Title: Visualization of Viral Protein Sequence Diversity Dynamics
Description: To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.
Author: Pendy Tok [aut, cre],
Li Chuin Chong [aut],
Evgenia Chikina [aut],
Yin Cheng Chen [aut],
Mohammad Asif Khan [aut]
Maintainer: Pendy Tok <pendytok0518@gmail.com>
Diff between vDiveR versions 2.0.1 dated 2024-11-22 and 2.1.0 dated 2025-09-19
DESCRIPTION | 8 LICENSE | 4 MD5 | 75 NAMESPACE | 197 NEWS.md | 16 R/DiveR-package.R | 12 R/concat_conserved_kmer.R | 8 R/metadata_extraction.R | 316 R/plot_conservation_level.R | 435 R/plot_correlation.R | 96 R/plot_dynamics_protein.R | 402 R/plot_dynamics_proteome.R | 380 R/plot_entropy.R | 390 R/plot_time.R | 116 R/plot_world_map.R | 272 R/sample_data.R | 146 README.md | 66 inst/extdata/GISAID_EpiCoV.faa | 230 inst/extdata/NCBI_Protein.faa | 114 inst/extdata/city_mapper.csv |84914 +++++++++++++++++++-------------------- man/JSON_sample.Rd | 32 man/concat_conserved_kmer.Rd | 72 man/extract_from_GISAID.Rd | 28 man/extract_from_NCBI.Rd | 28 man/json2csv.Rd | 58 man/match_region_to_target.Rd |only man/metadata.Rd | 42 man/metadata_extraction.Rd | 52 man/plot_correlation.Rd | 96 man/plot_dynamics_protein.Rd | 88 man/plot_dynamics_proteome.Rd | 82 man/plot_entropy.Rd | 98 man/plot_time.Rd | 74 man/protein_2hosts.Rd | 70 man/proteins_1host.Rd | 70 man/vDiveR-package.Rd | 46 tests/testthat.R | 24 tests/testthat/test-concat-seq.R | 154 tests/testthat/test-json2csv.R | 108 39 files changed, 44716 insertions(+), 44703 deletions(-)
Title: Variable Selection for Model-Based Clustering of Mixed-Type Data
Set with Missing Values
Description: Full model selection (detection of the relevant features and estimation of the number of clusters) for model-based clustering (see reference here <doi:10.1007/s11222-016-9670-1>). Data to analyze can be continuous, categorical, integer or mixed. Moreover, missing values can occur and do not necessitate any pre-processing. Shiny application permits an easy interpretation of the results.
Author: Matthieu Marbac [aut],
Mohammed Sedki [aut, cre]
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>
Diff between VarSelLCM versions 2.1.3.1 dated 2020-10-14 and 2.1.3.2 dated 2025-09-19
VarSelLCM-2.1.3.1/VarSelLCM/inst/doc/VarSelLCM.pdf |only VarSelLCM-2.1.3.2/VarSelLCM/DESCRIPTION | 23 ++++++++---- VarSelLCM-2.1.3.2/VarSelLCM/MD5 | 36 +++++++++---------- VarSelLCM-2.1.3.2/VarSelLCM/R/Plot.R | 31 +++++++++------- VarSelLCM-2.1.3.2/VarSelLCM/R/VarSelLCM.R | 10 ++--- VarSelLCM-2.1.3.2/VarSelLCM/R/model.R | 2 - VarSelLCM-2.1.3.2/VarSelLCM/build/vignette.rds |binary VarSelLCM-2.1.3.2/VarSelLCM/inst/CITATION | 10 ++--- VarSelLCM-2.1.3.2/VarSelLCM/inst/doc/VarSelLCM.R | 34 ++++++++--------- VarSelLCM-2.1.3.2/VarSelLCM/inst/doc/VarSelLCM.Rmd | 2 - VarSelLCM-2.1.3.2/VarSelLCM/inst/doc/VarSelLCM.html |only VarSelLCM-2.1.3.2/VarSelLCM/man/VarSelCluster.Rd | 17 +++++++- VarSelLCM-2.1.3.2/VarSelLCM/man/VarSelLCM-package.Rd | 13 +++++- VarSelLCM-2.1.3.2/VarSelLCM/man/plot-methods.Rd | 3 - VarSelLCM-2.1.3.2/VarSelLCM/src/Makevars | 2 - VarSelLCM-2.1.3.2/VarSelLCM/src/Makevars.win | 2 - VarSelLCM-2.1.3.2/VarSelLCM/src/RcppExports.cpp | 5 ++ VarSelLCM-2.1.3.2/VarSelLCM/src/XEM.cpp | 6 +-- VarSelLCM-2.1.3.2/VarSelLCM/src/XEMPen.cpp | 6 ++- VarSelLCM-2.1.3.2/VarSelLCM/vignettes/VarSelLCM.Rmd | 2 - 20 files changed, 121 insertions(+), 83 deletions(-)
Title: Algorithms and Tools for Tabular Statistics and Hierarchical
Computations
Description: Includes general data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.8.1 dated 2025-08-18 and 1.8.2 dated 2025-09-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- NAMESPACE | 3 +++ NEWS.md | 8 ++++++++ R/DummyDuplicated.R | 23 ----------------------- R/get_colnames.R |only R/zero_col.R |only man/get_colnames.Rd |only man/zero_col.Rd |only 9 files changed, 23 insertions(+), 31 deletions(-)
Title: Monte-Carlo Methods for Simulating Luminescence Phenomena
Description: A collection of functions to simulate luminescence production in
dosimetric materials using Monte Carlo methods. Implemented are models for
delocalised transitions (e.g., Chen and McKeever (1997) <doi:10.1142/2781>),
localised transitions (e.g., Pagonis et al. (2019) <doi:10.1016/j.jlumin.2018.11.024>)
and tunnelling transitions (Jain et al. (2012) <doi:10.1088/0953-8984/24/38/385402>
and Pagonis et al. (2019) <doi:10.1016/j.jlumin.2018.11.024>).
Supported stimulation methods are thermal luminescence (TL),
continuous-wave optically stimulated luminescence (CW-OSL),
linearly-modulated optically stimulated luminescence (LM-OSL),
linearly-modulated infrared stimulated luminescence (LM-IRSL),
and isothermal luminescence (ITL or ISO-TL).
Author: Johannes Friedrich [aut, trl] ,
Sebastian Kreutzer [aut, trl, cre] ,
Vasilis Pagonis [aut] ,
Christoph Schmidt [aut] ,
Christian Laag [ctb] ,
Ena Rajovic [ctb],
Alex Roy Duncan [ctb]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@uni-heidelberg.de>
Diff between RLumCarlo versions 0.1.9 dated 2022-08-08 and 0.1.10 dated 2025-09-19
DESCRIPTION | 43 ++++---- MD5 | 78 +++++++-------- NEWS.md | 5 R/RLumCarlo-package.R | 10 + README.md | 60 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/RLumCarlo_-_Getting_started_with_RLumCarlo.pdf |binary man/RLumCarlo-package.Rd | 14 ++ man/create_ClusterSystem.Rd | 2 man/figures/README-unnamed-chunk-2-1.png |binary man/methods_RLumCarlo.Rd | 2 man/plot_RLumCarlo.Rd | 2 man/run_MC_CW_IRSL_LOC.Rd | 2 man/run_MC_CW_IRSL_TUN.Rd | 2 man/run_MC_CW_OSL_DELOC.Rd | 2 man/run_MC_ISO_DELOC.Rd | 2 man/run_MC_ISO_LOC.Rd | 2 man/run_MC_ISO_TUN.Rd | 2 man/run_MC_LM_OSL_DELOC.Rd | 2 man/run_MC_LM_OSL_LOC.Rd | 2 man/run_MC_LM_OSL_TUN.Rd | 2 man/run_MC_TL_DELOC.Rd | 2 man/run_MC_TL_LOC.Rd | 2 man/run_MC_TL_TUN.Rd | 2 src/Makevars | 4 src/Makevars.win | 4 tests/testthat/test_run_MC_CW_IRSL_LOC.R | 9 + tests/testthat/test_run_MC_CW_IRSL_TUN.R | 3 tests/testthat/test_run_MC_CW_OSL_DELOC.R | 3 tests/testthat/test_run_MC_ISO_DELOC.R | 3 tests/testthat/test_run_MC_ISO_LOC.R | 3 tests/testthat/test_run_MC_ISO_TUN.R | 4 tests/testthat/test_run_MC_LM_OSL_DELOC.R | 3 tests/testthat/test_run_MC_LM_OSL_LOC.R | 3 tests/testthat/test_run_MC_LM_OSL_TUN.R | 3 tests/testthat/test_run_MC_TL_DELOC.R | 3 tests/testthat/test_run_MC_TL_LOC.R | 3 tests/testthat/test_run_MC_TL_TUN.R | 1 vignettes/RLumCarlo_-_Getting_started_with_RLumCarlo.Rmd | 2 40 files changed, 159 insertions(+), 132 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like 'csv',
'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut] ,
Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
Shelby Bearrows [ctb],
https://github.com/mandreyel/ [cph] ,
Jukka Jylaenki [cph] ,
Mikkel Joergensen [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between vroom versions 1.6.5 dated 2023-12-05 and 1.6.6 dated 2025-09-19
vroom-1.6.5/vroom/build/vroom.pdf |only vroom-1.6.6/vroom/DESCRIPTION | 17 +++++++++-------- vroom-1.6.6/vroom/MD5 | 21 ++++++++++----------- vroom-1.6.6/vroom/NEWS.md | 4 ++++ vroom-1.6.6/vroom/README.md | 4 +++- vroom-1.6.6/vroom/build/stage23.rdb |binary vroom-1.6.6/vroom/build/vignette.rds |binary vroom-1.6.6/vroom/inst/doc/benchmarks.html | 16 ++++++++-------- vroom-1.6.6/vroom/inst/doc/vroom.R | 18 +++++++++--------- vroom-1.6.6/vroom/inst/doc/vroom.html | 11 ++++++----- vroom-1.6.6/vroom/man/vroom_fwf.Rd | 8 +++++--- vroom-1.6.6/vroom/src/iconv_file.cc | 5 +++-- 12 files changed, 57 insertions(+), 47 deletions(-)
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Description: A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
RNA-seq functionality offering the flexibility to perform either a
sequential approach (where reads are mapped separately to each genome)
or a combined approach (where reads are aligned to a single merged
genome). The user-friendly interface automates the analysis process,
providing step-by-step guidance, making it easy for users to navigate
between different analysis steps, and download intermediate results
and publication-ready plots.
Author: Carmine Fruggiero [aut, cre],
Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>
Diff between inDAGO versions 1.0.1 dated 2025-09-13 and 1.0.2 dated 2025-09-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/CombinedAlignment.R | 48 +++++++++++++++++++++++++++++++++++++++++++++--- 3 files changed, 50 insertions(+), 8 deletions(-)
Title: A Fast and Scalable Exhaustive Feature Selection Framework
Description: The goal of this package is to provide an easy to use, fast and
scalable exhaustive search framework. Exhaustive feature selections
typically require a very large number of models to be fitted and evaluated.
Execution speed and memory management are crucial factors here. This package
provides solutions for both. Execution speed is optimized by using a
multi-threaded C++ backend, and memory issues are solved by by only storing
the best results during execution and thus keeping memory usage constant.
Author: Rudolf Jagdhuber [aut, cre],
Jorge Nocedal [cph] ,
Naoaki Okazaki [cph]
Maintainer: Rudolf Jagdhuber <r.jagdhuber@gmail.com>
Diff between ExhaustiveSearch versions 1.0.1 dated 2021-01-18 and 1.0.2 dated 2025-09-19
DESCRIPTION | 8 MD5 | 32 +- NAMESPACE | 22 - NEWS.md | 22 - R/ExhaustiveSearch-package.R | 10 R/ExhaustiveSearch.R | 600 +++++++++++++++++++++--------------------- R/RcppExports.R | 14 R/print.R | 104 +++---- R/resultFunctions.R | 176 ++++++------ README.md | 298 ++++++++++---------- man/ExhaustiveSearch.Rd | 362 ++++++++++++------------- man/getFeatures.Rd | 82 ++--- man/print.ExhaustiveSearch.Rd | 52 +-- man/resultTable.Rd | 112 +++---- src/Makevars | 3 src/Makevars.win | 3 src/RcppExports.cpp | 5 17 files changed, 958 insertions(+), 947 deletions(-)
More information about ExhaustiveSearch at CRAN
Permanent link
Title: Compute Energy Landscapes
Description: Compute energy landscapes using a digital elevation model
and body mass of animals.
Author: Emilio Berti [aut, cre],
Marco Davoli [ctb],
Robert Buitenwerf [ctb],
Alexander Dyer [ctb],
Oskar L.P. Hansen [ctb],
Myriam Hirt [ctb],
Jens-Christian Svenning [ctb],
Joerdis F. Terlau [ctb],
Ulrich Brose [ctb],
Fritz Vollrath [ctb]
Maintainer: Emilio Berti <emilio.berti@idiv.de>
Diff between enerscape versions 1.1.0 dated 2024-01-29 and 1.2.0 dated 2025-09-19
DESCRIPTION | 23 ++- MD5 | 48 +++--- R/RcppExports.R | 44 +++++- R/enerscape.R | 23 +-- R/humanscape.R |only README.md | 263 +++++++++++++++++++++++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/enerscape.R | 119 +++++++++++----- inst/doc/enerscape.Rmd | 71 +++++++++ inst/doc/enerscape.html | 84 ++++++----- man/energy.Rd | 6 man/energyHuman.Rd |only man/energyscape.Rd | 6 man/energyscapeHuman.Rd |only man/enerscape.Rd | 12 - man/humanscape.Rd |only man/slopeRadiant.Rd |only src/RcppExports.cpp | 62 +++++++- src/distance.cpp |only src/distance.h | 34 ---- src/enerscape.cpp | 20 +- src/humanscape.cpp |only src/neighbours.cpp |only src/neighbours.h | 44 ------ src/slope.cpp |only src/slope.h | 36 ---- tests/testthat/test-cpp-functions.R | 2 vignettes/enerscape.Rmd | 71 +++++++++ 30 files changed, 677 insertions(+), 291 deletions(-)
Title: Two-Stage Difference-in-Differences Following Gardner (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the approach proposed by Gardner (2021) <doi:10.48550/arXiv.2207.05943>. To avoid the problems caused by OLS estimation of the Two-way Fixed Effects model, this function first estimates the fixed effects and covariates using untreated observations and then in a second stage, estimates the treatment effects.
Author: Kyle Butts [aut, cre] ,
John Gardner [aut] ,
Grant McDermott [ctb] ,
Laurent Berge [ctb]
Maintainer: Kyle Butts <buttskyle96@gmail.com>
Diff between did2s versions 1.0.2 dated 2023-04-07 and 1.2.0 dated 2025-09-19
did2s-1.0.2/did2s/R/utils.R |only did2s-1.0.2/did2s/man/figures/es.png |only did2s-1.0.2/did2s/man/figures/resid.png |only did2s-1.0.2/did2s/man/figures/twfe.png |only did2s-1.0.2/did2s/man/figures/twfe_count.png |only did2s-1.0.2/did2s/man/figures/unnamed-chunk-1-1.png |only did2s-1.2.0/did2s/DESCRIPTION | 26 did2s-1.2.0/did2s/MD5 | 64 did2s-1.2.0/did2s/NAMESPACE | 2 did2s-1.2.0/did2s/NEWS.md | 4 did2s-1.2.0/did2s/R/data.R | 2 did2s-1.2.0/did2s/R/did2s.R | 303 ++-- did2s-1.2.0/did2s/R/event_study.R | 752 +++++----- did2s-1.2.0/did2s/R/gen_data.R | 153 +- did2s-1.2.0/did2s/R/honest_did.R |only did2s-1.2.0/did2s/R/zzz.R | 13 did2s-1.2.0/did2s/README.md | 247 ++- did2s-1.2.0/did2s/build/vignette.rds |binary did2s-1.2.0/did2s/data/castle.rda |binary did2s-1.2.0/did2s/data/df_het.rda |binary did2s-1.2.0/did2s/data/df_hom.rda |binary did2s-1.2.0/did2s/inst/CITATION | 15 did2s-1.2.0/did2s/inst/doc/Two-Stage-Difference-in-Differences.R | 81 - did2s-1.2.0/did2s/inst/doc/Two-Stage-Difference-in-Differences.Rmd | 77 - did2s-1.2.0/did2s/inst/doc/Two-Stage-Difference-in-Differences.html | 223 +- did2s-1.2.0/did2s/man/did2s.Rd | 33 did2s-1.2.0/did2s/man/event_study.Rd | 10 did2s-1.2.0/did2s/man/figures/README-ehec-data-est-1.png |only did2s-1.2.0/did2s/man/figures/README-plot-compare-1.png |binary did2s-1.2.0/did2s/man/figures/README-plot-df-het-1.png |binary did2s-1.2.0/did2s/man/figures/README-plot-es-1.png |binary did2s-1.2.0/did2s/man/figures/README-sensitivity-1.png |only did2s-1.2.0/did2s/man/figures/README-unnamed-chunk-3-1.png |only did2s-1.2.0/did2s/man/get_honestdid_obj_did2s.Rd |only did2s-1.2.0/did2s/man/honest_did_did2s.Rd |only did2s-1.2.0/did2s/man/robust_solve_XtX.Rd |only did2s-1.2.0/did2s/tests/testthat/test-did2s.R | 129 + did2s-1.2.0/did2s/tests/testthat/test-event-study.R | 74 did2s-1.2.0/did2s/tests/testthat/test-robust-solve.R |only did2s-1.2.0/did2s/vignettes/Two-Stage-Difference-in-Differences.Rmd | 77 - 40 files changed, 1396 insertions(+), 889 deletions(-)
Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Description: The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.
Author: Martin Sill [aut],
Thomas Hielscher [aut],
Manuela Zucknick [aut],
Natalia Becker [aut],
Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between c060 versions 0.3-1 dated 2025-08-18 and 0.4-0 dated 2025-09-19
c060-0.3-1/c060/build |only c060-0.3-1/c060/man/coef.intsearch.Rd |only c060-0.3-1/c060/man/figures/logo.png |only c060-0.3-1/c060/man/plot.summary.int.Rd |only c060-0.3-1/c060/man/predictProb.glmnet.Rd |only c060-0.4-0/c060/DESCRIPTION | 25 c060-0.4-0/c060/MD5 | 86 - c060-0.4-0/c060/NAMESPACE | 77 - c060-0.4-0/c060/NEWS.md | 8 c060-0.4-0/c060/R/EPSGO.R | 190 ++ c060-0.4-0/c060/R/balancedFolds.R | 49 c060-0.4-0/c060/R/c060-package.R |only c060-0.4-0/c060/R/coef_intsearch.R | 19 c060-0.4-0/c060/R/peperr_glmnet.R | 299 +++ c060-0.4-0/c060/R/plot_coef_glmnet.R | 45 c060-0.4-0/c060/R/plot_summary_inter_search.R | 58 c060-0.4-0/c060/R/stabilityselection.R | 215 ++ c060-0.4-0/c060/R/summary_inter_search.R | 33 c060-0.4-0/c060/R/tune_glmnet_interval.R | 183 +- c060-0.4-0/c060/README.md | 1071 +++++++++++++- c060-0.4-0/c060/inst/CITATION | 28 c060-0.4-0/c060/inst/_pkgdown.yml |only c060-0.4-0/c060/man/EPSGO.Rd | 221 +- c060-0.4-0/c060/man/PLL.coxnet.Rd | 53 c060-0.4-0/c060/man/Plot.coef.glmnet.Rd | 60 c060-0.4-0/c060/man/Plot.peperr.curves.Rd | 68 c060-0.4-0/c060/man/aggregation.auc.Rd | 63 c060-0.4-0/c060/man/balancedFolds.Rd | 74 c060-0.4-0/c060/man/c060-package.Rd |only c060-0.4-0/c060/man/coef.sum.intsearch.Rd |only c060-0.4-0/c060/man/complexity.glmnet.Rd | 87 - c060-0.4-0/c060/man/figures/README-unnamed-chunk-13-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-42-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-43-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-44-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-45-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-46-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-5-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-50-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-6-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-7-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-8-1.png |only c060-0.4-0/c060/man/figures/README-unnamed-chunk-9-1.png |only c060-0.4-0/c060/man/fit.glmnet.Rd | 75 c060-0.4-0/c060/man/plot.stabpath.Rd | 133 - c060-0.4-0/c060/man/plot.sum.intsearc.Rd |only c060-0.4-0/c060/man/predictProb.coxnet.Rd | 70 c060-0.4-0/c060/man/stabpath.Rd | 141 - c060-0.4-0/c060/man/stabsel.Rd | 101 - c060-0.4-0/c060/man/summary.intsearch.Rd | 76 c060-0.4-0/c060/man/tune.glmnet.interval.Rd | 169 +- c060-0.4-0/c060/tests |only 52 files changed, 3003 insertions(+), 774 deletions(-)
Title: A Family of Beta Mixture Models for Clustering Beta-Valued DNA
Methylation Data
Description: A family of novel beta mixture models (BMMs) has been developed by Majumdar et al. (2022) <doi:10.48550/arXiv.2211.01938> to appositely model the beta-valued cytosine-guanine dinucleotide (CpG) sites, to objectively identify methylation state thresholds and to identify the differentially methylated CpG (DMC) sites using a model-based clustering approach. The family of beta mixture models employs different parameter constraints applicable to different study settings. The EM algorithm is used for parameter estimation, with a novel approximation during the M-step providing tractability and ensuring computational feasibility.
Author: Koyel Majumdar [aut, cre] ,
Romina Silva [aut],
Antoinette Sabrina Perry [aut],
Ronald William Watson [aut],
Andrea Rau [aut] ,
Florence Jaffrezic [aut],
Thomas Brendan Murphy [aut] ,
Isobel Claire Gormley [aut]
Maintainer: Koyel Majumdar <koyelmajumdar.phdresearch@gmail.com>
Diff between betaclust versions 1.0.4 dated 2024-09-24 and 1.0.5 dated 2025-09-19
DESCRIPTION | 23 ++- MD5 | 8 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignettes.html | 294 +++++++++++++++++++++++------------------------- 5 files changed, 159 insertions(+), 166 deletions(-)
Title: An API Client for Australian Weather and Climate Data Resources
Description: Provides automated downloading, parsing and formatting of
weather data for Australia through API endpoints provided by the
Department of Primary Industries and Regional Development (DPIRD) of
Western Australia and by the Science and Technology Division of the
Queensland Government's Department of Environment and Science (DES).
As well as the Bureau of Meteorology (BOM) of the Australian
government precis and coastal forecasts,
and downloading and importing radar and satellite imagery files.
DPIRD weather data are accessed through public APIs provided by
DPIRD, <https://www.dpird.wa.gov.au/online-tools/apis/>, providing
access to weather station data from the DPIRD weather station
network. Australia-wide weather data are based on data from the
Australian Bureau of Meteorology (BOM) data and accessed through
SILO (Scientific Information for Land Owners) Jeffrey et al. (2001)
<doi:10.1016/S1364-8152(01)00008-1>. DPIRD data are made available
under a Creative Commons Attribut [...truncated...]
Author: Rodrigo Pires [aut, cre] ,
Anna Hepworth [aut] ,
Rebecca O'Leary [aut],
Jonathan Carroll [aut] ,
James Goldie [aut] ,
Dean Marchiori [aut] ,
Paul Melloy [aut] ,
Mark Padgham [aut] ,
Hugh Parsonage [aut] ,
Keith Pembleton [ctb] ,
Maelle Salmon [ctb] . [...truncated...]
Maintainer: Rodrigo Pires <rodrigo.pires@dpird.wa.gov.au>
This is a re-admission after prior archival of version 2.0.1 dated 2025-04-16
Diff between weatherOz versions 2.0.1 dated 2025-04-16 and 2.0.2 dated 2025-09-19
DESCRIPTION | 108 ++++++++++++++-------------- MD5 | 88 +++++++++++----------- NAMESPACE | 4 + NEWS.md | 28 +++++++ R/data.R | 6 - R/find_nearby_stations.R | 6 - R/find_stations_in.R | 2 R/get_ag_bulletin.R | 4 - R/get_dpird_apsim.R | 2 R/get_dpird_availability.R | 2 R/get_dpird_extremes.R | 2 R/get_dpird_minute.R | 2 R/get_dpird_summaries.R | 2 R/get_key.R | 2 R/get_radar_imagery.R | 1 R/get_satellite_imagery.R | 1 R/get_stations_metadata.R | 2 R/internal_functions.R | 1 R/query_dpird_api.R | 2 README.md | 14 +-- inst/doc/use_case.Rmd | 2 inst/doc/use_case.html | 14 +-- inst/doc/weatherOz.Rmd | 2 inst/doc/weatherOz.html | 15 ++- inst/doc/weatherOz_for_BOM.html | 5 - inst/doc/weatherOz_for_DPIRD.html | 5 - inst/doc/weatherOz_for_SILO.html | 5 - man/dpird_extreme_weather_values.Rd | 2 man/dpird_minute_values.Rd | 2 man/dpird_summary_values.Rd | 2 man/find_nearby_stations.Rd | 4 - man/find_stations_in.Rd | 2 man/get_ag_bulletin.Rd | 6 - man/get_dpird_apsim.Rd | 2 man/get_dpird_availability.Rd | 2 man/get_dpird_extremes.Rd | 2 man/get_dpird_minute.Rd | 2 man/get_dpird_summaries.Rd | 2 man/get_stations_metadata.Rd | 2 man/weatherOz-package.Rd | 2 tests/testthat/test-find_stations_in.R | 6 + tests/testthat/test-get_stations_metadata.R | 3 vignettes/use_case.Rmd | 2 vignettes/weatherOz.Rmd | 2 vignettes/weatherOz.Rmd.orig | 2 45 files changed, 203 insertions(+), 171 deletions(-)
Title: An Inclusive, Unifying API for Progress Updates
Description: A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will als [...truncated...]
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between progressr versions 0.15.1 dated 2024-11-22 and 0.16.0 dated 2025-09-19
progressr-0.15.1/progressr/inst/doc/progressr-intro.html |only progressr-0.15.1/progressr/inst/doc/progressr-intro.md |only progressr-0.15.1/progressr/vignettes/progressr-intro.md |only progressr-0.16.0/progressr/DESCRIPTION | 14 - progressr-0.16.0/progressr/MD5 | 116 ++++++---- progressr-0.16.0/progressr/NAMESPACE | 2 progressr-0.16.0/progressr/NEWS.md | 31 ++ progressr-0.16.0/progressr/R/delays.R | 28 ++ progressr-0.16.0/progressr/R/global_progression_handler.R | 2 progressr-0.16.0/progressr/R/handler_cli.R | 3 progressr-0.16.0/progressr/R/handler_pbmcapply.R | 3 progressr-0.16.0/progressr/R/handler_progress.R | 3 progressr-0.16.0/progressr/R/handler_slowdown.R |only progressr-0.16.0/progressr/R/handler_tkprogressbar.R | 5 progressr-0.16.0/progressr/R/handler_txtprogressbar.R | 3 progressr-0.16.0/progressr/R/handler_winprogressbar.R | 8 progressr-0.16.0/progressr/R/handlers.R | 2 progressr-0.16.0/progressr/R/make_progression_handler.R | 5 progressr-0.16.0/progressr/R/progressr-package.R | 57 ++-- progressr-0.16.0/progressr/R/rstudio-console.R |only progressr-0.16.0/progressr/R/vignette_engine.R | 1 progressr-0.16.0/progressr/R/zzz.R | 6 progressr-0.16.0/progressr/build/vignette.rds |binary progressr-0.16.0/progressr/inst/WORDLIST | 27 +- progressr-0.16.0/progressr/inst/doc/progressr-01-intro.html |only progressr-0.16.0/progressr/inst/doc/progressr-01-intro.md |only progressr-0.16.0/progressr/inst/doc/progressr-11-handlers.html |only progressr-0.16.0/progressr/inst/doc/progressr-11-handlers.md |only progressr-0.16.0/progressr/inst/doc/progressr-21-map-reduce.html |only progressr-0.16.0/progressr/inst/doc/progressr-21-map-reduce.md |only progressr-0.16.0/progressr/inst/doc/progressr-22-parallel-processing.html |only progressr-0.16.0/progressr/inst/doc/progressr-22-parallel-processing.md |only progressr-0.16.0/progressr/inst/doc/progressr-25-replace-cli-with-progressr.html |only progressr-0.16.0/progressr/inst/doc/progressr-25-replace-cli-with-progressr.md |only progressr-0.16.0/progressr/inst/doc/progressr-29-debug.html |only progressr-0.16.0/progressr/inst/doc/progressr-29-debug.md |only progressr-0.16.0/progressr/inst/doc/progressr-31-knitr.html |only progressr-0.16.0/progressr/inst/doc/progressr-31-knitr.md |only progressr-0.16.0/progressr/inst/doc/progressr-91-appendix.html |only progressr-0.16.0/progressr/inst/doc/progressr-91-appendix.md |only progressr-0.16.0/progressr/man/figures/handler_cli-default.svg | 2 progressr-0.16.0/progressr/man/figures/handler_cli-format-1.svg | 2 progressr-0.16.0/progressr/man/figures/handler_pbcol-adjust-mid.svg | 2 progressr-0.16.0/progressr/man/figures/handler_pbcol-adjust-right-complete.svg | 2 progressr-0.16.0/progressr/man/figures/handler_pbcol-default.svg | 2 progressr-0.16.0/progressr/man/figures/handler_pbmcapply-default.svg | 2 progressr-0.16.0/progressr/man/figures/handler_progress-complete.svg | 2 progressr-0.16.0/progressr/man/figures/handler_progress-default.svg | 2 progressr-0.16.0/progressr/man/figures/handler_progress-format-1.svg | 2 progressr-0.16.0/progressr/man/figures/handler_progress-format-2.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-char-ansi.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-char-width-2.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-char.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-default.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-style-1.svg | 2 progressr-0.16.0/progressr/man/figures/handler_txtprogressbar-style-3.svg | 2 progressr-0.16.0/progressr/man/handler_cli.Rd | 3 progressr-0.16.0/progressr/man/handler_pbmcapply.Rd | 3 progressr-0.16.0/progressr/man/handler_progress.Rd | 3 progressr-0.16.0/progressr/man/handler_slowdown.Rd |only progressr-0.16.0/progressr/man/handler_tkprogressbar.Rd | 3 progressr-0.16.0/progressr/man/handler_txtprogressbar.Rd | 3 progressr-0.16.0/progressr/man/handler_winprogressbar.Rd | 3 progressr-0.16.0/progressr/man/handlers.Rd | 10 progressr-0.16.0/progressr/man/make_progression_handler.Rd | 3 progressr-0.16.0/progressr/man/progressr.Rd | 59 ++--- progressr-0.16.0/progressr/vignettes/progressr-01-intro.md |only progressr-0.16.0/progressr/vignettes/progressr-11-handlers.md |only progressr-0.16.0/progressr/vignettes/progressr-21-map-reduce.md |only progressr-0.16.0/progressr/vignettes/progressr-22-parallel-processing.md |only progressr-0.16.0/progressr/vignettes/progressr-25-replace-cli-with-progressr.md |only progressr-0.16.0/progressr/vignettes/progressr-29-debug.md |only progressr-0.16.0/progressr/vignettes/progressr-31-knitr.md |only progressr-0.16.0/progressr/vignettes/progressr-91-appendix.md |only 74 files changed, 280 insertions(+), 158 deletions(-)
Title: Experimental Data of Cascade Experiments in Genomics
Description: These experimental expression data (5 leukemic 'CLL' B-lymphocyte of aggressive form from 'GSE39411', <doi:10.1073/pnas.1211130110>), after B-cell receptor stimulation, are used as examples by packages such as the 'Cascade' one, a modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut] ,
Laurent Vallat [ctb],
Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between CascadeData versions 1.5 dated 2025-08-21 and 1.6 dated 2025-09-19
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/CascadeData-package.R | 2 +- README.md | 4 +++- inst/CITATION | 4 +++- man/CascadeData-package.Rd | 2 +- tests/testthat.R | 1 - 8 files changed, 28 insertions(+), 20 deletions(-)
Title: Selection, Reverse-Engineering and Prediction in Cascade
Networks
Description: A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut] ,
Laurent Vallat [ctb],
Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between Cascade versions 2.2 dated 2025-08-20 and 2.3 dated 2025-09-19
DESCRIPTION | 16 ++--- MD5 | 14 ++--- NEWS.md | 10 +++ R/Cascade-package.R | 2 README.md | 137 +++++++++++++++++++++---------------------------- inst/CITATION | 19 ++++++ inst/_pkgdown.yml | 3 + man/Cascade-package.Rd | 2 8 files changed, 108 insertions(+), 95 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.0.2-1 dated 2025-09-08 and 15.0.2-2 dated 2025-09-19
RcppArmadillo-15.0.2-1/RcppArmadillo/man/armadillo_set_seed_random.Rd |only RcppArmadillo-15.0.2-2/RcppArmadillo/ChangeLog | 30 +++ RcppArmadillo-15.0.2-2/RcppArmadillo/DESCRIPTION | 8 - RcppArmadillo-15.0.2-2/RcppArmadillo/MD5 | 39 ++-- RcppArmadillo-15.0.2-2/RcppArmadillo/R/RcppExports.R | 33 +--- RcppArmadillo-15.0.2-2/RcppArmadillo/README.md | 5 RcppArmadillo-15.0.2-2/RcppArmadillo/configure | 18 +- RcppArmadillo-15.0.2-2/RcppArmadillo/configure.ac | 2 RcppArmadillo-15.0.2-2/RcppArmadillo/inst/NEWS.Rd | 11 + RcppArmadillo-15.0.2-2/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-15.0.2-2/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-15.0.2-2/RcppArmadillo/inst/include/RcppArmadillo/interface/RcppArmadilloForward.h | 2 RcppArmadillo-15.0.2-2/RcppArmadillo/inst/include/RcppArmadillo/version/arma.h | 14 + RcppArmadillo-15.0.2-2/RcppArmadillo/inst/include/current/armadillo_bits/diskio_bones.hpp | 3 RcppArmadillo-15.0.2-2/RcppArmadillo/inst/include/current/armadillo_bits/diskio_meat.hpp | 79 ++++++---- RcppArmadillo-15.0.2-2/RcppArmadillo/inst/include/current/armadillo_bits/glue_hist_meat.hpp | 2 RcppArmadillo-15.0.2-2/RcppArmadillo/inst/skeleton/Makevars | 16 -- RcppArmadillo-15.0.2-2/RcppArmadillo/inst/skeleton/Makevars.win | 16 -- RcppArmadillo-15.0.2-2/RcppArmadillo/man/armadillo_set_seed.Rd | 42 ++--- RcppArmadillo-15.0.2-2/RcppArmadillo/man/armadillo_version.Rd | 19 +- RcppArmadillo-15.0.2-2/RcppArmadillo/src/RcppArmadillo.cpp | 36 +--- 21 files changed, 191 insertions(+), 184 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of methods for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous techniques for visualizing, analyzing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and trait data. A broad range of plotting methods for phylogenies and comparative data include (but are not restricted to) methods for mapping trait evolution on trees, for projecting trees into phenotype space or a onto a geographic map, and for visualizing correlated speciation between trees. Lastly, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for computing consensus phylogenies from a set, for simulating phylogenetic trees and data under a range of models, [...truncated...]
Author: Liam J. Revell [aut, cre]
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 2.4-4 dated 2025-01-07 and 2.5-2 dated 2025-09-19
DESCRIPTION | 8 - MD5 | 49 ++++++----- NAMESPACE | 20 +++- R/bounded_bm.R | 19 +++- R/cladebox.R |only R/ctt.R | 10 +- R/fitMk.parallel.R | 4 R/fitPagel.R | 17 +++- R/fitThresh.R | 199 ++++++++++++++++++++++++++++++++++++++++-------- R/fitcontMk.R |only R/fitgammaMk.R | 85 ++++++++++++++++++++ R/fitmultiBM.R | 37 ++++++-- R/fitmultiTrend.R |only R/phenogram.R | 17 ---- R/sim_absorbing.R |only R/utilities.R | 17 ---- man/bmPlot.Rd | 40 ++++++--- man/bounded_bm.Rd | 4 man/cladelabels.Rd | 7 + man/fitMk.Rd | 4 man/fitThresh.Rd | 11 +- man/fitcontMk.Rd |only man/fitmultiBM.Rd | 12 +- man/genSeq.Rd | 2 man/phytools-package.Rd | 2 man/plotSimmap.Rd | 2 man/reorderSimmap.Rd | 2 man/setMap.Rd | 2 28 files changed, 426 insertions(+), 144 deletions(-)
Title: Multiple Geometric Shape Point Layer for 'ggplot2'
Description: To create the multiple polygonal point layer for easily discernible shapes,
we developed the package, it is like the 'geom_point' of 'ggplot2'.
It can be used to draw the scatter plot.
Author: Shuangbin Xu [aut, cre]
Maintainer: Shuangbin Xu <xshuangbin@163.com>
Diff between ggstar versions 1.0.4 dated 2022-11-08 and 1.0.6 dated 2025-09-19
DESCRIPTION | 16 MD5 | 42 - NAMESPACE | 11 NEWS.md | 15 R/draw-key.R | 4 R/geom-star.R | 14 R/geom_star_interactive.R |only R/import.R |only R/primitive.R | 25 R/scale-identity.R | 2 R/scale-interactive.R |only R/scale-manual.R | 74 ++ R/scale-starshape.R | 5 build/vignette.rds |binary inst/doc/ggstar.R | 41 + inst/doc/ggstar.Rmd | 33 + inst/doc/ggstar.html | 1038 ++++++++++++++++++++++++++++++++++++- man/GeomInteractiveStar.Rd |only man/geom_star.Rd | 66 +- man/geom_star_interactive.Rd |only man/scale_manual.Rd | 44 + man/scale_starshape.Rd | 23 man/scale_starshape_identity.Rd | 33 - man/scale_starshape_interactive.Rd |only vignettes/ggstar.Rmd | 33 + 25 files changed, 1388 insertions(+), 131 deletions(-)
Title: Fractional Weighted Bootstrap
Description: An implementation of the fractional weighted bootstrap to be used as a drop-in for functions in
the 'boot' package. The fractional weighted bootstrap (also known as the Bayesian bootstrap) involves drawing
weights randomly that are applied to the data rather than resampling units from the data. See Xu et al. (2020)
<doi:10.1080/00031305.2020.1731599> for details.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between fwb versions 0.5.0 dated 2025-07-08 and 0.5.1 dated 2025-09-19
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 4 ++++ R/compute.ci.R | 7 ++++++- R/fwb.R | 2 +- R/set_fwb_wtype.R | 2 +- R/utils.R | 8 ++------ R/vcovFWB.R | 6 +++--- R/weighted-statistics.R | 2 +- README.md | 1 + build/stage23.rdb |binary build/vignette.rds |binary inst/doc/fwb-rep.html | 5 +++-- man/fwb.Rd | 2 +- man/set_fwb_wtype.Rd | 2 +- man/vcovFWB.Rd | 6 +++--- man/w_mean.Rd | 2 +- 17 files changed, 49 insertions(+), 42 deletions(-)
Title: Harness ArcGIS Data Services
Description: Enables users of 'ArcGIS Enterprise', 'ArcGIS Online', or
'ArcGIS Platform' to read, write, publish, or manage vector and raster
data via ArcGIS location services REST API endpoints
<https://developers.arcgis.com/rest/>.
Author: Josiah Parry [aut, cre] ,
Eli Pousson [ctb] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb] ,
Antony Barja [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgislayers versions 0.4.0 dated 2025-04-15 and 0.5.0 dated 2025-09-19
arcgislayers-0.4.0/arcgislayers/R/arc-add-update-delete.R |only arcgislayers-0.4.0/arcgislayers/man/list_service_raster_fns.Rd |only arcgislayers-0.5.0/arcgislayers/DESCRIPTION | 40 arcgislayers-0.5.0/arcgislayers/MD5 | 81 - arcgislayers-0.5.0/arcgislayers/NAMESPACE | 5 arcgislayers-0.5.0/arcgislayers/NEWS.md | 34 arcgislayers-0.5.0/arcgislayers/R/add_item.R | 11 arcgislayers-0.5.0/arcgislayers/R/arc-add-delete.R |only arcgislayers-0.5.0/arcgislayers/R/arc-definition.R |only arcgislayers-0.5.0/arcgislayers/R/arc-open.R | 190 ++-- arcgislayers-0.5.0/arcgislayers/R/arc-raster.R | 2 arcgislayers-0.5.0/arcgislayers/R/arc-read.R | 24 arcgislayers-0.5.0/arcgislayers/R/arc-select.R | 180 +-- arcgislayers-0.5.0/arcgislayers/R/attachments.R | 7 arcgislayers-0.5.0/arcgislayers/R/print-methods.R | 8 arcgislayers-0.5.0/arcgislayers/R/raster-fns.R | 26 arcgislayers-0.5.0/arcgislayers/R/update-attachments.R |only arcgislayers-0.5.0/arcgislayers/R/update-features.R |only arcgislayers-0.5.0/arcgislayers/R/utils-feature-server.R | 8 arcgislayers-0.5.0/arcgislayers/R/utils-validation.R |only arcgislayers-0.5.0/arcgislayers/R/utils.R | 52 - arcgislayers-0.5.0/arcgislayers/man/arc_open.Rd | 30 arcgislayers-0.5.0/arcgislayers/man/arc_raster.Rd | 2 arcgislayers-0.5.0/arcgislayers/man/arc_read.Rd | 4 arcgislayers-0.5.0/arcgislayers/man/arc_select.Rd | 2 arcgislayers-0.5.0/arcgislayers/man/attachments.Rd | 5 arcgislayers-0.5.0/arcgislayers/man/definition.Rd |only arcgislayers-0.5.0/arcgislayers/man/encode_field_values.Rd | 7 arcgislayers-0.5.0/arcgislayers/man/figures/README-unnamed-chunk-7-1.png |only arcgislayers-0.5.0/arcgislayers/man/get_layer.Rd | 2 arcgislayers-0.5.0/arcgislayers/man/get_layer_estimates.Rd | 2 arcgislayers-0.5.0/arcgislayers/man/modify.Rd | 35 arcgislayers-0.5.0/arcgislayers/man/raster_fns.Rd |only arcgislayers-0.5.0/arcgislayers/man/truncate_layer.Rd | 2 arcgislayers-0.5.0/arcgislayers/man/update_attachments.Rd |only arcgislayers-0.5.0/arcgislayers/tests/testthat.R | 8 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-adding-features.R | 22 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-arc_open.R | 97 ++ arcgislayers-0.5.0/arcgislayers/tests/testthat/test-arc_read.R | 1 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-arc_select.R | 8 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-attachments.R | 4 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-definition.R |only arcgislayers-0.5.0/arcgislayers/tests/testthat/test-delete-feats.R |only arcgislayers-0.5.0/arcgislayers/tests/testthat/test-encode-field-values.R | 459 +++++++++- arcgislayers-0.5.0/arcgislayers/tests/testthat/test-page-size.R | 4 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-raster-fns.R | 5 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-return-geometry.R | 2 arcgislayers-0.5.0/arcgislayers/tests/testthat/test-returned-fields.R | 5 48 files changed, 972 insertions(+), 402 deletions(-)