Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Jose Carlos [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.39 dated 2025-07-18 and 3.40 dated 2025-09-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 17 ++++++++++++++++- R/Boyce.R | 8 +++++--- R/evaluate.R | 11 +++++++++-- R/varImp.R | 46 +++++++++++++++++++++++++++++----------------- man/modEvA-package.Rd | 4 ++-- 7 files changed, 71 insertions(+), 35 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.1-5 dated 2025-07-17 and 3.2-0 dated 2025-09-20
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS | 18 ++++++++++++++++++ R/locator.R | 17 +++++++++++++++-- R/utilseq.R | 2 +- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/macros/defns.Rd | 2 +- man/revcumsum.Rd | 5 +++-- man/spatstat.utils-internal.Rd | 2 ++ man/spatstatLocator.Rd | 16 +++++++++++++++- 12 files changed, 73 insertions(+), 22 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Convert Plot to 'grob' or 'ggplot' Object
Description: Convert plot function call (using expression or formula) to 'grob' or 'ggplot' object that compatible to the 'grid' and 'ggplot2' ecosystem. With this package, we are able to e.g. using 'cowplot' to align plots produced by 'base' graphics, 'ComplexHeatmap', 'eulerr', 'grid', 'lattice', 'magick', 'pheatmap', 'vcd' etc. by converting them to 'ggplot' objects.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggplotify versions 0.1.2 dated 2023-08-09 and 0.1.3 dated 2025-09-20
DESCRIPTION | 14 ++++++++------ MD5 | 18 ++++++++++-------- NAMESPACE | 4 +++- NEWS.md | 5 +++++ R/as-ggplot.R | 6 +++--- R/as-grob.R | 6 ++++++ R/ggplotify-package.R |only build/vignette.rds |binary inst/doc/ggplotify.html | 26 ++++++++++++++++---------- man/as-grob.Rd | 3 +++ man/ggplotify-package.Rd |only 11 files changed, 54 insertions(+), 28 deletions(-)
Title: High Dimensional Bayesian Mediation Analysis
Description: Perform mediation analysis in the presence of high-dimensional
mediators based on the potential outcome framework. Bayesian Mediation
Analysis (BAMA), developed by Song et al (2019) <doi:10.1111/biom.13189> and
Song et al (2020) <doi:10.48550/arXiv.2009.11409>,
relies on two Bayesian sparse linear mixed models to simultaneously analyze
a relatively large number of mediators for a continuous exposure and outcome
assuming a small number of mediators are truly active. This sparsity
assumption also allows the extension of univariate mediator analysis by
casting the identification of active mediators as a variable selection
problem and applying Bayesian methods with continuous shrinkage priors on
the effects.
Author: Alexander Rix [aut],
Mike Kleinsasser [aut, cre],
Yanyi Song [aut]
Maintainer: Mike Kleinsasser <mkleinsa@umich.edu>
Diff between bama versions 1.3.0 dated 2023-01-24 and 1.3.1 dated 2025-09-20
DESCRIPTION | 10 ++-- MD5 | 12 ++--- R/bama.R | 10 ++-- inst/doc/bama.html | 111 ++++++++++++++++++++++++++--------------------------- man/bama.Rd | 10 ++-- src/Makevars | 1 src/Makevars.win | 1 7 files changed, 76 insertions(+), 79 deletions(-)