Title: Permutation-Based All-Resolutions Inference
Description: Computes the All-Resolution Inference method in the permutation framework, i.e., simultaneous lower confidence bounds for the number of true discoveries. <doi:10.1002/sim.9725>.
Author: Angela Andreella [aut, cre]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between pARI versions 1.1.2 dated 2024-09-06 and 1.1.3 dated 2025-09-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/lambdaOpt.R | 1 - inst/doc/intro.html | 2 +- src/Makevars | 1 - src/Makevars.win | 1 - src/lambdaCalibrate.cpp | 17 ++++++++++------- 7 files changed, 22 insertions(+), 22 deletions(-)
Title: Database for Experiment Dataset
Description: A 'SQLite' database is designed to store all information
of experiment-based data including metadata, experiment design,
managements, phenotypic values and climate records. The dataset can be
imported from an 'Excel' file.
Author: Bangyou Zheng [aut, cre]
Maintainer: Bangyou Zheng <bangyou.zheng@csiro.au>
Diff between expDB versions 0.1.0 dated 2021-10-08 and 0.3.0 dated 2025-09-23
DESCRIPTION | 16 ++--- MD5 | 13 ++-- NAMESPACE | 111 ++++++++++++++++++++-------------------- R/expdb_met.R | 26 ++++----- R/phenology.R |only README.md | 19 ++++++ inst/extdata/expdb_example.xlsx |binary man/approx_zadoks.Rd |only tests/testthat/test-phenology.R |only 9 files changed, 103 insertions(+), 82 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013, Lemant et al. 2022)
<doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph] ,
Emmanuel Paradis [cph] ,
Robert Noble [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.16.1 dated 2025-08-24 and 2.0.0 dated 2025-09-23
TreeTools-1.16.1/TreeTools/man/EnforceOutgroup.Rd |only TreeTools-1.16.1/TreeTools/man/SpectrumLegend.Rd |only TreeTools-2.0.0/TreeTools/DESCRIPTION | 22 TreeTools-2.0.0/TreeTools/MD5 | 289 TreeTools-2.0.0/TreeTools/NAMESPACE | 1013 +-- TreeTools-2.0.0/TreeTools/NEWS.md | 21 TreeTools-2.0.0/TreeTools/R/AddTip.R | 550 - TreeTools-2.0.0/TreeTools/R/Cherries.R |only TreeTools-2.0.0/TreeTools/R/ClusterTable.R | 250 TreeTools-2.0.0/TreeTools/R/Consensus.R | 297 TreeTools-2.0.0/TreeTools/R/ConsistentSplits.R | 84 TreeTools-2.0.0/TreeTools/R/Decompose.R | 330 - TreeTools-2.0.0/TreeTools/R/DropTip.R | 694 +- TreeTools-2.0.0/TreeTools/R/LongBranchScore.R | 150 TreeTools-2.0.0/TreeTools/R/MatchStrings.R | 66 TreeTools-2.0.0/TreeTools/R/PathLengths.R | 96 TreeTools-2.0.0/TreeTools/R/PhyToString.R | 286 TreeTools-2.0.0/TreeTools/R/RcppExports-manual.R | 64 TreeTools-2.0.0/TreeTools/R/RcppExports.R | 4 TreeTools-2.0.0/TreeTools/R/Reweight.R | 220 TreeTools-2.0.0/TreeTools/R/RoguePlot.R | 596 - TreeTools-2.0.0/TreeTools/R/SplitFunctions.R | 909 +- TreeTools-2.0.0/TreeTools/R/Splits.R | 1221 +-- TreeTools-2.0.0/TreeTools/R/Stemwardness.R | 6 TreeTools-2.0.0/TreeTools/R/Support.R | 347 - TreeTools-2.0.0/TreeTools/R/TopologyOnly.R | 84 TreeTools-2.0.0/TreeTools/R/TotalCopheneticIndex.R | 3 TreeTools-2.0.0/TreeTools/R/TreeNumber.R | 6 TreeTools-2.0.0/TreeTools/R/Treeness.R | 116 TreeTools-2.0.0/TreeTools/R/data.R | 180 TreeTools-2.0.0/TreeTools/R/helper_functions.R | 289 TreeTools-2.0.0/TreeTools/R/match.R | 13 TreeTools-2.0.0/TreeTools/R/mst.R | 3 TreeTools-2.0.0/TreeTools/R/parse_files.R | 1822 ++--- TreeTools-2.0.0/TreeTools/R/phylo.R | 644 +- TreeTools-2.0.0/TreeTools/R/split_analysis.R | 3 TreeTools-2.0.0/TreeTools/R/tree_descendants.R | 287 TreeTools-2.0.0/TreeTools/R/tree_display.R | 4 TreeTools-2.0.0/TreeTools/R/tree_generation.R | 1066 +-- TreeTools-2.0.0/TreeTools/R/tree_information.R | 11 TreeTools-2.0.0/TreeTools/R/tree_numbering.R | 1323 ++-- TreeTools-2.0.0/TreeTools/R/tree_properties.R | 1156 +-- TreeTools-2.0.0/TreeTools/R/tree_rearrangement.R | 1291 ++-- TreeTools-2.0.0/TreeTools/R/tree_shape.R | 23 TreeTools-2.0.0/TreeTools/build/partial.rdb |binary TreeTools-2.0.0/TreeTools/build/vignette.rds |binary TreeTools-2.0.0/TreeTools/inst/REFERENCES.bib | 734 +- TreeTools-2.0.0/TreeTools/inst/WORDLIST | 250 TreeTools-2.0.0/TreeTools/inst/apa-old-doi-prefix.csl | 3172 +++++----- TreeTools-2.0.0/TreeTools/inst/doc/filesystem-navigation.html | 4 TreeTools-2.0.0/TreeTools/inst/doc/load-data.Rmd | 428 - TreeTools-2.0.0/TreeTools/inst/doc/load-data.html | 4 TreeTools-2.0.0/TreeTools/inst/doc/load-trees.html | 4 TreeTools-2.0.0/TreeTools/inst/include/TreeTools/SplitList.h | 12 TreeTools-2.0.0/TreeTools/inst/include/TreeTools/n_cherries.h |only TreeTools-2.0.0/TreeTools/man/AddTip.Rd | 281 TreeTools-2.0.0/TreeTools/man/AncestorEdge.Rd | 106 TreeTools-2.0.0/TreeTools/man/Cherries.Rd |only TreeTools-2.0.0/TreeTools/man/CladisticInfo.Rd | 6 TreeTools-2.0.0/TreeTools/man/ClusterTable.Rd | 160 TreeTools-2.0.0/TreeTools/man/CollapseNode.Rd | 1 TreeTools-2.0.0/TreeTools/man/ConsensusWithout.Rd | 210 TreeTools-2.0.0/TreeTools/man/Decompose.Rd | 166 TreeTools-2.0.0/TreeTools/man/DescendantEdges.Rd | 170 TreeTools-2.0.0/TreeTools/man/DropTip.Rd | 281 TreeTools-2.0.0/TreeTools/man/EdgeAncestry.Rd | 124 TreeTools-2.0.0/TreeTools/man/EndSentence.Rd | 64 TreeTools-2.0.0/TreeTools/man/GenerateTree.Rd | 188 TreeTools-2.0.0/TreeTools/man/ImposeConstraint.Rd | 1 TreeTools-2.0.0/TreeTools/man/KeptPaths.Rd | 1 TreeTools-2.0.0/TreeTools/man/KeptVerts.Rd | 1 TreeTools-2.0.0/TreeTools/man/LeafLabelInterchange.Rd | 1 TreeTools-2.0.0/TreeTools/man/ListAncestors.Rd | 218 TreeTools-2.0.0/TreeTools/man/LongBranch.Rd | 127 TreeTools-2.0.0/TreeTools/man/MakeTreeBinary.Rd | 109 TreeTools-2.0.0/TreeTools/man/MatchEdges.Rd | 135 TreeTools-2.0.0/TreeTools/man/MatchStrings.Rd | 80 TreeTools-2.0.0/TreeTools/man/MatrixToPhyDat.Rd | 150 TreeTools-2.0.0/TreeTools/man/MorphoBankDecode.Rd | 58 TreeTools-2.0.0/TreeTools/man/NSplits.Rd | 169 TreeTools-2.0.0/TreeTools/man/NTip.Rd | 137 TreeTools-2.0.0/TreeTools/man/Neworder.Rd | 128 TreeTools-2.0.0/TreeTools/man/NodeNumbers.Rd | 111 TreeTools-2.0.0/TreeTools/man/PathLengths.Rd | 115 TreeTools-2.0.0/TreeTools/man/PhyToString.Rd | 212 TreeTools-2.0.0/TreeTools/man/ReadCharacters.Rd | 288 TreeTools-2.0.0/TreeTools/man/Renumber.Rd | 1 TreeTools-2.0.0/TreeTools/man/RenumberTips.Rd | 1 TreeTools-2.0.0/TreeTools/man/Reorder.Rd | 559 - TreeTools-2.0.0/TreeTools/man/Reweight.Rd | 156 TreeTools-2.0.0/TreeTools/man/RightmostCharacter.Rd | 72 TreeTools-2.0.0/TreeTools/man/RoguePlot.Rd | 3 TreeTools-2.0.0/TreeTools/man/RootTree.Rd | 191 TreeTools-2.0.0/TreeTools/man/SortTree.Rd | 1 TreeTools-2.0.0/TreeTools/man/SplitConsistent.Rd | 90 TreeTools-2.0.0/TreeTools/man/SplitFrequency.Rd | 185 TreeTools-2.0.0/TreeTools/man/Splits.Rd | 12 TreeTools-2.0.0/TreeTools/man/SplitsInBinaryTree.Rd | 159 TreeTools-2.0.0/TreeTools/man/Subsplit.Rd | 96 TreeTools-2.0.0/TreeTools/man/Subtree.Rd | 123 TreeTools-2.0.0/TreeTools/man/SupportColour.Rd | 4 TreeTools-2.0.0/TreeTools/man/TipLabels.Rd | 249 TreeTools-2.0.0/TreeTools/man/TipTimedTree.Rd | 1 TreeTools-2.0.0/TreeTools/man/TopologyOnly.Rd | 46 TreeTools-2.0.0/TreeTools/man/TreeIsRooted.Rd | 83 TreeTools-2.0.0/TreeTools/man/TreeShape.Rd | 320 - TreeTools-2.0.0/TreeTools/man/Treeness.Rd | 111 TreeTools-2.0.0/TreeTools/man/TrivialSplits.Rd | 96 TreeTools-2.0.0/TreeTools/man/TrivialTree.Rd | 125 TreeTools-2.0.0/TreeTools/man/Unquote.Rd | 64 TreeTools-2.0.0/TreeTools/man/brewer.Rd | 66 TreeTools-2.0.0/TreeTools/man/match.Splits.Rd | 121 TreeTools-2.0.0/TreeTools/man/match.multiPhylo.Rd | 144 TreeTools-2.0.0/TreeTools/man/sapply64.Rd | 164 TreeTools-2.0.0/TreeTools/src/RcppExports.cpp | 14 TreeTools-2.0.0/TreeTools/src/n_cherries.cpp |only TreeTools-2.0.0/TreeTools/tests/testthat/_snaps/RoguePlot/rogueplot-trees1.svg | 106 TreeTools-2.0.0/TreeTools/tests/testthat/_snaps/RoguePlot/rogueplot-trees2.svg | 82 TreeTools-2.0.0/TreeTools/tests/testthat/_snaps/Support/labelsplits-nameless.svg | 172 TreeTools-2.0.0/TreeTools/tests/testthat/_snaps/Support/labelsplits-names.svg | 148 TreeTools-2.0.0/TreeTools/tests/testthat/test-AddTip.R | 356 - TreeTools-2.0.0/TreeTools/tests/testthat/test-Cherries.R |only TreeTools-2.0.0/TreeTools/tests/testthat/test-ClusterTable.R | 274 TreeTools-2.0.0/TreeTools/tests/testthat/test-Decompose.R | 152 TreeTools-2.0.0/TreeTools/tests/testthat/test-DropTip.R | 504 - TreeTools-2.0.0/TreeTools/tests/testthat/test-LongBranchScore.R | 36 TreeTools-2.0.0/TreeTools/tests/testthat/test-MatchStrings.R | 26 TreeTools-2.0.0/TreeTools/tests/testthat/test-PathLengths.R | 70 TreeTools-2.0.0/TreeTools/tests/testthat/test-PhyToString.R | 150 TreeTools-2.0.0/TreeTools/tests/testthat/test-ReadTntTree.R | 290 TreeTools-2.0.0/TreeTools/tests/testthat/test-Reweight.R | 92 TreeTools-2.0.0/TreeTools/tests/testthat/test-RoguePlot.R | 336 - TreeTools-2.0.0/TreeTools/tests/testthat/test-SplitConsistent.R | 72 TreeTools-2.0.0/TreeTools/tests/testthat/test-SplitFunctions.R | 452 - TreeTools-2.0.0/TreeTools/tests/testthat/test-Splits.R | 1101 +-- TreeTools-2.0.0/TreeTools/tests/testthat/test-Support.R | 116 TreeTools-2.0.0/TreeTools/tests/testthat/test-TopologyOnly.R | 54 TreeTools-2.0.0/TreeTools/tests/testthat/test-Treeness.R | 38 TreeTools-2.0.0/TreeTools/tests/testthat/test-consensus.R | 220 TreeTools-2.0.0/TreeTools/tests/testthat/test-helper_functions.R | 22 TreeTools-2.0.0/TreeTools/tests/testthat/test-match.R | 58 TreeTools-2.0.0/TreeTools/tests/testthat/test-parsers.R | 426 - TreeTools-2.0.0/TreeTools/tests/testthat/test-split_analysis.R | 22 TreeTools-2.0.0/TreeTools/tests/testthat/test-tree_descendants.R | 2 TreeTools-2.0.0/TreeTools/tests/testthat/test-tree_generation.R | 438 - TreeTools-2.0.0/TreeTools/tests/testthat/test-tree_properties.R | 362 - TreeTools-2.0.0/TreeTools/tests/testthat/test-tree_rearrange.R | 830 +- TreeTools-2.0.0/TreeTools/tests/testthat/testdata/nonPreCons.nex | 48 TreeTools-2.0.0/TreeTools/vignettes/load-data.Rmd | 428 - 149 files changed, 17440 insertions(+), 17545 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package and then
attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between pkgload versions 1.4.0 dated 2024-06-28 and 1.4.1 dated 2025-09-23
DESCRIPTION | 14 +- LICENSE |only MD5 | 110 ++++++++-------- NEWS.md | 26 +++ R/compilation-db.R | 125 ++++++++++++------- R/dev-example.R | 27 ++-- R/dev-help.R | 30 +++- R/dev-meta.R | 4 R/dev-topic.R | 4 R/enc.R | 10 + R/imports-env.R | 54 +++++--- R/load-code.R | 26 ++- R/load-data.R | 12 + R/load-depends.R | 1 R/load-dll.R | 44 ++++-- R/load.R | 74 +++++++---- R/namespace-env.R | 78 +++++++---- R/package-deps.R | 17 +- R/package-env.R | 31 ++-- R/package.R | 22 +-- R/remove-s4-class.R | 21 ++- R/run-loadhooks.R | 18 +- R/shims.R | 35 +++-- R/source.R | 19 ++ R/unload.R | 20 ++- R/utils.R | 85 ++++++++---- R/withr-shims.R |only R/zzz.R | 11 - man/load_all.Rd | 18 ++ tests/testthat/test-depend.R | 11 + tests/testthat/test-dll.R | 22 ++- tests/testthat/test-examples.R | 19 ++ tests/testthat/test-extraction.R | 48 ++++--- tests/testthat/test-help.R | 49 ++++--- tests/testthat/test-imports.R | 1 tests/testthat/test-load-hooks.R | 12 - tests/testthat/test-load.R | 17 +- tests/testthat/test-metadata.R | 3 tests/testthat/test-namespace-env.R | 2 tests/testthat/test-namespace.R | 24 +-- tests/testthat/test-po.R | 15 +- tests/testthat/test-s4-export.R | 2 tests/testthat/test-s4-sort.R | 3 tests/testthat/test-s4-unload.R | 20 ++- tests/testthat/test-shim.R | 74 +++++++---- tests/testthat/testActiveBindings/R/bindings.r | 1 tests/testthat/testCollateAbsent/R/a.r | 2 tests/testthat/testCollateAbsent/R/b.r | 2 tests/testthat/testCollateAbsent/R/c.r | 2 tests/testthat/testCollateExtra/R/a.r | 2 tests/testthat/testCollateMissing/R/a.r | 2 tests/testthat/testCollateMissing/R/b.r | 2 tests/testthat/testHooks/R/a.r | 2 tests/testthat/testLibDynam/R/zzz.R | 3 tests/testthat/testLoadLazy/R/bindings.r | 1 tests/testthat/testS4import/R/all.r | 3 tests/testthat/testUnknownMacro/R/testUnknownMacro.R | 3 57 files changed, 819 insertions(+), 464 deletions(-)
Title: 'R' 'SDK' and Exporters for 'OpenTelemetry'
Description: 'OpenTelemetry' is a collection of tools,
'APIs', and 'SDKs' used to instrument, generate, collect, and export
telemetry data (metrics, logs, and traces) for analysis in order to
understand your software's performance and behavior.
This package contains the 'OpenTelemetry' 'SDK', and exporters.
Use this package to export traces, metrics, logs from instrumented
'R' code. Use the 'otel' package to instrument your 'R' code for
'OpenTelemetry'.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
opentelemetry-cpp authors [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between otelsdk versions 0.2.0 dated 2025-09-10 and 0.2.1 dated 2025-09-23
DESCRIPTION | 9 +++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 8 ++++++++ R/docs.R | 3 ++- R/onload.R | 2 -- configure | 17 ++++++++++++++++- man/environmentvariables.Rd | 3 ++- src/Makevars.in | 8 +++++--- src/context.c | 2 +- tests/testthat/_snaps/current.md | 2 +- tests/testthat/test-meter-provider-stdout.R | 1 + tests/testthat/test-meter.R | 1 + tests/testthat/test-print.R | 1 + 13 files changed, 55 insertions(+), 26 deletions(-)
Title: Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI (fMRI) Data
Description: Package BHMSMAfMRI performs Bayesian hierarchical multi-subject multiscale analysis of fMRI data as described in Sanyal & Ferreira (2012) <DOI:10.1016/j.neuroimage.2012.08.041>, or other multiscale data, using wavelet-based prior that borrows strength across subjects and provides posterior smoothed images of the effect sizes and samples from the posterior distribution.
Author: Nilotpal Sanyal [aut, cre] ,
Marco A.R. Ferreira [aut]
Maintainer: Nilotpal Sanyal <nilotpal.sanyal@gmail.com>
Diff between BHMSMAfMRI versions 2.2 dated 2024-06-12 and 2.3 dated 2025-09-23
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/BHMSMAfMRIvignette.R | 14 +++++++------- inst/doc/BHMSMAfMRIvignette.pdf |binary man/BHMSMAfMRI-package.Rd | 4 ++-- src/BHMSMA.cpp | 2 +- 8 files changed, 27 insertions(+), 22 deletions(-)
Title: Functions for Atomic Force Microscope Force-Distance Curves
Analysis
Description: Set of functions for analyzing Atomic Force Microscope (AFM) force-distance curves. It allows to obtain the contact and unbinding points, perform the baseline correction, estimate the Young's modulus, fit up to two exponential decay function to a stress-relaxation / creep experiment, obtain adhesion energies. These operations can be done either over a single F-d curve or over a set of F-d curves in batch mode.
Author: Rafael Benitez [aut, cre],
Vicente Jose Bolos [aut],
Jose-Luis Toca-Herrera [aut]
Maintainer: Rafael Benitez <rabesua@uv.es>
Diff between afmToolkit versions 0.0.1 dated 2017-04-03 and 1.0.0 dated 2025-09-23
afmToolkit-0.0.1/afmToolkit/R/afmExpDecay.R |only afmToolkit-0.0.1/afmToolkit/README.md |only afmToolkit-0.0.1/afmToolkit/man/afmExpDecay.Rd |only afmToolkit-1.0.0/afmToolkit/DESCRIPTION | 26 afmToolkit-1.0.0/afmToolkit/MD5 | 94 - afmToolkit-1.0.0/afmToolkit/NAMESPACE | 7 afmToolkit-1.0.0/afmToolkit/R/afmBaselineCorrection.R | 333 ++--- afmToolkit-1.0.0/afmToolkit/R/afmContactPoint.R | 321 ++--- afmToolkit-1.0.0/afmToolkit/R/afmDetachPoint.R | 277 ++-- afmToolkit-1.0.0/afmToolkit/R/afmExtract.R | 583 ++++++---- afmToolkit-1.0.0/afmToolkit/R/afmHysteresis.R |only afmToolkit-1.0.0/afmToolkit/R/afmIndentation.R | 98 - afmToolkit-1.0.0/afmToolkit/R/afmReadJPK.R | 322 +++-- afmToolkit-1.0.0/afmToolkit/R/afmReadJPKFolder.R | 2 afmToolkit-1.0.0/afmToolkit/R/afmReadJPKMultiFolder.R |only afmToolkit-1.0.0/afmToolkit/R/afmReadJPKMultiIndent.R |only afmToolkit-1.0.0/afmToolkit/R/afmReadVeeco.R | 180 +-- afmToolkit-1.0.0/afmToolkit/R/afmReadVeecoFolder.R | 57 afmToolkit-1.0.0/afmToolkit/R/afmRelax.R |only afmToolkit-1.0.0/afmToolkit/R/afmStitch.R |only afmToolkit-1.0.0/afmToolkit/R/afmYoungModulus.R | 382 ++++-- afmToolkit-1.0.0/afmToolkit/R/afmZeroPointSlope.R | 218 ++- afmToolkit-1.0.0/afmToolkit/R/append.afmdata.R | 49 afmToolkit-1.0.0/afmToolkit/R/is.afmdata.R | 2 afmToolkit-1.0.0/afmToolkit/R/is.afmmulti.R |only afmToolkit-1.0.0/afmToolkit/R/plot.afmdata.R | 6 afmToolkit-1.0.0/afmToolkit/data/batchExperiment.RData |binary afmToolkit-1.0.0/afmToolkit/inst/force-save-JPK-multiIndent.txt.gz |only afmToolkit-1.0.0/afmToolkit/inst/veecoFolder/veeco_file4.txt.gz |binary afmToolkit-1.0.0/afmToolkit/man/afmAdhesionEnergy.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/afmBaselineCorrection.Rd | 14 afmToolkit-1.0.0/afmToolkit/man/afmContactPoint.Rd | 16 afmToolkit-1.0.0/afmToolkit/man/afmDetachPoint.Rd | 16 afmToolkit-1.0.0/afmToolkit/man/afmExtract.Rd | 12 afmToolkit-1.0.0/afmToolkit/man/afmHysteresis.Rd |only afmToolkit-1.0.0/afmToolkit/man/afmIndentation.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/afmReadJPK.Rd | 17 afmToolkit-1.0.0/afmToolkit/man/afmReadJPKFolder.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/afmReadJPKMultiFolder.Rd |only afmToolkit-1.0.0/afmToolkit/man/afmReadJPKMultiIndent.Rd |only afmToolkit-1.0.0/afmToolkit/man/afmReadVeeco.Rd | 25 afmToolkit-1.0.0/afmToolkit/man/afmReadVeecoFolder.Rd | 5 afmToolkit-1.0.0/afmToolkit/man/afmRelax.Rd |only afmToolkit-1.0.0/afmToolkit/man/afmStitch.Rd |only afmToolkit-1.0.0/afmToolkit/man/afmYoungModulus.Rd | 31 afmToolkit-1.0.0/afmToolkit/man/afmZeroPointSlope.Rd | 11 afmToolkit-1.0.0/afmToolkit/man/afmdata.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/afmexperiment.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/append.afmdata.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/batchExperiment.Rd | 7 afmToolkit-1.0.0/afmToolkit/man/is.afmdata.Rd | 3 afmToolkit-1.0.0/afmToolkit/man/is.afmexperiment.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/is.afmmulti.Rd |only afmToolkit-1.0.0/afmToolkit/man/plot.afmdata.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/summary.Rd | 1 afmToolkit-1.0.0/afmToolkit/man/windowedFit.Rd | 1 56 files changed, 1850 insertions(+), 1274 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite',
and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or
other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Adam Black [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.4.0 dated 2025-01-30 and 7.0.0 dated 2025-09-23
DatabaseConnector-6.4.0/DatabaseConnector/R/DbiDateFunctions.R |only DatabaseConnector-6.4.0/DatabaseConnector/java/org/ohdsi/databaseConnector/DebugRtoSqlTranslation.java |only DatabaseConnector-6.4.0/DatabaseConnector/java/org/ohdsi/databaseConnector/RFunctionToTranslate.java |only DatabaseConnector-6.4.0/DatabaseConnector/java/org/ohdsi/databaseConnector/RtoSqlTranslator.java |only DatabaseConnector-6.4.0/DatabaseConnector/man/dateAdd.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/dateDiff.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/dateFromParts.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/day.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/dbExecute-DatabaseConnectorConnection-character-method.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/dbGetQuery-DatabaseConnectorConnection-character-method.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/eoMonth.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/lowLevelExecuteSql.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/lowLevelQuerySql.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/lowLevelQuerySqlToAndromeda.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/month.Rd |only DatabaseConnector-6.4.0/DatabaseConnector/man/year.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/DESCRIPTION | 18 DatabaseConnector-7.0.0/DatabaseConnector/MD5 | 120 +- DatabaseConnector-7.0.0/DatabaseConnector/NAMESPACE | 29 DatabaseConnector-7.0.0/DatabaseConnector/NEWS.md | 32 DatabaseConnector-7.0.0/DatabaseConnector/R/Andromeda.R | 274 +----- DatabaseConnector-7.0.0/DatabaseConnector/R/BulkLoad.R | 3 DatabaseConnector-7.0.0/DatabaseConnector/R/Compression.R | 2 DatabaseConnector-7.0.0/DatabaseConnector/R/Connect.R | 92 -- DatabaseConnector-7.0.0/DatabaseConnector/R/CtasHack.R | 33 DatabaseConnector-7.0.0/DatabaseConnector/R/DBI.R | 426 +++------ DatabaseConnector-7.0.0/DatabaseConnector/R/DataHash.R | 8 DatabaseConnector-7.0.0/DatabaseConnector/R/DatabaseConnector.R | 11 DatabaseConnector-7.0.0/DatabaseConnector/R/Drivers.R | 6 DatabaseConnector-7.0.0/DatabaseConnector/R/InsertTable.R | 116 +- DatabaseConnector-7.0.0/DatabaseConnector/R/ListTables.R | 38 DatabaseConnector-7.0.0/DatabaseConnector/R/LowLevelFunctions.R |only DatabaseConnector-7.0.0/DatabaseConnector/R/RStudio.R | 2 DatabaseConnector-7.0.0/DatabaseConnector/R/Sql.R | 454 +--------- DatabaseConnector-7.0.0/DatabaseConnector/R/backend-DatabaseConnector.R |only DatabaseConnector-7.0.0/DatabaseConnector/README.md | 7 DatabaseConnector-7.0.0/DatabaseConnector/inst/csv/jarChecksum.txt | 2 DatabaseConnector-7.0.0/DatabaseConnector/inst/doc/Connecting.pdf |binary DatabaseConnector-7.0.0/DatabaseConnector/inst/doc/DbiAndDbplyr.pdf |binary DatabaseConnector-7.0.0/DatabaseConnector/inst/doc/Querying.pdf |binary DatabaseConnector-7.0.0/DatabaseConnector/inst/java/DatabaseConnector.jar |binary DatabaseConnector-7.0.0/DatabaseConnector/java/DatabaseConnector.jardesc | 2 DatabaseConnector-7.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/BatchedInsert.java | 44 DatabaseConnector-7.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/BatchedQuery.java | 202 ++-- DatabaseConnector-7.0.0/DatabaseConnector/man/DatabaseConnector-package.Rd | 1 DatabaseConnector-7.0.0/DatabaseConnector/man/dbAppendTable-DatabaseConnectorConnection-character-method.Rd | 8 DatabaseConnector-7.0.0/DatabaseConnector/man/dbCreateTable-DatabaseConnectorConnection-method.Rd | 8 DatabaseConnector-7.0.0/DatabaseConnector/man/dbExecute-DatabaseConnectorDbiConnection-character-method.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/man/dbExecute-DatabaseConnectorJdbcConnection-character-method.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/man/dbGetQuery-DatabaseConnectorDbiConnection-character-method.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/man/dbGetQuery-DatabaseConnectorJdbcConnection-character-method.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/man/dbReadTable-DatabaseConnectorConnection-character-method.Rd | 15 DatabaseConnector-7.0.0/DatabaseConnector/man/dbRemoveTable-DatabaseConnectorConnection-ANY-method.Rd | 15 DatabaseConnector-7.0.0/DatabaseConnector/man/dbSendQuery-DatabaseConnectorDbiConnection-character-method.Rd | 4 DatabaseConnector-7.0.0/DatabaseConnector/man/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.Rd | 4 DatabaseConnector-7.0.0/DatabaseConnector/man/dbSendStatement-DatabaseConnectorConnection-character-method.Rd | 4 DatabaseConnector-7.0.0/DatabaseConnector/man/dbWriteTable-DatabaseConnectorConnection-ANY-method.Rd | 8 DatabaseConnector-7.0.0/DatabaseConnector/man/downloadJdbcDrivers.Rd | 2 DatabaseConnector-7.0.0/DatabaseConnector/man/getAvailableJavaHeapSpace.Rd | 2 DatabaseConnector-7.0.0/DatabaseConnector/man/insertTable.Rd | 3 DatabaseConnector-7.0.0/DatabaseConnector/man/querySql.Rd | 11 DatabaseConnector-7.0.0/DatabaseConnector/man/reexports.Rd |only DatabaseConnector-7.0.0/DatabaseConnector/man/renderTranslateExecuteSql.Rd | 3 DatabaseConnector-7.0.0/DatabaseConnector/man/renderTranslateQueryApplyBatched.Rd | 14 DatabaseConnector-7.0.0/DatabaseConnector/man/renderTranslateQuerySql.Rd | 14 DatabaseConnector-7.0.0/DatabaseConnector/man/renderTranslateQuerySqlToAndromeda.Rd | 5 DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/dbplyrTestFunction.R | 210 ++-- DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/setup.R | 48 - DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/test-dbiConnection.R |only DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/test-dbplyr.R | 54 - DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/test-fetchResults.R | 4 DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/test-insertTable.R | 72 - DatabaseConnector-7.0.0/DatabaseConnector/tests/testthat/test-sendUpdates.R | 10 73 files changed, 972 insertions(+), 1468 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Optimal Bayesian Experimental Design using the ACE Algorithm
Description: Optimal Bayesian experimental design using the approximate coordinate exchange (ACE) algorithm.
Author: Antony M. Overstall [aut, cre],
David C. Woods [aut],
Maria Adamou & Damianos Michaelides [aut]
Maintainer: Antony M. Overstall <A.M.Overstall@soton.ac.uk>
Diff between acebayes versions 1.10 dated 2020-10-05 and 1.11 dated 2025-09-23
DESCRIPTION | 24 ++++++++++++++++----- MD5 | 12 +++++----- R/sysdata.rda |binary man/acebayes-package.Rd | 4 +-- man/overstallwoods.Rd | 53 ++++++++++++++++++++++++++---------------------- src/Makevars | 13 ----------- src/Makevars.win | 13 ----------- 7 files changed, 57 insertions(+), 62 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-15 0.0.8
2021-08-04 0.0.7
2021-02-26 0.0.6
2021-01-27 0.0.5
2021-01-22 0.0.4
2021-01-05 0.0.3
2020-12-17 0.0.2
2020-12-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-12 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-13 11.3.5.101
2020-12-21 11.3.0.1
2020-08-04 11.2.2.1
2020-06-23 11.2.2
2020-03-26 11.2.1
2019-12-10 11.2.0
2019-10-28 11.1.4.25
2018-09-14 10.11.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-07 0.3.0
2024-01-23 0.2.0
2023-11-27 0.1.9
2023-11-17 0.1.8
2023-11-06 0.1.6
2023-11-03 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-19 1.0.4
2023-01-12 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-01 0.1.2
2022-08-24 0.1.1
2021-07-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-05 0.2.4
Title: Multivariate Difference Between Two Groups
Description: Estimation of multivariate differences between two groups (e.g., multivariate sex differences) with regularized regression methods and predictive approach. See Ilmarinen et al. (2023) <doi:10.1177/08902070221088155>. Deconstructing difference score correlations (e.g., gender-equality paradox), see Ilmarinen & Lönnqvist (2024) <doi:10.1037/pspp0000508>.
Includes also tools that help in understanding difference score reliability, conditional intra-class correlations, tail-dependency, and heterogeneity of variance estimates. Package development was supported by the Academy of Finland research grant 338891.
Author: Ville-Juhani Ilmarinen [aut, cre]
Maintainer: Ville-Juhani Ilmarinen <vj.ilmarinen@gmail.com>
Diff between multid versions 1.0.1 dated 2025-09-04 and 1.0.2 dated 2025-09-23
DESCRIPTION | 8 MD5 | 15 NEWS.md | 5 R/data_documentation.R |only data |only inst/doc/multivariate_sex_differences_in_personality.R | 35 inst/doc/multivariate_sex_differences_in_personality.Rmd | 44 - inst/doc/multivariate_sex_differences_in_personality.html | 520 +++++++------- man/example_big5.Rd |only vignettes/multivariate_sex_differences_in_personality.Rmd | 44 - 10 files changed, 345 insertions(+), 326 deletions(-)
Title: Exporting Tools for 'rtables'
Description: Designed to create and display complex tables with R, the
'rtables' R package allows cells in an 'rtables' object to contain any
high-dimensional data structure, which can then be displayed with
cell-specific formatting instructions. Additionally, the
'rtables.officer' package supports export formats related to the
Microsoft Office software suite, including Microsoft Word ('docx') and
Microsoft PowerPoint ('pptx').
Author: Gabriel Becker [ctb],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [aut] ,
Joe Zhu [aut, cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables.officer versions 0.1.0 dated 2025-04-22 and 0.1.1 dated 2025-09-23
DESCRIPTION | 23 +++++---- MD5 | 28 ++++++------ NEWS.md | 5 ++ R/export_as_docx.R | 81 +++++++++++++++++++++++++++++++++-- R/theme_defaults.R | 4 + build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/export_rlistings.html | 9 ++- inst/doc/rtables.officer.html | 15 +++--- inst/docx_templates |only man/export_as_docx.Rd | 7 ++- man/tt_to_flextable.Rd | 4 + tests/testthat/test-export_as_docx.R | 52 +++++++++++++++++++++- tests/testthat/test-pagination.R | 10 ++-- 14 files changed, 189 insertions(+), 50 deletions(-)
More information about rtables.officer at CRAN
Permanent link
Title: Functions and C++ Header Files for Computation on Manifolds
Description: We provide a number of algorithms to estimate fundamental statistics including Fréchet mean and geometric median for manifold-valued data. Also, C++ header files are contained that implement elementary operations on manifolds such as Sphere, Grassmann, and others. See Bhattacharya and Bhattacharya (2012) <doi:10.1017/CBO9781139094764> if you are interested in statistics on manifolds, and Absil et al (2007, ISBN:9780691132983) on computational aspects of optimization on matrix manifolds.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between RiemBase versions 0.2.5 dated 2021-08-21 and 0.2.6 dated 2025-09-23
RiemBase-0.2.5/RiemBase/man/RiemBase-package.Rd |only RiemBase-0.2.6/RiemBase/DESCRIPTION | 14 ++++---- RiemBase-0.2.6/RiemBase/MD5 | 17 ++++------ RiemBase-0.2.6/RiemBase/R/RiemBase-package.R | 2 - RiemBase-0.2.6/RiemBase/R/init.R | 2 - RiemBase-0.2.6/RiemBase/README.md | 2 - RiemBase-0.2.6/RiemBase/build/partial.rdb |binary RiemBase-0.2.6/RiemBase/inst/include/manifolds/riem_04stiefel.h | 2 - RiemBase-0.2.6/RiemBase/src/Makevars | 1 RiemBase-0.2.6/RiemBase/src/Makevars.win | 1 10 files changed, 18 insertions(+), 23 deletions(-)
Title: Power and Sample Size for (Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used in bioequivalence studies. Use known.designs() to
see the designs supported. Power and sample size can be obtained based on
different methods, amongst them prominently the TOST procedure (two one-sided
t-tests). See README and NEWS for further information.
Author: Detlew Labes [aut, cre] ,
Helmut Schuetz [aut] ,
Benjamin Lang [aut]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.5-6 dated 2024-03-18 and 1.5-7 dated 2025-09-23
DESCRIPTION | 13 ++++--- MD5 | 40 ++++++++++++------------ NEWS.md | 8 ++++ R/helper.R | 20 +++++------- README.md | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ABE.Rmd | 2 - inst/doc/ABE.html | 23 +++++++------ inst/doc/DP.html | 3 + inst/doc/Expected_Power_for_TOST.pdf |binary inst/doc/NI.html | 3 + inst/doc/PA.html | 17 +++++----- inst/doc/RSABE.Rmd | 58 +++++++++++++++++++---------------- inst/doc/RSABE.html | 13 ++++--- inst/doc/vignette.html | 5 +-- man/power.HVNTID.Rd | 12 +++++-- man/sampleN.HVNTID.Rd | 4 +- vignettes/ABE.Rmd | 2 - vignettes/RSABE.Rmd | 58 +++++++++++++++++++---------------- vignettes/RSABE.Rmd.orig | 12 +++++-- 21 files changed, 167 insertions(+), 128 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.9.0 dated 2025-06-05 and 0.9.9 dated 2025-09-23
fastplyr-0.9.0/fastplyr/R/reconstruct.R |only fastplyr-0.9.9/fastplyr/DESCRIPTION | 10 fastplyr-0.9.9/fastplyr/MD5 | 124 fastplyr-0.9.9/fastplyr/NAMESPACE | 29 fastplyr-0.9.9/fastplyr/NEWS.md | 276 +- fastplyr-0.9.9/fastplyr/R/abc.R | 60 fastplyr-0.9.9/fastplyr/R/collapse_utils.R | 76 fastplyr-0.9.9/fastplyr/R/cpp11.R | 144 - fastplyr-0.9.9/fastplyr/R/desc.R | 46 fastplyr-0.9.9/fastplyr/R/df_utils.R | 2 fastplyr-0.9.9/fastplyr/R/exprs.R |only fastplyr-0.9.9/fastplyr/R/f_arrange.R | 15 fastplyr-0.9.9/fastplyr/R/f_count.R | 46 fastplyr-0.9.9/fastplyr/R/f_distinct.R | 8 fastplyr-0.9.9/fastplyr/R/f_duplicates.R | 11 fastplyr-0.9.9/fastplyr/R/f_expand.R | 60 fastplyr-0.9.9/fastplyr/R/f_fill.R | 38 fastplyr-0.9.9/fastplyr/R/f_filter.R | 10 fastplyr-0.9.9/fastplyr/R/f_group_by.R | 28 fastplyr-0.9.9/fastplyr/R/f_group_data.R | 3 fastplyr-0.9.9/fastplyr/R/f_join.R | 20 fastplyr-0.9.9/fastplyr/R/f_nest_by.R | 8 fastplyr-0.9.9/fastplyr/R/f_reframe.R | 4 fastplyr-0.9.9/fastplyr/R/f_rowwise.R | 16 fastplyr-0.9.9/fastplyr/R/f_select.R | 4 fastplyr-0.9.9/fastplyr/R/f_slice.R | 112 fastplyr-0.9.9/fastplyr/R/f_summarise.R | 339 +- fastplyr-0.9.9/fastplyr/R/f_ungroup.R |only fastplyr-0.9.9/fastplyr/R/fastplyr-package.R | 12 fastplyr-0.9.9/fastplyr/R/fastplyr_options.R |only fastplyr-0.9.9/fastplyr/R/group_collapse.R | 36 fastplyr-0.9.9/fastplyr/R/group_id.R | 15 fastplyr-0.9.9/fastplyr/R/group_unaware.R |only fastplyr-0.9.9/fastplyr/R/imports.R | 5 fastplyr-0.9.9/fastplyr/R/list_tidy.R | 9 fastplyr-0.9.9/fastplyr/R/re-exports.R |only fastplyr-0.9.9/fastplyr/R/rebuild.R |only fastplyr-0.9.9/fastplyr/R/remove_na.R | 26 fastplyr-0.9.9/fastplyr/R/tidy_utils.R | 938 ++----- fastplyr-0.9.9/fastplyr/README.md | 428 ++- fastplyr-0.9.9/fastplyr/man/f_arrange.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_count.Rd | 10 fastplyr-0.9.9/fastplyr/man/f_distinct.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_duplicates.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_expand.Rd | 6 fastplyr-0.9.9/fastplyr/man/f_fill.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_filter.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_group_by.Rd | 14 fastplyr-0.9.9/fastplyr/man/f_nest_by.Rd | 8 fastplyr-0.9.9/fastplyr/man/f_rowwise.Rd | 4 fastplyr-0.9.9/fastplyr/man/f_slice.Rd | 26 fastplyr-0.9.9/fastplyr/man/f_ungroup.Rd |only fastplyr-0.9.9/fastplyr/man/fastplyr_options.Rd |only fastplyr-0.9.9/fastplyr/man/get_group_unaware_fns.Rd |only fastplyr-0.9.9/fastplyr/man/reexports.Rd |only fastplyr-0.9.9/fastplyr/man/remove_na.Rd | 6 fastplyr-0.9.9/fastplyr/src/cpp11.cpp | 301 +- fastplyr-0.9.9/fastplyr/src/expressions.cpp |only fastplyr-0.9.9/fastplyr/src/fastplyr.cpp | 800 ++---- fastplyr-0.9.9/fastplyr/src/fastplyr.h | 72 fastplyr-0.9.9/fastplyr/src/groups.cpp |only fastplyr-0.9.9/fastplyr/src/imports.cpp | 8 fastplyr-0.9.9/fastplyr/src/mask.cpp |only fastplyr-0.9.9/fastplyr/src/tidy.cpp | 1838 +++++--------- fastplyr-0.9.9/fastplyr/tests/testthat.R | 1 fastplyr-0.9.9/fastplyr/tests/testthat/test-df_utils.R | 3 fastplyr-0.9.9/fastplyr/tests/testthat/test-f_arrange.R | 1 fastplyr-0.9.9/fastplyr/tests/testthat/test-f_join.R |only fastplyr-0.9.9/fastplyr/tests/testthat/test-f_mutate.R |only fastplyr-0.9.9/fastplyr/tests/testthat/test-f_reframe.R |only fastplyr-0.9.9/fastplyr/tests/testthat/test-f_summarise.R | 158 + fastplyr-0.9.9/fastplyr/tests/testthat/test-tidy_utils.R |only 72 files changed, 2993 insertions(+), 3241 deletions(-)
Title: Extending the Range of Functions for Probability Distributions
Description: A consistent, unified and extensible
framework for estimation of parameters for probability distributions,
including parameter estimation procedures that allow for weighted samples;
the current set of distributions included are: the standard beta,
The four-parameter beta, Burr, gamma, Gumbel, Johnson SB and SU, Laplace,
logistic, normal, symmetric truncated normal, truncated normal,
symmetric-reflected truncated beta, standard symmetric-reflected truncated
beta, triangular, uniform, and Weibull distributions; decision criteria
and selections based on these decision criteria.
Author: Haizhen Wu [aut],
A. Jonathan R. Godfrey [aut],
Kondaswamy Govindaraju [aut],
Sarah Pirikahu [aut],
Oleksii Nikolaienko [cre, ctb]
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko@gmail.com>
Diff between ExtDist versions 0.7-3 dated 2025-06-09 and 0.7-4 dated 2025-09-23
DESCRIPTION | 8 ++--- MD5 | 14 +++++----- R/Normal_trunc_ab.R | 38 ++++++++++++++-------------- R/wmle.R | 2 - README.md | 6 +++- build/vignette.rds |binary inst/doc/ParaEst-and-DistSel-by-ExtDist.pdf |binary man/Normal_trunc_ab.Rd | 14 +++++----- 8 files changed, 43 insertions(+), 39 deletions(-)
Title: Lightweight Utilities for 'DIZ' R Package Development
Description: Lightweight utility functions used for the R package
development infrastructure inside the data integration centers ('DIZ')
to standardize and facilitate repetitive tasks such as setting up a
database connection or issuing notification messages and to avoid
redundancy.
Author: Jonathan M. Mang [aut, cre] ,
Lorenz A. Kapsner [aut] ,
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen, Germany [cph]
Maintainer: Jonathan M. Mang <jonathan.mang@uk-erlangen.de>
Diff between DIZtools versions 1.0.2 dated 2025-03-17 and 1.0.3 dated 2025-09-23
DESCRIPTION | 15 +++++++++------ MD5 | 10 +++++++--- NAMESPACE | 3 +++ R/get_package_names.R |only README.md | 7 ++----- man/calculate_check_digit.Rd |only man/get_package_names.Rd |only man/test_check_digit.Rd |only 8 files changed, 21 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-21 0.4.1
2023-01-16 0.4.0
2022-11-16 0.3.1
2022-10-05 0.3.0
2022-05-11 0.2.1
2022-03-11 0.1.1
2021-11-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-03 3.3.4
2024-06-12 3.3.3
2024-03-09 3.3.2
2023-09-12 3.3.1
2023-03-03 3.3.0
2022-11-18 3.2.1
2022-10-01 3.2.0
Title: R Interface for 'TiddlyWiki'
Description: 'TiddlyWiki' is a unique non-linear notebook for capturing, organising and sharing complex information. 'rtiddlywiki' is a R interface of 'TiddlyWiki' <https://tiddlywiki.com> to create new tiddler from Rmarkdown file, and then put into a local 'TiddlyWiki' node.js server if it is available.
Author: Bangyou Zheng [aut, cre]
Maintainer: Bangyou Zheng <bangyou.zheng@csiro.au>
Diff between rtiddlywiki versions 0.1.0 dated 2022-07-05 and 0.5.0 dated 2025-09-23
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Title: Visualising How Nonlinear Dimension Reduction Warps Your Data
Description: To construct a model in 2-D space from 2-D nonlinear
dimension reduction data and then lift it to the high-dimensional
space. Additionally, provides tools to visualise the model overlay the
data in 2-D and high-dimensional space. Furthermore, provides
summaries and diagnostics to evaluate the nonlinear dimension
reduction layout.
Author: Jayani P. Gamage [aut, cre] ,
Dianne Cook [aut] ,
Paul Harrison [aut] ,
Michael Lydeamore [aut] ,
Thiyanga S. Talagala [aut]
Maintainer: Jayani P. Gamage <jayanilakshika76@gmail.com>
Diff between quollr versions 0.3.7 dated 2025-07-22 and 0.3.13 dated 2025-09-23
quollr-0.3.13/quollr/DESCRIPTION | 8 quollr-0.3.13/quollr/MD5 | 156 - quollr-0.3.13/quollr/NAMESPACE | 8 quollr-0.3.13/quollr/NEWS.md | 4 quollr-0.3.13/quollr/R/2d.R | 79 quollr-0.3.13/quollr/R/data.R | 2 quollr-0.3.13/quollr/R/data_preprocessing.R | 22 quollr-0.3.13/quollr/R/highd.R | 27 quollr-0.3.13/quollr/R/link_plots.R | 14 quollr-0.3.13/quollr/R/model.R | 41 quollr-0.3.13/quollr/R/parameters.R | 18 quollr-0.3.13/quollr/R/prediction.R | 94 quollr-0.3.13/quollr/R/projection.R | 4 quollr-0.3.13/quollr/R/util.R | 10 quollr-0.3.13/quollr/data/scurve_model_obj.rda |binary quollr-0.3.13/quollr/data/scurve_plts.rda |binary quollr-0.3.13/quollr/inst/doc/quollr1quickstart.R | 4 quollr-0.3.13/quollr/inst/doc/quollr1quickstart.Rmd | 4 quollr-0.3.13/quollr/inst/doc/quollr1quickstart.html | 137 - quollr-0.3.13/quollr/inst/doc/quollr2dataprocessing.html | 5 quollr-0.3.13/quollr/inst/doc/quollr3hexbin.R | 12 quollr-0.3.13/quollr/inst/doc/quollr3hexbin.Rmd | 12 quollr-0.3.13/quollr/inst/doc/quollr3hexbin.html | 43 quollr-0.3.13/quollr/inst/doc/quollr4algo.R | 6 quollr-0.3.13/quollr/inst/doc/quollr4algo.Rmd | 6 quollr-0.3.13/quollr/inst/doc/quollr4algo.html | 99 quollr-0.3.13/quollr/inst/doc/quollr5summary.R | 16 quollr-0.3.13/quollr/inst/doc/quollr5summary.Rmd | 16 quollr-0.3.13/quollr/inst/doc/quollr5summary.html | 73 quollr-0.3.13/quollr/inst/doc/quollr6bestbinwidth.html | 7 quollr-0.3.13/quollr/inst/doc/quollr7bestfit.html | 7 quollr-0.3.13/quollr/man/assign_data.Rd | 6 quollr-0.3.13/quollr/man/augment.Rd | 23 quollr-0.3.13/quollr/man/augment.highd_vis_model.Rd |only quollr-0.3.13/quollr/man/calc_bins_y.Rd | 6 quollr-0.3.13/quollr/man/comb_all_data_model_error.Rd | 3 quollr-0.3.13/quollr/man/compute_mean_density_hex.Rd | 4 quollr-0.3.13/quollr/man/find_low_dens_hex.Rd | 8 quollr-0.3.13/quollr/man/find_non_empty_bins.Rd | 6 quollr-0.3.13/quollr/man/fit_highd_model.Rd | 10 quollr-0.3.13/quollr/man/gen_centroids.Rd | 6 quollr-0.3.13/quollr/man/gen_diffbin1_errors.Rd | 4 quollr-0.3.13/quollr/man/gen_edges.Rd | 2 quollr-0.3.13/quollr/man/glance.Rd | 20 quollr-0.3.13/quollr/man/glance.highd_vis_model.Rd |only quollr-0.3.13/quollr/man/group_hex_pts.Rd |only quollr-0.3.13/quollr/man/hex_binning.Rd | 6 quollr-0.3.13/quollr/man/merge_hexbin_centroids.Rd |only quollr-0.3.13/quollr/man/merge_hexbin_mean.Rd |only quollr-0.3.13/quollr/man/scurve_model_obj.Rd | 2 quollr-0.3.13/quollr/man/show_error_link_plots.Rd | 3 quollr-0.3.13/quollr/man/tri_bin_centroids.Rd | 2 quollr-0.3.13/quollr/src/2d.cpp | 4 quollr-0.3.13/quollr/src/Makevars | 3 quollr-0.3.13/quollr/tests/testthat/_snaps/2d.md | 71 quollr-0.3.13/quollr/tests/testthat/_snaps/geom_hexgrid/geom-hexgrid-basic-with-selected-bin-centroids.svg | 1010 ++++++++-- quollr-0.3.13/quollr/tests/testthat/_snaps/geom_trimesh/geom-trimesh-basic-with-selected-bin-centroids.svg | 557 +++++ quollr-0.3.13/quollr/tests/testthat/_snaps/highd.md | 28 quollr-0.3.13/quollr/tests/testthat/_snaps/link_plots.md | 56 quollr-0.3.13/quollr/tests/testthat/_snaps/model.md | 78 quollr-0.3.13/quollr/tests/testthat/_snaps/parameters.md | 57 quollr-0.3.13/quollr/tests/testthat/_snaps/prediction.md | 48 quollr-0.3.13/quollr/tests/testthat/_snaps/projection.md | 30 quollr-0.3.13/quollr/tests/testthat/_snaps/projection/2-d-projection-from-langevitour.svg | 352 +++ quollr-0.3.13/quollr/tests/testthat/test-2d.R | 27 quollr-0.3.13/quollr/tests/testthat/test-data_processing.R | 1 quollr-0.3.13/quollr/tests/testthat/test-geom_hexgrid.R | 2 quollr-0.3.13/quollr/tests/testthat/test-geom_trimesh.R | 3 quollr-0.3.13/quollr/tests/testthat/test-highd.R | 2 quollr-0.3.13/quollr/tests/testthat/test-link_plots.R | 9 quollr-0.3.13/quollr/tests/testthat/test-model.R | 14 quollr-0.3.13/quollr/tests/testthat/test-parameters.R | 8 quollr-0.3.13/quollr/tests/testthat/test-prediction.R | 22 quollr-0.3.13/quollr/tests/testthat/test-projection.R | 2 quollr-0.3.13/quollr/tests/testthat/test-util.R | 10 quollr-0.3.13/quollr/vignettes/quollr1quickstart.Rmd | 4 quollr-0.3.13/quollr/vignettes/quollr3hexbin.Rmd | 12 quollr-0.3.13/quollr/vignettes/quollr4algo.Rmd | 6 quollr-0.3.13/quollr/vignettes/quollr5summary.Rmd | 16 quollr-0.3.13/quollr/vignettes/quollr7bestfit_files/figure-html/unnamed-chunk-3-1.png |binary quollr-0.3.7/quollr/man/extract_hexbin_centroids.Rd |only quollr-0.3.7/quollr/man/extract_hexbin_mean.Rd |only quollr-0.3.7/quollr/man/find_pts.Rd |only 83 files changed, 2530 insertions(+), 947 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.7.4 dated 2025-08-23 and 0.8.0 dated 2025-09-23
DESCRIPTION | 8 ++-- MD5 | 31 +++++++++-------- NAMESPACE | 1 R/barplot.R | 85 ++++++++++++++++++++++++------------------------ R/corplot.R | 37 ++++++++++++++++---- R/dotplot.R | 2 + R/gsea.R | 1 R/heatmap.R | 4 +- R/jitterplot.R |only R/network.R | 11 ++++-- R/velocityplot.R | 7 +++ man/BarPlotAtomic.Rd | 2 - man/BarPlotGrouped.Rd | 2 - man/BarPlotSingle.Rd | 2 - man/JitterPlotAtomic.Rd |only man/barplot.Rd | 4 +- man/dotplot.Rd | 2 + man/jitterplot.Rd |only 18 files changed, 123 insertions(+), 76 deletions(-)
Title: Network Analysis and Visualization
Description: Collection of functions for fast manipulation, handling, and analysis of large-scale
networks based on family and social data. Functions are utility functions used to manipulate data
in three "formats": sparse adjacency matrices, pedigree trio family data, and pedigree family data.
When possible, the functions should be able to handle millions of data points quickly for use in combination
with data from large public national registers and databases.
Kenneth Lange (2003, ISBN:978-8181281135).
Author: Claus Thorn Ekstroem [aut, cre],
Bendix Carstensen [ctb]
Maintainer: Claus Thorn Ekstroem <ekstrom@sund.ku.dk>
Diff between networkR versions 0.1.4 dated 2025-09-21 and 0.1.5 dated 2025-09-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/RcppExports.R | 2 +- man/make_parental_chain.Rd | 2 +- src/cluster_parental_chains.cpp | 15 +++++++-------- 5 files changed, 17 insertions(+), 18 deletions(-)
Title: Plots for Compositional Data
Description: Provides a collection of easy-to-use functions for creating
visualizations of compositional data using 'ggplot2'. Includes support
for common plotting techniques in compositional data analysis.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.plot versions 0.1.9 dated 2025-04-20 and 0.1.10 dated 2025-09-23
DESCRIPTION | 15 +++--- MD5 | 16 +++--- NAMESPACE | 5 +- R/clr_ciplot.R | 13 +++-- R/coda.plot.R | 3 - R/ternary_diagram.R | 114 ++++++++++++++++++++++++++++++++++++++++--------- R/zzz.R | 34 +++++++++++++- man/clr_biplot.Rd | 7 ++- man/ternary_diagram.Rd | 3 - 9 files changed, 161 insertions(+), 49 deletions(-)
Title: An Interface to the 'Arctos' Database
Description: Performs requests to the 'Arctos' API to download data. Provides a
set of builder classes for performing complex requests, as well as a set of
simple functions for automating many common requests and workflows. More
information about 'Arctos' can be found in
Cicero et al. (2024) <doi:10.1371/journal.pone.0296478> or on their website
<https://arctosdb.org/>.
Author: Harlan R. Williams [aut, cre],
Marlon E. Cobos [aut],
Jocelyn P. Colella [aut],
Michelle S. Koo [aut],
Vijay Barve [aut]
Maintainer: Harlan R. Williams <harlanrhwilliams@gmail.com>
Diff between ArctosR versions 0.1.2 dated 2025-09-15 and 0.1.3 dated 2025-09-23
ArctosR-0.1.2/ArctosR/tests/testthat/save_csv_test.json |only ArctosR-0.1.2/ArctosR/tests/testthat/test.json |only ArctosR-0.1.3/ArctosR/DESCRIPTION | 8 ArctosR-0.1.3/ArctosR/MD5 | 31 ArctosR-0.1.3/ArctosR/NAMESPACE | 1 ArctosR-0.1.3/ArctosR/NEWS.md | 6 ArctosR-0.1.3/ArctosR/R/frontend.R | 35 ArctosR-0.1.3/ArctosR/R/utils.R | 2 ArctosR-0.1.3/ArctosR/build/vignette.rds |binary ArctosR-0.1.3/ArctosR/inst/doc/example.R | 194 +- ArctosR-0.1.3/ArctosR/inst/doc/example.Rmd | 113 + ArctosR-0.1.3/ArctosR/inst/doc/example.html | 962 ++++++------ ArctosR-0.1.3/ArctosR/inst/doc/overview.R | 252 +-- ArctosR-0.1.3/ArctosR/inst/doc/overview.html | 1195 ++++++++-------- ArctosR-0.1.3/ArctosR/man/get_request_url.Rd |only ArctosR-0.1.3/ArctosR/tests/testthat/test-frontend.R | 21 ArctosR-0.1.3/ArctosR/vignettes/example.Rmd | 113 + ArctosR-0.1.3/ArctosR/vignettes/figures |only 18 files changed, 1656 insertions(+), 1277 deletions(-)
Title: Matching Algorithms in R and C++
Description: Computes matching algorithms quickly using Rcpp.
Implements the Gale-Shapley Algorithm to compute the stable
matching for two-sided markets, such as the stable marriage
problem and the college-admissions problem. Implements Irving's
Algorithm for the stable roommate problem. Implements the top
trading cycle algorithm for the indivisible goods trading problem.
Author: Jan Tilly [aut, cre],
Nick Janetos [aut]
Maintainer: Jan Tilly <jantilly@gmail.com>
Diff between matchingR versions 1.3.3 dated 2021-05-25 and 2.0.0 dated 2025-09-23
matchingR-1.3.3/matchingR/R/deprecated.R |only matchingR-1.3.3/matchingR/man/matchingR-deprecated.Rd |only matchingR-1.3.3/matchingR/man/matchingR-package.Rd |only matchingR-2.0.0/matchingR/DESCRIPTION | 17 matchingR-2.0.0/matchingR/MD5 | 41 matchingR-2.0.0/matchingR/NEWS.md | 72 - matchingR-2.0.0/matchingR/R/RcppExports.R | 7 matchingR-2.0.0/matchingR/R/galeshapley.R | 2 matchingR-2.0.0/matchingR/R/matchingR.R | 2 matchingR-2.0.0/matchingR/README.md | 59 - matchingR-2.0.0/matchingR/build/vignette.rds |binary matchingR-2.0.0/matchingR/inst/doc/matchingR-intro.R | 14 matchingR-2.0.0/matchingR/inst/doc/matchingR-intro.Rmd | 36 matchingR-2.0.0/matchingR/inst/doc/matchingR-intro.html | 666 ++++++------ matchingR-2.0.0/matchingR/man/cpp_wrapper_galeshapley.Rd | 2 matchingR-2.0.0/matchingR/man/galeShapley.marriageMarket.Rd | 2 matchingR-2.0.0/matchingR/src/Makevars | 1 matchingR-2.0.0/matchingR/src/galeshapley.cpp | 58 - matchingR-2.0.0/matchingR/src/roommate.cpp | 2 matchingR-2.0.0/matchingR/src/toptradingcycle.cpp | 2 matchingR-2.0.0/matchingR/tests/testthat/test_galeshapley.R | 6 matchingR-2.0.0/matchingR/vignettes/bibliography.bib | 2 matchingR-2.0.0/matchingR/vignettes/matchingR-intro.Rmd | 36 23 files changed, 577 insertions(+), 450 deletions(-)
Title: Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by
plots in scientific journals, data visualization libraries,
science fiction movies, and TV shows.
Author: Nan Xiao [aut, cre, cph] ,
Joshua Cook [ctb],
Clara Jegousse [ctb],
Hui Chen [ctb],
Miaozhu Li [ctb],
iTerm2-Color-Schemes contributors [ctb, cph] ,
Winston Chang [ctb, cph]
Maintainer: Nan Xiao <me@nanx.me>
Diff between ggsci versions 3.2.0 dated 2024-06-17 and 4.0.0 dated 2025-09-23
ggsci-3.2.0/ggsci/inst/logo |only ggsci-4.0.0/ggsci/DESCRIPTION | 26 - ggsci-4.0.0/ggsci/MD5 | 182 +++++----- ggsci-4.0.0/ggsci/NAMESPACE | 16 ggsci-4.0.0/ggsci/NEWS.md | 26 + ggsci-4.0.0/ggsci/R/discrete-aaas.R | 21 - ggsci-4.0.0/ggsci/R/discrete-atlassian.R |only ggsci-4.0.0/ggsci/R/discrete-bmj.R | 21 - ggsci-4.0.0/ggsci/R/discrete-cosmic.R | 21 - ggsci-4.0.0/ggsci/R/discrete-d3.R | 19 - ggsci-4.0.0/ggsci/R/discrete-flatui.R | 19 - ggsci-4.0.0/ggsci/R/discrete-frontiers.R | 30 - ggsci-4.0.0/ggsci/R/discrete-futurama.R | 21 - ggsci-4.0.0/ggsci/R/discrete-igv.R | 23 - ggsci-4.0.0/ggsci/R/discrete-iterm.R |only ggsci-4.0.0/ggsci/R/discrete-jama.R | 21 - ggsci-4.0.0/ggsci/R/discrete-jco.R | 21 - ggsci-4.0.0/ggsci/R/discrete-lancet.R | 21 - ggsci-4.0.0/ggsci/R/discrete-locuszoom.R | 21 - ggsci-4.0.0/ggsci/R/discrete-nejm.R | 21 - ggsci-4.0.0/ggsci/R/discrete-npg.R | 21 - ggsci-4.0.0/ggsci/R/discrete-observable.R | 21 - ggsci-4.0.0/ggsci/R/discrete-primer.R |only ggsci-4.0.0/ggsci/R/discrete-rickandmorty.R | 21 - ggsci-4.0.0/ggsci/R/discrete-simpsons.R | 21 - ggsci-4.0.0/ggsci/R/discrete-startrek.R | 21 - ggsci-4.0.0/ggsci/R/discrete-tron.R | 30 - ggsci-4.0.0/ggsci/R/discrete-uchicago.R | 19 - ggsci-4.0.0/ggsci/R/discrete-ucscgb.R | 21 - ggsci-4.0.0/ggsci/R/examples.R |only ggsci-4.0.0/ggsci/R/palettes-iterm.R |only ggsci-4.0.0/ggsci/R/palettes.R | 33 + ggsci-4.0.0/ggsci/R/staticimports.R |only ggsci-4.0.0/ggsci/R/utils.R | 75 ---- ggsci-4.0.0/ggsci/README.md | 12 ggsci-4.0.0/ggsci/build/vignette.rds |binary ggsci-4.0.0/ggsci/inst/WORDLIST | 7 ggsci-4.0.0/ggsci/inst/doc/ggsci.R | 36 + ggsci-4.0.0/ggsci/inst/doc/ggsci.Rmd | 66 ++- ggsci-4.0.0/ggsci/inst/doc/ggsci.html | 156 +++++--- ggsci-4.0.0/ggsci/man/example_plots.Rd |only ggsci-4.0.0/ggsci/man/figures/README-ggsci-aaas-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-atlassian-1.png |only ggsci-4.0.0/ggsci/man/figures/README-ggsci-bmj-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-bs5-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-cosmic-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-cosmic-2.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-cosmic-3.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-d3-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-flatui-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-frontiers-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-futurama-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-igv-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-iterm-1.png |only ggsci-4.0.0/ggsci/man/figures/README-ggsci-jama-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-jco-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-lancet-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-locuszoom-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-material-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-nejm-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-npg-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-observable-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-primer-1.png |only ggsci-4.0.0/ggsci/man/figures/README-ggsci-rickandmorty-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-simpsons-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-startrek-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-tron-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-tw3-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-uchicago-1.png |binary ggsci-4.0.0/ggsci/man/figures/README-ggsci-ucscgb-1.png |binary ggsci-4.0.0/ggsci/man/figures/logo.png |binary ggsci-4.0.0/ggsci/man/ggsci-package.Rd | 4 ggsci-4.0.0/ggsci/man/iterm_palettes.Rd |only ggsci-4.0.0/ggsci/man/pal_atlassian.Rd |only ggsci-4.0.0/ggsci/man/pal_iterm.Rd |only ggsci-4.0.0/ggsci/man/pal_primer.Rd |only ggsci-4.0.0/ggsci/man/scale_aaas.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_atlassian.Rd |only ggsci-4.0.0/ggsci/man/scale_bmj.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_cosmic.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_d3.Rd | 19 - ggsci-4.0.0/ggsci/man/scale_flatui.Rd | 19 - ggsci-4.0.0/ggsci/man/scale_frontiers.Rd | 30 - ggsci-4.0.0/ggsci/man/scale_futurama.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_igv.Rd | 23 - ggsci-4.0.0/ggsci/man/scale_iterm.Rd |only ggsci-4.0.0/ggsci/man/scale_jama.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_jco.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_lancet.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_locuszoom.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_nejm.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_npg.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_observable.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_primer.Rd |only ggsci-4.0.0/ggsci/man/scale_rickandmorty.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_simpsons.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_startrek.Rd | 21 - ggsci-4.0.0/ggsci/man/scale_tron.Rd | 30 - ggsci-4.0.0/ggsci/man/scale_uchicago.Rd | 19 - ggsci-4.0.0/ggsci/man/scale_ucscgb.Rd | 21 - ggsci-4.0.0/ggsci/vignettes/ggsci.Rmd | 66 ++- 101 files changed, 545 insertions(+), 1070 deletions(-)