Title: Bivariate Automatic Analysis
Description: Simplify bivariate and regression analyses by automating
result generation, including summary tables, statistical tests, and
customizable graphs. It supports tests for continuous and dichotomous
data, as well as stepwise regression for linear, logistic, and Firth
penalized logistic models. While not a substitute for tailored
analysis, 'BiVariAn' accelerates workflows and is expanding features
like multilingual interpretations of results.The methods for selecting
significant statistical tests, as well as the predictor selection in
prediction functions, can be referenced in the works of Marc Kery
(2003) <doi:10.1890/0012-9623(2003)84[92:NORDIG]2.0.CO;2> and Rainer
Puhr (2017) <doi:10.1002/sim.7273>.
Author: Jose Andres Flores-Garcia [cre, aut, cph] ,
Antonio Augusto Gordillo-Moscoso [aut] ,
Jhoselin Marian Castro-Rodriguez [aut]
Maintainer: Jose Andres Flores-Garcia <andres.flores@uaslp.mx>
Diff between BiVariAn versions 1.0.1 dated 2025-03-05 and 1.0.2 dated 2025-09-16
DESCRIPTION | 24 +-- MD5 | 51 +++---- NAMESPACE | 1 NEWS.md | 2 R/auto_bar_categ.R | 166 +++++++++++------------ R/auto_bar_cont.R | 3 R/auto_bp_cont.R | 5 R/auto_dens_cont.R | 2 R/continuous_corr_test.R | 1 R/logistf_summary.R | 73 ++++------ R/step_bw_firth.R | 243 +++++++++++++++------------------- R/step_bw_p.R | 237 +++++++++++++++++---------------- README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 8 - inst/doc/bivarian-description.html | 9 - man/auto_bar_categ.Rd | 4 man/logistf_summary.Rd | 13 - man/step_bw_firth.Rd | 64 +++++--- man/step_bw_p.Rd | 43 +++--- tests/testthat/test-auto_bar_categ.R | 148 ++++++++++++-------- tests/testthat/test-auto_bar_cont.R | 2 tests/testthat/test-auto_viol_cont.R | 3 tests/testthat/test-logistf_summary.R |only tests/testthat/test-step_bw_firth.R | 82 ++++++++--- tests/testthat/test-step_bw_p.R | 70 +++++---- 27 files changed, 668 insertions(+), 590 deletions(-)
Title: Conditionally Symmetric Multidimensional Gaussian Mixture Model
Description: Implements the conditionally symmetric multidimensional Gaussian mixture model (csmGmm) for large-scale testing of composite null hypotheses in genetic association applications such as mediation analysis, pleiotropy analysis, and replication analysis. In such analyses, we typically have J sets of K test statistics where K is a small number (e.g. 2 or 3) and J is large (e.g. 1 million). For each one of the J sets, we want to know if we can reject all K individual nulls. Please see the vignette for a quickstart guide. The paper describing these methods is "Testing a Large Number of Composite Null Hypotheses Using Conditionally Symmetric Multidimensional Gaussian Mixtures in Genome-Wide Studies" by Sun R, McCaw Z, & Lin X (Journal of the American Statistical Association 2025, <doi:10.1080/01621459.2024.2422124>).
Author: Ryan Sun [aut, cre]
Maintainer: Ryan Sun <ryansun.work@gmail.com>
Diff between csmGmm versions 0.3.0 dated 2024-12-03 and 0.4.0 dated 2025-09-16
DESCRIPTION | 8 MD5 | 10 inst/doc/csmGmm_tutorial.R | 134 ++++++++++-- inst/doc/csmGmm_tutorial.Rmd | 166 +++++++++++++-- inst/doc/csmGmm_tutorial.html | 441 ++++++++++++++++++++++++++---------------- vignettes/csmGmm_tutorial.Rmd | 166 +++++++++++++-- 6 files changed, 678 insertions(+), 247 deletions(-)
Title: Stabilize Function Arguments
Description: A set of consistent, opinionated functions to quickly check
function arguments, coerce them to the desired configuration, or
deliver informative error messages when that is not possible.
Author: Jon Harmon [aut, cre, cph]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between stbl versions 0.1.1 dated 2024-05-23 and 0.2.0 dated 2025-09-16
stbl-0.1.1/stbl/R/aaa-shared-args.R |only stbl-0.1.1/stbl/R/msgs_common.R |only stbl-0.1.1/stbl/R/stabilize_arg_scalar.R |only stbl-0.1.1/stbl/R/stabilize_chr_scalar.R |only stbl-0.1.1/stbl/R/stabilize_fct_scalar.R |only stbl-0.1.1/stbl/R/stabilize_int_scalar.R |only stbl-0.1.1/stbl/R/stabilize_lgl_scalar.R |only stbl-0.1.1/stbl/R/to_chr_scalar.R |only stbl-0.1.1/stbl/R/to_fct_scalar.R |only stbl-0.1.1/stbl/R/to_int_scalar.R |only stbl-0.1.1/stbl/R/to_lgl_scalar.R |only stbl-0.1.1/stbl/man/dot-coerce-params.Rd |only stbl-0.1.1/stbl/tests/testthat/_snaps/stabilize_arg_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/stabilize_chr_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/stabilize_int_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/stabilize_lgl_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/to_chr_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/to_fct_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/to_int_scalar.md |only stbl-0.1.1/stbl/tests/testthat/_snaps/to_lgl_scalar.md |only stbl-0.1.1/stbl/tests/testthat/test-msgs_common.R |only stbl-0.1.1/stbl/tests/testthat/test-stabilize_arg_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-stabilize_chr_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-stabilize_fct_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-stabilize_int_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-stabilize_lgl_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-to_chr_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-to_fct_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-to_int_scalar.R |only stbl-0.1.1/stbl/tests/testthat/test-to_lgl_scalar.R |only stbl-0.2.0/stbl/DESCRIPTION | 26 stbl-0.2.0/stbl/MD5 | 204 +++--- stbl-0.2.0/stbl/NAMESPACE | 62 + stbl-0.2.0/stbl/NEWS.md | 22 stbl-0.2.0/stbl/R/aaa-conditions.R |only stbl-0.2.0/stbl/R/aaa-shared_params.R |only stbl-0.2.0/stbl/R/are_chr_ish.R |only stbl-0.2.0/stbl/R/are_dbl_ish.R |only stbl-0.2.0/stbl/R/are_fct_ish.R |only stbl-0.2.0/stbl/R/are_int_ish.R |only stbl-0.2.0/stbl/R/are_lgl_ish.R |only stbl-0.2.0/stbl/R/check.R | 142 +++- stbl-0.2.0/stbl/R/cls_unexported.R | 215 +++++- stbl-0.2.0/stbl/R/object_type.R | 8 stbl-0.2.0/stbl/R/regex.R |only stbl-0.2.0/stbl/R/stabilize_arg.R | 51 + stbl-0.2.0/stbl/R/stabilize_chr.R | 328 ++++++---- stbl-0.2.0/stbl/R/stabilize_dbl.R |only stbl-0.2.0/stbl/R/stabilize_fct.R | 171 +++-- stbl-0.2.0/stbl/R/stabilize_int.R | 240 +++---- stbl-0.2.0/stbl/R/stabilize_lgl.R | 157 ++-- stbl-0.2.0/stbl/R/stbl-package.R | 2 stbl-0.2.0/stbl/R/to_chr.R | 105 ++- stbl-0.2.0/stbl/R/to_dbl.R |only stbl-0.2.0/stbl/R/to_fct.R | 262 +++++-- stbl-0.2.0/stbl/R/to_int.R | 219 ++++-- stbl-0.2.0/stbl/R/to_lgl.R | 149 +++- stbl-0.2.0/stbl/R/to_null.R | 25 stbl-0.2.0/stbl/R/utils.R | 106 ++- stbl-0.2.0/stbl/README.md | 52 + stbl-0.2.0/stbl/build |only stbl-0.2.0/stbl/inst |only stbl-0.2.0/stbl/man/are_chr_ish.Rd |only stbl-0.2.0/stbl/man/are_dbl_ish.Rd |only stbl-0.2.0/stbl/man/are_fct_ish.Rd |only stbl-0.2.0/stbl/man/are_int_ish.Rd |only stbl-0.2.0/stbl/man/are_lgl_ish.Rd |only stbl-0.2.0/stbl/man/dot-apply_regex_rule.Rd |only stbl-0.2.0/stbl/man/dot-are_not_dbl_ish_chr.Rd |only stbl-0.2.0/stbl/man/dot-are_not_fct_ish_chr.Rd |only stbl-0.2.0/stbl/man/dot-are_not_int_ish_chr.Rd |only stbl-0.2.0/stbl/man/dot-check_cast_failures.Rd |only stbl-0.2.0/stbl/man/dot-check_chr_to_int_failures.Rd |only stbl-0.2.0/stbl/man/dot-check_na.Rd |only stbl-0.2.0/stbl/man/dot-check_scalar.Rd |only stbl-0.2.0/stbl/man/dot-check_size.Rd |only stbl-0.2.0/stbl/man/dot-check_value_chr.Rd |only stbl-0.2.0/stbl/man/dot-check_value_dbl.Rd |only stbl-0.2.0/stbl/man/dot-check_x_no_more_than_y.Rd |only stbl-0.2.0/stbl/man/dot-cli_escape.Rd |only stbl-0.2.0/stbl/man/dot-cli_mark.Rd |only stbl-0.2.0/stbl/man/dot-coerce_fct_levels.Rd |only stbl-0.2.0/stbl/man/dot-coerce_fct_levels_impl.Rd |only stbl-0.2.0/stbl/man/dot-coerce_fct_to_na.Rd |only stbl-0.2.0/stbl/man/dot-compile_error_class.Rd |only stbl-0.2.0/stbl/man/dot-define_main_msg.Rd |only stbl-0.2.0/stbl/man/dot-describe_failure_chr.Rd |only stbl-0.2.0/stbl/man/dot-elements_are_cls_ish.Rd |only stbl-0.2.0/stbl/man/dot-fast_false.Rd |only stbl-0.2.0/stbl/man/dot-find_failures.Rd |only stbl-0.2.0/stbl/man/dot-glue2.Rd |only stbl-0.2.0/stbl/man/dot-has_regex_pattern.Rd |only stbl-0.2.0/stbl/man/dot-is_allowed_null.Rd |only stbl-0.2.0/stbl/man/dot-shared-params-check.Rd |only stbl-0.2.0/stbl/man/dot-shared-params.Rd |only stbl-0.2.0/stbl/man/dot-stabilize_cls.Rd |only stbl-0.2.0/stbl/man/dot-stabilize_cls_scalar.Rd |only stbl-0.2.0/stbl/man/dot-stbl_abort.Rd |only stbl-0.2.0/stbl/man/dot-stop_bad_levels.Rd |only stbl-0.2.0/stbl/man/dot-stop_cant_coerce.Rd |only stbl-0.2.0/stbl/man/dot-stop_incompatible.Rd |only stbl-0.2.0/stbl/man/dot-stop_must.Rd |only stbl-0.2.0/stbl/man/dot-stop_null.Rd |only stbl-0.2.0/stbl/man/dot-to_cls_from_fct.Rd |only stbl-0.2.0/stbl/man/dot-to_cls_from_list.Rd |only stbl-0.2.0/stbl/man/dot-to_cls_scalar.Rd |only stbl-0.2.0/stbl/man/dot-to_null.Rd |only stbl-0.2.0/stbl/man/dot-to_num_from_complex.Rd |only stbl-0.2.0/stbl/man/grapes-and-and-grapes.Rd |only stbl-0.2.0/stbl/man/reexports.Rd | 2 stbl-0.2.0/stbl/man/regex_must_match.Rd |only stbl-0.2.0/stbl/man/regex_must_not_match.Rd |only stbl-0.2.0/stbl/man/stabilize_arg.Rd | 35 - stbl-0.2.0/stbl/man/stabilize_chr.Rd | 63 + stbl-0.2.0/stbl/man/stabilize_dbl.Rd |only stbl-0.2.0/stbl/man/stabilize_fct.Rd | 56 - stbl-0.2.0/stbl/man/stabilize_int.Rd | 88 +- stbl-0.2.0/stbl/man/stabilize_lgl.Rd | 42 - stbl-0.2.0/stbl/man/stbl-package.Rd | 6 stbl-0.2.0/stbl/tests/testthat/_snaps/aaa-conditions.md |only stbl-0.2.0/stbl/tests/testthat/_snaps/check.md |only stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_arg.md | 86 ++ stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_chr.md | 137 +++- stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_dbl.md |only stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_fct.md |only stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_int.md | 34 - stbl-0.2.0/stbl/tests/testthat/_snaps/stabilize_lgl.md | 42 - stbl-0.2.0/stbl/tests/testthat/_snaps/to_chr.md | 117 +++ stbl-0.2.0/stbl/tests/testthat/_snaps/to_dbl.md |only stbl-0.2.0/stbl/tests/testthat/_snaps/to_fct.md | 88 ++ stbl-0.2.0/stbl/tests/testthat/_snaps/to_int.md | 98 +- stbl-0.2.0/stbl/tests/testthat/_snaps/to_lgl.md | 110 ++- stbl-0.2.0/stbl/tests/testthat/_snaps/to_null.md | 104 +-- stbl-0.2.0/stbl/tests/testthat/helper-wrap.R |only stbl-0.2.0/stbl/tests/testthat/test-aaa-conditions.R |only stbl-0.2.0/stbl/tests/testthat/test-are_chr_ish.R |only stbl-0.2.0/stbl/tests/testthat/test-are_dbl_ish.R |only stbl-0.2.0/stbl/tests/testthat/test-are_fct_ish.R |only stbl-0.2.0/stbl/tests/testthat/test-are_int_ish.R |only stbl-0.2.0/stbl/tests/testthat/test-are_lgl_ish.R |only stbl-0.2.0/stbl/tests/testthat/test-check.R |only stbl-0.2.0/stbl/tests/testthat/test-cls_unexported.R |only stbl-0.2.0/stbl/tests/testthat/test-object_type.R |only stbl-0.2.0/stbl/tests/testthat/test-regex.R |only stbl-0.2.0/stbl/tests/testthat/test-stabilize_arg.R | 111 ++- stbl-0.2.0/stbl/tests/testthat/test-stabilize_chr.R | 194 +++++ stbl-0.2.0/stbl/tests/testthat/test-stabilize_dbl.R |only stbl-0.2.0/stbl/tests/testthat/test-stabilize_fct.R | 38 + stbl-0.2.0/stbl/tests/testthat/test-stabilize_int.R | 50 + stbl-0.2.0/stbl/tests/testthat/test-stabilize_lgl.R | 55 + stbl-0.2.0/stbl/tests/testthat/test-to_chr.R | 156 +++- stbl-0.2.0/stbl/tests/testthat/test-to_dbl.R |only stbl-0.2.0/stbl/tests/testthat/test-to_fct.R | 118 ++- stbl-0.2.0/stbl/tests/testthat/test-to_int.R | 130 ++- stbl-0.2.0/stbl/tests/testthat/test-to_lgl.R | 206 ++++-- stbl-0.2.0/stbl/tests/testthat/test-to_null.R | 56 + stbl-0.2.0/stbl/tests/testthat/test-utils.R |only stbl-0.2.0/stbl/vignettes |only 158 files changed, 3342 insertions(+), 1426 deletions(-)
Title: Variable Selection Using a Smooth Information Criterion
Description: Implementation of the SIC epsilon-telescope method, either
using single or distributional (multiparameter) regression. Includes classical regression
with normally distributed errors and robust regression, where the errors are from
the Laplace distribution. The "smooth generalized normal distribution" is used,
where the estimation of an additional shape parameter allows the user to move
smoothly between both types of regression. See O'Neill and Burke (2022)
"Robust Distributional Regression with Automatic Variable Selection" for more details.
<doi:10.48550/arXiv.2212.07317>. This package also contains the data analyses from O'Neill and
Burke (2023). "Variable selection using a smooth information criterion for distributional
regression models". <doi:10.1007/s11222-023-10204-8>.
Author: Meadhbh O'Neill [aut, cre],
Kevin Burke [aut]
Maintainer: Meadhbh O'Neill <meadhbhon@gmail.com>
Diff between smoothic versions 1.2.0 dated 2023-08-22 and 1.2.1 dated 2025-09-16
DESCRIPTION | 15 +- MD5 | 36 +++--- NAMESPACE | 66 ++++++------ NEWS.md | 5 R/smoothic_functions.R | 10 - README.md | 2 build/vignette.rds |binary inst/doc/sgnd-boston.R | 6 - inst/doc/sgnd-boston.html | 55 +++++----- man/bostonhouseprice.Rd | 78 +++++++------- man/bostonhouseprice2.Rd | 86 ++++++++-------- man/diabetes.Rd | 72 ++++++------- man/pcancer.Rd | 76 +++++++------- man/plot_effects.Rd | 158 +++++++++++++++--------------- man/plot_paths.Rd | 2 man/predict.smoothic.Rd | 74 +++++++------- man/smoothic.Rd | 242 +++++++++++++++++++++++----------------------- man/sniffer.Rd | 66 ++++++------ man/summary.smoothic.Rd | 82 +++++++-------- 19 files changed, 569 insertions(+), 562 deletions(-)
Title: Washington Soil Health Initiative Branding
Description: Create plots and tables in a consistent style with WaSHI
(Washington Soil Health Initiative) branding. Use 'washi' to easily
style your 'ggplot2' plots and 'flextable' tables.
Author: Jadey Ryan [aut, cre],
Molly McIlquham [aut],
Dani Gelardi [aut],
Washington State Department of Agriculture [cph, fnd]
Maintainer: Jadey Ryan <jryan@agr.wa.gov>
Diff between washi versions 0.2.0 dated 2023-09-07 and 0.2.1 dated 2025-09-16
washi-0.2.0/washi/tests/testthat/_snaps/palettes |only washi-0.2.1/washi/DESCRIPTION | 14 washi-0.2.1/washi/MD5 | 56 washi-0.2.1/washi/NEWS.md | 5 washi-0.2.1/washi/R/data.R | 8 washi-0.2.1/washi/R/flextable.R | 218 washi-0.2.1/washi/R/palettes.R | 424 - washi-0.2.1/washi/R/scales.R | 141 washi-0.2.1/washi/R/theme.R | 547 - washi-0.2.1/washi/README.md | 42 washi-0.2.1/washi/data/example_data_long.rda |binary washi-0.2.1/washi/data/example_data_wide.rda |binary washi-0.2.1/washi/inst/extdata/example_data_long.csv | 3602 +++++----- washi-0.2.1/washi/inst/extdata/example_data_wide.csv | 62 washi-0.2.1/washi/man/example_data_long.Rd | 4 washi-0.2.1/washi/man/example_data_wide.Rd | 4 washi-0.2.1/washi/man/figures/README-barplot-1.png |binary washi-0.2.1/washi/man/figures/README-loom.png |only washi-0.2.1/washi/man/figures/README-plot-workflow-1.png |binary washi-0.2.1/washi/man/figures/README-scatter-plot-1.png |binary washi-0.2.1/washi/man/figures/README-table-1.png |binary washi-0.2.1/washi/man/figures/logo.png |binary washi-0.2.1/washi/man/washi_flextable.Rd | 6 washi-0.2.1/washi/man/washi_pal_setup.Rd | 4 washi-0.2.1/washi/man/washi_pal_view.Rd | 4 washi-0.2.1/washi/man/washi_scale.Rd | 4 washi-0.2.1/washi/man/washi_theme.Rd | 7 washi-0.2.1/washi/tests/testthat/_snaps/theme/washi-theme.svg | 4 washi-0.2.1/washi/tests/testthat/test-scales.R | 14 washi-0.2.1/washi/tests/testthat/test-theme.R | 172 30 files changed, 2678 insertions(+), 2664 deletions(-)
Title: 'Base Dos Dados' R Client
Description: An R interface to the 'Base dos Dados' API <https://basedosdados.org/docs/api_reference_python/>). Authenticate your project, query our tables, save data to disk and memory, all from R.
Author: Pedro Cavalcante [aut, cre],
Daniel Herszenhut [aut] ,
Rodrigo Dornelles [aut]
Maintainer: Pedro Cavalcante <pedrocolrj@gmail.com>
Diff between basedosdados versions 0.2.2 dated 2023-03-06 and 0.2.3 dated 2025-09-16
basedosdados-0.2.2/basedosdados/R/bd_connection.R |only basedosdados-0.2.2/basedosdados/R/http_client.R |only basedosdados-0.2.2/basedosdados/R/query_table.R |only basedosdados-0.2.2/basedosdados/R/utils-typed.R |only basedosdados-0.2.3/basedosdados/DESCRIPTION | 22 basedosdados-0.2.3/basedosdados/LICENSE | 4 basedosdados-0.2.3/basedosdados/MD5 | 60 - basedosdados-0.2.3/basedosdados/NAMESPACE | 112 +- basedosdados-0.2.3/basedosdados/R/bd-connection.R |only basedosdados-0.2.3/basedosdados/R/bdplyr.R | 10 basedosdados-0.2.3/basedosdados/R/download.R | 438 +++++----- basedosdados-0.2.3/basedosdados/R/http-client.R |only basedosdados-0.2.3/basedosdados/R/metadata.R | 83 + basedosdados-0.2.3/basedosdados/R/partition.R | 128 +- basedosdados-0.2.3/basedosdados/R/query-table.R |only basedosdados-0.2.3/basedosdados/R/utils-pipe.R | 28 basedosdados-0.2.3/basedosdados/R/zzzz.R | 4 basedosdados-0.2.3/basedosdados/README.md | 52 - basedosdados-0.2.3/basedosdados/man/BaseDosDadosConnection-class.Rd | 36 basedosdados-0.2.3/basedosdados/man/bd_collect.Rd | 136 +-- basedosdados-0.2.3/basedosdados/man/bd_request.Rd |only basedosdados-0.2.3/basedosdados/man/bd_write.Rd | 265 ++---- basedosdados-0.2.3/basedosdados/man/bdplyr.Rd | 208 ++-- basedosdados-0.2.3/basedosdados/man/download.Rd | 108 +- basedosdados-0.2.3/basedosdados/man/get_billing_id.Rd | 28 basedosdados-0.2.3/basedosdados/man/get_dataset_description.Rd | 48 - basedosdados-0.2.3/basedosdados/man/get_table_description.Rd | 51 - basedosdados-0.2.3/basedosdados/man/list_dataset_tables.Rd | 44 - basedosdados-0.2.3/basedosdados/man/partition_table.Rd | 74 - basedosdados-0.2.3/basedosdados/man/pipe.Rd | 40 basedosdados-0.2.3/basedosdados/man/read_sql.Rd | 100 +- basedosdados-0.2.3/basedosdados/man/set_billing_id.Rd | 70 - basedosdados-0.2.3/basedosdados/tests/testthat/test-bd_metadata.R | 170 +-- basedosdados-0.2.3/basedosdados/tests/testthat/test-bdplyr.R | 332 +++---- basedosdados-0.2.3/basedosdados/tests/testthat/test-download.R | 262 +++-- 35 files changed, 1471 insertions(+), 1442 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.19.0 dated 2025-07-13 and 0.20.0 dated 2025-09-16
DESCRIPTION | 6 MD5 | 22 - src/c/driver/postgresql/postgres_type.h | 18 src/c/driver/sqlite/sqlite.cc | 17 src/c/driver/sqlite/statement_reader.c | 56 ++ src/c/driver/sqlite/statement_reader.h | 6 src/c/driver_manager/adbc_driver_manager.cc | 522 ++++++++++++++++++++----- src/c/driver_manager/current_arch.h | 55 ++ src/c/include/arrow-adbc/adbc_driver_manager.h | 33 + src/c/vendor/nanoarrow/nanoarrow.c | 251 +++++++++++- src/c/vendor/nanoarrow/nanoarrow.h | 447 ++++++++++++++------- src/c/vendor/nanoarrow/nanoarrow.hpp | 473 +++++++++++++++------- 12 files changed, 1466 insertions(+), 440 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.19.0 dated 2025-07-13 and 0.20.0 dated 2025-09-16
DESCRIPTION | 6 MD5 | 22 - src/c/driver/postgresql/postgres_type.h | 18 src/c/driver/sqlite/sqlite.cc | 17 src/c/driver/sqlite/statement_reader.c | 56 ++ src/c/driver/sqlite/statement_reader.h | 6 src/c/driver_manager/adbc_driver_manager.cc | 522 ++++++++++++++++++++----- src/c/driver_manager/current_arch.h | 55 ++ src/c/include/arrow-adbc/adbc_driver_manager.h | 33 + src/c/vendor/nanoarrow/nanoarrow.c | 251 +++++++++++- src/c/vendor/nanoarrow/nanoarrow.h | 447 ++++++++++++++------- src/c/vendor/nanoarrow/nanoarrow.hpp | 473 +++++++++++++++------- 12 files changed, 1466 insertions(+), 440 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of blocked and split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and make analyses more reproducible. For details, see Morgan-Wall et al. (2021) <doi:10.18637/jss.v099.i01>.
Author: Tyler Morgan-Wall [aut, cre],
George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between skpr versions 1.8.2 dated 2025-04-25 and 1.9.0 dated 2025-09-16
DESCRIPTION | 8 MD5 | 98 +-- R/attribute_generation_functions.R |only R/calc_conservative_anticoef.R | 2 R/calculate_gefficiency.R | 2 R/calculate_power_curves.R | 18 R/convert_blockcolumn_rownames.R | 79 +- R/design_df_to_processed.R |only R/effectpower.R | 14 R/eval_design.R | 967 +++++++++++++++++------------------ R/eval_design_custom_mc.R | 27 R/eval_design_mc.R | 240 ++++---- R/eval_design_survival_mc.R | 172 +++--- R/gen_design.R | 201 ++++--- R/get_attribute.R | 14 R/get_moment_matrix.R | 47 + R/get_optimality.R | 20 R/methods.R | 2 R/parameterpower.R | 18 R/plot_correlations.R | 98 +-- R/plot_fds.R | 207 +++++-- R/remove_skpr_blockcols.R | 20 R/skprGUI.R | 17 man/calculate_power_curves.Rd | 40 - man/contr.simplex.Rd | 4 man/convert_blockcolumn_rownames.Rd | 9 man/convert_model_dots.Rd | 2 man/convhull_halfspace.Rd | 10 man/effectpowermc.Rd | 4 man/eval_design.Rd | 37 - man/eval_design_custom_mc.Rd | 26 man/eval_design_mc.Rd | 58 +- man/eval_design_survival_mc.Rd | 17 man/gen_design.Rd | 86 +-- man/gen_momentsmatrix_constrained.Rd | 8 man/get_attribute.Rd | 92 +-- man/get_block_groups.Rd | 2 man/get_moment_matrix.Rd | 2 man/get_optimality.Rd | 16 man/get_power_curve_output.Rd | 4 man/interpolate_convex_hull.Rd | 8 man/normalize_design.Rd | 2 man/plot_correlations.Rd | 12 man/plot_fds.Rd | 44 + man/print.skpr_eval_output.Rd | 4 man/print.skpr_power_curve_output.Rd | 4 man/remove_skpr_blockcols.Rd | 6 man/skprGUI.Rd | 8 src/genOptimalDesign.cpp | 6 src/genSplitPlotOptimalDesign.cpp | 4 src/getBlockedOptimalDesign.cpp | 6 51 files changed, 1519 insertions(+), 1273 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] ,
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
Francois Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.14.1 dated 2025-05-06 and 2.15.0 dated 2025-09-16
DESCRIPTION | 10 +- MD5 | 53 ++++++------- NAMESPACE | 56 ++++++++++++++ NEWS.md | 8 ++ R/copy_labels.R | 37 +++++++-- R/drop_unused_value_labels.R | 11 ++ R/na_values.R | 87 +++++++++++++++++++++- R/remove_attributes.R | 9 ++ R/remove_labels.R | 55 +++++++++++++- R/tagged_na.R | 21 +++++ R/to_character.R | 26 ++++++ R/to_factor.R | 49 ++++++++++++ R/to_na.R | 18 ++++ R/update_with.R | 40 ++++++++++ R/val_labels.R | 113 +++++++++++++++++++++++++++-- R/var_label.R | 60 +++++++++++++-- build/vignette.rds |binary man/copy_labels.Rd | 4 - man/drop_unused_value_labels.Rd | 2 man/na_values.Rd | 4 - man/remove_labels.Rd | 2 man/tagged_na_to_user_na.Rd | 2 man/to_character.Rd | 11 ++ man/to_factor.Rd | 18 ++++ man/update_variable_labels_with.Rd | 3 man/val_labels.Rd | 6 - man/var_label.Rd | 26 ++++-- tests/testthat/test-survey-compatibility.R |only 28 files changed, 651 insertions(+), 80 deletions(-)
Title: Robust Estimators for Multi-Group and Spatial Data
Description: Estimation of robust estimators for multi-group and spatial data including the casewise robust Spatially Smoothed Minimum Regularized Determinant (ssMRCD) estimator and its usage for local outlier detection as described in Puchhammer and Filzmoser (2023) <doi:10.1080/10618600.2023.2277875> as well as for sparse robust PCA for multi-source data described in Puchhammer, Wilms and Filzmoser (2024) <doi:10.48550/arXiv.2407.16299>. Moreover, a cellwise robust multi-group Gaussian mixture model (MG-GMM) is implemented as described in Puchhammer, Wilms and Filzmoser (2024) <doi:10.48550/arXiv.2504.02547>. Included are also complementary visualization and parameter tuning tools.
Author: Patricia Puchhammer [aut, cre, cph],
Peter Filzmoser [aut]
Maintainer: Patricia Puchhammer <patricia.puchhammer@tuwien.ac.at>
Diff between ssMRCD versions 2.0.0 dated 2025-09-11 and 2.0.1 dated 2025-09-16
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- R/SRPCAMS.R | 11 +++++++---- R/SRPCAMS_helpers.R | 14 ++++++++------ R/SRPCAMS_internal.R | 4 ++++ R/locOuts.R | 2 +- R/ssMRCD.R | 3 ++- R/ssMRCD_methods.R | 2 +- inst/doc/SRPCAMS.html | 17 ++--------------- man/msPCA.Rd | 9 ++++++--- man/residuals.ssMRCD.Rd | 2 +- man/scores.Rd | 14 ++++++++------ man/ssMRCD.Rd | 3 ++- src/cellMGGMM.cpp | 38 ++++++++++++++++++-------------------- 14 files changed, 76 insertions(+), 75 deletions(-)
Title: Visualizing and Quantifying Decision Uncertainty
Description: A suite of tools to help modelers and decision-makers effectively
interpret and communicate decision risk when evaluating multiple policy options.
It uses model outputs from uncertainty analysis for baseline scenarios and policy
alternatives to generate visual representations of uncertainty and quantitative
measures for assessing associated risks. For more details see <https://dut.ihe.ca/>.
Author: Megan Wiggins [aut, cre] ,
Marie Betsy Varughese [aut] ,
Ellen Rafferty [aut] ,
Sasha van Katwyk [aut] ,
Christopher McCabe [aut] ,
Jeff Round [aut] ,
Erin Kirwin [aut] ,
Institute of Health Economics [cph, aut],
Canadian Network for Modelling Infect [...truncated...]
Maintainer: Megan Wiggins <mwiggins@ihe.ca>
Diff between DUToolkit versions 1.0.0 dated 2025-09-14 and 1.0.1 dated 2025-09-16
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NEWS.md | 11 +++++ inst/doc/Fan_Plots.html | 4 +- inst/doc/density_plots.html | 4 +- inst/doc/rain_plot.html | 2 - inst/doc/temporal_plot.html | 2 - tests/testthat/test-plot_density.R | 26 ++++++------- tests/testthat/test-plot_fan.R | 70 +++++++++++++++++------------------ tests/testthat/test-plot_raincloud.R | 29 +++++++------- tests/testthat/test-plot_temporal.R | 27 +++++++------ 11 files changed, 107 insertions(+), 94 deletions(-)
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
MOLGENIS org [cph, fnd]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
This is a re-admission after prior archival of version 3.0.0 dated 2025-07-24
Diff between DSMolgenisArmadillo versions 3.0.0 dated 2025-07-24 and 3.0.1 dated 2025-09-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ tests/testthat/test-ArmadilloOAuth.R | 20 +++++++++++++------- 4 files changed, 22 insertions(+), 13 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Detection and Attribution Analysis of Climate Change
Description: Detection and attribution of climate change using methods including optimal fingerprinting via
generalized total least squares or an estimating equation approach (Li et al., 2025,
<doi:10.1175/JCLI-D-24-0193.1>; Ma et al., 2023, <doi:10.1175/JCLI-D-22-0681.1>).
Provides shrinkage estimators for the covariance matrix following
Ledoit and Wolf (2004, <doi:10.1016/S0047-259X(03)00096-4>) and
Ledoit and Wolf (2017, <doi:10.2139/ssrn.2383361>).
Author: Yan Li [aut, cre],
Kun Chen [aut],
Jun Yan [aut]
Maintainer: Yan Li <yan.4.li@uconn.edu>
This is a re-admission after prior archival of version 0.0-6 dated 2025-01-24
Diff between dacc versions 0.0-6 dated 2025-01-24 and 0.0-7 dated 2025-09-16
DESCRIPTION | 18 MD5 | 17 NAMESPACE | 2 R/fingerprint.R | 73 +++- R/fingerprintCEE.R | 956 ++++++++++++++++++++++++++--------------------------- R/fingerprintTLS.R | 931 ++++++++++++++++++++++++++------------------------- R/fingerprintTS.R | 425 +++++++++++------------ R/fpPrep.R | 4 inst |only man/fingerprint.Rd | 259 +++++++------- 10 files changed, 1388 insertions(+), 1297 deletions(-)
Title: Proportional Testing for Colocalisation Analysis
Description: Colocalisation analysis tests whether two traits share a causal
genetic variant in a specified genomic region. Proportional testing for
colocalisation has been previously proposed
[Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to
overcome barriers to its adoption. Its use is complementary to the fine-
mapping based colocalisation method in the 'coloc' package, and may be used in
particular to identify false "H3" conclusions in 'coloc'.
Author: Chris Wallace [aut, cre]
Maintainer: Chris Wallace <cew54@cam.ac.uk>
Diff between colocPropTest versions 0.9.2 dated 2025-09-08 and 0.9.3 dated 2025-09-16
DESCRIPTION | 8 +++---- MD5 | 13 ++++++------ R/proportional.R | 46 ++++++++++++++++++++++++++----------------- build/vignette.rds |binary inst/CITATION |only inst/doc/introduction.html | 4 +-- man/colocPropTest-package.Rd | 4 +-- man/run_proptests.Rd | 45 +++++++++++++++++++++++++----------------- 8 files changed, 70 insertions(+), 50 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut],
Ioanna Nika [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 2.1.1 dated 2025-07-10 and 2.2.0 dated 2025-09-16
CDMConnector-2.1.1/CDMConnector/tests/testthat/test-db-dplyr.R |only CDMConnector-2.1.1/CDMConnector/tests/testthat/test-zzz-DBI.R |only CDMConnector-2.1.1/CDMConnector/tests/testthat/test-zzz-dplyr.R |only CDMConnector-2.2.0/CDMConnector/DESCRIPTION | 8 CDMConnector-2.2.0/CDMConnector/MD5 | 76 +- CDMConnector-2.2.0/CDMConnector/NAMESPACE | 2 CDMConnector-2.2.0/CDMConnector/NEWS.md | 10 CDMConnector-2.2.0/CDMConnector/R/Eunomia.R | 15 CDMConnector-2.2.0/CDMConnector/R/cdm.R | 27 - CDMConnector-2.2.0/CDMConnector/R/compute.R | 23 CDMConnector-2.2.0/CDMConnector/R/dateadd.R | 9 CDMConnector-2.2.0/CDMConnector/R/dbSource.R | 28 - CDMConnector-2.2.0/CDMConnector/R/generateCohortSet.R | 71 +- CDMConnector-2.2.0/CDMConnector/R/summariseQuantile.R | 2 CDMConnector-2.2.0/CDMConnector/R/utils.R | 224 +++++++- CDMConnector-2.2.0/CDMConnector/build/vignette.rds |binary CDMConnector-2.2.0/CDMConnector/inst/doc/a01_getting-started.html | 129 ++--- CDMConnector-2.2.0/CDMConnector/inst/doc/a02_cohorts.html | 98 +-- CDMConnector-2.2.0/CDMConnector/inst/doc/a03_dbplyr.html | 14 CDMConnector-2.2.0/CDMConnector/inst/doc/a04_DBI_connection_examples.R | 134 ++++- CDMConnector-2.2.0/CDMConnector/inst/doc/a04_DBI_connection_examples.Rmd | 182 ++++++- CDMConnector-2.2.0/CDMConnector/inst/doc/a04_DBI_connection_examples.html | 254 +++++++--- CDMConnector-2.2.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 4 CDMConnector-2.2.0/CDMConnector/man/computeDataHashByTable.Rd |only CDMConnector-2.2.0/CDMConnector/man/snapshot.Rd | 4 CDMConnector-2.2.0/CDMConnector/tests/testthat/old_tests/test-zzz-DBI.R |only CDMConnector-2.2.0/CDMConnector/tests/testthat/old_tests/test-zzz-dplyr.R |only CDMConnector-2.2.0/CDMConnector/tests/testthat/setup.R | 71 +- CDMConnector-2.2.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 9 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-03-db-generateCohortSet.R | 14 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-04-db-generateConceptCohortSet.R | 15 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-10-db-summariseQuantile.R | 24 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-12-db-dplyr.R | 30 + CDMConnector-2.2.0/CDMConnector/tests/testthat/test-Eunomia.R | 2 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-db-utils.R | 19 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-deprecations.R | 1 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-memory-issue.R | 1 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-omopgenerics.R | 1 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-pool.R | 1 CDMConnector-2.2.0/CDMConnector/tests/testthat/test-writePrefixDropUseCase.R | 178 +++---- CDMConnector-2.2.0/CDMConnector/tests/testthat/test-write_prefix.r | 1 CDMConnector-2.2.0/CDMConnector/vignettes/a04_DBI_connection_examples.Rmd | 182 ++++++- 42 files changed, 1385 insertions(+), 478 deletions(-)
Title: Bias Reduction in Binomial-Response Generalized Linear Models
Description: Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm versions 0.7.2 dated 2021-04-22 and 0.7.3 dated 2025-09-16
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- inst/CHANGES | 4 ++++ man/brglm.Rd | 16 ++++++++-------- man/profile.brglm.Rd | 2 +- 5 files changed, 22 insertions(+), 17 deletions(-)
Title: Statistics Netherlands (CBS) Open Data API Client
Description: The data and meta data from Statistics
Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses
the open data API of Statistics Netherlands.
Author: Edwin de Jonge [aut, cre],
Sara Houweling [ctb]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between cbsodataR versions 1.1 dated 2024-09-25 and 1.2.1 dated 2025-09-16
DESCRIPTION | 7 ++++--- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 9 +++++++++ R/cbs_download_data.R | 5 +++-- R/cbs_download_meta.R | 3 ++- R/cbs_get_data.R | 11 ++++++----- R/cbs_get_meta.R | 2 +- R/cbsopendata.R | 24 ++++++++++++++++++++++++ R/get-meta.R | 2 +- build/vignette.rds |binary inst/doc/cbsodata.html | 9 +++++---- inst/doc/maps.html | 9 +++++---- man/cbs_download_data.Rd | 29 ++++++++++++++++++++++++++++- man/cbs_download_meta.Rd | 29 ++++++++++++++++++++++++++++- man/cbs_get_data.Rd | 29 ++++++++++++++++++++++++++++- man/cbsodataR-package.Rd | 27 +++++++++++++++++++++++++++ man/download_data-deprecated.Rd | 29 ++++++++++++++++++++++++++++- man/download_meta-deprecated.Rd | 29 ++++++++++++++++++++++++++++- man/get_data-deprecated.Rd | 29 ++++++++++++++++++++++++++++- 19 files changed, 273 insertions(+), 45 deletions(-)
Title: Beta Kernel Process Modeling
Description: Implements the Beta Kernel Process (BKP) for nonparametric modeling of spatially varying binomial probabilities, together with its extension, the Dirichlet Kernel Process (DKP), for categorical or multinomial data.
The package provides functions for model fitting, predictive inference with uncertainty quantification, posterior simulation, and visualization in one-and two-dimensional input spaces.
Multiple kernel functions (Gaussian, Matern 5/2, and Matern 3/2) are supported, with hyperparameters optimized through multi-start gradient-based search.
For more details, see Zhao, Qing, and Xu (2025) <doi:10.48550/arXiv.2508.10447>.
Author: Jiangyan Zhao [cre, aut],
Kunhai Qing [aut],
Jin Xu [aut]
Maintainer: Jiangyan Zhao <zhaojy2017@126.com>
Diff between BKP versions 0.1.1 dated 2025-08-19 and 0.2.0 dated 2025-09-16
BKP-0.1.1/BKP/R/get_prior_dkp.R |only BKP-0.1.1/BKP/R/loss_fun_dkp.R |only BKP-0.1.1/BKP/man/figures/elapsed_time.pdf |only BKP-0.1.1/BKP/man/figures/ex1.pdf |only BKP-0.1.1/BKP/man/figures/ex1_sim.pdf |only BKP-0.1.1/BKP/man/figures/ex1class001.pdf |only BKP-0.1.1/BKP/man/figures/ex1class2.pdf |only BKP-0.1.1/BKP/man/figures/ex2.pdf |only BKP-0.1.1/BKP/man/figures/ex2_sim.pdf |only BKP-0.1.1/BKP/man/figures/ex3.pdf |only BKP-0.1.1/BKP/man/figures/ex3_true.pdf |only BKP-0.1.1/BKP/man/figures/ex4.pdf |only BKP-0.1.1/BKP/man/figures/ex4LGP.pdf |only BKP-0.1.1/BKP/man/figures/ex4roc.pdf |only BKP-0.1.1/BKP/man/figures/ex4rocLGP.pdf |only BKP-0.1.1/BKP/man/figures/ex5.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class1.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class1_true.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class2.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class2_true.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class3.pdf |only BKP-0.1.1/BKP/man/figures/ex6_class3_true.pdf |only BKP-0.1.1/BKP/man/figures/ex7.pdf |only BKP-0.1.1/BKP/man/figures/ex7LGP.pdf |only BKP-0.1.1/BKP/man/figures/ex7roc.pdf |only BKP-0.1.1/BKP/man/figures/ex7rocLGP.pdf |only BKP-0.1.1/BKP/man/fit.BKP.Rd |only BKP-0.1.1/BKP/man/fit.DKP.Rd |only BKP-0.1.1/BKP/man/get_prior_dkp.Rd |only BKP-0.1.1/BKP/man/loss_fun_dkp.Rd |only BKP-0.1.1/BKP/tests/testthat/test-get_prior_dkp.R |only BKP-0.1.1/BKP/tests/testthat/test-loss_fun_dkp.R |only BKP-0.2.0/BKP/DESCRIPTION | 13 BKP-0.2.0/BKP/MD5 | 146 +- BKP-0.2.0/BKP/NAMESPACE | 26 BKP-0.2.0/BKP/NEWS.md | 14 BKP-0.2.0/BKP/R/BKP-package.R | 43 BKP-0.2.0/BKP/R/fit_BKP.R | 477 ++++---- BKP-0.2.0/BKP/R/fit_DKP.R | 446 ++++---- BKP-0.2.0/BKP/R/fitted_BKP.R |only BKP-0.2.0/BKP/R/fitted_DKP.R |only BKP-0.2.0/BKP/R/get_prior.R | 305 +++-- BKP-0.2.0/BKP/R/kernel_matrix.R | 295 ++--- BKP-0.2.0/BKP/R/loss_fun.R | 216 ++-- BKP-0.2.0/BKP/R/parameter_BKP.R |only BKP-0.2.0/BKP/R/parameter_DKP.R |only BKP-0.2.0/BKP/R/plot_BKP.R | 163 +-- BKP-0.2.0/BKP/R/plot_DKP.R | 117 +- BKP-0.2.0/BKP/R/predict_BKP.R | 411 ++++--- BKP-0.2.0/BKP/R/predict_DKP.R | 304 +++-- BKP-0.2.0/BKP/R/print_BKP.R | 322 ++++- BKP-0.2.0/BKP/R/print_DKP.R | 457 ++++++-- BKP-0.2.0/BKP/R/quantile_BKP.R |only BKP-0.2.0/BKP/R/quantile_DKP.R |only BKP-0.2.0/BKP/R/simulate_BKP.R | 358 +++--- BKP-0.2.0/BKP/R/simulate_DKP.R | 157 +- BKP-0.2.0/BKP/R/summary_BKP.R | 221 ++-- BKP-0.2.0/BKP/R/summary_DKP.R | 54 - BKP-0.2.0/BKP/R/utils.R | 138 +- BKP-0.2.0/BKP/README.md | 2 BKP-0.2.0/BKP/inst/CITATION | 44 BKP-0.2.0/BKP/inst/doc/vignettes.R | 719 +++++++++++++ BKP-0.2.0/BKP/inst/doc/vignettes.Rmd | 1188 ++++++++++++++++++---- BKP-0.2.0/BKP/inst/doc/vignettes.pdf |binary BKP-0.2.0/BKP/man/BKP-package.Rd | 36 BKP-0.2.0/BKP/man/fit_BKP.Rd |only BKP-0.2.0/BKP/man/fit_DKP.Rd |only BKP-0.2.0/BKP/man/fitted.Rd |only BKP-0.2.0/BKP/man/get_prior.Rd | 118 +- BKP-0.2.0/BKP/man/loss_fun.Rd | 71 - BKP-0.2.0/BKP/man/parameter.Rd |only BKP-0.2.0/BKP/man/plot.Rd | 93 + BKP-0.2.0/BKP/man/predict.Rd | 134 +- BKP-0.2.0/BKP/man/print.Rd | 99 + BKP-0.2.0/BKP/man/quantile.Rd |only BKP-0.2.0/BKP/man/simulate.Rd | 102 + BKP-0.2.0/BKP/man/summary.Rd | 62 - BKP-0.2.0/BKP/tests/testthat/Rplots.pdf |only BKP-0.2.0/BKP/tests/testthat/test-fit_BKP.R | 196 +-- BKP-0.2.0/BKP/tests/testthat/test-fit_DKP.R | 265 ++-- BKP-0.2.0/BKP/tests/testthat/test-fitted_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-fitted_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-get_prior.R | 131 +- BKP-0.2.0/BKP/tests/testthat/test-kernel_matrix.R | 114 -- BKP-0.2.0/BKP/tests/testthat/test-loss_fun.R | 74 + BKP-0.2.0/BKP/tests/testthat/test-parameter_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-parameter_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-plot_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-plot_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-predict_BKP.R | 95 + BKP-0.2.0/BKP/tests/testthat/test-predict_DKP.R | 111 +- BKP-0.2.0/BKP/tests/testthat/test-print_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-print_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-quantile_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-quantile_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-simualte_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-simulate_BKP.R | 125 +- BKP-0.2.0/BKP/tests/testthat/test-simulate_DKP.R | 18 BKP-0.2.0/BKP/tests/testthat/test-summary_BKP.R |only BKP-0.2.0/BKP/tests/testthat/test-summary_DKP.R |only BKP-0.2.0/BKP/tests/testthat/test-utils.R |only BKP-0.2.0/BKP/vignettes/refs.bib | 897 ++++++++-------- BKP-0.2.0/BKP/vignettes/vignettes.Rmd | 1188 ++++++++++++++++++---- 103 files changed, 7214 insertions(+), 3351 deletions(-)
Title: Rapid Asynchronous and Distributed Computing
Description: Package to tackle large-scale problems asynchronously across
a distributed network. Employing a database centric model, rush
enables workers to communicate tasks and their results over a shared
'Redis' database. Key features include low task overhead, efficient
caching, and robust error handling. The package powers the
asynchronous optimization algorithms in the 'bbotk' and 'mlr3tuning'
packages.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between rush versions 0.3.0 dated 2025-07-31 and 0.3.1 dated 2025-09-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 2 ++ R/Rush.R | 14 ++++++++------ man/Rush.Rd | 13 ++++++++----- 5 files changed, 27 insertions(+), 20 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] ,
Speros Kokenes [cph] ,
Eric Shull [cph] ,
Lee Thomason [cph] ,
Vladimir Agafonkin [cph] ,
Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.9.0 dated 2025-08-18 and 0.9.1 dated 2025-09-16
DESCRIPTION | 10 +-- MD5 | 38 +++++++-------- NEWS.md | 9 +++ R/facet_interactive.R | 2 R/geom_boxplot_interactive.R | 88 +++++++++++++++++----------------- R/geom_col_interactive.R | 11 +++- R/geom_crossbar_interactive.R | 10 +++ R/geom_errorbar_interactive.R | 2 R/geom_errorbarh_interactive.R | 28 ++++++----- R/geom_linerange_interactive.R | 6 +- R/geom_pointrange_interactive.R | 31 +++++------- R/geom_violin_interactive.R | 67 +++++--------------------- R/tracers.R | 2 R/utils_ggplot2.R | 2 man/geom_abline_interactive.Rd | 2 man/geom_crossbar_interactive.Rd | 2 man/geom_errorbarh_interactive.Rd | 15 ----- man/geom_sf_interactive.Rd | 2 man/ggiraph-ggproto.Rd | 2 man/guide_bins_interactive.Rd | 96 +++++++++++++++++++------------------- 20 files changed, 201 insertions(+), 224 deletions(-)
Title: Miscellaneous Statistical Functions Used in 'guide-R'
Description: Companion package for the manual
'guide-R : Guide pour l’analyse de données d’enquêtes avec R' available at
<https://larmarange.github.io/guide-R/>. 'guideR' implements miscellaneous
functions introduced in 'guide-R' to facilitate statistical analysis and
manipulation of survey data.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between guideR versions 0.4.0 dated 2025-04-22 and 0.4.1 dated 2025-09-16
DESCRIPTION | 11 +++---- MD5 | 12 +++---- NEWS.md | 10 +++++- R/install_dependencies.R | 24 +++++++++++---- inst/WORDLIST | 2 - man/grouped_tbl_pivot_wider.Rd | 2 - man/install_dependencies.Rd | 62 +++++++++++++++++++++-------------------- 7 files changed, 72 insertions(+), 51 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.4 dated 2025-06-16 and 1.1.5 dated 2025-09-16
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/executeChecks.R | 1 + R/mockDrugExposure.R | 2 +- inst/doc/DrugSig.html | 2 +- inst/doc/IntroductionToDrugExposureDiagnostics.html | 11 +++++------ inst/shiny/ResultsExplorer/utils.R | 1 + tests/testthat/test-SyntheaSqlServer.R | 2 +- tests/testthat/test-checkTimeBetween.R | 8 ++++---- 10 files changed, 30 insertions(+), 25 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Scalable Bayesian Disease Mapping Models for High-Dimensional
Data
Description: Implements several spatial and spatio-temporal scalable disease mapping models for high-dimensional count data using the INLA technique for approximate Bayesian inference in latent Gaussian models (Orozco-Acosta et al., 2021 <doi:10.1016/j.spasta.2021.100496>; Orozco-Acosta et al., 2023 <doi:10.1016/j.cmpb.2023.107403> and Vicente et al., 2023 <doi:10.1007/s11222-023-10263-x>). The creation and develpment of this package has been supported by Project MTM2017-82553-R (AEI/FEDER, UE) and Project PID2020-113125RB-I00/MCIN/AEI/10.13039/501100011033. It has also been partially funded by the Public University of Navarra (project PJUPNA2001).
Author: Aritz Adin [aut, cre] ,
Erick Orozco-Acosta [aut] ,
Maria Dolores Ugarte [aut]
Maintainer: Aritz Adin <aritz.adin@unavarra.es>
Diff between bigDM versions 0.5.6 dated 2025-03-25 and 0.5.7 dated 2025-09-16
DESCRIPTION | 16 +++++---- MD5 | 24 +++++++------- NEWS | 3 + R/CAR_INLA.R | 52 +++++++++++++++++++++++++------ R/MCAR_INLA.R | 2 - R/STCAR_INLA.R | 48 +++++++++++++++++++++++------ R/divide_carto.R | 11 +++++- R/mergeINLA.R | 89 ++++++++++++++++++++++++++++++++++++++---------------- README.md | 7 +++- build/partial.rdb |binary inst/CITATION | 6 +-- man/CAR_INLA.Rd | 4 +- man/STCAR_INLA.Rd | 2 - 13 files changed, 189 insertions(+), 75 deletions(-)
Title: Data Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Data menu includes interfaces for loading, saving,
viewing, visualizing, summarizing, transforming, and combining data. It also
contains functionality to generate reproducible reports of the analyses
conducted in the application.
Author: Vincent Nijs [aut, cre],
Niklas von Hertzen [aut]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.data versions 1.6.7 dated 2024-10-23 and 1.6.8 dated 2025-09-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/radiant.R | 14 ++++++++++---- inst/app/radiant.R | 8 ++++---- 5 files changed, 27 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-03 0.6.3
2025-09-02 0.6.2
2025-02-24 0.6.0
2024-10-17 0.5.0
2023-10-24 0.3.0
2022-08-18 0.1.5
2022-07-06 0.1.0
Title: Statistical Power and Sample Size Calculation Tools
Description: The 'pwrss' R package provides flexible and comprehensive functions for
statistical power and minimum required sample size calculations across a wide
range of commonly used hypothesis tests in psychological, biomedical, and
social sciences.
Author: Metin Bulus [aut, cre],
Sebastian Jentschke [ctb]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between pwrss versions 0.3.1 dated 2023-04-11 and 1.0.0 dated 2025-09-16
pwrss-0.3.1/pwrss/R/pwrss.R |only pwrss-0.3.1/pwrss/README.md |only pwrss-0.3.1/pwrss/man/0-Generic-Chi-square-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-F-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-t-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-z-Test.Rd |only pwrss-0.3.1/pwrss/man/1-One-Correlation.Rd |only pwrss-0.3.1/pwrss/man/1-One-Mean.Rd |only pwrss-0.3.1/pwrss/man/1-One-Proportion.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Correlations.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Groups-NP.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Means.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Proportions.Rd |only pwrss-0.3.1/pwrss/man/4-Indirect-Effect-in-Mediation.Rd |only pwrss-0.3.1/pwrss/man/4-Linear-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/4-Linear-Regression-Rsquared.Rd |only pwrss-0.3.1/pwrss/man/4-Logistic-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/4-Poisson-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/5-ANOVA-and-ANCOVA.Rd |only pwrss-0.3.1/pwrss/man/5-GOF-or-Independence.Rd |only pwrss-0.3.1/pwrss/man/5-Repeated-Measures-ANOVA.Rd |only pwrss-0.3.1/pwrss/man/6-Plot-Type-I-and-II-Errors.Rd |only pwrss-1.0.0/pwrss/DESCRIPTION | 23 pwrss-1.0.0/pwrss/MD5 | 118 pwrss-1.0.0/pwrss/NAMESPACE | 99 pwrss-1.0.0/pwrss/NEWS.md | 51 pwrss-1.0.0/pwrss/R/ancova.R |only pwrss-1.0.0/pwrss/R/anova.mixed.R |only pwrss-1.0.0/pwrss/R/checks.R |only pwrss-1.0.0/pwrss/R/correlations.R |only pwrss-1.0.0/pwrss/R/generic.binom.test.R |only pwrss-1.0.0/pwrss/R/generic.chisq.test.R |only pwrss-1.0.0/pwrss/R/generic.f.test.R |only pwrss-1.0.0/pwrss/R/generic.t.test.R |only pwrss-1.0.0/pwrss/R/generic.z.test.R |only pwrss-1.0.0/pwrss/R/means.student.R |only pwrss-1.0.0/pwrss/R/means.wilcoxon.R |only pwrss-1.0.0/pwrss/R/plot.binom.R |only pwrss-1.0.0/pwrss/R/plot.chisq.R |only pwrss-1.0.0/pwrss/R/plot.f.R |only pwrss-1.0.0/pwrss/R/plot.t.R |only pwrss-1.0.0/pwrss/R/plots.R |only pwrss-1.0.0/pwrss/R/printing.R |only pwrss-1.0.0/pwrss/R/printing.pretty.R |only pwrss-1.0.0/pwrss/R/proportions.fisher.R |only pwrss-1.0.0/pwrss/R/proportions.gof.R |only pwrss-1.0.0/pwrss/R/proportions.mcnemar.R |only pwrss-1.0.0/pwrss/R/proportions.onetwo.R |only pwrss-1.0.0/pwrss/R/regression.linear.R |only pwrss-1.0.0/pwrss/R/regression.logistic.R |only pwrss-1.0.0/pwrss/R/regression.mediation.R |only pwrss-1.0.0/pwrss/R/regression.poisson.R |only pwrss-1.0.0/pwrss/R/utils.R |only pwrss-1.0.0/pwrss/build/partial.rdb |only pwrss-1.0.0/pwrss/build/vignette.rds |binary pwrss-1.0.0/pwrss/inst/CITATION | 14 pwrss-1.0.0/pwrss/inst/WORDLIST |only pwrss-1.0.0/pwrss/inst/doc/examples.R | 1445 ++ pwrss-1.0.0/pwrss/inst/doc/examples.Rmd | 2417 +++- pwrss-1.0.0/pwrss/inst/doc/examples.html | 8360 ++++++++++++---- pwrss-1.0.0/pwrss/man/ancova.Rd |only pwrss-1.0.0/pwrss/man/ancova.contrasts.Rd |only pwrss-1.0.0/pwrss/man/ancova.factorial.contrasts.Rd |only pwrss-1.0.0/pwrss/man/ancova.keppel.Rd |only pwrss-1.0.0/pwrss/man/ancova.shieh.Rd |only pwrss-1.0.0/pwrss/man/anova.mixed.Rd |only pwrss-1.0.0/pwrss/man/conversion.cors.to.q.Rd |only pwrss-1.0.0/pwrss/man/conversion.d.to.cles.Rd |only pwrss-1.0.0/pwrss/man/conversion.f.to.etasq.Rd |only pwrss-1.0.0/pwrss/man/conversion.mcnemar.probs.Rd |only pwrss-1.0.0/pwrss/man/conversion.means.to.d.Rd |only pwrss-1.0.0/pwrss/man/conversion.probs.to.h.Rd |only pwrss-1.0.0/pwrss/man/conversion.probs.to.w.Rd |only pwrss-1.0.0/pwrss/man/conversion.rsq.to.f.Rd |only pwrss-1.0.0/pwrss/man/correlations.one.Rd |only pwrss-1.0.0/pwrss/man/correlations.steiger.Rd |only pwrss-1.0.0/pwrss/man/correlations.two.Rd |only pwrss-1.0.0/pwrss/man/figures |only pwrss-1.0.0/pwrss/man/generic.binom.test.Rd |only pwrss-1.0.0/pwrss/man/generic.chisq.test.Rd |only pwrss-1.0.0/pwrss/man/generic.f.test.Rd |only pwrss-1.0.0/pwrss/man/generic.t.test.Rd |only pwrss-1.0.0/pwrss/man/generic.z.test.Rd |only pwrss-1.0.0/pwrss/man/means.student.welch.Rd |only pwrss-1.0.0/pwrss/man/means.wilcoxon.Rd |only pwrss-1.0.0/pwrss/man/proportions.fisher.Rd |only pwrss-1.0.0/pwrss/man/proportions.gof.Rd |only pwrss-1.0.0/pwrss/man/proportions.mcnemar.Rd |only pwrss-1.0.0/pwrss/man/proportions.oneprop.Rd |only pwrss-1.0.0/pwrss/man/proportions.twoprops.Rd |only pwrss-1.0.0/pwrss/man/regression.linear.f.Rd |only pwrss-1.0.0/pwrss/man/regression.linear.t.Rd |only pwrss-1.0.0/pwrss/man/regression.logistic.Rd |only pwrss-1.0.0/pwrss/man/regression.mediation.Rd |only pwrss-1.0.0/pwrss/man/regression.poisson.Rd |only pwrss-1.0.0/pwrss/man/utils.attrition.Rd |only pwrss-1.0.0/pwrss/vignettes/app.png |binary pwrss-1.0.0/pwrss/vignettes/examples.Rmd | 2417 +++- pwrss-1.0.0/pwrss/vignettes/hex.png |binary pwrss-1.0.0/pwrss/vignettes/license.png |binary pwrss-1.0.0/pwrss/vignettes/med.png |binary 101 files changed, 11510 insertions(+), 3434 deletions(-)
More information about geospatialsuite at CRAN
Permanent link
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] ,
Vonage Holdings Corp. [ctb, cph] ,
Ian Galpin [ctb, cph] ,
Ben Gertzfield [ctb, cph]
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.13.36 dated 2024-05-03 and 9.0.14 dated 2025-09-16
dialrjars-8.13.36/dialrjars/inst/java/carrier-1.220.jar |only dialrjars-8.13.36/dialrjars/inst/java/geocoder-2.230.jar |only dialrjars-8.13.36/dialrjars/inst/java/libphonenumber-8.13.36.jar |only dialrjars-8.13.36/dialrjars/inst/java/prefixmapper-2.230.jar |only dialrjars-9.0.14/dialrjars/DESCRIPTION | 8 dialrjars-9.0.14/dialrjars/MD5 | 12 dialrjars-9.0.14/dialrjars/NEWS.md | 300 ++++++++++ dialrjars-9.0.14/dialrjars/inst/java/carrier-2.14.jar |only dialrjars-9.0.14/dialrjars/inst/java/geocoder-3.14.jar |only dialrjars-9.0.14/dialrjars/inst/java/libphonenumber-9.0.14.jar |only dialrjars-9.0.14/dialrjars/inst/java/prefixmapper-3.14.jar |only 11 files changed, 310 insertions(+), 10 deletions(-)