rd | 4 - man/loglikelihood.Rd | 4 - man/n_params.Rd | 4 - man/plot_struct_shocks.Rd | 4 - man/predict.stvar.Rd | 4 - man/profile_logliks.Rd | 4 - man/random_covmat.Rd | 2 man/random_ind.Rd | 6 +- man/reform_constrained_pars.Rd | 4 - man/regime_distance.Rd | 4 - man/simulate.stvar.Rd | 4 - man/simulate_from_regime.Rd | 4 - man/simulate_stvar_int.Rd | 4 - man/smart_ind.Rd | 6 +- man/standard_errors.Rd | 4 - man/swap_parametrization.Rd | 4 - man/usacpu.Rd | 8 +-- vignettes/refs.bib | 8 ++- vignettes/sstvars-vignette.Rnw | 89 ++++++++++++++++++++--------------------- 43 files changed, 286 insertions(+), 244 deletions(-)
Title: Access South Korean Data via Public APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including
'Nager.Date', 'World Bank API', and 'REST Countries API', retrieving real-time or historical
data related to South Korea, such as holidays, economic indicators, and international
demographic and geopolitical indicators. Additionally, the package includes one of the largest
curated collections of open datasets focused on South Korea, covering topics such as public health
outbreaks, demographics, social surveys, elections, economic indicators, natural disasters,
administrative divisions, air quality, climate data, energy consumption, cultural information,
and financial markets. The package supports reproducible research and teaching by integrating
reliable international APIs and structured datasets from public, academic, and government sources.
For more information on the APIs, see:
'Nager.Date' <https://date.nager.at/Api>,
'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>,
[...truncated...]
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between SouthKoreAPIs versions 0.1.0 dated 2025-09-01 and 0.1.1 dated 2025-09-15
DESCRIPTION | 6 - MD5 | 103 +++++++++---------- NEWS.md |only R/data-documentation.R | 2 R/get_country_info_kr.R | 50 ++++----- R/get_southkorea_child_mortality.R | 2 R/get_southkorea_cpi.R | 2 R/get_southkorea_energy_use.R | 2 R/get_southkorea_gdp.R | 2 R/get_southkorea_holidays.R | 2 R/get_southkorea_hospital_beds.R | 2 R/get_southkorea_life_expectancy.R | 2 R/get_southkorea_literacy_rate.R | 2 R/get_southkorea_population.R | 2 R/get_southkorea_unemployment.R | 2 R/southkoreapis-package.R | 2 R/utils.R | 2 R/view_datasets_SouthKoreAPIs.R | 2 inst/CITATION | 2 inst/doc/SouthKoreAPIs_vignette.html | 5 man/get_country_info_kr.Rd | 18 --- tests/testthat/test-AutoOwnershipKorea_df.R | 2 tests/testthat/test-GasSales_Korea_tbl_df.R | 2 tests/testthat/test-HeptathlonSeoul1988_df.R | 2 tests/testthat/test-KOSPI200_list.R | 2 tests/testthat/test-KPopIdols_tbl_df.R | 2 tests/testthat/test-KoreanBoneDensity_df.R | 2 tests/testthat/test-KoreanElection2017_df.R | 2 tests/testthat/test-KoreanSocialSurvey_tbl_df.R | 2 tests/testthat/test-MERSKorea2015_list.R | 2 tests/testthat/test-NFIColumnNames_df.R | 2 tests/testthat/test-RegionalKorea_df.R | 2 tests/testthat/test-SeoulAdminAreas_sf.R | 2 tests/testthat/test-SeoulDistrictPop_df.R | 2 tests/testthat/test-SeoulH3Data_tbl_df.R | 2 tests/testthat/test-SeoulMosquito_tbl_df.R | 2 tests/testthat/test-SolarRadiation_df.R | 2 tests/testthat/test-SouthKoreaBirths_tbl_df.R | 2 tests/testthat/test-SouthKoreaCovid19_tbl_df.R | 2 tests/testthat/test-demographicsKR_tbl_df.R | 2 tests/testthat/test-get_country_info_kr.R | 19 ++- tests/testthat/test-get_southkorea_child_mortality.R | 2 tests/testthat/test-get_southkorea_cpi.R | 2 tests/testthat/test-get_southkorea_energy_use.R | 2 tests/testthat/test-get_southkorea_gdp.R | 2 tests/testthat/test-get_southkorea_holidays.R | 2 tests/testthat/test-get_southkorea_hospital_beds.R | 2 tests/testthat/test-get_southkorea_life_expectancy.R | 2 tests/testthat/test-get_southkorea_literacy_rate.R | 2 tests/testthat/test-get_southkorea_population.R | 2 tests/testthat/test-get_southkorea_unemployment.R | 2 tests/testthat/test-migrationflows_tbl_df.R | 2 tests/testthat/test-view_datasets_SouthKoreAPIs.R | 2 53 files changed, 147 insertions(+), 146 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.6.2 dated 2023-08-08 and 2.6.3 dated 2025-09-15
noctua-2.6.2/noctua/man/Query.Rd |only noctua-2.6.2/noctua/man/backend_dbplyr_v2.Rd |only noctua-2.6.2/noctua/man/dbClearResult.Rd |only noctua-2.6.2/noctua/man/dbColumnInfo.Rd |only noctua-2.6.2/noctua/man/dbDataType.Rd |only noctua-2.6.2/noctua/man/dbDisconnect.Rd |only noctua-2.6.2/noctua/man/dbExistsTable.Rd |only noctua-2.6.2/noctua/man/dbFetch.Rd |only noctua-2.6.2/noctua/man/dbGetInfo.Rd |only noctua-2.6.2/noctua/man/dbGetPartition.Rd |only noctua-2.6.2/noctua/man/dbGetQuery.Rd |only noctua-2.6.2/noctua/man/dbGetStatement.Rd |only noctua-2.6.2/noctua/man/dbGetTables.Rd |only noctua-2.6.2/noctua/man/dbHasCompleted.Rd |only noctua-2.6.2/noctua/man/dbIsValid.Rd |only noctua-2.6.2/noctua/man/dbListFields.Rd |only noctua-2.6.2/noctua/man/dbQuote.Rd |only noctua-2.6.2/noctua/man/dbRemoveTable.Rd |only noctua-2.6.2/noctua/man/dbShow.Rd |only noctua-2.6.2/noctua/man/dbStatistics.Rd |only noctua-2.6.3/noctua/DESCRIPTION | 13 noctua-2.6.3/noctua/MD5 | 130 - noctua-2.6.3/noctua/NAMESPACE | 14 noctua-2.6.3/noctua/NEWS.md | 11 noctua-2.6.3/noctua/R/Connection.R | 922 +++------- noctua-2.6.3/noctua/R/DataTypes.R | 126 - noctua-2.6.3/noctua/R/Driver.R | 152 - noctua-2.6.3/noctua/R/File_Parser.R | 305 ++- noctua-2.6.3/noctua/R/Options.R | 293 ++- noctua-2.6.3/noctua/R/Result.R | 339 +-- noctua-2.6.3/noctua/R/Table.R | 456 +++- noctua-2.6.3/noctua/R/View.R | 294 +-- noctua-2.6.3/noctua/R/athena_low_api.R | 99 - noctua-2.6.3/noctua/R/dplyr_integration.R | 293 +-- noctua-2.6.3/noctua/R/fetch_utils.R | 2 noctua-2.6.3/noctua/R/sql_translate_env.R | 202 +- noctua-2.6.3/noctua/R/utils.R | 246 +- noctua-2.6.3/noctua/R/zzz.R | 34 noctua-2.6.3/noctua/README.md | 2 noctua-2.6.3/noctua/build/vignette.rds |binary noctua-2.6.3/noctua/inst/doc/aws_athena_query_caching.html | 1 noctua-2.6.3/noctua/inst/doc/aws_athena_unload.html | 1 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.R | 2 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.Rmd | 2 noctua-2.6.3/noctua/inst/doc/aws_s3_backend.html | 5 noctua-2.6.3/noctua/inst/doc/changing_backend_file_parser.html | 1 noctua-2.6.3/noctua/inst/doc/convert_and_save_cost.Rmd | 2 noctua-2.6.3/noctua/inst/doc/convert_and_save_cost.html | 3 noctua-2.6.3/noctua/inst/doc/getting_started.html | 1 noctua-2.6.3/noctua/inst/doc/how_to_retry.html | 1 noctua-2.6.3/noctua/man/AthenaConnection.Rd | 133 + noctua-2.6.3/noctua/man/AthenaDriver.Rd | 14 noctua-2.6.3/noctua/man/AthenaListObjects.Rd |only noctua-2.6.3/noctua/man/AthenaPreviewObject.Rd |only noctua-2.6.3/noctua/man/AthenaResult.Rd |only noctua-2.6.3/noctua/man/AthenaWriteTables.Rd | 16 noctua-2.6.3/noctua/man/assume_role.Rd | 4 noctua-2.6.3/noctua/man/athena.Rd | 4 noctua-2.6.3/noctua/man/backend_dbplyr.Rd |only noctua-2.6.3/noctua/man/backend_dbplyr_v1.Rd | 3 noctua-2.6.3/noctua/man/dbConnect-AthenaDriver-method.Rd | 71 noctua-2.6.3/noctua/man/dbConvertTable.Rd | 47 noctua-2.6.3/noctua/man/dbListTables.Rd | 4 noctua-2.6.3/noctua/man/db_compute.Rd | 36 noctua-2.6.3/noctua/man/db_connection_describe.Rd | 2 noctua-2.6.3/noctua/man/db_copy_to.Rd | 8 noctua-2.6.3/noctua/man/db_desc.Rd | 2 noctua-2.6.3/noctua/man/dbplyr_edition.Rd | 4 noctua-2.6.3/noctua/man/noctua-package.Rd | 3 noctua-2.6.3/noctua/man/noctua_options.Rd | 20 noctua-2.6.3/noctua/man/session_token.Rd | 2 noctua-2.6.3/noctua/man/sqlCreateTable.Rd | 4 noctua-2.6.3/noctua/man/sqlData.Rd | 4 noctua-2.6.3/noctua/man/sql_translate_env.Rd | 12 noctua-2.6.3/noctua/man/work_group.Rd | 21 noctua-2.6.3/noctua/tests/testthat/test-dplyr-compute.R | 49 noctua-2.6.3/noctua/vignettes/aws_s3_backend.Rmd | 2 noctua-2.6.3/noctua/vignettes/convert_and_save_cost.Rmd | 2 78 files changed, 2428 insertions(+), 1991 deletions(-)
Title: Standard Dataset Manager for Observational Medical Outcomes
Partnership Common Data Model Sample Datasets
Description: Facilitates access to sample datasets from the 'EunomiaDatasets' repository (<https://github.com/ohdsi/EunomiaDatasets>).
Author: Frank DeFalco [aut, cre],
Martijn Schuemie [aut],
Anthony Sena [aut],
Natthawut Adulyanukosol [aut],
Star Liu [aut],
Adam Black [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Frank DeFalco <fdefalco@ohdsi.org>
Diff between Eunomia versions 2.0.0 dated 2024-04-23 and 2.1.0 dated 2025-09-15
DESCRIPTION | 10 MD5 | 46 +- NAMESPACE | 34 +- NEWS.md | 78 ++-- R/Cohorts.R | 155 ++++----- R/Connection.R | 329 ++++++++++---------- R/Eunomia.R | 46 +- R/EunomiaData.R | 582 ++++++++++++++++++------------------- README.md | 156 ++++----- inst/settings/CohortsToCreate.csv | 10 inst/sql/CreateCohortTable.sql | 104 +++--- man/Eunomia-package.Rd | 74 ++-- man/createCohorts.Rd | 58 +-- man/downloadEunomiaData.Rd | 80 ++--- man/exportDataFiles.Rd | 62 +-- man/extractLoadData.Rd | 92 ++--- man/getDatabaseFile.Rd | 120 +++---- man/getEunomiaConnectionDetails.Rd | 54 +-- man/loadDataFiles.Rd | 80 ++--- tests/testthat.R | 6 tests/testthat/setup.R | 24 - tests/testthat/test-DBI.R | 88 ++--- tests/testthat/test-EunomiaData.R | 70 ++-- tests/testthat/test-basic.R | 171 +++++----- 24 files changed, 1266 insertions(+), 1263 deletions(-)
Title: 'StreamCatTools'
Description: Tools for using the 'StreamCat' and 'LakeCat' API and
interacting with the 'StreamCat' and 'LakeCat' database.
Convenience functions in the package wrap the API for 'StreamCat'
on <https://api.epa.gov/StreamCat/streams/metrics>.
Author: Marc Weber [aut, cre],
Ryan Hill [ctb],
Travis Hudson [ctb],
Allen Brookes [ctb],
David Rebhuhn [ctb],
Zachary Smith [ctb]
Maintainer: Marc Weber <weber.marc@epa.gov>
Diff between StreamCatTools versions 0.6.0 dated 2025-09-02 and 0.7.0 dated 2025-09-15
DESCRIPTION | 15 MD5 | 30 NEWS.md | 30 R/lc_get_data.R | 74 - R/lc_get_params.R | 2 R/sc_get_data.R | 39 - R/sc_get_params.R | 2 README.md | 27 inst/doc/Applications.html | 34 inst/doc/Introduction.html | 1338 +++++++++++++++++++++--------------- inst/doc/LakeCat.R | 2 inst/doc/LakeCat.Rmd | 2 inst/doc/LakeCat.html | 5 tests/testthat/test-lc_get_params.R | 11 tests/testthat/test-sc_get_params.R | 4 vignettes/LakeCat.Rmd | 2 16 files changed, 909 insertions(+), 708 deletions(-)
More information about StreamCatTools at CRAN
Permanent link
Title: Creates and Plots P-Value Functions, S-Value Functions,
Confidence Distributions and Confidence Densities
Description: Contains functions to compute and plot confidence distributions, confidence densities, p-value functions and s-value (surprisal) functions for several commonly used estimates. Instead of just calculating one p-value and one confidence interval, p-value functions display p-values and confidence intervals for many levels thereby allowing to gauge the compatibility of several parameter values with the data. These methods are discussed by Infanger D, Schmidt-Trucksäss A. (2019) <doi:10.1002/sim.8293>; Poole C. (1987) <doi:10.2105/AJPH.77.2.195>; Schweder T, Hjort NL. (2002) <doi:10.1111/1467-9469.00285>; Bender R, Berg G, Zeeb H. (2005) <doi:10.1002/bimj.200410104> ; Singh K, Xie M, Strawderman WE. (2007) <doi:10.1214/074921707000000102>; Rothman KJ, Greenland S, Lash TL. (2008, ISBN:9781451190052); Amrhein V, Trafimow D, Greenland S. (2019) <doi:10.1080/00031305.2018.1543137>; Greenland S. (2019) <doi:10.1080/00031305.2018.1529625> and Rafi Z, Gre [...truncated...]
Author: Denis Infanger [aut, cre]
Maintainer: Denis Infanger <denis.infanger@unibas.ch>
Diff between pvaluefunctions versions 1.6.2 dated 2021-11-30 and 1.6.3 dated 2025-09-15
DESCRIPTION | 9 MD5 | 16 NEWS.md | 6 R/confidence_distributions.R | 36 build/vignette.rds |binary inst/doc/pvaluefun.R | 10 inst/doc/pvaluefun.Rmd | 4 inst/doc/pvaluefun.html | 1615 ++++++++++++++++++++++++++----------------- vignettes/pvaluefun.Rmd | 4 9 files changed, 1058 insertions(+), 642 deletions(-)
More information about pvaluefunctions at CRAN
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Title: The Extreme Learning Machine Algorithm
Description: Training and predict functions for Single Hidden-layer Feedforward Neural Networks (SLFN) using the Extreme Learning Machine (ELM) algorithm. The ELM algorithm differs from the traditional gradient-based algorithms for very short training times (it doesn't need any iterative tuning, this makes learning time very fast) and there is no need to set any other parameters like learning rate, momentum, epochs, etc. This is a reimplementation of the 'elmNN' package using 'RcppArmadillo' after the 'elmNN' package was archived. For more information, see "Extreme learning machine: Theory and applications" by Guang-Bin Huang, Qin-Yu Zhu, Chee-Kheong Siew (2006), Elsevier B.V, <doi:10.1016/j.neucom.2005.12.126>.
Author: Lampros Mouselimis [aut, cre] ,
Alberto Gosso [aut],
Edwin de Jonge [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between elmNNRcpp versions 1.0.4 dated 2022-01-27 and 1.0.5 dated 2025-09-15
DESCRIPTION | 19 MD5 | 18 NEWS.md | 7 README.md | 5 build/vignette.rds |binary inst/doc/extreme_learning_machine.R | 198 +++---- inst/doc/extreme_learning_machine.html | 827 +++++++++++++++++++++------------ src/Makevars | 4 src/Makevars.win | 6 src/utils.cpp | 1 10 files changed, 662 insertions(+), 423 deletions(-)
Title: Open Access to Cryptocurrency Market Data, Sentiment Indicators
and Interactive Charts
Description: This high-level API client provides open access to cryptocurrency market data, sentiment indicators, and interactive charting tools.
The data is sourced from major cryptocurrency exchanges via 'curl' and returned in 'xts'-format. The data comes in open, high, low, and close (OHLC) format with flexible granularity, ranging from seconds to months.
This flexibility makes it ideal for developing and backtesting trading strategies or conducting detailed market analysis.
Author: Serkan Korkmaz [cre, aut, ctb, cph] ,
Jonas Cuzulan Hirani [ctb]
Maintainer: Serkan Korkmaz <serkor1@duck.com>
Diff between cryptoQuotes versions 1.3.2 dated 2024-11-07 and 1.3.3 dated 2025-09-15
cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote(deficiency)-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote(deficieny)-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-unnamed-chunk-3-1.png |only cryptoQuotes-1.3.3/cryptoQuotes/DESCRIPTION | 13 cryptoQuotes-1.3.3/cryptoQuotes/MD5 | 207 ++-- cryptoQuotes-1.3.3/cryptoQuotes/NAMESPACE | 1 cryptoQuotes-1.3.3/cryptoQuotes/NEWS.md | 74 - cryptoQuotes-1.3.3/cryptoQuotes/R/ATOM.R | 4 cryptoQuotes-1.3.3/cryptoQuotes/R/FUN.R | 33 cryptoQuotes-1.3.3/cryptoQuotes/R/api_binance.R | 154 +-- cryptoQuotes-1.3.3/cryptoQuotes/R/api_bitmart.R | 118 -- cryptoQuotes-1.3.3/cryptoQuotes/R/api_bybit.R | 132 +- cryptoQuotes-1.3.3/cryptoQuotes/R/api_cmc.R |only cryptoQuotes-1.3.3/cryptoQuotes/R/api_cryptocom.R | 106 -- cryptoQuotes-1.3.3/cryptoQuotes/R/api_huobi.R | 135 +- cryptoQuotes-1.3.3/cryptoQuotes/R/api_kraken.R | 243 ++-- cryptoQuotes-1.3.3/cryptoQuotes/R/api_kucoin.R | 226 ++-- cryptoQuotes-1.3.3/cryptoQuotes/R/api_mexc.R | 111 +- cryptoQuotes-1.3.3/cryptoQuotes/R/available_exchanges.R | 19 cryptoQuotes-1.3.3/cryptoQuotes/R/available_intervals.R | 34 cryptoQuotes-1.3.3/cryptoQuotes/R/available_tickers.R | 43 cryptoQuotes-1.3.3/cryptoQuotes/R/chart.R | 125 -- cryptoQuotes-1.3.3/cryptoQuotes/R/chart_bollingerbands.R | 31 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_donchian.R | 21 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_event.R | 17 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_fgi.R | 15 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_lsr.R | 25 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_ma.R | 196 +-- cryptoQuotes-1.3.3/cryptoQuotes/R/chart_macd.R | 82 - cryptoQuotes-1.3.3/cryptoQuotes/R/chart_quote.R | 101 -- cryptoQuotes-1.3.3/cryptoQuotes/R/chart_rsi.R | 33 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_smi.R | 45 cryptoQuotes-1.3.3/cryptoQuotes/R/chart_volume.R | 64 - cryptoQuotes-1.3.3/cryptoQuotes/R/get_fgi.R | 27 cryptoQuotes-1.3.3/cryptoQuotes/R/get_fundingrate.R | 40 cryptoQuotes-1.3.3/cryptoQuotes/R/get_lsratio.R | 102 -- cryptoQuotes-1.3.3/cryptoQuotes/R/get_mcap.R |only cryptoQuotes-1.3.3/cryptoQuotes/R/get_openinterest.R | 67 - cryptoQuotes-1.3.3/cryptoQuotes/R/get_quote.R | 86 - cryptoQuotes-1.3.3/cryptoQuotes/R/helper.R | 324 ++---- cryptoQuotes-1.3.3/cryptoQuotes/R/store_xts.R | 27 cryptoQuotes-1.3.3/cryptoQuotes/R/utils.R | 132 +- cryptoQuotes-1.3.3/cryptoQuotes/R/zzz.R | 18 cryptoQuotes-1.3.3/cryptoQuotes/README.md | 151 +-- cryptoQuotes-1.3.3/cryptoQuotes/build/vignette.rds |binary cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/cryptoQuotes.html | 413 ++++---- cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/custom_indicators.html | 435 ++++---- cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/usecase.R | 22 cryptoQuotes-1.3.3/cryptoQuotes/inst/doc/usecase.html | 322 +++--- cryptoQuotes-1.3.3/cryptoQuotes/man/add_event.Rd | 22 cryptoQuotes-1.3.3/cryptoQuotes/man/alma.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/available_exchanges.Rd | 2 cryptoQuotes-1.3.3/cryptoQuotes/man/available_tickers.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/bollinger_bands.Rd | 8 cryptoQuotes-1.3.3/cryptoQuotes/man/calibrate_window.Rd | 5 cryptoQuotes-1.3.3/cryptoQuotes/man/chart.Rd | 19 cryptoQuotes-1.3.3/cryptoQuotes/man/dema.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/donchian_channel.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/ema.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/evwma.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_FUN.R | 5 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_MAindicator.R | 2 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_addEvents.R | 22 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_availableExchanges.R | 2 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_charting.R | 8 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_klinechart.R | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_mktCap.R |only cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_ohlcchart.R | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/examples/scr_plinechart.R | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-3-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-4-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-5-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-7-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/figures/NEWS-unnamed-chunk-8-1.png |only cryptoQuotes-1.3.3/cryptoQuotes/man/figures/README-chartquote-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/figures/README-unnamed-chunk-1-1.png |binary cryptoQuotes-1.3.3/cryptoQuotes/man/get_lsratio.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/get_mktcap.Rd |only cryptoQuotes-1.3.3/cryptoQuotes/man/get_openinterest.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/get_quote.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/hma.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/kline.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/macd.Rd | 10 cryptoQuotes-1.3.3/cryptoQuotes/man/ohlc.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/pline.Rd | 4 cryptoQuotes-1.3.3/cryptoQuotes/man/remove_bound.Rd | 5 cryptoQuotes-1.3.3/cryptoQuotes/man/rsi.Rd | 10 cryptoQuotes-1.3.3/cryptoQuotes/man/sma.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/smi.Rd | 18 cryptoQuotes-1.3.3/cryptoQuotes/man/split_window.Rd | 5 cryptoQuotes-1.3.3/cryptoQuotes/man/volume.Rd | 8 cryptoQuotes-1.3.3/cryptoQuotes/man/vwap.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/wma.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/man/write_xts.Rd | 2 cryptoQuotes-1.3.3/cryptoQuotes/man/zlema.Rd | 6 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-CICD.R | 503 ++++------ cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-FGIndex.R | 49 cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-FUN.R | 97 - cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-availableTickers.R | 280 ++--- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-charting.R | 425 +++----- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getFNG.R | 59 - cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getFundingrate.R | 116 +- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getLSRatio.R | 160 +-- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getOpeninterest.R | 109 +- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-getQuote.R | 295 ++--- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-globalmktcap.R |only cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-infer_interval.R | 197 +-- cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-is-date.R | 54 - cryptoQuotes-1.3.3/cryptoQuotes/tests/testthat/test-store_xts.R | 65 - 109 files changed, 3397 insertions(+), 3839 deletions(-)
Title: Extracts the Backbone from Networks
Description: An implementation of methods for extracting a sparse unweighted network (i.e. a backbone)
from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network
(e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021
<doi:10.1038/s41598-021-03238-3>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 2.1.5 dated 2025-07-29 and 3.0.0 dated 2025-09-15
backbone-2.1.5/backbone/R/backbone.extract.R |only backbone-2.1.5/backbone/R/backbone.suggest.R |only backbone-2.1.5/backbone/R/bicm.R |only backbone-2.1.5/backbone/R/disparity.R |only backbone-2.1.5/backbone/R/fastball.R |only backbone-2.1.5/backbone/R/fdsm.R |only backbone-2.1.5/backbone/R/fixedcol.R |only backbone-2.1.5/backbone/R/fixedfill.R |only backbone-2.1.5/backbone/R/fixedrow.R |only backbone-2.1.5/backbone/R/global.R |only backbone-2.1.5/backbone/R/lans.R |only backbone-2.1.5/backbone/R/logit.R |only backbone-2.1.5/backbone/R/mlf.R |only backbone-2.1.5/backbone/R/osdsm.R |only backbone-2.1.5/backbone/R/pb.R |only backbone-2.1.5/backbone/R/sdsm.R |only backbone-2.1.5/backbone/R/sparsify.R |only backbone-2.1.5/backbone/R/write.narrative.R |only backbone-2.1.5/backbone/man/backbone.extract.Rd |only backbone-2.1.5/backbone/man/backbone.suggest.Rd |only backbone-2.1.5/backbone/man/figures/workflow.png |only backbone-2.1.5/backbone/man/frommatrix.Rd |only backbone-2.1.5/backbone/man/global.Rd |only backbone-2.1.5/backbone/man/logit.Rd |only backbone-2.1.5/backbone/man/loglikelihood_bicm.Rd |only backbone-2.1.5/backbone/man/loglikelihood_hessian_diag_bicm.Rd |only backbone-2.1.5/backbone/man/loglikelihood_prime_bicm.Rd |only backbone-2.1.5/backbone/man/osdsm.Rd |only backbone-2.1.5/backbone/man/pb.Rd |only backbone-2.1.5/backbone/man/sparsify.Rd |only backbone-2.1.5/backbone/man/sparsify.with.geometric.Rd |only backbone-2.1.5/backbone/man/sparsify.with.gspar.Rd |only backbone-2.1.5/backbone/man/sparsify.with.hypergeometric.Rd |only backbone-2.1.5/backbone/man/sparsify.with.jaccard.Rd |only backbone-2.1.5/backbone/man/sparsify.with.localdegree.Rd |only backbone-2.1.5/backbone/man/sparsify.with.lspar.Rd |only backbone-2.1.5/backbone/man/sparsify.with.meetmin.Rd |only backbone-2.1.5/backbone/man/sparsify.with.quadrilateral.Rd |only backbone-2.1.5/backbone/man/sparsify.with.simmelian.Rd |only backbone-2.1.5/backbone/man/sparsify.with.skeleton.Rd |only backbone-2.1.5/backbone/man/tomatrix.Rd |only backbone-2.1.5/backbone/man/trials.needed.Rd |only backbone-2.1.5/backbone/man/write.narrative.Rd |only backbone-3.0.0/backbone/DESCRIPTION | 25 backbone-3.0.0/backbone/MD5 | 112 - backbone-3.0.0/backbone/NAMESPACE | 20 backbone-3.0.0/backbone/NEWS.md | 11 backbone-3.0.0/backbone/R/backbone.R | 29 backbone-3.0.0/backbone/R/backbone_from_projection.R |only backbone-3.0.0/backbone/R/backbone_from_unweighted.R |only backbone-3.0.0/backbone/R/backbone_from_weighted.R |only backbone-3.0.0/backbone/R/depricated.R |only backbone-3.0.0/backbone/R/functions_projection.R |only backbone-3.0.0/backbone/R/functions_unweighted.R |only backbone-3.0.0/backbone/R/functions_weighted.R |only backbone-3.0.0/backbone/R/senate108.R |only backbone-3.0.0/backbone/R/utils.R | 516 +++-- backbone-3.0.0/backbone/README.md | 22 backbone-3.0.0/backbone/build/vignette.rds |binary backbone-3.0.0/backbone/data |only backbone-3.0.0/backbone/inst/doc/backbone.R | 115 - backbone-3.0.0/backbone/inst/doc/backbone.Rmd | 326 +-- backbone-3.0.0/backbone/inst/doc/backbone.html | 1008 +++++----- backbone-3.0.0/backbone/inst/doc/senate.R |only backbone-3.0.0/backbone/inst/doc/senate.Rmd |only backbone-3.0.0/backbone/inst/doc/senate.html |only backbone-3.0.0/backbone/inst/doc/unit_tests.R |only backbone-3.0.0/backbone/inst/doc/unit_tests.Rmd |only backbone-3.0.0/backbone/inst/doc/unit_tests.html |only backbone-3.0.0/backbone/inst/tinytest/test_backbone.R | 949 ++++++--- backbone-3.0.0/backbone/man/backbone.Rd | 34 backbone-3.0.0/backbone/man/backbone_from_projection.Rd |only backbone-3.0.0/backbone/man/backbone_from_unweighted.Rd |only backbone-3.0.0/backbone/man/backbone_from_weighted.Rd |only backbone-3.0.0/backbone/man/bicm.Rd | 10 backbone-3.0.0/backbone/man/disparity.Rd | 64 backbone-3.0.0/backbone/man/fastball.Rd | 2 backbone-3.0.0/backbone/man/fdsm.Rd | 81 backbone-3.0.0/backbone/man/fixedcol.Rd | 62 backbone-3.0.0/backbone/man/fixedfill.Rd | 63 backbone-3.0.0/backbone/man/fixedrow.Rd | 62 backbone-3.0.0/backbone/man/lans.Rd | 55 backbone-3.0.0/backbone/man/mlf.Rd | 64 backbone-3.0.0/backbone/man/sdsm.Rd | 77 backbone-3.0.0/backbone/man/senate108.Rd |only backbone-3.0.0/backbone/vignettes/backbone.Rmd | 326 +-- backbone-3.0.0/backbone/vignettes/backbone_bib.bib | 106 + backbone-3.0.0/backbone/vignettes/senate.Rmd |only backbone-3.0.0/backbone/vignettes/unit_tests.Rmd |only 89 files changed, 2340 insertions(+), 1799 deletions(-)
Title: An Interface to the 'Arctos' Database
Description: Performs requests to the 'Arctos' API to download data. Provides a
set of builder classes for performing complex requests, as well as a set of
simple functions for automating many common requests and workflows. More
information about 'Arctos' can be found in
Cicero et al. (2024) <doi:10.1371/journal.pone.0296478> or on their website
<https://arctosdb.org/>.
Author: Harlan R. Williams [aut, cre],
Marlon E. Cobos [aut],
Jocelyn P. Colella [aut],
Michelle S. Koo [aut],
Vijay Barve [aut]
Maintainer: Harlan R. Williams <harlanrhwilliams@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2025-07-15
Diff between ArctosR versions 0.1.1 dated 2025-07-15 and 0.1.2 dated 2025-09-15
DESCRIPTION | 16 +- MD5 | 63 +++++---- NAMESPACE | 1 NEWS.md | 7 + R/arctosr_doc.R | 22 +-- R/frontend.R | 248 ++++++++++++++++++++++++++------------ R/query.R | 11 + R/request.R | 2 R/utils.R | 4 README.md | 261 ++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/example.R |only inst/doc/example.Rmd |only inst/doc/example.html |only inst/doc/overview.R | 19 ++ inst/doc/overview.Rmd | 33 ++++- inst/doc/overview.html | 51 +++++--- man/ArctosR-package.Rd | 24 +-- man/check_for_status.Rd | 14 +- man/expand_column.Rd | 18 +- man/figures |only man/get_error_response.Rd | 14 +- man/get_last_response_url.Rd | 12 + man/get_query_parameters.Rd | 4 man/get_record_count.Rd | 8 - man/get_records.Rd | 19 ++ man/get_relationships.Rd |only man/get_result_parameters.Rd | 4 man/read_response_rds.Rd | 24 ++- man/response_data.Rd | 16 +- man/save_response_csv.Rd | 22 +-- man/save_response_rds.Rd | 21 +-- tests/testthat/test-frontend.R | 37 ++++- vignettes/example.Rmd |only vignettes/overview.Rmd | 33 ++++- 35 files changed, 627 insertions(+), 381 deletions(-)
Title: New Multicriteria Method: AHPGaussian
Description: Implements the Analytic Hierarchy Process (AHP) method using Gaussian normalization (AHPGaussian)
to derive the relative weights of the criteria and alternatives. It also includes functions for visualizing
the results and generating graphical outputs. Method as described in:
dos Santos, Marcos (2021) <doi:10.13033/ijahp.v13i1.833>.
Author: Cid Edson Povoas [aut, cre] ,
Marcos dos Santos [aut]
Maintainer: Cid Edson Povoas <cidedson@gmail.com>
Diff between AHPGaussian versions 0.1 dated 2023-06-14 and 0.1.3 dated 2025-09-15
AHPGaussian-0.1.3/AHPGaussian/ChangeLog |only AHPGaussian-0.1.3/AHPGaussian/DESCRIPTION | 56 ++--- AHPGaussian-0.1.3/AHPGaussian/LICENSE |only AHPGaussian-0.1.3/AHPGaussian/MD5 | 31 ++ AHPGaussian-0.1.3/AHPGaussian/NAMESPACE | 29 +- AHPGaussian-0.1.3/AHPGaussian/R/ahpgaussian.R | 50 ---- AHPGaussian-0.1.3/AHPGaussian/R/ahpgaussian.default.R |only AHPGaussian-0.1.3/AHPGaussian/R/globals.R | 5 AHPGaussian-0.1.3/AHPGaussian/R/plot.ahpgaussian.R |only AHPGaussian-0.1.3/AHPGaussian/R/summary.ahpgaussian.R |only AHPGaussian-0.1.3/AHPGaussian/R/utils-pipe.R |only AHPGaussian-0.1.3/AHPGaussian/README.md | 111 +++++----- AHPGaussian-0.1.3/AHPGaussian/data/cellphones.rda |only AHPGaussian-0.1.3/AHPGaussian/inst/WORDLIST | 8 AHPGaussian-0.1.3/AHPGaussian/man/ahpgaussian.Rd | 68 +----- AHPGaussian-0.1.3/AHPGaussian/man/ahpgaussian.default.Rd |only AHPGaussian-0.1.3/AHPGaussian/man/cellphones.Rd |only AHPGaussian-0.1.3/AHPGaussian/man/figures |only AHPGaussian-0.1.3/AHPGaussian/man/pipe.Rd |only AHPGaussian-0.1.3/AHPGaussian/man/plot.ahpgaussian.Rd |only AHPGaussian-0.1.3/AHPGaussian/man/print.summary.ahpgaussian.Rd |only AHPGaussian-0.1.3/AHPGaussian/man/summary.ahpgaussian.Rd |only AHPGaussian-0.1.3/AHPGaussian/tests/testthat |only AHPGaussian-0.1.3/AHPGaussian/tests/testthat.R |only AHPGaussian-0.1/AHPGaussian/R/AHPGaussian-class.R |only 25 files changed, 178 insertions(+), 180 deletions(-)
Title: Read, Write, Visualize and Manipulate PDB Files
Description: Provides tools to read, write, visualize Protein Data Bank (PDB) files and
perform some structural manipulations.
Author: Leonard Mada [cre, ctb],
Julien Ide [aut]
Maintainer: Leonard Mada <leo.mada@syonic.eu>
Diff between Rpdb versions 2.3.4 dated 2023-09-28 and 2.4.1 dated 2025-09-15
Rpdb-2.3.4/Rpdb/R/cryst1.R |only Rpdb-2.3.4/Rpdb/man/cryst1.Rd |only Rpdb-2.4.1/Rpdb/DESCRIPTION | 16 - Rpdb-2.4.1/Rpdb/MD5 | 119 ++++++----- Rpdb-2.4.1/Rpdb/NAMESPACE | 21 +- Rpdb-2.4.1/Rpdb/NEWS.md | 35 +++ Rpdb-2.4.1/Rpdb/R/Tools.R |only Rpdb-2.4.1/Rpdb/R/addAxes.R | 14 - Rpdb-2.4.1/Rpdb/R/addLabels.R | 5 Rpdb-2.4.1/Rpdb/R/atoms.R | 2 Rpdb-2.4.1/Rpdb/R/bond-angle-dihedral.R | 19 + Rpdb-2.4.1/Rpdb/R/cellProperties.R | 43 ++-- Rpdb-2.4.1/Rpdb/R/centres.R | 6 Rpdb-2.4.1/Rpdb/R/centres.roll.R |only Rpdb-2.4.1/Rpdb/R/coords.R | 78 +++++-- Rpdb-2.4.1/Rpdb/R/crystal.R |only Rpdb-2.4.1/Rpdb/R/distances.R | 121 +++++++----- Rpdb-2.4.1/Rpdb/R/elements.R | 2 Rpdb-2.4.1/Rpdb/R/format.R |only Rpdb-2.4.1/Rpdb/R/merge.coords.R | 20 +- Rpdb-2.4.1/Rpdb/R/mirror.R | 21 +- Rpdb-2.4.1/Rpdb/R/mirrorHelpers.R | 20 +- Rpdb-2.4.1/Rpdb/R/pdb.R | 49 ++-- Rpdb-2.4.1/Rpdb/R/proj.R |only Rpdb-2.4.1/Rpdb/R/range.coords.R | 2 Rpdb-2.4.1/Rpdb/R/read.pdb.R | 299 +++++++++++++++++++++--------- Rpdb-2.4.1/Rpdb/R/replicate.R | 27 +- Rpdb-2.4.1/Rpdb/R/rotation.R | 11 - Rpdb-2.4.1/Rpdb/R/rotationHelpers.R | 12 - Rpdb-2.4.1/Rpdb/R/split.pdb.R | 16 - Rpdb-2.4.1/Rpdb/R/toSymbols.R | 66 ++++-- Rpdb-2.4.1/Rpdb/R/translation.R | 50 ++--- Rpdb-2.4.1/Rpdb/R/translationHelpers.R | 14 - Rpdb-2.4.1/Rpdb/R/universalConstants.R | 2 Rpdb-2.4.1/Rpdb/R/viewAxis.R | 18 - Rpdb-2.4.1/Rpdb/R/visualize.R | 91 +++++---- Rpdb-2.4.1/Rpdb/R/wrap.R | 24 +- Rpdb-2.4.1/Rpdb/R/write.pdb.R | 49 ++-- Rpdb-2.4.1/Rpdb/R/xyz2abc.R | 141 +++++++------- Rpdb-2.4.1/Rpdb/man/addAxes.Rd | 6 Rpdb-2.4.1/Rpdb/man/addLabels.Rd | 2 Rpdb-2.4.1/Rpdb/man/cellProperties.Rd | 20 +- Rpdb-2.4.1/Rpdb/man/centres.Rd | 6 Rpdb-2.4.1/Rpdb/man/centres.ppRoll.Rd |only Rpdb-2.4.1/Rpdb/man/coords.Rd | 48 +++- Rpdb-2.4.1/Rpdb/man/crystal.Rd |only Rpdb-2.4.1/Rpdb/man/distances.Rd | 40 ++-- Rpdb-2.4.1/Rpdb/man/format.pdb.title.Rd |only Rpdb-2.4.1/Rpdb/man/merge.coords.Rd | 4 Rpdb-2.4.1/Rpdb/man/mirror.Rd | 18 + Rpdb-2.4.1/Rpdb/man/mirrorHelpers.Rd | 16 - Rpdb-2.4.1/Rpdb/man/pdb.Rd | 27 ++ Rpdb-2.4.1/Rpdb/man/proj.line3d.Rd |only Rpdb-2.4.1/Rpdb/man/read.pdb.Rd | 37 ++- Rpdb-2.4.1/Rpdb/man/replicate.Rd | 4 Rpdb-2.4.1/Rpdb/man/rotation.Rd | 8 Rpdb-2.4.1/Rpdb/man/rotationHelpers.Rd | 12 - Rpdb-2.4.1/Rpdb/man/split.pdb.Rd | 6 Rpdb-2.4.1/Rpdb/man/toSymbols.Rd | 7 Rpdb-2.4.1/Rpdb/man/translation.Rd | 10 - Rpdb-2.4.1/Rpdb/man/translationHelpers.Rd | 14 - Rpdb-2.4.1/Rpdb/man/viewAxis.Rd | 6 Rpdb-2.4.1/Rpdb/man/visualize.Rd | 4 Rpdb-2.4.1/Rpdb/man/wrap.Rd | 6 Rpdb-2.4.1/Rpdb/man/write.pdb.Rd | 4 Rpdb-2.4.1/Rpdb/man/xyz2abc.Rd | 24 +- 66 files changed, 1063 insertions(+), 679 deletions(-)
Title: Extension to 'ggplot2' for Plotting Stats
Description: Provides new statistics, new geometries and new positions for
'ggplot2' and a suite of functions to facilitate the creation of
statistical plots.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between ggstats versions 0.10.0 dated 2025-07-02 and 0.11.0 dated 2025-09-15
DESCRIPTION | 8 +- MD5 | 24 +++--- NEWS.md | 11 +++ R/ggcoef_model.R | 67 ++++++++++++++++--- inst/doc/ggcoef_model.R | 3 inst/doc/ggcoef_model.Rmd | 5 + inst/doc/ggcoef_model.html | 108 ++++++++++++++++--------------- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/ggcoef_model.Rd | 18 ++++- tests/testthat/test-ggcoef_model.R | 10 ++ vignettes/ggcoef_model.Rmd | 5 + 13 files changed, 181 insertions(+), 78 deletions(-)
Title: Consensus Pathway Analysis
Description: Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) <https://CRAN.R-project.org/package=CePa>.
Author: Ha Nguyen [aut, cre],
Phi Bya [aut],
Zeynab Maghsoudi [aut],
Tin Nguyen [fnd]
Maintainer: Ha Nguyen <hvn0006@auburn.edu>
Diff between RCPA versions 0.2.7 dated 2025-07-28 and 0.2.8 dated 2025-09-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/doc/RCPA.html | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Convenience Functions for Package 'lavaan'
Description: Affords an alternative, vector-based syntax to 'lavaan', as well as other
convenience functions such as naming paths and defining indirect
links automatically, in addition to convenience formatting optimized
for a publication and script sharing workflow.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between lavaanExtra versions 0.2.1 dated 2024-07-01 and 0.2.2 dated 2025-09-15
DESCRIPTION | 13 MD5 | 73 - NEWS.md | 280 +++---- R/cfa_fit_plot.R | 5 R/lavaan_cov.R | 11 R/lavaan_defined.R | 43 - R/lavaan_extract.R | 115 ++ R/lavaan_reg.R | 40 - R/nice_fit.R | 383 +++++---- R/nice_lavaanPlot.R | 11 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/example.Rmd | 1190 +++++++++++++++---------------- inst/doc/example.html | 9 man/cfa_fit_plot.Rd | 2 man/lavaan_cov.Rd | 2 man/lavaan_defined.Rd | 33 man/lavaan_extract.Rd | 33 man/lavaan_reg.Rd | 32 man/lavaan_var.Rd | 2 man/nice_fit.Rd | 2 man/nice_lavaanPlot.Rd | 2 man/nice_modindices.Rd | 2 man/nice_tidySEM.Rd | 2 man/write_lavaan.Rd | 2 tests/testthat/_snaps/lavaan_defined.md | 21 tests/testthat/_snaps/nice_modindices.md | 90 +- tests/testthat/_snaps/write_lavaan.md | 498 ++++++------ tests/testthat/test-cfa_fit_plot.R | 6 tests/testthat/test-lavaan_defined.R | 210 +++-- tests/testthat/test-lavaan_reg.R | 48 + tests/testthat/test-nice_fit.R | 253 ++++-- tests/testthat/test-nice_lavaanPlot.R | 1 tests/testthat/test-nice_modindices.R | 87 ++ tests/testthat/test-utils.R |only vignettes/example.Rmd | 1190 +++++++++++++++---------------- 38 files changed, 2580 insertions(+), 2135 deletions(-)
Title: Process Prediction
Description: Means to predict process flow, such as process outcome, next activity, next time, remaining time, and remaining trace. Off-the-shelf predictive models based on the concept of Transformers are provided, as well as multiple way to customize the models. This package is partly based on work described in Zaharah A. Bukhsh, Aaqib Saeed, & Remco M. Dijkman. (2021). "ProcessTransformer: Predictive Business Process Monitoring with Transformer Network" <doi:10.48550/arXiv.2104.00721>.
Author: Ivan Esin [aut],
Gert Janssenswillen [cre],
Hasselt University [cph]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between processpredictR versions 0.1.0 dated 2023-01-17 and 0.1.1 dated 2025-09-15
processpredictR-0.1.0/processpredictR/R/evaluate_s2s.R |only processpredictR-0.1.0/processpredictR/R/predict_s2s.R |only processpredictR-0.1.1/processpredictR/DESCRIPTION | 20 processpredictR-0.1.1/processpredictR/MD5 | 42 processpredictR-0.1.1/processpredictR/NAMESPACE | 6 processpredictR-0.1.1/processpredictR/R/compile.ppred_model.R | 6 processpredictR-0.1.1/processpredictR/R/create_model.R | 156 ++- processpredictR-0.1.1/processpredictR/R/create_vocabulary.R | 15 processpredictR-0.1.1/processpredictR/R/evaluate.ppred_model.R | 138 +- processpredictR-0.1.1/processpredictR/R/fit.ppred_model.R | 114 +- processpredictR-0.1.1/processpredictR/R/predict.ppred_model.R | 6 processpredictR-0.1.1/processpredictR/R/prepare_examples_df.R | 22 processpredictR-0.1.1/processpredictR/R/print.ppred_model.R | 4 processpredictR-0.1.1/processpredictR/R/processpredictR.R | 6 processpredictR-0.1.1/processpredictR/R/utils.R | 511 ---------- processpredictR-0.1.1/processpredictR/build/partial.rdb |only processpredictR-0.1.1/processpredictR/build/vignette.rds |binary processpredictR-0.1.1/processpredictR/inst/TransformerRemainingTrace.Rmd |only processpredictR-0.1.1/processpredictR/inst/doc/process-prediction-workflow.R | 168 +-- processpredictR-0.1.1/processpredictR/inst/doc/process-prediction-workflow.html | 257 ++--- processpredictR-0.1.1/processpredictR/man/create_model.Rd | 28 processpredictR-0.1.1/processpredictR/man/prepare_examples.Rd | 7 processpredictR-0.1.1/processpredictR/man/processpredictR.Rd | 4 processpredictR-0.1.1/processpredictR/man/reexports.Rd | 6 24 files changed, 527 insertions(+), 989 deletions(-)
More information about processpredictR at CRAN
Permanent link
Title: Markdown Parser and Renderer for R Graphics
Description: Provides the mean to parse and render markdown text with grid
along with facilities to define the styling of the text.
Author: Thomas Lin Pedersen [aut, cre] ,
Martin Mitas [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between marquee versions 1.2.0 dated 2025-09-05 and 1.2.1 dated 2025-09-15
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/grob.R | 17 +++++++++++------ R/guide_marquee.R | 13 ++++++++----- inst/doc/marquee.html | 2 +- man/figures/README-unnamed-chunk-2-1.png |binary src/marquee.cpp | 4 +++- 8 files changed, 40 insertions(+), 23 deletions(-)
Title: Query Data in 'Microsoft Fabric'
Description: Query data hosted in 'Microsoft Fabric'. Provides helpers to open 'DBI'
connections to 'SQL' endpoints of 'Lakehouse' and 'Data Warehouse' items; submit
'Data Analysis Expressions' ('DAX') queries to semantic model datasets in 'Microsoft
Fabric' and 'Power BI'; read 'Delta Lake' tables stored in 'OneLake'
('Azure Data Lake Storage Gen2'); and execute 'Spark' code via the 'Livy API'.
Author: Luka Koning [aut, cre, cph],
Kennispunt Twente [fnd]
Maintainer: Luka Koning <l.koning@kennispunttwente.nl>
Diff between fabricQueryR versions 0.1.1 dated 2025-09-08 and 0.2.0 dated 2025-09-15
DESCRIPTION | 17 - MD5 | 21 - NAMESPACE | 1 NEWS.md | 11 R/fabric_livy.R |only R/fabric_onelake_read_delta_table.R | 561 ++++++++++++++++----------------- R/fabric_pbi_dax_query.R | 610 ++++++++++++++++++------------------ R/fabric_sql_connect.R | 489 ++++++++++++++-------------- R/httr2_helpers.R |only R/inform.R |only README.md | 36 +- inst |only man/fabricQueryR-package.Rd | 2 man/fabric_livy_query.Rd |only 14 files changed, 885 insertions(+), 863 deletions(-)
Title: Hawkes and Log-Gaussian Cox Point Processes Using Template Model
Builder
Description: Fit Hawkes and log-Gaussian Cox process models with extensions. Introduced in Hawkes (1971) <doi:10.2307/2334319> a Hawkes process is a self-exciting temporal point process where the occurrence of an event immediately increases the chance of another. We extend this to consider self-inhibiting process and a non-homogeneous background rate. A log-Gaussian Cox process is a Poisson point process where the log-intensity is given by a Gaussian random field. We extend this to a joint likelihood formulation fitting a marked log-Gaussian Cox model. In addition, the package offers functionality to fit self-exciting spatiotemporal point processes. Models are fitted via maximum likelihood using 'TMB' (Template Model Builder). Where included 1) random fields are assumed to be Gaussian and are integrated over using the Laplace approximation and 2) a stochastic partial differential equation model, introduced by Lindgren, Rue, and Lindström. (2011) <doi:10.1111/j.1467-9868.2011.00777.x>, [...truncated...]
Author: Charlotte M. Jones-Todd [aut, cre, cph] ,
Alec van Helsdingen [aut] ,
Xiangjie Xue [ctb] ,
Joseph Reps [ctb] ,
Marsden Fund 3723517 [fnd],
Asian Office of Aerospace Research & Development FA2386-21-1-4028 [fnd]
Maintainer: Charlotte M. Jones-Todd <c.jonestodd@auckland.ac.nz>
This is a re-admission after prior archival of version 1.0.1 dated 2023-10-24
Diff between stelfi versions 1.0.1 dated 2023-10-24 and 1.0.2 dated 2025-09-15
stelfi-1.0.1/stelfi/man/stelfi.Rd |only stelfi-1.0.2/stelfi/DESCRIPTION | 30 +- stelfi-1.0.2/stelfi/MD5 | 56 ++-- stelfi-1.0.2/stelfi/NAMESPACE | 3 stelfi-1.0.2/stelfi/NEWS.md | 15 + stelfi-1.0.2/stelfi/R/compile.r | 1 stelfi-1.0.2/stelfi/R/data.r | 2 stelfi-1.0.2/stelfi/R/fit_hawkes.r | 6 stelfi-1.0.2/stelfi/R/fit_lgcp.r | 1 stelfi-1.0.2/stelfi/R/fit_stelfi.r | 40 ++- stelfi-1.0.2/stelfi/R/helpers.r | 61 ++++ stelfi-1.0.2/stelfi/R/plots.r | 95 ++++++- stelfi-1.0.2/stelfi/R/sim_hawkes.r | 4 stelfi-1.0.2/stelfi/R/stelfi.r | 5 stelfi-1.0.2/stelfi/build/vignette.rds |binary stelfi-1.0.2/stelfi/inst/CITATION |only stelfi-1.0.2/stelfi/inst/doc/stelfi.R | 8 stelfi-1.0.2/stelfi/inst/doc/stelfi.Rmd | 15 - stelfi-1.0.2/stelfi/inst/doc/stelfi.html | 248 ++++++++++++++++++-- stelfi-1.0.2/stelfi/man/compensator_differences.Rd |only stelfi-1.0.2/stelfi/man/iraq_terrorism.Rd | 2 stelfi-1.0.2/stelfi/man/show_hawkes.Rd | 18 - stelfi-1.0.2/stelfi/man/show_multivariate_hawkes.Rd |only stelfi-1.0.2/stelfi/man/sim_hawkes.Rd | 4 stelfi-1.0.2/stelfi/man/stelfi-package.Rd |only stelfi-1.0.2/stelfi/src/Makevars |only stelfi-1.0.2/stelfi/src/hawkes.h | 3 stelfi-1.0.2/stelfi/src/spatial_hawkes.h | 166 +++++++++---- stelfi-1.0.2/stelfi/src/spde_hawkes.h | 3 stelfi-1.0.2/stelfi/src/stelfi.cpp | 9 stelfi-1.0.2/stelfi/tests/testthat/test-fits.R | 13 - stelfi-1.0.2/stelfi/vignettes/stelfi.Rmd | 15 - 32 files changed, 635 insertions(+), 188 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.2-6 dated 2025-04-25 and 3.3-0 dated 2025-09-15
GGIR-3.2-6/GGIR/R/g.part5.classifyNaps.R |only GGIR-3.2-6/GGIR/man/g.part5.classifyNaps.Rd |only GGIR-3.2-6/GGIR/tests/testthat/test_part5_classifyNaps.R |only GGIR-3.3-0/GGIR/DESCRIPTION | 19 GGIR-3.3-0/GGIR/MD5 | 141 - GGIR-3.3-0/GGIR/NAMESPACE | 7 GGIR-3.3-0/GGIR/NEWS.md | 72 GGIR-3.3-0/GGIR/R/GGIR.R | 68 GGIR-3.3-0/GGIR/R/HASPT.R | 187 - GGIR-3.3-0/GGIR/R/check_params.R | 11 GGIR-3.3-0/GGIR/R/createConfigFile.R | 9 GGIR-3.3-0/GGIR/R/extractID.R | 2 GGIR-3.3-0/GGIR/R/g.analyse.perday.R | 27 GGIR-3.3-0/GGIR/R/g.analyse.perfile.R | 6 GGIR-3.3-0/GGIR/R/g.getmeta.R | 25 GGIR-3.3-0/GGIR/R/g.imputeTimegaps.R | 10 GGIR-3.3-0/GGIR/R/g.loadlog.R | 29 GGIR-3.3-0/GGIR/R/g.part1.R | 3 GGIR-3.3-0/GGIR/R/g.part2.R | 6 GGIR-3.3-0/GGIR/R/g.part3.R | 30 GGIR-3.3-0/GGIR/R/g.part3_alignIndexVectors.R |only GGIR-3.3-0/GGIR/R/g.part3_correct_guider.R |only GGIR-3.3-0/GGIR/R/g.part4.R | 61 GGIR-3.3-0/GGIR/R/g.part5.R | 71 GGIR-3.3-0/GGIR/R/g.part5.definedays.R | 13 GGIR-3.3-0/GGIR/R/g.part5.savetimeseries.R | 4 GGIR-3.3-0/GGIR/R/g.part6.R | 5 GGIR-3.3-0/GGIR/R/g.report.part4.R | 7 GGIR-3.3-0/GGIR/R/g.sib.det.R | 74 GGIR-3.3-0/GGIR/R/g.sib.sum.R | 6 GGIR-3.3-0/GGIR/R/g.sibreport.R | 9 GGIR-3.3-0/GGIR/R/load_params.R | 16 GGIR-3.3-0/GGIR/R/read.myacc.csv.R | 9 GGIR-3.3-0/GGIR/R/visualReport.R | 1245 +++++----- GGIR-3.3-0/GGIR/build/vignette.rds |binary GGIR-3.3-0/GGIR/inst/CITATION | 118 GGIR-3.3-0/GGIR/inst/doc/CutPoints.Rmd | 295 +- GGIR-3.3-0/GGIR/inst/doc/CutPoints.html | 966 ++++--- GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.R | 62 GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.Rmd | 62 GGIR-3.3-0/GGIR/inst/doc/ExternalFunction.html | 62 GGIR-3.3-0/GGIR/inst/doc/GGIR.Rmd | 57 GGIR-3.3-0/GGIR/inst/doc/GGIR.html | 55 GGIR-3.3-0/GGIR/inst/doc/GGIRParameters.Rmd | 20 GGIR-3.3-0/GGIR/inst/doc/GGIRParameters.html | 216 + GGIR-3.3-0/GGIR/inst/doc/GGIRoutput.Rmd | 35 GGIR-3.3-0/GGIR/inst/doc/GGIRoutput.html | 124 GGIR-3.3-0/GGIR/inst/doc/NapDetection.Rmd |only GGIR-3.3-0/GGIR/inst/doc/NapDetection.html |only GGIR-3.3-0/GGIR/inst/doc/readmyacccsv.Rmd | 2 GGIR-3.3-0/GGIR/inst/doc/readmyacccsv.html | 3 GGIR-3.3-0/GGIR/man/GGIR-package.Rd | 4 GGIR-3.3-0/GGIR/man/GGIR.Rd | 132 - GGIR-3.3-0/GGIR/man/HASPT.Rd | 26 GGIR-3.3-0/GGIR/man/g.loadlog.Rd | 7 GGIR-3.3-0/GGIR/man/g.part3_alignIndexVectors.Rd |only GGIR-3.3-0/GGIR/man/g.part3_correct_guider.Rd |only GGIR-3.3-0/GGIR/man/g.part5.definedays.Rd | 5 GGIR-3.3-0/GGIR/man/visualReport.Rd | 15 GGIR-3.3-0/GGIR/tests/testthat/test_HASPT.R | 157 - GGIR-3.3-0/GGIR/tests/testthat/test_chainof5parts.R | 28 GGIR-3.3-0/GGIR/tests/testthat/test_extractID.R | 4 GGIR-3.3-0/GGIR/tests/testthat/test_g.part3_alignIndexVectors.R |only GGIR-3.3-0/GGIR/tests/testthat/test_lightPart5.R | 5 GGIR-3.3-0/GGIR/tests/testthat/test_load_check_params.R | 2 GGIR-3.3-0/GGIR/tests/testthat/test_part1_with_allmetrics.R | 32 GGIR-3.3-0/GGIR/tests/testthat/test_part2_short_recordings.R |only GGIR-3.3-0/GGIR/tests/testthat/test_part3_correct_guider.R |only GGIR-3.3-0/GGIR/tests/testthat/test_part5_qwindow.R | 47 GGIR-3.3-0/GGIR/tests/testthat/test_recordingEndSleepHour.R | 2 GGIR-3.3-0/GGIR/tests/testthat/test_splitRecords.R | 4 GGIR-3.3-0/GGIR/vignettes/CutPoints.Rmd | 295 +- GGIR-3.3-0/GGIR/vignettes/ExternalFunction.Rmd | 62 GGIR-3.3-0/GGIR/vignettes/GGIR.Rmd | 57 GGIR-3.3-0/GGIR/vignettes/GGIRParameters.Rmd | 20 GGIR-3.3-0/GGIR/vignettes/GGIRoutput.Rmd | 35 GGIR-3.3-0/GGIR/vignettes/NapDetection.Rmd |only GGIR-3.3-0/GGIR/vignettes/readmyacccsv.Rmd | 2 78 files changed, 2893 insertions(+), 2297 deletions(-)
Title: Crew Launcher Plugins for Traditional High-Performance Computing
Clusters
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'crew.cluster' package extends the 'mirai'-powered
'crew' package with worker launcher plugins for traditional
high-performance computing systems.
Inspiration also comes from packages 'mirai' by Gao (2023)
<https://github.com/r-lib/mirai>,
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischl, and Surmann (2017).
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] ,
Michael Gilbert Levin [aut] ,
Brendan Furneaux [aut] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew.cluster versions 0.3.8 dated 2025-06-09 and 0.4.0 dated 2025-09-15
crew.cluster-0.3.8/crew.cluster/R/utils_names.R |only crew.cluster-0.3.8/crew.cluster/tests/testthat/test-utils_names.R |only crew.cluster-0.4.0/crew.cluster/DESCRIPTION | 12 - crew.cluster-0.4.0/crew.cluster/MD5 | 116 ++++------ crew.cluster-0.4.0/crew.cluster/NAMESPACE | 1 crew.cluster-0.4.0/crew.cluster/NEWS.md | 7 crew.cluster-0.4.0/crew.cluster/R/crew_controller_lsf.R | 4 crew.cluster-0.4.0/crew.cluster/R/crew_controller_pbs.R | 4 crew.cluster-0.4.0/crew.cluster/R/crew_controller_sge.R | 4 crew.cluster-0.4.0/crew.cluster/R/crew_controller_slurm.R | 10 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_cluster.R | 61 +---- crew.cluster-0.4.0/crew.cluster/R/crew_launcher_lsf.R | 10 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_pbs.R | 6 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_sge.R | 6 crew.cluster-0.4.0/crew.cluster/R/crew_launcher_slurm.R | 20 - crew.cluster-0.4.0/crew.cluster/R/crew_monitor_slurm.R | 15 + crew.cluster-0.4.0/crew.cluster/R/crew_options_cluster.R | 26 +- crew.cluster-0.4.0/crew.cluster/R/crew_options_lsf.R | 14 + crew.cluster-0.4.0/crew.cluster/R/crew_options_pbs.R | 14 + crew.cluster-0.4.0/crew.cluster/R/crew_options_sge.R | 14 + crew.cluster-0.4.0/crew.cluster/R/crew_options_slurm.R | 14 + crew.cluster-0.4.0/crew.cluster/R/crew_package.R | 1 crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_cluster.Rd | 53 ---- crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_lsf.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_pbs.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_sge.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_class_launcher_slurm.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_controller_lsf.Rd | 14 - crew.cluster-0.4.0/crew.cluster/man/crew_controller_pbs.Rd | 14 - crew.cluster-0.4.0/crew.cluster/man/crew_controller_sge.Rd | 14 - crew.cluster-0.4.0/crew.cluster/man/crew_controller_slurm.Rd | 22 - crew.cluster-0.4.0/crew.cluster/man/crew_launcher_cluster.Rd | 9 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_lsf.Rd | 9 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_pbs.Rd | 9 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_sge.Rd | 9 crew.cluster-0.4.0/crew.cluster/man/crew_launcher_slurm.Rd | 16 - crew.cluster-0.4.0/crew.cluster/man/crew_options_cluster.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_options_lsf.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_options_pbs.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_options_sge.Rd | 12 - crew.cluster-0.4.0/crew.cluster/man/crew_options_slurm.Rd | 12 - crew.cluster-0.4.0/crew.cluster/tests/pbs/minimal.R | 5 crew.cluster-0.4.0/crew.cluster/tests/sge/minimal.R | 5 crew.cluster-0.4.0/crew.cluster/tests/sge/monitor.R | 6 crew.cluster-0.4.0/crew.cluster/tests/slurm/minimal.R | 5 crew.cluster-0.4.0/crew.cluster/tests/slurm/monitor.R | 6 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_lsf.R | 8 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_pbs.R | 3 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_sge.R | 3 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_controller_slurm.R | 9 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_cluster.R | 62 +---- crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_lsf.R | 19 - crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_pbs.R | 9 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_sge.R | 9 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_launcher_slurm.R | 17 - crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_cluster.R | 1 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_lsf.R | 2 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_pbs.R | 2 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_sge.R | 2 crew.cluster-0.4.0/crew.cluster/tests/testthat/test-crew_options_slurm.R | 2 60 files changed, 362 insertions(+), 449 deletions(-)
Title: A Crew Launcher Plugin for AWS Batch
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'crew.aws.batch' package extends the 'mirai'-powered
'crew' package with a worker launcher plugin for AWS Batch.
Inspiration also comes from packages 'mirai' by Gao (2023)
<https://github.com/r-lib/mirai>,
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischl, and Surmann (2017).
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew.aws.batch versions 0.0.11 dated 2025-06-09 and 0.1.0 dated 2025-09-15
crew.aws.batch-0.0.11/crew.aws.batch/man/crew_launcher_aws_batch_terminate.Rd |only crew.aws.batch-0.1.0/crew.aws.batch/DESCRIPTION | 10 - crew.aws.batch-0.1.0/crew.aws.batch/MD5 | 29 +-- crew.aws.batch-0.1.0/crew.aws.batch/NAMESPACE | 1 crew.aws.batch-0.1.0/crew.aws.batch/NEWS.md | 10 + crew.aws.batch-0.1.0/crew.aws.batch/R/crew_controller_aws_batch.R | 5 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_definition_aws_batch.R | 8 crew.aws.batch-0.1.0/crew.aws.batch/R/crew_launcher_aws_batch.R | 90 +++------- crew.aws.batch-0.1.0/crew.aws.batch/R/crew_monitor_aws_batch.R | 25 +- crew.aws.batch-0.1.0/crew.aws.batch/R/crew_options_aws_batch.R | 15 - crew.aws.batch-0.1.0/crew.aws.batch/man/crew_class_launcher_aws_batch.Rd | 42 ---- crew.aws.batch-0.1.0/crew.aws.batch/man/crew_controller_aws_batch.Rd | 21 -- crew.aws.batch-0.1.0/crew.aws.batch/man/crew_launcher_aws_batch.Rd | 18 -- crew.aws.batch-0.1.0/crew.aws.batch/tests/controller/minimal.R | 4 crew.aws.batch-0.1.0/crew.aws.batch/tests/testthat/test-crew_controller_aws_batch.R | 7 crew.aws.batch-0.1.0/crew.aws.batch/tests/testthat/test-crew_launcher_aws_batch.R | 5 16 files changed, 116 insertions(+), 174 deletions(-)
More information about crew.aws.batch at CRAN
Permanent link
Title: 'R' Bindings for the 'Boost' Math Functions
Description: 'R' bindings for the various functions and statistical distributions
provided by the 'Boost' Math library <https://www.boost.org/doc/libs/latest/libs/math/doc/html/index.html>.
Author: Andrew R. Johnson [aut, cre]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between boostmath versions 1.1.0 dated 2025-09-04 and 1.2.0 dated 2025-09-15
boostmath-1.1.0/boostmath/src/interpolators |only boostmath-1.1.0/boostmath/src/rootfinding_and_minimisation/cubic_roots.cpp |only boostmath-1.1.0/boostmath/src/rootfinding_and_minimisation/quartic_roots.cpp |only boostmath-1.1.0/boostmath/src/statistics |only boostmath-1.2.0/boostmath/DESCRIPTION | 8 boostmath-1.2.0/boostmath/MD5 | 121 +--- boostmath-1.2.0/boostmath/NAMESPACE | 7 boostmath-1.2.0/boostmath/NEWS.md | 4 boostmath-1.2.0/boostmath/R/filters.R |only boostmath-1.2.0/boostmath/R/holtsmark_distribution.R | 13 boostmath-1.2.0/boostmath/R/interpolators.R | 80 +- boostmath-1.2.0/boostmath/R/landau_distribution.R | 13 boostmath-1.2.0/boostmath/R/mapairy_distribution.R | 13 boostmath-1.2.0/boostmath/R/non_central_f_distribution.R |only boostmath-1.2.0/boostmath/R/saspoint5_distribution.R | 13 boostmath-1.2.0/boostmath/build/vignette.rds |binary boostmath-1.2.0/boostmath/inst/doc/filters.R |only boostmath-1.2.0/boostmath/inst/doc/filters.Rmd |only boostmath-1.2.0/boostmath/inst/doc/filters.html |only boostmath-1.2.0/boostmath/inst/doc/interpolation.R | 26 boostmath-1.2.0/boostmath/inst/doc/interpolation.Rmd | 28 boostmath-1.2.0/boostmath/inst/doc/interpolation.html | 32 - boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.R |only boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.Rmd |only boostmath-1.2.0/boostmath/inst/doc/statistical-distributions.html |only boostmath-1.2.0/boostmath/man/barycentric_rational.Rd | 4 boostmath-1.2.0/boostmath/man/bezier_polynomial.Rd | 4 boostmath-1.2.0/boostmath/man/bilinear_uniform.Rd | 4 boostmath-1.2.0/boostmath/man/cardinal_cubic_b_spline.Rd | 4 boostmath-1.2.0/boostmath/man/cardinal_cubic_hermite.Rd | 4 boostmath-1.2.0/boostmath/man/cardinal_quadratic_b_spline.Rd | 4 boostmath-1.2.0/boostmath/man/cardinal_quintic_b_spline.Rd | 4 boostmath-1.2.0/boostmath/man/cardinal_quintic_hermite.Rd | 4 boostmath-1.2.0/boostmath/man/catmull_rom.Rd | 4 boostmath-1.2.0/boostmath/man/cubic_hermite.Rd | 4 boostmath-1.2.0/boostmath/man/filters.Rd |only boostmath-1.2.0/boostmath/man/holtsmark_distribution.Rd | 13 boostmath-1.2.0/boostmath/man/landau_distribution.Rd | 13 boostmath-1.2.0/boostmath/man/makima.Rd | 4 boostmath-1.2.0/boostmath/man/mapairy_distribution.Rd | 13 boostmath-1.2.0/boostmath/man/non_central_f_distribution.Rd |only boostmath-1.2.0/boostmath/man/pchip.Rd | 4 boostmath-1.2.0/boostmath/man/quintic_hermite.Rd | 4 boostmath-1.2.0/boostmath/man/saspoint5_distribution.Rd | 13 boostmath-1.2.0/boostmath/src/Makevars | 1 boostmath-1.2.0/boostmath/src/boostmath/macros.hpp | 282 ++++++++-- boostmath-1.2.0/boostmath/src/boostmath/sexp.hpp | 130 ---- boostmath-1.2.0/boostmath/src/boostmath/type_traits.hpp |only boostmath-1.2.0/boostmath/src/filters.cpp |only boostmath-1.2.0/boostmath/src/init.cpp | 8 boostmath-1.2.0/boostmath/src/interpolators.cpp | 98 +++ boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation.cpp | 3 boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation/polynomial_roots.cpp |only boostmath-1.2.0/boostmath/src/rootfinding_and_minimisation/with_derivatives.cpp | 12 boostmath-1.2.0/boostmath/src/special_functions/factorials_and_binomial_coefficients.cpp | 20 boostmath-1.2.0/boostmath/src/special_functions/number_series.cpp | 27 boostmath-1.2.0/boostmath/src/statistics.cpp | 72 ++ boostmath-1.2.0/boostmath/src/vector_functionals.cpp | 108 --- boostmath-1.2.0/boostmath/vignettes/filters.Rmd |only boostmath-1.2.0/boostmath/vignettes/interpolation.Rmd | 28 boostmath-1.2.0/boostmath/vignettes/statistical-distributions.Rmd |only 61 files changed, 683 insertions(+), 568 deletions(-)
Title: Initiation à La Statistique Avec R
Description: Datasets and functions for the book "Initiation à la Statistique avec R", F. Bertrand and M. Maumy-Bertrand (2022, ISBN:978-2100782826 Dunod, fourth edition).
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between BioStatR versions 4.1.0 dated 2025-09-13 and 4.1.1 dated 2025-09-15
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/Rplots.pdf |binary tests/testthat/test_binom_ci_values.R | 18 +++++++++++++++++- 5 files changed, 30 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-20 0.2.1
Title: Visualising Multiple Pairwise Variable Correlations and Other
Scores
Description: We provide a tidy data structure and visualisations for multiple or grouped variable correlations,
general association measures scagnostics and other pairwise scores suitable for numerical, ordinal and nominal variables.
Supported measures include distance correlation, maximal information, ace correlation, Kendall's tau, and polychoric correlation.
Author: Amit Chinwan [aut],
Catherine Hurley [aut, cre]
Maintainer: Catherine Hurley <catherine.hurley@mu.ie>
Diff between bullseye versions 1.0.0 dated 2025-05-09 and 1.0.1 dated 2025-09-15
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/bullseye-package.R | 2 ++ R/plot_pairwise.R | 43 ++++++++++++++++++++++++++++--------------- README.md | 1 + inst/doc/integrating.html | 8 ++++---- inst/doc/vis_pairwise.html | 30 +++++++++++++++--------------- man/figures |only man/plot_pairwise.Rd | 3 +++ man/plot_pairwise_linear.Rd | 2 +- 12 files changed, 77 insertions(+), 49 deletions(-)
More information about twomodeclusteringGA at CRAN
Permanent link
Title: Superpixel Image Segmentation
Description: Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.
Author: Lampros Mouselimis [aut, cre]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between SuperpixelImageSegmentation versions 1.0.5 dated 2022-02-06 and 1.0.6 dated 2025-09-15
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ README.md | 4 ++-- man/Image_Segmentation.Rd | 30 +++++++++++++++--------------- src/Makevars | 4 +--- src/Makevars.win | 6 ++---- src/superPx_AP_Kmeans_Segment.cpp | 1 - 8 files changed, 42 insertions(+), 39 deletions(-)
More information about SuperpixelImageSegmentation at CRAN
Permanent link
Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre],
Piotr Szul [aut],
John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>
Diff between pathling versions 7.0.0 dated 2024-05-21 and 8.0.2 dated 2025-09-15
pathling-7.0.0/pathling/R/query.R |only pathling-7.0.0/pathling/man/ImportMode.Rd |only pathling-7.0.0/pathling/man/ds_aggregate.Rd |only pathling-7.0.0/pathling/man/ds_extract.Rd |only pathling-8.0.2/pathling/DESCRIPTION | 20 pathling-8.0.2/pathling/MD5 | 87 +-- pathling-8.0.2/pathling/NAMESPACE | 11 pathling-8.0.2/pathling/R/context.R | 9 pathling-8.0.2/pathling/R/data.R | 2 pathling-8.0.2/pathling/R/datasource.R | 336 +++++++++++---- pathling-8.0.2/pathling/R/dependencies.R | 2 pathling-8.0.2/pathling/R/encoding.R | 8 pathling-8.0.2/pathling/R/etc.R | 12 pathling-8.0.2/pathling/R/fhir.R | 9 pathling-8.0.2/pathling/R/functions.R | 23 - pathling-8.0.2/pathling/R/rexport-sparklyr.R | 2 pathling-8.0.2/pathling/R/udfs.R | 45 -- pathling-8.0.2/pathling/R/utils.R | 2 pathling-8.0.2/pathling/R/view.R |only pathling-8.0.2/pathling/README.md | 8 pathling-8.0.2/pathling/man/SaveMode.Rd | 3 pathling-8.0.2/pathling/man/ds_read.Rd | 6 pathling-8.0.2/pathling/man/ds_view.Rd |only pathling-8.0.2/pathling/man/ds_write_delta.Rd | 12 pathling-8.0.2/pathling/man/ds_write_ndjson.Rd | 8 pathling-8.0.2/pathling/man/ds_write_parquet.Rd | 4 pathling-8.0.2/pathling/man/ds_write_tables.Rd | 12 pathling-8.0.2/pathling/man/pathling_connect.Rd | 7 pathling-8.0.2/pathling/man/pathling_encode.Rd | 2 pathling-8.0.2/pathling/man/pathling_encode_bundle.Rd | 2 pathling-8.0.2/pathling/man/pathling_example_resource.Rd | 6 pathling-8.0.2/pathling/man/pathling_read_bulk.Rd |only pathling-8.0.2/pathling/man/pathling_read_bundles.Rd | 9 pathling-8.0.2/pathling/man/pathling_read_datasets.Rd | 9 pathling-8.0.2/pathling/man/pathling_read_delta.Rd | 9 pathling-8.0.2/pathling/man/pathling_read_ndjson.Rd | 9 pathling-8.0.2/pathling/man/pathling_read_parquet.Rd | 9 pathling-8.0.2/pathling/man/pathling_read_tables.Rd | 10 pathling-8.0.2/pathling/man/tx_designation.Rd | 9 pathling-8.0.2/pathling/man/tx_display.Rd | 8 pathling-8.0.2/pathling/man/tx_property_of.Rd | 8 pathling-8.0.2/pathling/man/tx_subsumed_by.Rd | 2 pathling-8.0.2/pathling/man/tx_subsumes.Rd | 8 pathling-8.0.2/pathling/man/tx_to_coding.Rd | 7 pathling-8.0.2/pathling/man/tx_to_ecl_value_set.Rd | 4 pathling-8.0.2/pathling/man/tx_to_loinc_coding.Rd | 7 pathling-8.0.2/pathling/man/tx_to_snomed_coding.Rd | 7 pathling-8.0.2/pathling/man/tx_translate.Rd | 8 48 files changed, 449 insertions(+), 312 deletions(-)
Title: Numerical Association Rule Mining using Population-Based
Nature-Inspired Algorithms
Description: Framework is devoted to mining numerical association rules through the
utilization of nature-inspired algorithms for optimization. Drawing inspiration
from the 'NiaARM' 'Python' and the 'NiaARM' 'Julia' packages, this repository
introduces the capability to perform numerical association rule mining in
the R programming language.
Fister Jr., Iglesias, Galvez, Del Ser, Osaba and Fister (2018) <doi:10.1007/978-3-030-03493-1_9>.
Author: Iztok Jr. Fister [aut, cre, cph] ,
Gerlinde Emsenhuber [aut] ,
Jan Hendrik Pluemer [aut]
Maintainer: Iztok Jr. Fister <iztok@iztok.space>
Diff between niarules versions 0.3.0 dated 2025-09-08 and 0.3.1 dated 2025-09-15
DESCRIPTION | 6 MD5 | 33 NAMESPACE | 7 NEWS.md |only R/build_coral_plots.R | 119 ++ R/coral_plot_visualization.R | 959 +++++++++++++++++ R/coral_theme.R |only R/metric_domains.R |only R/parse_rules.R | 67 + README.md | 2 man/build_coral_plots.Rd | 20 man/coral_get_theme.Rd |only man/coral_list_themes.Rd |only man/figures/coral-plot-example.png |binary man/metric_domains.Rd |only man/render_coral_rgl_experimental.Rd |only src/interval_parser.h | 16 src/parse_rules.cpp | 2 tests/testthat/test-build-coral-layout.R | 33 tests/testthat/test-metric-domains.R |only tests/testthat/test-parse-rules.R | 36 tests/testthat/test-render-coral-layout-experimental.R |only 22 files changed, 1268 insertions(+), 32 deletions(-)
More information about ISPYARDSWinProbabilityGSDesign at CRAN
Permanent link
Title: Generate Optimal Designs of Accelerated Life Test using
PSO-Based Algorithm
Description: A computationally efficient solution for generating optimal experimental designs in Accelerated Life Testing (ALT). Leveraging a Particle Swarm Optimization (PSO)-based hybrid algorithm, the package identifies optimal test plans that minimize estimation variance under specified failure models and stress profiles. For more detailed, see Lee et al. (2025), Optimal Robust Strategies for Accelerated Life Tests and Fatigue Testing of Polymer Composite Materials, submitted to Annals of Applied Statistics, <https://imstat.org/journals-and-publications/annals-of-applied-statistics/annals-of-applied-statistics-next-issues/>, and Hoang (2025), Model-Robust Minimax Design of Accelerated Life Tests via PSO-based Hybrid Algorithm, Master' Thesis, Unpublished.
Author: Hoai-Linh Hoang [aut, cre],
I-Chen Lee [aut],
Ping-Yang Chen [aut],
Ray-Bing Chen [aut],
Weng Kee Wong [aut]
Maintainer: Hoai-Linh Hoang <hoailinh.hoang17@gmail.com>
Diff between minimaxALT versions 1.0.0 dated 2025-09-01 and 1.0.1 dated 2025-09-15
DESCRIPTION | 6 +++--- MD5 | 22 ++++++++++++---------- R/equivalence_theorem.R | 8 ++++---- R/minimaxALT.R | 11 ++++++----- R/setup.R | 4 +--- man/check_equivalence_theorem.Rd | 5 ++--- man/find_optimal_alt.Rd | 7 ++++--- man/set_design_info.Rd | 3 --- src/Makevars | 3 +-- src/Makevars.win | 3 +-- src/common.h | 2 -- tests |only 12 files changed, 34 insertions(+), 40 deletions(-)
Title: Sequential Probability Ratio Test (SPRT) Method
Description: Provides functions to perform the Sequential Probability Ratio Test (SPRT)
for hypothesis testing in Binomial, Poisson and Normal distributions.
The package allows users to specify Type I and Type II error probabilities,
decision thresholds, and compare null and alternative hypotheses sequentially
as data accumulate. It includes visualization tools for plotting the likelihood
ratio path and decision boundaries, making it easier to interpret results.
The methods are based on Wald (1945) <doi:10.1214/aoms/1177731118>,
who introduced the SPRT as one of the earliest and most powerful sequential
analysis techniques. This package is useful in quality control, clinical trials,
and other applications requiring early decision-making.The term 'SPRT' is an abbreviation and used intentionally.
Author: Huchesh Budihal [aut, cre]
Maintainer: Huchesh Budihal <hhbudihal17@gmail.com>
This is a re-admission after prior archival of version 1.0 dated 2015-04-14
Diff between SPRT versions 1.0 dated 2015-04-14 and 1.1.0 dated 2025-09-15
SPRT-1.0/SPRT/R/C.fn.R |only SPRT-1.0/SPRT/R/D.fn.R |only SPRT-1.0/SPRT/R/SPRT-internal.R |only SPRT-1.0/SPRT/R/SPRT.default.R |only SPRT-1.0/SPRT/R/boundary.fn.R |only SPRT-1.0/SPRT/R/llr.fn.R |only SPRT-1.0/SPRT/R/plot.SPRT.R |only SPRT-1.0/SPRT/R/print.SPRT.R |only SPRT-1.0/SPRT/R/waldBoundary.R |only SPRT-1.0/SPRT/man/C.fn.Rd |only SPRT-1.0/SPRT/man/D.fn.Rd |only SPRT-1.0/SPRT/man/SPRT-package.Rd |only SPRT-1.0/SPRT/man/SPRT.default.Rd |only SPRT-1.0/SPRT/man/boundary.fn.Rd |only SPRT-1.0/SPRT/man/llr.fn.Rd |only SPRT-1.0/SPRT/man/plot.SPRT.Rd |only SPRT-1.0/SPRT/man/print.SPRT.Rd |only SPRT-1.0/SPRT/man/waldBoundary.Rd |only SPRT-1.1.0/SPRT/DESCRIPTION | 33 +++++++++++----- SPRT-1.1.0/SPRT/LICENSE | 4 +- SPRT-1.1.0/SPRT/MD5 | 35 ++++++----------- SPRT-1.1.0/SPRT/NAMESPACE | 16 ++++++-- SPRT-1.1.0/SPRT/R/SPRT.R | 76 ++++++++++++++++++++++++++++++++++++-- SPRT-1.1.0/SPRT/R/sprt_plot.R |only SPRT-1.1.0/SPRT/build |only SPRT-1.1.0/SPRT/inst |only SPRT-1.1.0/SPRT/man/sprt.Rd |only SPRT-1.1.0/SPRT/man/sprt_plot.Rd |only SPRT-1.1.0/SPRT/tests |only SPRT-1.1.0/SPRT/vignettes |only 30 files changed, 123 insertions(+), 41 deletions(-)
Title: Feature Selection SVM using Penalty Functions
Description: Support Vector Machine (SVM) classification with simultaneous feature selection using penalty
functions is implemented. The smoothly clipped absolute deviation (SCAD),
'L1-norm', 'Elastic Net' ('L1-norm' and 'L2-norm') and 'Elastic
SCAD' (SCAD and 'L2-norm') penalties are available. The tuning
parameters can be found using either a fixed grid or a interval
search.
Author: Natalia Becker [aut],
Wiebke Werft [aut],
Axel Benner [aut],
Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between penalizedSVM versions 1.1.4 dated 2023-03-23 and 1.2.0 dated 2025-09-15
DESCRIPTION | 33 ++- MD5 | 18 + NEWS.md | 7 R/svm.fs.R | 451 ++++++++++++++++++++++---------------------- README.md |only inst |only man/penalizedSVM-package.Rd | 2 tests |only 8 files changed, 280 insertions(+), 231 deletions(-)
Title: Functions to Assist Design and Analysis of Agronomic Experiments
Description: Provides functions to aid in the design and analysis of
agronomic and agricultural experiments through easy access to
documentation and helper functions, especially for users who are
learning these concepts. While not required for most functionality,
this package enhances the `asreml` package which provides a
computationally efficient algorithm for fitting mixed models
using Residual Maximum Likelihood. It is a commercial package
that can be purchased as 'asreml-R' from 'VSNi'
<https://vsni.co.uk/>, who will supply a zip file for local
installation/updating (see <https://asreml.kb.vsni.co.uk/>).
Author: Sharon Nielsen [aut],
Sam Rogers [aut, cre],
Annie Conway [aut],
University of Adelaide [cph, fnd] ,
Grains Research and Development Corporation [cph, fnd]
Maintainer: Sam Rogers <biometrytraining@adelaide.edu.au>
Diff between biometryassist versions 1.3.2 dated 2025-09-11 and 1.3.3 dated 2025-09-15
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- NEWS.md | 6 +++++ tests/testthat/_snaps/utility_functions.md | 34 ++++++++++++++--------------- tests/testthat/test-mct.R | 9 ++++--- tests/testthat/test-zzz_install_asreml.R | 3 -- 6 files changed, 38 insertions(+), 32 deletions(-)
More information about biometryassist at CRAN
Permanent link
Title: Estimation of Transition Probabilities in Multistate Models
Description: Estimation of transition probabilities for the
illness-death model and or the three-state progressive model.
Author: Artur Araujo [aut, cre] ,
Luis Meira-Machado [aut] ,
Javier Roca-Pardinas [aut]
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between TPmsm versions 1.2.12 dated 2023-12-07 and 1.2.14 dated 2025-09-15
DESCRIPTION | 31 MD5 | 158 +- R/BtoTPCmsm.R | 6 R/BtoTPmsm.R | 22 R/Clean.R | 6 R/OutTPmsm.R | 6 R/Outetm.R | 46 R/Outp3state.R | 6 R/TPmsmOut.R | 38 R/Trans.R | 86 - R/TransBoot.R | 124 +- R/TransCheck.R | 258 ++-- R/TransMatrix.R | 82 - R/TransMethod.R | 40 R/TransPROB.R | 90 - R/TransWidth.R | 30 R/addlegend.R | 30 R/as.data.frame.survTP.R | 14 R/contour.TPCmsm.R | 122 +- R/corrTP.R | 58 - R/csample.int.R | 8 R/dgpTP.R | 20 R/image.TPCmsm.R | 190 +-- R/lines.TPCmsm.R | 150 +- R/lines.TPmsm.R | 62 - R/methods.R | 62 - R/object.R | 14 R/plot.TPCmsm.R | 170 +-- R/plot.TPmsm.R | 68 - R/print.TPCmsm.R | 46 R/print.TPmsm.R | 52 R/setPackageSeedTP.R | 26 R/setSeedTP.R | 50 R/setThreadsTP.R | 16 R/survTP.R | 88 - R/toTPCmsm.R | 6 R/toTPmsm.R | 22 R/transAJ.R | 18 R/transIPCW.R | 30 R/transKMPW.R | 24 R/transKMW.R | 24 R/transLIN.R | 32 R/transLS.R | 28 R/transPAJ.R | 18 R/uniqueTP.R | 14 R/zzz.R | 6 README.md | 172 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 122 +- inst/NEWS.Rd | 12 inst/doc/TPmsm.R | 24 inst/doc/TPmsm.Rnw | 2324 ++++++++++++++++++++++---------------------- inst/doc/TPmsm.pdf |binary man/TPmsm-package.Rd | 8 man/TPmsmOut.Rd | 2 man/as.data.frame.survTP.Rd | 2 man/bladderTP.Rd | 86 - man/colonTP.Rd | 110 +- man/contour.TPCmsm.Rd | 2 man/corrTP.Rd | 2 man/dgpTP.Rd | 2 man/heartTP.Rd | 73 - man/image.TPCmsm.Rd | 2 man/lines.TPCmsm.Rd | 2 man/lines.TPmsm.Rd | 2 man/plot.TPCmsm.Rd | 2 man/plot.TPmsm.Rd | 2 man/setPackageSeedTP.Rd | 2 man/setSeedTP.Rd | 2 man/setThreadsTP.Rd | 2 man/survTP.Rd | 2 man/transAJ.Rd | 2 man/transIPCW.Rd | 2 man/transKMPW.Rd | 2 man/transKMW.Rd | 2 man/transLIN.Rd | 2 man/transLS.Rd | 2 man/transPAJ.Rd | 2 vignettes/TPmsm.Rnw | 2324 ++++++++++++++++++++++---------------------- 80 files changed, 3904 insertions(+), 3890 deletions(-)
Title: Rendering Risk Literacy more Transparent
Description: Risk-related information (like the prevalence of conditions, the sensitivity and specificity of diagnostic tests, or the effectiveness of interventions or treatments) can be expressed in terms of frequencies or probabilities. By providing a toolbox of corresponding metrics and representations, 'riskyr' computes, translates, and visualizes risk-related information in a variety of ways. Adopting multiple complementary perspectives provides insights into the interplay between key parameters and renders teaching and training programs on risk literacy more transparent (see <doi:10.3389/fpsyg.2020.567817>, for details).
Author: Hansjoerg Neth [aut, cre] ,
Felix Gaisbauer [aut] ,
Nico Gradwohl [aut] ,
Wolfgang Gaissmaier [aut]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between riskyr versions 0.4.0 dated 2022-08-15 and 0.5.0 dated 2025-09-15
DESCRIPTION | 25 MD5 | 192 ++-- NEWS.md | 216 +++-- R/comp_util.R | 637 ++++++++++++++- R/init_prob.R | 26 R/init_txt.R | 15 R/plot_crisk.R | 3 R/plot_prism.R | 2 R/plot_util.R | 119 +- R/riskyr_class.R | 14 R/riskyr_sims.R | 4 README.md | 522 +++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 27 inst/WORDLIST | 10 inst/doc/A_user_guide.R | 140 +-- inst/doc/A_user_guide.Rmd | 30 inst/doc/A_user_guide.html | 1300 ++++++++++++++++++++++---------- inst/doc/B_data_formats.Rmd | 2 inst/doc/B_data_formats.html | 704 +++++++++++------ inst/doc/C_confusion_matrix.R | 14 inst/doc/C_confusion_matrix.Rmd | 2 inst/doc/C_confusion_matrix.html | 580 ++++++++++---- inst/doc/D_functional_perspectives.R | 32 inst/doc/D_functional_perspectives.Rmd | 12 inst/doc/D_functional_perspectives.html | 326 +++++--- inst/doc/E_riskyr_primer.R | 46 - inst/doc/E_riskyr_primer.Rmd | 25 inst/doc/E_riskyr_primer.html | 960 +++++++++++++++-------- inst/pix/logo.png |binary inst/pix/riskyr_hex_petgrey.png |only man/BRCA1.Rd | 2 man/BRCA1_mam.Rd | 4 man/BRCA1_ova.Rd | 4 man/BRCA2.Rd | 2 man/BRCA2_mam.Rd | 4 man/BRCA2_ova.Rd | 4 man/acc.Rd | 2 man/accu.Rd | 10 man/as_pb.Rd | 3 man/as_pc.Rd | 3 man/comp_FDR.Rd | 4 man/comp_FOR.Rd | 4 man/comp_NPV.Rd | 4 man/comp_PPV.Rd | 4 man/comp_acc.Rd | 4 man/comp_accu_freq.Rd | 8 man/comp_accu_prob.Rd | 8 man/comp_comp_pair.Rd | 4 man/comp_complement.Rd | 4 man/comp_complete_prob_set.Rd | 4 man/comp_err.Rd | 8 man/comp_fart.Rd | 4 man/comp_freq_freq.Rd | 2 man/comp_freq_prob.Rd | 2 man/comp_min_N.Rd | 2 man/comp_mirt.Rd | 4 man/comp_ppod.Rd | 4 man/comp_prob.Rd | 2 man/comp_prob_freq.Rd | 2 man/comp_prob_prob.Rd | 2 man/comp_sens.Rd | 4 man/comp_spec.Rd | 4 man/df_scenarios.Rd | 4 man/err.Rd | 4 man/freq.Rd | 8 man/init_txt.Rd | 2 man/num.Rd | 8 man/pal.Rd | 6 man/pal_bw.Rd | 6 man/pal_bwp.Rd | 6 man/pal_crisk.Rd | 2 man/pal_kn.Rd | 10 man/pal_mbw.Rd | 10 man/pal_mod.Rd | 10 man/pal_org.Rd | 10 man/pal_rgb.Rd | 10 man/pal_unikn.Rd | 10 man/pal_vir.Rd | 10 man/plot.box.Rd | 5 man/plot.riskyr.Rd | 4 man/print.box.Rd |only man/prob.Rd | 8 man/read_popu.Rd | 4 man/riskyr.Rd | 6 man/summary.riskyr.Rd | 4 man/t_A.Rd | 4 man/t_B.Rd | 4 man/t_I.Rd | 4 man/txt.Rd | 4 man/txt_TF.Rd | 8 man/txt_org.Rd | 8 vignettes/A_user_guide.Rmd | 30 vignettes/B_data_formats.Rmd | 2 vignettes/C_confusion_matrix.Rmd | 2 vignettes/D_functional_perspectives.Rmd | 12 vignettes/E_riskyr_primer.Rmd | 25 98 files changed, 4245 insertions(+), 2116 deletions(-)
Title: Parallelised Estimation of Prediction Error
Description: Designed for prediction error estimation
through resampling techniques, possibly accelerated by parallel
execution on a compute cluster. Newly developed model fitting
routines can be easily incorporated. Methods used in the package are detailed in
Porzelius Ch., Binder H. and Schumacher M. (2009) <doi:10.1093/bioinformatics/btp062>
and were used, for instance, in
Porzelius Ch., Schumacher M. and Binder H. (2011) <doi:10.1007/s00180-011-0236-6>.
Author: Christine Porzelius [aut],
Harald Binder [aut],
Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between peperr versions 1.5 dated 2023-03-22 and 1.6 dated 2025-09-15
DESCRIPTION | 29 +++++++++++++++++++++-------- MD5 | 34 +++++++++++++++++++++++++--------- NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/aggregation.brier.R | 4 ++-- R/aggregation.misclass.R | 4 ++-- README.md | 7 ++++--- inst |only man/peperr.Rd | 6 +++--- src/R_init_peperr.c | 2 +- src/noinf_R.h | 2 +- tests |only 12 files changed, 66 insertions(+), 30 deletions(-)
Title: Access Brazilian Data via APIs and Curated Datasets
Description: Provides functions to access data from the 'BrasilAPI', 'REST Countries API',
'Nager.Date API', and 'World Bank API', related to Brazil's postal codes, banks, holidays,
company registrations, international country indicators, public holidays information, and
economic development data. Additionally, the package includes curated datasets related to
Brazil, covering topics such as demographic data (males and females by state and year),
river levels, environmental emission factors, film festivals, and yellow fever outbreak
records. The package supports research and analysis focused on Brazil by integrating open
APIs with high-quality datasets from multiple domains. For more information on the APIs, see:
'BrasilAPI' <https://brasilapi.com.br/>,
'Nager.Date' <https://date.nager.at/Api>,
'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>,
and 'REST Countries API' <https://restcountries.com/>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between BrazilDataAPI versions 0.1.0 dated 2025-07-09 and 0.2.0 dated 2025-09-15
BrazilDataAPI-0.1.0/BrazilDataAPI/R/get_country_info.R |only BrazilDataAPI-0.1.0/BrazilDataAPI/man/get_country_info.Rd |only BrazilDataAPI-0.1.0/BrazilDataAPI/tests/testthat/test-get_country_info.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/DESCRIPTION | 32 +- BrazilDataAPI-0.2.0/BrazilDataAPI/MD5 | 109 ++++--- BrazilDataAPI-0.2.0/BrazilDataAPI/NAMESPACE | 18 + BrazilDataAPI-0.2.0/BrazilDataAPI/NEWS.md |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/brazildataapi-package.R | 12 BrazilDataAPI-0.2.0/BrazilDataAPI/R/data-documentation.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_banks.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cep.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_child_mortality.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cnpj.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_cpi.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_energy_use.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_gdp.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_holidays.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_hospital_beds.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_life_expectancy.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_literacy_rate.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_municipalities.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_population.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_rate_name.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_rates.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_unemployment.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_brazil_vehicle_brands.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/R/get_country_info_br.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/R/utils.R | 39 ++ BrazilDataAPI-0.2.0/BrazilDataAPI/R/view_datasets_BrazilDataAPI.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/README.md | 29 + BrazilDataAPI-0.2.0/BrazilDataAPI/build/vignette.rds |binary BrazilDataAPI-0.2.0/BrazilDataAPI/inst/CITATION | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.R | 15 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.Rmd | 59 +++ BrazilDataAPI-0.2.0/BrazilDataAPI/inst/doc/BrazilDataAPI_vignette.html | 152 ++++++---- BrazilDataAPI-0.2.0/BrazilDataAPI/inst/licenses/LICENSE | 2 BrazilDataAPI-0.2.0/BrazilDataAPI/inst/licenses/LICENSE.md | 21 + BrazilDataAPI-0.2.0/BrazilDataAPI/man/BrazilDataAPI.Rd | 8 BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_child_mortality.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_cpi.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_energy_use.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_gdp.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_holidays.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_hospital_beds.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_life_expectancy.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_literacy_rate.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_population.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_brazil_unemployment.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/man/get_country_info_br.Rd |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brasil_females_df.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brasil_males_df.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Brazil_films_df.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-Yellow_Fever_list.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_banks.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cep.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_child_mortality.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cnpj.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_cpi.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_energy_use.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_gdp.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_holidays.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_hospital_beds.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_life_expectancy.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_literacy_rate.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_municipalities.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_population.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_rate_name.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_unemployment.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_brazil_vehicle_brands.R | 49 ++- BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-get_country_info_br.R |only BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-manaus_ts.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-sp_emission_factors_df.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/tests/testthat/test-view_datasets_BrazilDataAPI.R | 4 BrazilDataAPI-0.2.0/BrazilDataAPI/vignettes/BrazilDataAPI_vignette.Rmd | 59 +++ 74 files changed, 492 insertions(+), 200 deletions(-)
Title: Variational Mode Decomposition
Description: 'RcppArmadillo' implementation for the Matlab code of the 'Variational Mode Decomposition' and 'Two-Dimensional Variational Mode Decomposition'. For more information, see (i) 'Variational Mode Decomposition' by K. Dragomiretskiy and D. Zosso in IEEE Transactions on Signal Processing, vol. 62, no. 3, pp. 531-544, Feb.1, 2014, <doi:10.1109/TSP.2013.2288675>; (ii) 'Two-Dimensional Variational Mode Decomposition' by Dragomiretskiy, K., Zosso, D. (2015), In: Tai, XC., Bae, E., Chan, T.F., Lysaker, M. (eds) Energy Minimization Methods in Computer Vision and Pattern Recognition. EMMCVPR 2015. Lecture Notes in Computer Science, vol 8932. Springer, <doi:10.1007/978-3-319-14612-6_15>.
Author: Lampros Mouselimis [aut, cre] ,
Dominique Zosso [cph] ,
Konstantin Dragomiretskiy [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between VMDecomp versions 1.0.1 dated 2022-07-04 and 1.0.2 dated 2025-09-15
DESCRIPTION | 17 MD5 | 22 NEWS.md | 5 README.md | 6 build/vignette.rds |binary inst/doc/variatonal_mode_decomposition.R | 306 ++++++------ inst/doc/variatonal_mode_decomposition.Rmd | 2 inst/doc/variatonal_mode_decomposition.html | 687 ++++++++++++++++++---------- src/Makevars | 17 src/Makevars.win | 17 src/vmd.cpp | 1 vignettes/variatonal_mode_decomposition.Rmd | 2 12 files changed, 648 insertions(+), 434 deletions(-)
Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks <doi:10.18637/jss.v098.i08>.
Author: Matteo Magnani [aut, cre],
Luca Rossi [aut] ,
Davide Vega [aut] ,
Obaida Hanteer [ctb]
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
Diff between multinet versions 4.2.2 dated 2025-04-08 and 4.3 dated 2025-09-15
DESCRIPTION | 17 ++++++++--------- MD5 | 30 +++++++++++++++++++++++++----- NEWS | 4 ++++ src/Makevars | 4 ++-- src/Makevars.win | 4 ++-- src/r_functions.cpp | 18 ++---------------- src/src/community/_impl/abacus_utils.hpp |only src/src/community/_impl/abacus_utils.ipp |only src/src/community/abacus.hpp |only src/src/community/abacus.ipp |only src/src/core/arules |only 11 files changed, 43 insertions(+), 34 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis [aut, cre] ,
Matthew Parks [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.1.5 dated 2023-01-06 and 1.1.6 dated 2025-09-15
DESCRIPTION | 15 MD5 | 26 NEWS.md | 7 README.md | 5 build/vignette.rds |binary inst/doc/binary_classification_using_the_ionosphere_data.R | 36 inst/doc/binary_classification_using_the_ionosphere_data.html | 664 ++++++-- inst/doc/image_classification_using_MNIST_CIFAR_data.R | 462 +++--- inst/doc/image_classification_using_MNIST_CIFAR_data.html | 739 ++++++---- inst/doc/regression_using_the_housing_data.R | 36 inst/doc/regression_using_the_housing_data.html | 617 +++++--- src/Makevars | 4 src/Makevars.win | 6 src/distance_metrics.cpp | 1 14 files changed, 1672 insertions(+), 946 deletions(-)
Title: A Simpler Way to Find Your Files
Description: Constructs paths to your project's files.
Declare the relative path of a file within your project with 'i_am()'.
Use the 'here()' function as a drop-in replacement for 'file.path()',
it will always locate the files relative to your project root.
Author: Kirill Mueller [aut, cre] ,
Jennifer Bryan [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between here versions 1.0.1 dated 2020-12-13 and 1.0.2 dated 2025-09-15
DESCRIPTION | 23 - MD5 | 36 +- NEWS.md | 19 + R/aaa.R | 3 R/here.R | 2 R/zzz.R | 2 README.md | 71 +++-- build/vignette.rds |binary inst/doc/here.R | 14 - inst/doc/here.Rmd | 6 inst/doc/here.html | 535 +++++++++++++++++++++++---------------- inst/doc/rmarkdown.R | 4 inst/doc/rmarkdown.html | 184 ++++++++----- man/here.Rd | 5 man/i_am.Rd | 2 man/set_here.Rd | 2 tests/testthat/_snaps/dr_here.md | 21 - tests/testthat/_snaps/i_am.md | 7 vignettes/here.Rmd | 6 19 files changed, 571 insertions(+), 371 deletions(-)