Title: Total Variation Regularization
Description: Provides tools for denoising noisy signal and images via
Total Variation Regularization. Reducing the total variation of
the given signal is known to remove spurious detail while preserving
essential structural details. For the seminal work on the topic,
see Rudin et al (1992) <doi:10.1016/0167-2789(92)90242-F>.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between tvR versions 0.3.2 dated 2021-08-22 and 0.3.3 dated 2025-09-21
tvR-0.3.2/tvR/man/tvR-package.Rd |only tvR-0.3.3/tvR/DESCRIPTION | 14 +++++++------- tvR-0.3.3/tvR/MD5 | 19 +++++++++---------- tvR-0.3.3/tvR/R/tvR-package.R | 2 +- tvR-0.3.3/tvR/R/zzz.R | 2 +- tvR-0.3.3/tvR/build/partial.rdb |binary tvR-0.3.3/tvR/build/vignette.rds |binary tvR-0.3.3/tvR/inst/doc/denoising-with-tvR.R | 2 +- tvR-0.3.3/tvR/inst/doc/denoising-with-tvR.pdf |binary tvR-0.3.3/tvR/src/Makevars | 1 - tvR-0.3.3/tvR/src/Makevars.win | 1 - 11 files changed, 19 insertions(+), 22 deletions(-)
Title: Toolkit for Topological Data Analysis
Description: Topological data analysis studies structure and shape of the data using topological features. We provide a variety of algorithms to learn with persistent homology of the data based on functional summaries for clustering, hypothesis testing, visualization, and others. We refer to Wasserman (2018) <doi:10.1146/annurev-statistics-031017-100045> for a statistical perspective on the topic.
Author: Kisung You [aut, cre] ,
Byeongsu Yu [aut]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between TDAkit versions 0.1.2 dated 2021-08-23 and 0.1.3 dated 2025-09-21
DESCRIPTION | 14 +++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/RcppExports.R | 10 +++++----- R/package-TDAkit.R | 7 +++---- R/zzz.R | 2 +- build/partial.rdb |binary src/Makevars | 1 - src/Makevars.win | 1 - 9 files changed, 25 insertions(+), 28 deletions(-)
Title: A Framework for Investment Strategy Simulation
Description: Provides a framework for performing discrete (share-level) simulations of
investment strategies. Simulated portfolios optimize exposure to an input signal subject
to constraints such as position size and factor exposure. For background see L. Chincarini
and D. Kim (2010, ISBN:978-0-07-145939-6) "Quantitative Equity Portfolio Management".
Author: Jeff Enos [cre, aut, cph],
David Kane [aut],
Ben Czekanski [ctb],
Robert Hoover [ctb],
Jack Luby [ctb],
Nils Wallin [ctb]
Maintainer: Jeff Enos <jeffrey.enos@gmail.com>
Diff between strand versions 0.2.0 dated 2020-11-19 and 0.2.2 dated 2025-09-21
DESCRIPTION | 10 - MD5 | 30 ++--- R/data.R | 4 R/strand.R | 2 R/utilities.R | 4 README.md | 14 -- build/vignette.rds |binary inst/doc/strand.R | 4 inst/doc/strand.Rmd | 6 - inst/doc/strand.html | 257 +++++++++++++++++++++++++++++--------------------- man/PortOpt.Rd | 78 +++++++-------- man/Simulation.Rd | 192 ++++++++++++++++++------------------- man/sample_inputs.Rd | 2 man/sample_pricing.Rd | 2 man/strand-package.Rd | 8 + vignettes/strand.Rmd | 6 - 16 files changed, 335 insertions(+), 284 deletions(-)
Title: Scalable Bayes with Median of Subset Posteriors
Description: Median-of-means is a generic yet powerful framework for scalable and robust estimation. A framework for Bayesian analysis is called M-posterior, which estimates a median of subset posterior measures. For general exposition to the topic, see the paper by Minsker (2015) <doi:10.3150/14-BEJ645>.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between SBmedian versions 0.1.1 dated 2021-08-16 and 0.1.2 dated 2025-09-21
SBmedian-0.1.1/SBmedian/man/SBmedian.Rd |only SBmedian-0.1.2/SBmedian/DESCRIPTION | 14 +++++++------- SBmedian-0.1.2/SBmedian/MD5 | 19 +++++++++---------- SBmedian-0.1.2/SBmedian/NAMESPACE | 2 +- SBmedian-0.1.2/SBmedian/R/RcppExports.R | 2 +- SBmedian-0.1.2/SBmedian/R/mwass.euc.R | 2 +- SBmedian-0.1.2/SBmedian/R/package-SBmedian.R | 4 ++-- SBmedian-0.1.2/SBmedian/R/zzz.R | 2 +- SBmedian-0.1.2/SBmedian/build/partial.rdb |binary SBmedian-0.1.2/SBmedian/src/Makevars | 1 - SBmedian-0.1.2/SBmedian/src/Makevars.win | 1 - 11 files changed, 22 insertions(+), 25 deletions(-)
Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.1.5 dated 2025-07-13 and 0.2 dated 2025-09-21
ReliaGrowR-0.1.5/ReliaGrowR/R/duane_plot.R |only ReliaGrowR-0.1.5/ReliaGrowR/R/plot_rga.R |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.Rmd |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.docx |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.html |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.log |only ReliaGrowR-0.1.5/ReliaGrowR/inst/paper.tex |only ReliaGrowR-0.1.5/ReliaGrowR/man/duane_plot.Rd |only ReliaGrowR-0.1.5/ReliaGrowR/man/plot_rga.Rd |only ReliaGrowR-0.1.5/ReliaGrowR/tests/testthat/test-duane-plot.R |only ReliaGrowR-0.1.5/ReliaGrowR/tests/testthat/test-plot-rga.R |only ReliaGrowR-0.2/ReliaGrowR/DESCRIPTION | 11 ReliaGrowR-0.2/ReliaGrowR/MD5 | 76 +- ReliaGrowR-0.2/ReliaGrowR/NAMESPACE | 14 ReliaGrowR-0.2/ReliaGrowR/NEWS.md | 17 ReliaGrowR-0.2/ReliaGrowR/R/ReliaGrowR-package.R |only ReliaGrowR-0.2/ReliaGrowR/R/duane.R |only ReliaGrowR-0.2/ReliaGrowR/R/gof.R |only ReliaGrowR-0.2/ReliaGrowR/R/rdt.R |only ReliaGrowR-0.2/ReliaGrowR/R/rga.R | 279 ++++++---- ReliaGrowR-0.2/ReliaGrowR/R/weibull_to_rga.R | 78 +- ReliaGrowR-0.2/ReliaGrowR/README.md | 15 ReliaGrowR-0.2/ReliaGrowR/build/partial.rdb |only ReliaGrowR-0.2/ReliaGrowR/inst/WORDLIST | 13 ReliaGrowR-0.2/ReliaGrowR/inst/doc/RGA.R | 9 ReliaGrowR-0.2/ReliaGrowR/inst/doc/RGA.Rmd | 93 +-- ReliaGrowR-0.2/ReliaGrowR/inst/doc/RGA.html | 221 +++---- ReliaGrowR-0.2/ReliaGrowR/inst/paper |only ReliaGrowR-0.2/ReliaGrowR/inst/plumber |only ReliaGrowR-0.2/ReliaGrowR/man/ReliaGrowR-package.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/duane.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/plot.duane.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/plot.rga.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/ppplot.rga.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/print.duane.Rd | 17 ReliaGrowR-0.2/ReliaGrowR/man/print.rdt.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/print.rga.Rd | 19 ReliaGrowR-0.2/ReliaGrowR/man/qqplot.rga.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/rdt.Rd |only ReliaGrowR-0.2/ReliaGrowR/man/rga.Rd | 21 ReliaGrowR-0.2/ReliaGrowR/man/weibull_to_rga.Rd | 25 ReliaGrowR-0.2/ReliaGrowR/tests/testthat/Rplots.pdf |binary ReliaGrowR-0.2/ReliaGrowR/tests/testthat/_snaps |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-duane.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-gof.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rdt.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rga.R | 104 ++- ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-weibull_to_rga.R | 110 +-- ReliaGrowR-0.2/ReliaGrowR/vignettes/RGA.Rmd | 93 +-- 49 files changed, 709 insertions(+), 506 deletions(-)
Title: Matrix Completion, Imputation, and Inpainting Methods
Description: Filling in the missing entries of a partially observed data is one of fundamental problems in various disciplines of mathematical science. For many cases, data at our interests have canonical form of matrix in that the problem is posed upon a matrix with missing values to fill in the entries under preset assumptions and models. We provide a collection of methods from multiple disciplines under Matrix Completion, Imputation, and Inpainting. See Davenport and Romberg (2016) <doi:10.1109/JSTSP.2016.2539100> for an overview of the topic.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between filling versions 0.2.3 dated 2021-08-21 and 0.2.4 dated 2025-09-21
filling-0.2.3/filling/man/filling-package.Rd |only filling-0.2.4/filling/DESCRIPTION | 14 +++++++------- filling-0.2.4/filling/MD5 | 13 ++++++------- filling-0.2.4/filling/R/filling-package.R | 2 +- filling-0.2.4/filling/R/zzz.R | 2 +- filling-0.2.4/filling/build/partial.rdb |binary filling-0.2.4/filling/src/Makevars | 1 - filling-0.2.4/filling/src/Makevars.win | 1 - 8 files changed, 15 insertions(+), 18 deletions(-)
Title: Statistical Tools for Covariance Analysis
Description: Covariance is of universal prevalence across various disciplines within statistics.
We provide a rich collection of geometric and inferential tools for convenient analysis of
covariance structures, topics including distance measures, mean covariance estimator,
covariance hypothesis test for one-sample and two-sample cases, and covariance estimation.
For an introduction to covariance in multivariate statistical analysis,
see Schervish (1987) <doi:10.1214/ss/1177013111>.
Author: Kyoungjae Lee [aut],
Lizhen Lin [ctb],
Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between CovTools versions 0.5.4 dated 2021-08-13 and 0.5.6 dated 2025-09-21
CovTools-0.5.4/CovTools/man/package-CovTools.Rd |only CovTools-0.5.6/CovTools/DESCRIPTION | 14 +++++------ CovTools-0.5.6/CovTools/MD5 | 25 ++++++++++----------- CovTools-0.5.6/CovTools/NAMESPACE | 2 - CovTools-0.5.6/CovTools/R/RcppExports.R | 12 +++++----- CovTools-0.5.6/CovTools/R/init.R | 2 - CovTools-0.5.6/CovTools/R/package-CovTools.R | 5 ++-- CovTools-0.5.6/CovTools/README.md | 4 --- CovTools-0.5.6/CovTools/build/partial.rdb |binary CovTools-0.5.6/CovTools/man/CovMean.Rd | 4 +-- CovTools-0.5.6/CovTools/man/PreEst.2014Banerjee.Rd | 4 ++- CovTools-0.5.6/CovTools/man/PreEst.2017Lee.Rd | 10 +++++--- CovTools-0.5.6/CovTools/src/Makevars | 1 CovTools-0.5.6/CovTools/src/Makevars.win | 1 14 files changed, 43 insertions(+), 41 deletions(-)
Title: Algorithms using Alternating Direction Method of Multipliers
Description: Provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM).
See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
Author: Kisung You [aut, cre] ,
Xiaozhi Zhu [aut]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between ADMM versions 0.3.3 dated 2021-08-08 and 0.3.4 dated 2025-09-21
ADMM-0.3.3/ADMM/man/ADMM.Rd |only ADMM-0.3.4/ADMM/DESCRIPTION | 14 +++++++------- ADMM-0.3.4/ADMM/MD5 | 15 +++++++-------- ADMM-0.3.4/ADMM/R/admm-package.R | 8 +------- ADMM-0.3.4/ADMM/R/zzz.R | 2 +- ADMM-0.3.4/ADMM/README.md | 33 +++++++++++++++++++-------------- ADMM-0.3.4/ADMM/build/partial.rdb |binary ADMM-0.3.4/ADMM/src/Makevars | 1 - ADMM-0.3.4/ADMM/src/Makevars.win | 1 - 9 files changed, 35 insertions(+), 39 deletions(-)
Title: Extension Types for Spatial Data for Use with 'Arrow'
Description: Provides extension types and conversions to between R-native
object types and 'Arrow' columnar types. This includes integration among
the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial
metadata is preserved wherever possible. Extension type implementations
ensure first-class geometry data type support in the 'arrow' and 'nanoarrow'
packages.
Author: Dewey Dunnington [aut, cre] ,
Anthony North [ctb],
Apache Software Foundation [cph],
Ulf Adams [cph],
Daniel Lemire [cph],
Joao Paulo Magalhaes [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between geoarrow versions 0.3.0 dated 2025-05-26 and 0.4.0 dated 2025-09-21
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/array.R | 14 ++++---------- R/pkg-sf.R | 24 ++++++++++++++++++++++++ README.md | 17 +++++++++++------ src/nanoarrow/nanoarrow.h | 4 ++-- tests/testthat/test-array.R | 17 +++++++++++------ tests/testthat/test-pkg-sf.R | 28 ++++++++++++++++++++++++++++ 10 files changed, 101 insertions(+), 36 deletions(-)
Title: Network Analysis and Visualization
Description: Collection of functions for fast manipulation, handling, and analysis of large-scale
networks based on family and social data. Functions are utility functions used to manipulate data
in three "formats": sparse adjacency matrices, pedigree trio family data, and pedigree family data.
When possible, the functions should be able to handle millions of data points quickly for use in combination
with data from large public national registers and databases.
Kenneth Lange (2003, ISBN:978-8181281135).
Author: Claus Thorn Ekstroem [aut, cre],
Bendix Carstensen [ctb]
Maintainer: Claus Thorn Ekstroem <ekstrom@sund.ku.dk>
Diff between networkR versions 0.1.2 dated 2019-09-20 and 0.1.4 dated 2025-09-21
networkR-0.1.2/networkR/R/networkR.R |only networkR-0.1.2/networkR/man/networkR.Rd |only networkR-0.1.4/networkR/DESCRIPTION | 17 +++---- networkR-0.1.4/networkR/MD5 | 22 +++++----- networkR-0.1.4/networkR/NAMESPACE | 8 +-- networkR-0.1.4/networkR/NEWS.md |only networkR-0.1.4/networkR/R/RcppExports.R | 35 ++++++++++++++-- networkR-0.1.4/networkR/R/networkR-package.R |only networkR-0.1.4/networkR/man/make_family_id.Rd | 4 - networkR-0.1.4/networkR/man/make_parental_chain.Rd |only networkR-0.1.4/networkR/man/networkR-package.Rd |only networkR-0.1.4/networkR/src/Makevars |only networkR-0.1.4/networkR/src/RcppExports.cpp | 19 ++++++++ networkR-0.1.4/networkR/src/cluster_fam.cpp | 33 ++++++++++++--- networkR-0.1.4/networkR/src/cluster_parental_chains.cpp |only networkR-0.1.4/networkR/tests/testthat/testtrios.R | 20 +++++++++ 16 files changed, 124 insertions(+), 34 deletions(-)
Title: Parallel and Memory-Efficient Ecological Diversity Metrics
Description: Computes alpha and beta diversity metrics using concurrent 'C' threads.
Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis
dissimilarity, Shannon diversity index, and many others.
Also parses newick trees into 'phylo' objects and rarefies feature tables.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between ecodive versions 1.0.0 dated 2025-08-22 and 2.0.0 dated 2025-09-21
ecodive-1.0.0/ecodive/build/partial.rdb |only ecodive-1.0.0/ecodive/man/bray_curtis.Rd |only ecodive-1.0.0/ecodive/man/canberra.Rd |only ecodive-1.0.0/ecodive/man/chao1.Rd |only ecodive-1.0.0/ecodive/man/euclidean.Rd |only ecodive-1.0.0/ecodive/man/faith.Rd |only ecodive-1.0.0/ecodive/man/generalized_unifrac.Rd |only ecodive-1.0.0/ecodive/man/gower.Rd |only ecodive-1.0.0/ecodive/man/inv_simpson.Rd |only ecodive-1.0.0/ecodive/man/jaccard.Rd |only ecodive-1.0.0/ecodive/man/kulczynski.Rd |only ecodive-1.0.0/ecodive/man/manhattan.Rd |only ecodive-1.0.0/ecodive/man/shannon.Rd |only ecodive-1.0.0/ecodive/man/simpson.Rd |only ecodive-1.0.0/ecodive/man/unweighted_unifrac.Rd |only ecodive-1.0.0/ecodive/man/variance_adjusted_unifrac.Rd |only ecodive-1.0.0/ecodive/man/weighted_normalized_unifrac.Rd |only ecodive-1.0.0/ecodive/man/weighted_unifrac.Rd |only ecodive-1.0.0/ecodive/src/gower.c |only ecodive-2.0.0/ecodive/DESCRIPTION | 12 ecodive-2.0.0/ecodive/MD5 | 124 ecodive-2.0.0/ecodive/NAMESPACE | 62 ecodive-2.0.0/ecodive/NEWS.md | 15 ecodive-2.0.0/ecodive/R/alpha_div.r | 517 - ecodive-2.0.0/ecodive/R/beta_div.r | 1156 +- ecodive-2.0.0/ecodive/R/documentation.r | 215 ecodive-2.0.0/ecodive/R/metrics.r |only ecodive-2.0.0/ecodive/R/rarefy.r | 35 ecodive-2.0.0/ecodive/R/utils.r | 41 ecodive-2.0.0/ecodive/R/validate.r | 369 ecodive-2.0.0/ecodive/README.md | 58 ecodive-2.0.0/ecodive/build/vignette.rds |binary ecodive-2.0.0/ecodive/data/ex_counts.rda |binary ecodive-2.0.0/ecodive/inst/doc/adiv.Rmd | 12 ecodive-2.0.0/ecodive/inst/doc/adiv.html | 33 ecodive-2.0.0/ecodive/inst/doc/bdiv.Rmd | 57 ecodive-2.0.0/ecodive/inst/doc/bdiv.html | 134 ecodive-2.0.0/ecodive/inst/doc/bdiv_guide.Rmd |only ecodive-2.0.0/ecodive/inst/doc/bdiv_guide.html |only ecodive-2.0.0/ecodive/inst/doc/benchmark.R | 9 ecodive-2.0.0/ecodive/inst/doc/benchmark.Rmd | 733 - ecodive-2.0.0/ecodive/inst/doc/benchmark.html | 1092 +- ecodive-2.0.0/ecodive/inst/doc/ecodive.Rmd | 92 ecodive-2.0.0/ecodive/inst/doc/ecodive.html | 220 ecodive-2.0.0/ecodive/inst/doc/unifrac.Rmd | 2 ecodive-2.0.0/ecodive/inst/doc/unifrac.html | 2 ecodive-2.0.0/ecodive/man/adiv_functions.Rd |only ecodive-2.0.0/ecodive/man/alpha_div.Rd |only ecodive-2.0.0/ecodive/man/bdiv_functions.Rd |only ecodive-2.0.0/ecodive/man/beta_div.Rd |only ecodive-2.0.0/ecodive/man/documentation.Rd | 44 ecodive-2.0.0/ecodive/man/figures/JOSS_Fig1A.svg |only ecodive-2.0.0/ecodive/man/figures/bdiv-benchmark.svg | 6587 +++------------ ecodive-2.0.0/ecodive/man/figures/bray-benchmark.svg |only ecodive-2.0.0/ecodive/man/figures/faith-benchmark.svg |only ecodive-2.0.0/ecodive/man/figures/shannon-benchmark.svg |only ecodive-2.0.0/ecodive/man/figures/simpson-benchmark.svg |only ecodive-2.0.0/ecodive/man/figures/unifrac-benchmark.svg | 1103 +- ecodive-2.0.0/ecodive/man/metrics.Rd |only ecodive-2.0.0/ecodive/man/n_cpus.Rd | 10 ecodive-2.0.0/ecodive/man/rarefy.Rd | 8 ecodive-2.0.0/ecodive/src/Makevars.win |only ecodive-2.0.0/ecodive/src/alpha_div.c | 410 ecodive-2.0.0/ecodive/src/beta_div.c | 683 + ecodive-2.0.0/ecodive/src/faith.c | 37 ecodive-2.0.0/ecodive/src/init.c | 25 ecodive-2.0.0/ecodive/src/rarefy.c | 66 ecodive-2.0.0/ecodive/src/transform.c |only ecodive-2.0.0/ecodive/src/unifrac.c | 216 ecodive-2.0.0/ecodive/tests/testthat/helper.r | 21 ecodive-2.0.0/ecodive/tests/testthat/test-alpha_div.r | 132 ecodive-2.0.0/ecodive/tests/testthat/test-beta_div.r | 374 ecodive-2.0.0/ecodive/tests/testthat/test-methods.r |only ecodive-2.0.0/ecodive/tests/testthat/test-rarefy.r | 6 ecodive-2.0.0/ecodive/tests/testthat/test-validate.r | 78 ecodive-2.0.0/ecodive/vignettes/adiv.Rmd | 12 ecodive-2.0.0/ecodive/vignettes/bdiv.Rmd | 57 ecodive-2.0.0/ecodive/vignettes/bdiv_guide.Rmd |only ecodive-2.0.0/ecodive/vignettes/benchmark.Rmd | 733 - ecodive-2.0.0/ecodive/vignettes/ecodive.Rmd | 92 ecodive-2.0.0/ecodive/vignettes/unifrac.Rmd | 2 81 files changed, 7030 insertions(+), 8656 deletions(-)
Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing,
standard-evaluated alternatives to with() and aes(),
and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching it,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Diff between tinycodet versions 0.5.6 dated 2025-04-05 and 0.5.8 dated 2025-09-21
tinycodet-0.5.6/tinycodet/R/atomic_typecast.R |only tinycodet-0.5.6/tinycodet/R/inplace.R |only tinycodet-0.5.6/tinycodet/R/subset_if.R |only tinycodet-0.5.6/tinycodet/R/x.import.R |only tinycodet-0.5.6/tinycodet/inst/tinytest/test-matrix_ops.R |only tinycodet-0.5.6/tinycodet/man/atomic_typecast.Rd |only tinycodet-0.5.6/tinycodet/man/inplace.Rd |only tinycodet-0.5.6/tinycodet/man/subset_if.Rd |only tinycodet-0.5.6/tinycodet/man/x.import.Rd |only tinycodet-0.5.8/tinycodet/DESCRIPTION | 9 - tinycodet-0.5.8/tinycodet/MD5 | 50 +++--- tinycodet-0.5.8/tinycodet/NAMESPACE | 4 tinycodet-0.5.8/tinycodet/NEWS.md | 10 + tinycodet-0.5.8/tinycodet/R/aaa4_tinycodet_dry.R | 12 - tinycodet-0.5.8/tinycodet/R/aaa5_tinycodet_misc.R | 1 tinycodet-0.5.8/tinycodet/R/decimal_truth.R | 8 + tinycodet-0.5.8/tinycodet/R/import_as.R | 17 -- tinycodet-0.5.8/tinycodet/R/import_helper.R |only tinycodet-0.5.8/tinycodet/R/logic_ops.R | 23 ++- tinycodet-0.5.8/tinycodet/R/matrix_ops.R | 76 ++++------ tinycodet-0.5.8/tinycodet/R/xxx_atomic_typecast.R |only tinycodet-0.5.8/tinycodet/build/partial.rdb |binary tinycodet-0.5.8/tinycodet/inst/tinytest/dry/test-atomic_conversions.R | 10 + tinycodet-0.5.8/tinycodet/inst/tinytest/dry/test-dry.R | 46 ------ tinycodet-0.5.8/tinycodet/inst/tinytest/dry/test-matrix_ops.R |only tinycodet-0.5.8/tinycodet/inst/tinytest/test-logic_ops.R | 4 tinycodet-0.5.8/tinycodet/man/aaa4_tinycodet_dry.Rd | 10 - tinycodet-0.5.8/tinycodet/man/aaa5_tinycodet_misc.Rd | 1 tinycodet-0.5.8/tinycodet/man/decimal_truth.Rd | 6 tinycodet-0.5.8/tinycodet/man/import_as.Rd | 17 +- tinycodet-0.5.8/tinycodet/man/import_helper.Rd |only tinycodet-0.5.8/tinycodet/man/matrix_ops.Rd | 39 ----- tinycodet-0.5.8/tinycodet/man/xxx_atomic_typecast.Rd |only 33 files changed, 149 insertions(+), 194 deletions(-)
Title: Capture-Recapture Estimation using Bayesian Model Averaging
Description: Performs Bayesian model averaging for capture-recapture. This includes code to stratify records, check the strata for suitable overlap to be used for capture-recapture, and some functions to plot the estimated population size.
Author: James Johndrow [aut],
Kristian Lum [aut],
Patrick Ball [aut],
Olivier Binette [ctb, cre]
Maintainer: Olivier Binette <olivier.binette@gmail.com>
Diff between dga versions 2.0.1 dated 2021-05-10 and 2.0.2 dated 2025-09-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/Makevars | 2 +- src/Makevars.win | 2 +- src/RcppExports.cpp | 5 +++++ 6 files changed, 21 insertions(+), 12 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] ,
Terrence D. Jorgensen [aut] ,
Luc De Wilde [aut],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsika [...truncated...]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.6-19 dated 2024-09-26 and 0.6-20 dated 2025-09-21
DESCRIPTION | 14 MD5 | 229 +++---- NAMESPACE | 6 R/00class.R | 1 R/ctr_estfun.R | 91 ++ R/lav_bootstrap.R | 93 ++ R/lav_bootstrap_lrt.R | 64 +- R/lav_cor.R | 9 R/lav_data.R | 48 + R/lav_data_update.R | 4 R/lav_fit_cfi.R | 32 - R/lav_fit_measures.R | 18 R/lav_fit_rmsea.R | 12 R/lav_fit_srmr.R | 35 - R/lav_fit_utils.R | 53 + R/lav_h1_implied.R | 33 - R/lav_h1_logl.R | 7 R/lav_lavaanList_inspect.R | 9 R/lav_lavaanList_methods.R | 135 +++- R/lav_lavaanList_simulate.R | 62 - R/lav_lavaan_step00_init.R | 10 R/lav_lavaan_step01_ovnames.R | 129 +++- R/lav_lavaan_step02_options.R | 16 R/lav_lavaan_step04_partable.R | 1 R/lav_lavaan_step09_model.R | 112 +-- R/lav_lavaan_step10_cache.R | 8 R/lav_lavaan_step11_optim.R | 18 R/lav_lavaan_step16_rotation.R | 7 R/lav_matrix.R | 122 +++ R/lav_matrix_rotate.R | 6 R/lav_model.R | 17 R/lav_model_compute.R | 17 R/lav_model_efa.R | 4 R/lav_model_estimate.R | 6 R/lav_model_gradient.R | 54 - R/lav_model_h1_information.R | 15 R/lav_model_hessian.R | 3 R/lav_model_information.R | 26 R/lav_model_loglik.R | 16 R/lav_model_objective.R | 21 R/lav_model_utils.R | 32 + R/lav_model_vcov.R | 66 +- R/lav_modification.R | 4 R/lav_mvnorm.R | 37 - R/lav_mvnorm_cluster.R | 43 + R/lav_mvnorm_h1.R | 29 R/lav_mvnorm_missing.R | 25 R/lav_mvnorm_missing_h1.R | 63 + R/lav_mvreg.R | 12 R/lav_object_generate.R | 46 - R/lav_object_inspect.R | 11 R/lav_object_methods.R | 103 ++- R/lav_object_summary.R | 13 R/lav_options.R | 56 + R/lav_options_default.R | 46 + R/lav_partable.R | 75 ++ R/lav_partable_bounds.R | 14 R/lav_partable_check.R | 6 R/lav_partable_constraints.R | 2 R/lav_partable_flat.R | 165 ++++- R/lav_partable_from_lm.R | 9 R/lav_partable_labels.R | 15 R/lav_partable_random.R | 50 - R/lav_partable_subset.R | 181 ++++- R/lav_partable_unrestricted.R | 22 R/lav_partable_utils.R | 11 R/lav_partable_vnames.R | 160 ++++- R/lav_predict.R | 190 +++++- R/lav_predict_y.R | 20 R/lav_print.R | 10 R/lav_representation.R | 4 R/lav_representation_lisrel.R | 529 +++++++++++++++- R/lav_residuals.R | 31 R/lav_sam_step0.R | 30 R/lav_sam_step1.R | 607 +++---------------- R/lav_sam_step1_local.R |only R/lav_sam_step2.R | 53 + R/lav_sam_step2_se.R | 132 +++- R/lav_sam_utils.R | 393 ++++++++++++ R/lav_samplestats.R | 57 + R/lav_samplestats_gamma.R | 28 R/lav_samplestats_igamma.R | 18 R/lav_samplestats_step1.R | 8 R/lav_simulate_old.R | 127 ++-- R/lav_start.R | 131 +++- R/lav_syntax.R | 67 +- R/lav_syntax_parser.R | 54 + R/lav_syntax_parser_cr.R |only R/lav_syntax_parser_r.R |only R/lav_test.R | 6 R/lav_test_LRT.R | 125 ++- R/lav_test_diff.R | 14 R/lav_utils.R | 164 +++++ R/ldw_trace.R | 15 R/xxx_efa.R | 34 - R/xxx_fsr.R | 12 R/xxx_lavaan.R | 23 R/xxx_lavaanList.R | 136 +++- R/xxx_sam.R | 372 +++++++++-- R/zzz_OLDNAMES.R | 1 README.md | 18 build/partial.rdb |binary inst/CITATION | 58 + inst/understanding_lavaan_internals.R | 1072 ++++++++++++++++------------------ man/bootstrap.Rd | 6 man/efa.Rd | 29 man/fitMeasures.Rd | 65 +- man/lavMatrixRepresentation.Rd | 4 man/lavOptions.Rd | 23 man/lavPredict.Rd | 6 man/lavPredictY.Rd | 2 man/lavaan-class.Rd | 30 man/lavaanList-class.Rd | 17 man/model.syntax.Rd | 11 man/parameterEstimates.Rd | 7 man/sam.Rd | 8 man/simulateData.Rd | 17 117 files changed, 5417 insertions(+), 2206 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-17 0.2.1
2025-09-17 0.2.2
2025-09-16 0.2.0
2025-08-19 0.1.1
2025-07-23 0.1.0
Title: Bayesian Adaptive Trial Simulator Software (BATSS) for
Generalised Linear Models
Description: Defines operating characteristics of Bayesian Adaptive Trials considering a generalised linear model response via Monte Carlo simulations of Bayesian GLM fitted via integrated Laplace approximations (INLA).
Author: Dominique-Laurent Couturier [aut, cre] ,
Liz Ryan [aut] ,
Rainer Puhr [aut],
Thomas Jaki [aut] ,
Stephane Heritier [aut]
Maintainer: Dominique-Laurent Couturier <dominique.couturier@mrc-bsu.cam.ac.uk>
Diff between BATSS versions 1.0.1 dated 2025-08-27 and 1.1.0 dated 2025-09-21
DESCRIPTION | 10 - MD5 | 14 - NAMESPACE | 1 R/glm_internal.R | 2 R/plot.batss.R | 326 ++++++++++++++++++++++++++++++++----- R/summary.batss.R | 442 ++++++++++++++++++++++++--------------------------- man/plot.batss.Rd | 22 +- man/summary.batss.Rd | 6 8 files changed, 529 insertions(+), 294 deletions(-)
More information about rcppmlpackexamples at CRAN
Permanent link
More information about modelSelection at CRAN
Permanent link
More information about glioblastomaEHRsData at CRAN
Permanent link
Title: Fast Library for Number Theory
Description: An R interface to 'FLINT' <https://flintlib.org/>, a C library for
number theory. 'FLINT' extends GNU 'MPFR' <https://www.mpfr.org/>
and GNU 'MP' <https://gmplib.org/> with support for operations on
standard rings (the integers, the integers modulo n, finite fields,
the rational, p-adic, real, and complex numbers) as well as matrices
and polynomials over rings. 'FLINT' implements midpoint-radius
interval arithmetic, also known as ball arithmetic, in the real and
complex numbers, enabling computation in arbitrary precision with
rigorous propagation of rounding errors; see Johansson (2017)
<doi:10.1109/TC.2017.2690633>. Finally, 'FLINT' provides ball
arithmetic implementations of many special mathematical functions,
with high coverage of reference works such as the NIST Digital
Library of Mathematical Functions <https://dlmf.nist.gov/>. The R
interface defines S4 classes, generic functions, and methods for
representation and basic operations as well as p [...truncated...]
Author: Mikael Jagan [aut, cre] ,
Martin Maechler [ctb]
Maintainer: Mikael Jagan <jaganmn@mcmaster.ca>
Diff between flint versions 0.0.5 dated 2025-05-27 and 0.1.0 dated 2025-09-21
DESCRIPTION | 16 MD5 | 150 +- NAMESPACE | 76 + R/00_Class.R | 332 ++++++ R/00_Utils.R |only R/S3.R | 20 R/acb.R | 354 ++++++ R/acb_special.R | 28 R/acf.R | 335 +++++- R/arb.R | 345 ++++++ R/arb_special.R | 28 R/arf.R | 302 +++++ R/asVector.R |only R/conditions.R | 49 R/flint.R | 2111 +++++++++++++++++++++++++---------------- R/fmpq.R | 355 ++++++ R/fmpz.R | 316 +++++- R/mag.R | 303 +++++ R/slong.R | 313 +++++- R/ulong.R | 313 +++++- R/utils.R | 24 build/partial.rdb |binary configure | 105 +- configure.ac | 12 inst/NEWS.Rd | 155 ++- man/OptionalCharacter-class.Rd |only man/Part.Rd | 24 man/acb-class.Rd | 267 ++++- man/acf-class.Rd | 268 ++++- man/arb-class.Rd | 262 ++++- man/arb_dirichlet_zeta.Rd | 6 man/arb_hypgeom_2f1.Rd | 2 man/arb_hypgeom_bessel_j.Rd |only man/arf-class.Rd | 228 +++- man/asVector.Rd |only man/c.flint.Rd | 45 man/flint-class.Rd | 383 +++++-- man/flint-package.Rd | 37 man/fmpq-class.Rd | 271 ++++- man/fmpz-class.Rd | 244 ++++ man/format-methods.Rd | 48 man/mag-class.Rd | 220 +++- man/ulong-class.Rd | 346 +++++- src/acb.c | 1276 ++++++++++++++++++------ src/acb_special.c | 20 src/acf.c | 1234 ++++++++++++++++++----- src/arb.c | 1269 +++++++++++++++++------- src/arb_special.c | 20 src/arf.c | 1157 +++++++++++++++++----- src/config.h.in | 9 src/flint.c | 1494 ++++++++++++++++++++++++----- src/flint.h | 32 src/fmpq.c | 993 +++++++++++++------ src/fmpz.c | 914 +++++++++++++---- src/init.c | 124 +- src/mag.c | 616 ++++++----- src/slong.c | 786 ++++++++------- src/ulong.c | 736 +++++++------- src/utils.c | 538 ++++++++++ tests/all.equal.R | 16 tests/ambiguity.R | 8 tests/attrib.R | 36 tests/bind.R | 25 tests/coerce.R | 6 tests/data.frame.R | 4 tests/data.frame.Rout.save | 214 ++-- tests/format.R | 18 tests/hypgeom.R | 2 tests/initialize.R | 110 -- tests/is.finite.R | 20 tests/match.R | 17 tests/print.R | 4 tests/print.Rout.save | 273 ++--- tests/reg-tests.R |only tests/rep.R | 30 tests/seq.R | 13 tests/sort.R | 14 tests/subscript.R | 30 tests/summary.R | 2 79 files changed, 15629 insertions(+), 5124 deletions(-)
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-1 dated 2025-05-20 and 3.4-2 dated 2025-09-21
DESCRIPTION | 10 ++-- MD5 | 28 ++++++------- NAMESPACE | 4 + NEWS | 17 ++++++++ R/random.R | 83 +++++++++++++++++++++++++++++++--------- R/randommk.R | 58 +++++++++++++++++---------- R/rmhmodel.R | 4 + inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 25 +++++++----- man/rmpoint.Rd | 14 ++++++ man/rpoint.Rd | 16 ++++++- man/runifdisc.Rd | 21 +++++++++- man/runifpoint.Rd | 11 +++++ man/spatstat.random-internal.Rd | 7 ++- 15 files changed, 227 insertions(+), 73 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Power Analysis for Moderation and Mediation
Description: Power analysis and sample size determination
for moderation, mediation, and moderated mediation in models
fitted by structural equation modelling using the 'lavaan'
package by Rosseel (2012) <doi:10.18637/jss.v048.i02> or
by multiple regression. The package 'manymome' by
Cheung and Cheung (2024) <doi:10.3758/s13428-023-02224-z>
is used to specify the indirect paths or conditional
indirect paths to be tested.
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut] ,
Wendie Yang [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between power4mome versions 0.1.0 dated 2025-09-04 and 0.1.1 dated 2025-09-21
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS.md | 6 ++++++ R/fit_model.R | 9 +++++++++ R/fit_model_helpers.R |only R/ptable_pop_helpers.R | 2 +- README.md | 24 +++++++++++++++++++----- tests/testthat/test_add_cov.R | 27 +++++++++++++++++++++++---- tests/testthat/test_add_cov_indicators.R | 8 ++++++-- 9 files changed, 76 insertions(+), 23 deletions(-)
Title: Tukey Curve Depth and Distance in the Space of Curves
Description: Data recorded as paths or trajectories may be suitably described
by curves, which are independent of their parametrization. For the space of
such curves, the package provides functionalities for reading curves, sampling
points on curves, calculating distance between curves and for computing Tukey
curve depth of a curve w.r.t. to a bundle of curves. For details see
Lafaye De Micheaux, Mozharovskyi, and Vimond (2021) <doi:10.48550/arXiv.1901.00180>.
Author: Pavlo Mozharovskyi [aut, cre],
Pierre Lafaye De Micheaux [aut],
Myriam Vimond [aut]
Maintainer: Pavlo Mozharovskyi <pavlo.mozharovskyi@telecom-paristech.fr>
Diff between curveDepth versions 0.1.0.9 dated 2019-02-19 and 0.1.0.16 dated 2025-09-21
DESCRIPTION | 15 ++++++-------- MD5 | 14 ++++++------- R/RcppExports.R | 20 +++++++++++++++---- man/depth.curve.Tukey.Rd | 15 +++++++++++--- man/depthc.Tukey.Rd | 25 +++++++++++++++++++++--- man/sample.curves.Rd | 6 ++++- src/RcppExports.cpp | 24 +++++++++++++++-------- src/depthsCurveHfsp.cpp | 48 +++++++++++++++++++++++++++++++++++------------ 8 files changed, 121 insertions(+), 46 deletions(-)
Title: Collection of Data Structures
Description: A collection of functions to generate a large variety of
structures in high dimensions. These data structures are useful for
testing, validating, and improving algorithms used in dimensionality
reduction, clustering, machine learning, and visualization.
Author: Jayani P. Gamage [aut, cre] ,
Dianne Cook [aut] ,
Paul Harrison [aut] ,
Michael Lydeamore [aut] ,
Thiyanga S. Talagala [aut]
Maintainer: Jayani P. Gamage <jayanilakshika76@gmail.com>
Diff between cardinalR versions 0.1.10 dated 2025-08-21 and 0.2.6 dated 2025-09-21
cardinalR-0.1.10/cardinalR/man/gen_pyrholes.Rd |only cardinalR-0.2.6/cardinalR/DESCRIPTION | 10 cardinalR-0.2.6/cardinalR/MD5 | 108 +- cardinalR-0.2.6/cardinalR/NAMESPACE | 2 cardinalR-0.2.6/cardinalR/NEWS.md | 2 cardinalR-0.2.6/cardinalR/R/branching.R | 399 +++++++--- cardinalR-0.2.6/cardinalR/R/cube.R | 34 cardinalR-0.2.6/cardinalR/R/mobius.R | 27 cardinalR-0.2.6/cardinalR/R/multi_clusts.R | 149 +-- cardinalR-0.2.6/cardinalR/R/polynomial.R | 60 + cardinalR-0.2.6/cardinalR/R/pyramid.R | 4 cardinalR-0.2.6/cardinalR/R/scurve.R | 56 + cardinalR-0.2.6/cardinalR/R/sphere.R | 57 + cardinalR-0.2.6/cardinalR/R/swiss_roll.R | 30 cardinalR-0.2.6/cardinalR/R/trefoil.R | 59 + cardinalR-0.2.6/cardinalR/R/trigonometric.R | 169 +++- cardinalR-0.2.6/cardinalR/inst/doc/main_function.html | 9 cardinalR-0.2.6/cardinalR/inst/doc/quollr1sample.R | 4 cardinalR-0.2.6/cardinalR/inst/doc/quollr1sample.Rmd | 4 cardinalR-0.2.6/cardinalR/inst/doc/quollr1sample.html | 45 - cardinalR-0.2.6/cardinalR/man/gen_conicspiral.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_crescent.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_cubehole.Rd | 4 cardinalR-0.2.6/cardinalR/man/gen_cubic.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_curvybranches.Rd | 12 cardinalR-0.2.6/cardinalR/man/gen_curvycylinder.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_expbranches.Rd | 11 cardinalR-0.2.6/cardinalR/man/gen_helicalspiral.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_hemisphere.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_linearbranches.Rd | 13 cardinalR-0.2.6/cardinalR/man/gen_mobius.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_multicluster.Rd | 5 cardinalR-0.2.6/cardinalR/man/gen_nonlinear.Rd | 13 cardinalR-0.2.6/cardinalR/man/gen_orgcurvybranches.Rd | 21 cardinalR-0.2.6/cardinalR/man/gen_orglinearbranches.Rd | 23 cardinalR-0.2.6/cardinalR/man/gen_pyrfrac.Rd |only cardinalR-0.2.6/cardinalR/man/gen_quadratic.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_scurve.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_scurvehole.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_sphericalspiral.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_swissroll.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_trefoil3d.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_trefoil4d.Rd | 6 cardinalR-0.2.6/cardinalR/man/gen_unifcube.Rd | 2 cardinalR-0.2.6/cardinalR/man/gen_unifsphere.Rd | 6 cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/branching.md | 76 - cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/branching.new.md | 76 - cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/cube.md | 152 +-- cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/mobius.md | 5 cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/multicluster.md | 24 cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/polynomial.md | 40 - cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/pyramid.md | 4 cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/scurve.md | 3 cardinalR-0.2.6/cardinalR/tests/testthat/_snaps/trefoil.md | 24 cardinalR-0.2.6/cardinalR/tests/testthat/test-pyramid.R | 10 cardinalR-0.2.6/cardinalR/vignettes/quollr1sample.Rmd | 4 56 files changed, 1240 insertions(+), 600 deletions(-)
Title: Monte Carlo Standard Errors for MCMC
Description: Provides tools for computing Monte Carlo standard errors (MCSE) in
Markov chain Monte Carlo (MCMC) settings (survey in <doi:10.1201/b10905>,
Chapter 7). MCSE computation for expectation and quantile estimators is
supported as well as multivariate estimations. The package also provides
functions for computing effective sample size and for plotting Monte Carlo
estimates versus sample size.
Author: James M. Flegal [aut],
John Hughes [aut],
Dootika Vats [aut, cre],
Ning Dai [aut],
Kushagra Gupta [aut],
Uttiya Maji [aut]
Maintainer: Dootika Vats <dootika@iitk.ac.in>
Diff between mcmcse versions 1.5-0 dated 2021-09-09 and 1.5-1 dated 2025-09-21
DESCRIPTION | 53 ++++++++++++++++++++++++++++++------------- MD5 | 44 +++++++++++++++++------------------ R/ignore.R | 2 - R/mcmcse.R | 16 ++++++------ R/mcse_multi.R | 21 +++++++++-------- R/minESS.R | 4 +-- R/multiESS.R | 4 +-- README.md | 4 +++ build/vignette.rds |binary inst/CITATION | 18 ++++++++------ inst/doc/mcmcse_vignette.pdf |binary man/ess.Rd | 6 ++-- man/estvssamp.Rd | 4 +-- man/mcmcse-package.Rd | 14 +++++------ man/mcse.Rd | 4 +-- man/mcse.mat.Rd | 4 +-- man/mcse.multi.Rd | 6 ++-- man/mcse.q.Rd | 4 +-- man/mcse.q.mat.Rd | 4 +-- man/minESS.Rd | 4 +-- man/multiESS.Rd | 4 +-- src/Makevars | 1 src/Makevars.win | 1 23 files changed, 125 insertions(+), 97 deletions(-)
Title: Fit Semiparametric Mixture Cure Models
Description: An R-package for Estimating Semiparametric PH and AFT Mixture Cure Models.
Author: Chao Cai [aut, cre],
Songfeng Wang [aut],
Wenbin Lu [aut],
Jiajia Zhang [aut]
Maintainer: Chao Cai <caic@mailbox.sc.edu>
Diff between smcure versions 2.1 dated 2022-05-10 and 2.2 dated 2025-09-21
DESCRIPTION | 28 +++++-- MD5 | 6 - R/em.R | 84 ++++++++++----------- R/smcure.R | 240 ++++++++++++++++++++++++++++++------------------------------ 4 files changed, 187 insertions(+), 171 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-09 0.1.3
2022-05-18 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-16 0.1.0