Title: Joint Estimation in Linear Quantile Regression
Description: Joint estimation of quantile specific intercept and slope parameters in a linear regression setting.
Author: Surya Tokdar [aut, cre],
Erika Cunningham [aut]
Maintainer: Surya Tokdar <surya.tokdar@duke.edu>
Diff between qrjoint versions 2.0-9 dated 2023-04-05 and 2.0-11 dated 2025-09-24
DESCRIPTION | 21 +++++++++++++++------ MD5 | 16 ++++++++-------- R/qrjoint.R | 6 +++--- man/qde.Rd | 4 ++-- man/qrjoint-internal.Rd | 2 +- man/qrjoint.Rd | 4 ++-- man/summary.qde.Rd | 2 +- man/summary.qrjoint.Rd | 2 +- src/qrjoint.c | 2 +- 9 files changed, 34 insertions(+), 25 deletions(-)
Title: Estimating Peer Effects Using Partial Network Data
Description: Implements IV-estimator and Bayesian estimator for linear-in-means Spatial Autoregressive (SAR) model (see LeSage, 1997 <doi:10.1177/016001769702000107>; Lee, 2004 <doi:10.1111/j.1468-0262.2004.00558.x>; Bramoullé et al., 2009 <doi:10.1016/j.jeconom.2008.12.021>), while assuming that only a partial information about the network structure is available. Examples are when the adjacency matrix is not fully observed or when only consistent estimation of the network formation model is available (see Boucher and Houndetoungan <doi:10.48550/arXiv.2509.08145>).
Author: Vincent Boucher [aut],
Aristide Houndetoungan [cre, aut]
Maintainer: Aristide Houndetoungan <ahoundetoungan@ecn.ulaval.ca>
Diff between PartialNetwork versions 1.1.0 dated 2025-05-08 and 1.1.1 dated 2025-09-24
PartialNetwork-1.1.0/PartialNetwork/README.md |only PartialNetwork-1.1.1/PartialNetwork/DESCRIPTION | 14 PartialNetwork-1.1.1/PartialNetwork/MD5 | 31 PartialNetwork-1.1.1/PartialNetwork/NEWS.md | 5 PartialNetwork-1.1.1/PartialNetwork/R/PartialNetwork.R | 4 PartialNetwork-1.1.1/PartialNetwork/R/simNetwork.R | 2 PartialNetwork-1.1.1/PartialNetwork/build/partial.rdb |binary PartialNetwork-1.1.1/PartialNetwork/build/vignette.rds |binary PartialNetwork-1.1.1/PartialNetwork/inst/doc/PartialNetwork_vignette.R | 72 - PartialNetwork-1.1.1/PartialNetwork/inst/doc/PartialNetwork_vignette.Rmd | 462 +++++----- PartialNetwork-1.1.1/PartialNetwork/inst/doc/PartialNetwork_vignette.pdf |binary PartialNetwork-1.1.1/PartialNetwork/man/PartialNetwork-package.Rd | 6 PartialNetwork-1.1.1/PartialNetwork/man/sim.network.Rd | 2 PartialNetwork-1.1.1/PartialNetwork/src/Makevars | 14 PartialNetwork-1.1.1/PartialNetwork/src/Makevars.win | 11 PartialNetwork-1.1.1/PartialNetwork/src/mlSAR.cpp | 2 PartialNetwork-1.1.1/PartialNetwork/vignettes/PartialNetwork_vignette.Rmd | 462 +++++----- 17 files changed, 536 insertions(+), 551 deletions(-)
More information about PartialNetwork at CRAN
Permanent link
Title: Facilitate Analysis of Proteomic Data from Olink
Description: A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
Author: Kathleen Nevola [aut, cre] ,
Marianne Sandin [aut] ,
Jamey Guess [aut] ,
Simon Forsberg [aut] ,
Christoffer Cambronero [aut] ,
Pascal Pucholt [aut] ,
Boxi Zhang [aut] ,
Masoumeh Sheikhi [aut] ,
Klev Diamanti [aut] ,
Amrita Kar [aut] ,
Lei Conze [aut] [...truncated...]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Diff between OlinkAnalyze versions 4.3.1 dated 2025-07-31 and 4.3.2 dated 2025-09-24
OlinkAnalyze-4.3.1/OlinkAnalyze/tests/testthat/Rplots.pdf |only OlinkAnalyze-4.3.1/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-oid40770.svg |only OlinkAnalyze-4.3.1/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-oid40835.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/DESCRIPTION | 16 OlinkAnalyze-4.3.2/OlinkAnalyze/MD5 | 101 - OlinkAnalyze-4.3.2/OlinkAnalyze/NEWS.md | 7 OlinkAnalyze-4.3.2/OlinkAnalyze/R/Olink_heatmap.R | 51 OlinkAnalyze-4.3.2/OlinkAnalyze/R/Olink_theme.R | 117 + OlinkAnalyze-4.3.2/OlinkAnalyze/R/linear_mixed_model.R | 2 OlinkAnalyze-4.3.2/OlinkAnalyze/R/olink_bridgeability_plot.R | 606 +++--- OlinkAnalyze-4.3.2/OlinkAnalyze/R/olink_normalization.R | 4 OlinkAnalyze-4.3.2/OlinkAnalyze/R/utils.R |only OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/LOD.html | 2 OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/OutlierExclusion.html | 4 OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/Vignett.html | 4 OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/bridging_crossproduct.html | 2 OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/bridging_introduction.html | 108 - OlinkAnalyze-4.3.2/OlinkAnalyze/inst/doc/plate_randomizer.html | 14 OlinkAnalyze-4.3.2/OlinkAnalyze/man/is_testing.Rd |only OlinkAnalyze-4.3.2/OlinkAnalyze/man/set_plot_theme.Rd | 4 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_boxplot/boxplot-site-10prots.svg | 733 ++++--- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_boxplot/boxplot-site-2prots.svg | 311 +-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_boxplot/boxplot-time-and-site.svg | 959 +++++----- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_boxplot/boxplot-time-with-coloroption.svg | 550 +++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_boxplot/boxplot-time.svg | 550 +++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Olink_plate_randomizer/randomized-data.svg | 669 +++--- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Read_NPX_data.md | 24 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Volcano_plot/volcano-plot-with-coloroption.svg | 527 +++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/Volcano_plot/volcano-plot.svg | 512 +++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/dist_plot/distribution-plot-col-by-treatment.svg | 488 +++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/dist_plot/distribution-plot.svg | 450 ++-- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/linear_mixed_model/lmer-plot-more-prots-than-space.svg | 191 + OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/linear_mixed_model/lmer-plot.svg | 762 ++++--- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/npxProcessing.md | 130 - OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-counts-oid40770.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-counts-oid40835.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-iqr-oid40770.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-iqr-oid40835.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-ks-oid40770.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-ks-oid40835.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-r2-oid40770.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_bridgeability_plot/bridgeable-plot-r2-oid40835.svg |only OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_qc_plot/qc-plot-with-coloroption.svg | 884 +++++---- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/_snaps/olink_qc_plot/qc-plot.svg | 869 ++++----- OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/data/refResults.RData |binary OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-Olink_boxplot.R | 21 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-Olink_heatmap.R | 9 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-Olink_plate_randomizer.R | 12 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-Volcano_plot.R | 2 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-dist_plot.R | 13 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-linear_mixed_model.R | 10 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-olink_Pathway_Heatmap.R | 3 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-olink_Pathway_Visualization.R | 2 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-olink_bridgeability_plot.R | 239 ++ OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-olink_normalization.R | 99 + OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-olink_qc_plot.R | 13 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test-pca_plot.R | 10 OlinkAnalyze-4.3.2/OlinkAnalyze/tests/testthat/test_Olink_wilcox.R | 17 58 files changed, 5948 insertions(+), 4153 deletions(-)
Title: Single Cell Oriented Reconstruction of PANDA Individual
Optimized Networks
Description: Constructs gene regulatory networks from single-cell gene expression data using the PANDA (Passing Attributes between Networks for Data Assimilation) algorithm.
Author: Daniel Osorio [aut, cre] ,
Marieke L. Kuijjer [aut]
Maintainer: Daniel Osorio <daniecos@uio.no>
Diff between SCORPION versions 1.1.0 dated 2025-08-25 and 1.2.0 dated 2025-09-24
DESCRIPTION | 6 - MD5 | 24 ++-- R/buildKNN.R | 24 ++-- R/buildKNND.R | 47 +++++---- R/buildNN2.R | 11 +- R/makeSuperCells.R | 63 ++++++------ R/normalizeNetwork.R | 53 +++++----- R/pcNet.R | 18 +-- R/prepResult.R | 12 +- R/runPANDA.R | 238 ++++++++++++++++++++++++------------------------- R/spreadNet.R | 7 - R/tanimotoSimilarity.R | 28 ++--- R/updateDiagonal.R | 8 - 13 files changed, 274 insertions(+), 265 deletions(-)
Title: Analyze High-Dimensional High-Throughput Dataset and Quality
Control Single-Cell RNA-Seq
Description: The advent of genomic technologies has enabled the generation of two-dimensional or even multi-dimensional high-throughput data, e.g., monitoring multiple changes in gene expression in genome-wide siRNA screens across many different cell types (E Robert McDonald 3rd (2017) <doi: 10.1016/j.cell.2017.07.005> and Tsherniak A (2017) <doi: 10.1016/j.cell.2017.06.010>) or single cell transcriptomics under different experimental conditions. We found that simple computational methods based on a single statistical criterion is no longer adequate for analyzing such multi-dimensional data. We herein introduce 'ZetaSuite', a statistical package initially designed to score hits from two-dimensional RNAi screens.We also illustrate a unique utility of 'ZetaSuite' in analyzing single cell transcriptomics to differentiate rare cells from damaged ones (Vento-Tormo R (2018) <doi: 10.1038/s41586-018-0698-6>). In 'ZetaSuite', we have the following steps: QC of input datasets, normalizati [...truncated...]
Author: Yajing Hao [aut] ,
Shuyang Zhang [ctb] ,
Junhui Li [cre] ,
Guofeng Zhao [ctb],
Xiang-Dong Fu [cph, fnd]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between ZetaSuite versions 1.0.1 dated 2022-05-24 and 1.0.2 dated 2025-09-24
DESCRIPTION | 29 LICENSE |only MD5 | 50 - NAMESPACE | 73 ++ R/EventCoverage.R | 59 + R/FDRcutoff.R | 64 + R/QC.R | 45 - R/SVM.R | 41 - R/Zeta.R | 35 - R/ZetaSuitSC.R | 36 - R/ZetaSuiteApp.R |only R/Zscore.R | 27 README.md |only build/vignette.rds |binary inst/doc/ZetaSuite.R | 250 +++++-- inst/doc/ZetaSuite.Rmd | 528 +++++++++++----- inst/doc/ZetaSuite.html | 1549 ++++++++++++++++++++++++++++++++---------------- inst/shiny |only man/EventCoverage.Rd | 51 + man/FDRcutoff.Rd | 56 + man/QC.Rd | 37 - man/SVM.Rd | 38 - man/Zeta.Rd | 34 - man/ZetaSuitSC.Rd | 30 man/ZetaSuiteApp.Rd |only man/Zscore.Rd | 28 vignettes/ZetaSuite.Rmd | 528 +++++++++++----- 27 files changed, 2502 insertions(+), 1086 deletions(-)
Title: Semiparametric Bayesian Density Estimation
Description: Offers Bayesian semiparametric density estimation
and tail-index estimation for heavy tailed data, by
using a parametric, tail-respecting transformation
of the data to the unit interval and then modeling
the transformed data with a purely nonparametric
logistic Gaussian process density prior. Based on
Tokdar et al. (2022) <doi:10.1080/01621459.2022.2104727>.
Author: Surya Tokdar [aut, cre]
Maintainer: Surya Tokdar <surya.tokdar@duke.edu>
Diff between sbde versions 1.0-1 dated 2024-02-16 and 1.0-2 dated 2025-09-24
DESCRIPTION | 16 ++++++++++------ MD5 | 4 ++-- man/summary.sbde.Rd | 2 +- 3 files changed, 13 insertions(+), 9 deletions(-)
Title: Spectral Transmittance and Spectral Reflectance Data
Description: Spectral 'transmittance' data for frequently used filters and
similar materials. Plastic sheets and films; photography filters;
theatrical gels; machine-vision filters; various types of window glass;
optical glass and some laboratory plastics and glassware. Spectral
reflectance data for frequently encountered materials. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
T. Matthew Robson [ctb] ,
Ricardo Hernandez [ctb] ,
Tania de la Rosa [ctb] ,
Riitta Tegelberg [ctb] ,
Andreas Albert [ctb] ,
SCHOTT AG [ctb] ,
Midwest Optical Systems, Inc. [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyFilters versions 0.6.0 dated 2024-02-27 and 0.6.1 dated 2025-09-24
DESCRIPTION | 19 - MD5 | 68 ++-- NEWS.md | 9 R/bpi-visqueen.r | 2 R/filters-mspct.r | 60 +++ R/glass-windows.r | 4 R/photography-filters.r | 4 R/refractive-index-mspct.r | 2 R/schott.r | 2 R/screens-nets-mspct.R | 6 R/screens_nets.R | 2 README.md | 40 +- build/partial.rdb |binary build/vignette.rds |binary data/filters-UVIVIF-mspct.rda |only data/filters-mspct.rda |binary data/materials-mspct.rda |binary data/metals-mspct.rda |binary data/refractive-index.rda |binary data/screens-nets-mspct.rda |binary inst/doc/r4p-introduction.Rmd | 158 +++++----- inst/doc/r4p-introduction.html | 159 +++++----- inst/doc/user-guide.R | 10 inst/doc/user-guide.Rmd | 14 inst/doc/user-guide.html | 618 +++++++++++++++++++++-------------------- man/bpi_visqueen_filters.Rd | 2 man/filters.mspct.Rd | 17 - man/filters_UVIVIF.mspct.Rd |only man/glass_windows.Rd | 5 man/photography_filters.Rd | 6 man/refractive_index.mspct.Rd | 2 man/schott_filters.Rd | 2 man/screens_nets.mspct.Rd | 6 man/screens_nets_suppliers.Rd | 2 vignettes/r4p-introduction.Rmd | 158 +++++----- vignettes/user-guide.Rmd | 14 36 files changed, 778 insertions(+), 613 deletions(-)
More information about photobiologyFilters at CRAN
Permanent link
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Ben Wilson [aut, cre],
Matei Zaharia [aut],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Ben Wilson <benjamin.wilson@databricks.com>
Diff between mlflow versions 3.3.2 dated 2025-09-04 and 3.4.0 dated 2025-09-24
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Tree Guided Machine Learning for Personalized Prediction and
Precision Diagnostics
Description: Generalization of the classification and regression tree (CART) model that partitions subjects into terminal nodes and tailors machine learning model to each terminal node.
Author: Yunro Chung [aut, cre]
Maintainer: Yunro Chung <yunro.chung@asu.edu>
Diff between tgml versions 0.1.0 dated 2025-05-02 and 0.2.0 dated 2025-09-24
tgml-0.1.0/tgml/R/03a.rootML_auc.R |only tgml-0.1.0/tgml/R/04a.growTree_auc.R |only tgml-0.1.0/tgml/R/05a.combML_auc.R |only tgml-0.2.0/tgml/DESCRIPTION | 10 +++++----- tgml-0.2.0/tgml/MD5 | 9 +++------ tgml-0.2.0/tgml/R/tgml.R | 31 +++++++++++-------------------- tgml-0.2.0/tgml/man/tgml.Rd | 12 ++++++------ 7 files changed, 25 insertions(+), 37 deletions(-)
Title: Fitting Shared Atoms Nested Models via Markov Chains Monte Carlo
Description: Estimate Bayesian nested mixture models via Markov Chain Monte Carlo methods. Specifically, the package implements the common atoms model (Denti et al., 2023), and hybrid finite-infinite models.
All models use Gaussian mixtures with a normal-inverse-gamma prior distribution on the parameters. Additional functions are provided to help analyzing the results of the fitting procedure.
References:
Denti, Camerlenghi, Guindani, Mira (2023) <doi:10.1080/01621459.2021.1933499>,
D’Angelo, Denti (2024) <doi:10.1214/24-BA1458>.
Author: Francesco Denti [aut, cre] ,
Laura D'Angelo [aut, cph]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between SANple versions 0.1.1 dated 2024-06-02 and 0.2.0 dated 2025-09-24
SANple-0.1.1/SANple/R/mcmc_CAM_burn.R |only SANple-0.1.1/SANple/R/mcmc_fSAN_burn.R |only SANple-0.1.1/SANple/R/mcmc_fSAN_sparse_burn.R |only SANple-0.1.1/SANple/R/mcmc_fiSAN_burn.R |only SANple-0.1.1/SANple/R/mcmc_fiSAN_sparse_burn.R |only SANple-0.1.1/SANple/man/sample_fSAN_sparsemix.Rd |only SANple-0.1.1/SANple/man/sample_fiSAN_sparsemix.Rd |only SANple-0.1.1/SANple/src/common_functions.cpp |only SANple-0.1.1/SANple/src/common_functions.h |only SANple-0.1.1/SANple/src/funs_cam.cpp |only SANple-0.1.1/SANple/src/funs_cam.h |only SANple-0.1.1/SANple/src/funs_fcam.cpp |only SANple-0.1.1/SANple/src/funs_fcam.h |only SANple-0.1.1/SANple/src/funs_ficam.cpp |only SANple-0.1.1/SANple/src/funs_ficam.h |only SANple-0.1.1/SANple/src/funs_overcam.cpp |only SANple-0.1.1/SANple/src/funs_overcam.h |only SANple-0.1.1/SANple/src/funs_san.cpp |only SANple-0.1.1/SANple/src/funs_san.h |only SANple-0.1.1/SANple/src/main_cam_burn.cpp |only SANple-0.1.1/SANple/src/main_fcam_burn.cpp |only SANple-0.1.1/SANple/src/main_ficam_burn.cpp |only SANple-0.1.1/SANple/src/main_overcam_burn.cpp |only SANple-0.1.1/SANple/src/main_overficam_burn.cpp |only SANple-0.2.0/SANple/DESCRIPTION | 22 ++-- SANple-0.2.0/SANple/MD5 | 75 +++++-------- SANple-0.2.0/SANple/NAMESPACE | 3 SANple-0.2.0/SANple/NEWS.md | 6 + SANple-0.2.0/SANple/R/RcppExports.R | 20 +-- SANple-0.2.0/SANple/R/estimate_clusters.R | 5 SANple-0.2.0/SANple/R/mcmc_CAM.R |only SANple-0.2.0/SANple/R/mcmc_fSAN.R |only SANple-0.2.0/SANple/R/mcmc_fiSAN.R |only SANple-0.2.0/SANple/R/plot.R | 4 SANple-0.2.0/SANple/R/print.R | 5 SANple-0.2.0/SANple/R/traceplot.R | 3 SANple-0.2.0/SANple/README.md | 43 ++------ SANple-0.2.0/SANple/build/partial.rdb |binary SANple-0.2.0/SANple/man/SANple-package.Rd | 2 SANple-0.2.0/SANple/man/estimate_clusters.Rd | 4 SANple-0.2.0/SANple/man/figures/sanple_draft.png |only SANple-0.2.0/SANple/man/plot.SANmcmc.Rd | 4 SANple-0.2.0/SANple/man/print.SANmcmc.Rd | 4 SANple-0.2.0/SANple/man/sample_CAM.Rd | 2 SANple-0.2.0/SANple/man/sample_fSAN.Rd | 70 ++++--------- SANple-0.2.0/SANple/man/sample_fiSAN.Rd | 53 ++++----- SANple-0.2.0/SANple/man/traceplot.Rd | 2 SANple-0.2.0/SANple/src/AUX_FUNS.cpp |only SANple-0.2.0/SANple/src/AUX_FUNS.h |only SANple-0.2.0/SANple/src/CAM_FUNS.cpp |only SANple-0.2.0/SANple/src/CAM_FUNS.h |only SANple-0.2.0/SANple/src/CAM_MAIN.cpp |only SANple-0.2.0/SANple/src/FISAN_MAIN.cpp |only SANple-0.2.0/SANple/src/FSAN_MAIN.cpp |only SANple-0.2.0/SANple/src/RcppExports.cpp | 118 ++-------------------- SANple-0.2.0/SANple/src/SAN_FUNS.cpp |only SANple-0.2.0/SANple/src/SAN_FUNS.h |only 57 files changed, 150 insertions(+), 295 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.30 dated 2025-02-02 and 0.4.32 dated 2025-09-24
DESCRIPTION | 36 +- MD5 | 39 +- NAMESPACE | 1 NEWS.md | 10 R/read-cid-spectravue-csv.r | 49 -- R/read-oojaz-file.r | 61 ++- R/read-ooov-file.r |only R/read-ooss-file.r | 89 +++-- R/read-tuv-file.r | 5 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/user-guide.R | 26 - inst/doc/user-guide.Rmd | 33 +- inst/doc/user-guide.html | 672 ++++++++++++++++++++--------------------- inst/extdata/spectrum.OVIrrad |only man/read_cid_spectravue_csv.Rd | 54 +-- man/read_oo_jazirrad.Rd | 52 ++- man/read_oo_ovirrad.Rd |only man/read_oo_ssirrad.Rd | 59 ++- tests/testthat/test-oo.R | 4 vignettes/user-guide.Rmd | 33 +- 22 files changed, 650 insertions(+), 575 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Fitting Shared Atoms Nested Models via MCMC or Variational Bayes
Description: An efficient tool for fitting nested mixture models based on a shared set of
atoms via Markov Chain Monte Carlo and variational inference algorithms.
Specifically, the package implements the common atoms model (Denti et al., 2023),
its finite version (similar to D'Angelo et al., 2023), and a hybrid finite-infinite
model (D'Angelo and Denti, 2024). All models implement univariate nested mixtures
with Gaussian kernels equipped with a normal-inverse gamma prior distribution
on the parameters. Additional functions are provided to help analyze the
results of the fitting procedure.
References:
Denti, Camerlenghi, Guindani, Mira (2023) <doi:10.1080/01621459.2021.1933499>,
D’Angelo, Canale, Yu, Guindani (2023) <doi:10.1111/biom.13626>,
D’Angelo, Denti (2024) <doi:10.1214/24-BA1458>.
Author: Francesco Denti [aut, cre, cph] ,
Laura D'Angelo [aut]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between sanba versions 0.0.2 dated 2025-07-31 and 0.0.3 dated 2025-09-24
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 4 + README.md | 6 +- build/partial.rdb |binary man/figures/README-example1-1.png |binary man/figures/README-example1-2.png |binary man/figures/README-example2-1.png |binary man/figures/README-example2-2.png |binary src/CAM_FUNS.cpp | 102 +++++++++++++++++++------------------- 10 files changed, 71 insertions(+), 67 deletions(-)
Title: Likelihood-Based Intrinsic Dimension Estimators
Description: Provides functions to estimate the intrinsic dimension of a dataset
via likelihood-based approaches. Specifically, the package implements the
'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model.
In addition, the first reference contains an extended vignette on the usage of
the 'TWO-NN' and 'Hidalgo' models. References:
Denti (2023, <doi:10.18637/jss.v106.i09>);
Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>);
Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>);
Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>);
Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>).
Author: Francesco Denti [aut, cre, cph] ,
Andrea Gilardi [aut]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between intRinsic versions 1.1.0 dated 2024-09-12 and 1.1.1 dated 2025-09-24
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NEWS.md | 5 +++++ README.md | 3 +-- build/partial.rdb |binary src/A_AUX.cpp | 2 +- src/B_FULLCOND.cpp | 2 +- 7 files changed, 21 insertions(+), 17 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.16 dated 2025-06-24 and 0.3.17 dated 2025-09-24
DESCRIPTION | 10 MD5 | 93 ++--- NAMESPACE | 360 +++++++++++----------- NEWS.md | 35 ++ R/autoplot-calibration-spct.R | 127 +++++-- R/autoplot-cps-spct.r | 141 ++++++-- R/autoplot-filter-spct.r | 468 +++++++++++++++++++---------- R/autoplot-generic-spct.R | 24 + R/autoplot-raw-spct.r | 145 ++++++-- R/autoplot-response-spct.r | 213 +++++++++---- R/autoplot-source-spct.r | 247 ++++++++++----- R/autoplot-waveband.R | 99 +++--- R/decoration.R | 32 + R/ggplot-methods.R | 428 ++++++++++++++++++-------- R/stat-label-peaks.R | 10 R/stat-peaks.R | 62 +-- R/stat-wb-column.R | 2 R/stat-wb-label.R | 18 + R/stat-wl-strip.R | 46 ++ R/utils-internal.R | 50 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/userguide-0-r4p-introduction.Rmd | 4 inst/doc/userguide-0-r4p-introduction.html | 12 inst/doc/userguide1-grammar.html | 35 +- inst/doc/userguide2-autoplot-methods.html | 97 +++--- man/apply_normalization.Rd | 36 +- man/autoplot.calibration_spct.Rd | 39 +- man/autoplot.cps_spct.Rd | 39 +- man/autoplot.filter_spct.Rd | 39 +- man/autoplot.generic_spct.Rd | 3 man/autoplot.object_spct.Rd | 56 +-- man/autoplot.raw_spct.Rd | 39 +- man/autoplot.reflector_spct.Rd | 39 +- man/autoplot.response_spct.Rd | 44 +- man/autoplot.source_spct.Rd | 47 +- man/autoplot.waveband.Rd | 47 +- man/figures/README-example0-1.png |binary man/figures/README-example1-1.png |binary man/ggplot.Rd | 180 ++++++++--- man/normalization_label.Rd |only man/set_annotations_default.Rd | 3 man/stat_label_peaks.Rd | 30 - man/stat_peaks.Rd | 75 ++-- man/stat_wb_column.Rd | 2 man/stat_wb_label.Rd | 4 man/stat_wl_strip.Rd | 10 vignettes/userguide-0-r4p-introduction.Rmd | 4 48 files changed, 2249 insertions(+), 1245 deletions(-)
Title: Data Science for Wind Energy
Description: Data science methods used in wind energy applications.
Current functionalities include creating a multi-dimensional power curve model,
performing power curve function comparison, covariate matching, and energy decomposition.
Relevant works for the developed functions are:
funGP() - Prakash et al. (2022) <doi:10.1080/00401706.2021.1905073>,
AMK() - Lee et al. (2015) <doi:10.1080/01621459.2014.977385>,
tempGP() - Prakash et al. (2022) <doi:10.1080/00401706.2022.2069158>,
ComparePCurve() - Ding et al. (2021) <doi:10.1016/j.renene.2021.02.136>,
deltaEnergy() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
syncSize() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
imptPower() - Latiffianti et al. (2022) <doi:10.1002/we.2722>,
All other functions - Ding (2019, ISBN:9780429956508).
Author: Nitesh Kumar [aut],
Abhinav Prakash [aut],
Yu Ding [aut, cre],
Effi Latiffianti [ctb, cph],
Ahmadreza Chokhachian [ctb, cph]
Maintainer: Yu Ding <yuding2007@gmail.com>
Diff between DSWE versions 1.8.2 dated 2024-02-17 and 1.8.3 dated 2025-09-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/MatchInternal2.cpp | 5 +++-- 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Dynamic Factor Models
Description: Efficient estimation of Dynamic Factor Models using the Expectation Maximization (EM) algorithm
or Two-Step (2S) estimation, supporting datasets with missing data. Factors are assumed to follow a stationary VAR
process of order p. The estimation options follow advances in the econometric literature: either running the Kalman
Filter and Smoother once with initial values from PCA - 2S estimation as in Doz, Giannone and Reichlin (2011)
<doi:10.1016/j.jeconom.2011.02.012> - or via iterated Kalman Filtering and Smoothing until EM convergence - following
Doz, Giannone and Reichlin (2012) <doi:10.1162/REST_a_00225> - or using the adapted EM algorithm of Banbura and
Modugno (2014) <doi:10.1002/jae.2306>, allowing arbitrary patterns of missing data. The implementation makes heavy
use of the 'Armadillo' 'C++' library and the 'collapse' package, providing for particularly speedy estimation.
A comprehensive set of methods supports interpretation and visualization of the model as [...truncated...]
Author: Sebastian Krantz [aut, cre],
Rytis Bagdziunas [aut],
Santtu Tikka [rev],
Eli Holmes [rev]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between dfms versions 0.3.1 dated 2025-08-20 and 0.3.2 dated 2025-09-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/dynamic_factor_models.pdf |binary inst/doc/introduction.html | 31 ++++++++++++------------------- man/dfms-package.Rd | 24 ++++++++++++++++++++++++ src/KalmanFiltering.cpp | 4 ++-- 7 files changed, 52 insertions(+), 31 deletions(-)
Title: Generalized Pairwise Comparisons
Description: Implementation of the Generalized Pairwise Comparisons (GPC) as defined in Buyse (2010) <doi:10.1002/sim.3923> for complete observations, and extended in Peron (2018) <doi:10.1177/0962280216658320> to deal with right-censoring. GPC compare two groups of observations (intervention vs. control group) regarding several prioritized endpoints to estimate the probability that a random observation drawn from one group performs better/worse/equivalently than a random observation drawn from the other group. Summary statistics such as the net treatment benefit, win ratio, or win odds are then deduced from these probabilities. Confidence intervals and p-values are obtained based on asymptotic results (Ozenne 2021 <doi:10.1177/09622802211037067>), non-parametric bootstrap, or permutations. The software enables the use of thresholds of minimal importance difference, stratification, non-prioritized endpoints (O Brien test), and can handle right-censoring and competing-risks.
Author: Brice Ozenne [aut, cre] ,
Eva Cantagallo [aut],
William Anderson [aut],
Julien Peron [ctb],
Johan Verbeeck [ctb]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between BuyseTest versions 3.3.3 dated 2025-07-24 and 3.3.4 dated 2025-09-24
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BuyseTest-3.3.4/BuyseTest/R/S4-BuyseTest.vcov.R | 212 BuyseTest-3.3.4/BuyseTest/R/as.data.table.performance.R | 282 - BuyseTest-3.3.4/BuyseTest/R/auc.R | 792 +-- BuyseTest-3.3.4/BuyseTest/R/autoplot.S4BuyseTest.R | 342 - BuyseTest-3.3.4/BuyseTest/R/brier.R | 604 +- BuyseTest-3.3.4/BuyseTest/R/constStrata.R | 178 BuyseTest-3.3.4/BuyseTest/R/discreteRoot.R | 580 +- BuyseTest-3.3.4/BuyseTest/R/doc-data.R | 246 - BuyseTest-3.3.4/BuyseTest/R/efronlim.R | 242 BuyseTest-3.3.4/BuyseTest/R/iid.S3sensitivity.R | 50 BuyseTest-3.3.4/BuyseTest/R/iid.prodlim.R | 404 - BuyseTest-3.3.4/BuyseTest/R/mover.R | 242 BuyseTest-3.3.4/BuyseTest/R/normexp.R | 424 - BuyseTest-3.3.4/BuyseTest/R/performance.R | 2424 +++++----- BuyseTest-3.3.4/BuyseTest/R/performanceResample.R | 572 +- BuyseTest-3.3.4/BuyseTest/R/plot.S3sensitivity.R | 358 - BuyseTest-3.3.4/BuyseTest/R/powerBuyseTest.R | 1628 +++--- BuyseTest-3.3.4/BuyseTest/R/predict.logit.R | 564 +- BuyseTest-3.3.4/BuyseTest/R/rbind.performanceResample.R | 226 BuyseTest-3.3.4/BuyseTest/R/sim.simBuyseTest.R | 66 BuyseTest-3.3.4/BuyseTest/R/simBuyseTest.R | 1470 +++--- BuyseTest-3.3.4/BuyseTest/R/simCompetingRisks.R | 284 - 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Title: Load Configuration Values
Description: A simple approach to configuring R projects with different
parameter values. Configurations are specified using a reduced subset of base
R and parsed accordingly.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ronfig versions 0.0.2 dated 2025-09-15 and 0.0.3 dated 2025-09-24
DESCRIPTION | 8 +-- MD5 | 18 +++---- NEWS.md | 17 ++++++- R/load_config.R | 69 +++++++++++++++++++++++----- inst/doc/ronfig.Rmd | 16 +++--- inst/doc/ronfig.html | 15 +++--- man/load_config.Rd | 23 +++++---- tests/testthat/_snaps/load_config.md | 57 ++++++++++++++++++++++- tests/testthat/test-load_config.R | 85 +++++++++++++++++++++++++++++++++-- vignettes/ronfig.Rmd | 16 +++--- 10 files changed, 262 insertions(+), 62 deletions(-)
Title: Response Data for Light Sensors
Description: Spectral response data for broadband ultraviolet and visible
radiation sensors. Angular response data for broadband ultraviolet and visible
radiation sensors and diffusers used as entrance optics. Data obtained from
multiple sources were used: author-supplied data from scientific research
papers, sensor-manufacturer supplied data, and published sensor
specifications. Part of the 'r4photobiology' suite Aphalo P. J. (2015)
<doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologySensors versions 0.5.1 dated 2023-10-24 and 0.5.2 dated 2025-09-24
DESCRIPTION | 21 +-- MD5 | 58 ++++----- NEWS.md | 10 + R/KIPP-sensors.r | 8 + R/Skye-sensors.r | 8 - R/SolarLight-sensors.r | 2 R/Solarmeter-sensors.r | 4 R/ams-sensors.r | 32 ++++ R/sensors-mspct.r | 22 ++- R/sglux-sensors.r | 5 R/wavebands.r | 11 + README.md | 97 +++++++++------ build/partial.rdb |binary build/vignette.rds |binary data/diffusers-lst.rda |binary data/sensors.mspct.rda |binary inst/doc/r4p-introduction.Rmd | 163 ++++++++++++------------- inst/doc/r4p-introduction.html | 165 +++++++++++++------------ inst/doc/userguide-1.html | 231 +++++++++++++++++++----------------- man/ams_sensors.Rd | 111 ++++++++++------- man/figures/README-example-07-1.png |binary man/kipp_sensors.Rd | 8 + man/photobiologySensors-package.Rd | 2 man/sensors.mspct.Rd | 22 ++- man/sglux_sensors.Rd | 5 man/skye_sensors.Rd | 8 - man/solarlight_sensors.Rd | 2 man/solarmeter_sensors.Rd | 4 man/uv_sensors.Rd | 26 ++-- vignettes/r4p-introduction.Rmd | 163 ++++++++++++------------- 30 files changed, 668 insertions(+), 520 deletions(-)
More information about photobiologySensors at CRAN
Permanent link
Title: Spectral Irradiance Data for Lamps
Description: Spectral emission data for some frequently used lamps including
bulbs and flashlights based on led emitting diodes (LEDs) but excluding
LEDs available as electronic components. Original spectral irradiance data
for incandescent-, LED- and discharge lamps are included. They are
complemented by data on the effect of temperature on the emission by
fluorescent tubes. Part of the 'r4photobiology' suite, Aphalo P. J. (2015)
<doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Lasse Ylianttila [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyLamps versions 0.5.2 dated 2023-10-24 and 0.5.3 dated 2025-09-24
photobiologyLamps-0.5.2/photobiologyLamps/man/photography_lamps.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/DESCRIPTION | 21 photobiologyLamps-0.5.3/photobiologyLamps/MD5 | 78 photobiologyLamps-0.5.3/photobiologyLamps/NEWS.md | 14 photobiologyLamps-0.5.3/photobiologyLamps/R/amaran-m9-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/andoer-ir49-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/elgato-mkl-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/lamp-brands.r | 25 photobiologyLamps-0.5.3/photobiologyLamps/R/lamp-colors.r | 44 photobiologyLamps-0.5.3/photobiologyLamps/R/lamp-types.r | 28 photobiologyLamps-0.5.3/photobiologyLamps/R/lamp-uses.r | 38 photobiologyLamps-0.5.3/photobiologyLamps/R/ledsavers-mspct.r | 9 photobiologyLamps-0.5.3/photobiologyLamps/R/macam.r | 2 photobiologyLamps-0.5.3/photobiologyLamps/R/nichia-led-recom-dim-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/osram-l-18w-840-temp.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/percival-led-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/R/qp-uvb313-temp.r | 9 photobiologyLamps-0.5.3/photobiologyLamps/R/sunwayfot-fl96-mspct.r |only photobiologyLamps-0.5.3/photobiologyLamps/README.md | 164 + photobiologyLamps-0.5.3/photobiologyLamps/build/partial.rdb |binary photobiologyLamps-0.5.3/photobiologyLamps/build/vignette.rds |binary photobiologyLamps-0.5.3/photobiologyLamps/data/amaran-m9-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/andoer-ir49-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/elgato-klm-cct-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/elgato-klm-dim-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/lamps-mspct.rda |binary photobiologyLamps-0.5.3/photobiologyLamps/data/ledsavers.rda |binary photobiologyLamps-0.5.3/photobiologyLamps/data/nichia-led-recom-dim-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/osram-l-18w-840-temp-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/percival-led-dim-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/data/qp-uvb313-temp-mspct.rda |binary photobiologyLamps-0.5.3/photobiologyLamps/data/qp-uvb313-temp-spct.rda |binary photobiologyLamps-0.5.3/photobiologyLamps/data/sunwayfoto-fl96-mspct.rda |only photobiologyLamps-0.5.3/photobiologyLamps/inst/doc/user-guide.R | 101 - photobiologyLamps-0.5.3/photobiologyLamps/inst/doc/user-guide.Rmd | 411 +++- photobiologyLamps-0.5.3/photobiologyLamps/inst/doc/user-guide.html | 940 ++++++---- photobiologyLamps-0.5.3/photobiologyLamps/man/Nichia_LED_RECOM_dim.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/Osram_L_18W_840_temp.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/Percival_LED_dim.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/amaran_m9.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/andoer_ir49.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/elgato_klm_cct.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/figures/README-example1-1.png |binary photobiologyLamps-0.5.3/photobiologyLamps/man/lamp_brands.Rd | 43 photobiologyLamps-0.5.3/photobiologyLamps/man/lamp_colors.Rd | 64 photobiologyLamps-0.5.3/photobiologyLamps/man/lamp_types.Rd | 43 photobiologyLamps-0.5.3/photobiologyLamps/man/lamp_uses.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/man/ledsavers.mspct.Rd | 10 photobiologyLamps-0.5.3/photobiologyLamps/man/macam_lamps.Rd | 2 photobiologyLamps-0.5.3/photobiologyLamps/man/qp_uvb313_temp.spct.Rd | 6 photobiologyLamps-0.5.3/photobiologyLamps/man/sunwayfoto_fl96.mspct.Rd |only photobiologyLamps-0.5.3/photobiologyLamps/vignettes/user-guide.Rmd | 411 +++- 52 files changed, 1661 insertions(+), 802 deletions(-)
More information about photobiologyLamps at CRAN
Permanent link
Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the
'Apache Arrow' application binary interface. Functions to import and
export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures
to and from 'R' objects are provided alongside helpers to facilitate zero-copy
data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C'
data interface.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between nanoarrow versions 0.7.0 dated 2025-07-03 and 0.7.0-1 dated 2025-09-24
DESCRIPTION | 6 +- MD5 | 20 +++--- NEWS.md | 5 + R/array.R | 4 + src/array.c | 25 ++++++++ src/array.h | 9 +++ src/flatcc/portable/pstdalign.h | 5 + src/init.c | 2 src/nanoarrow.c | 115 +++++++++++++++++++++++++--------------- src/nanoarrow.h | 103 +++++++++++++++++++++++++---------- tests/testthat/test-array.R | 40 +++++++++++++ 11 files changed, 242 insertions(+), 92 deletions(-)
Title: R Plotting Functions Using 'ggplot2'
Description: Makes it easy to produce everyday 'ggplot2'
charts in a functional way without an extensive "tree"
implementation. The package includes over 15 functions
for the production and arrangement of basic graphing.
Author: Rick Dean [aut, cre, cph]
Maintainer: Rick Dean <deanr3@bardstown.com>
Diff between RplotterPkg versions 0.1.3 dated 2025-03-05 and 0.1.4 dated 2025-09-24
DESCRIPTION | 9 +++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/create_table.R | 10 +++++++++- README.md | 4 ++++ man/create_table.Rd | 2 +- man/figures/README-unnamed-chunk-2-1.png |binary tests/testthat/_snaps/create_table.md | 2 +- tests/testthat/test-create_table.R | 2 +- 9 files changed, 34 insertions(+), 16 deletions(-)
Title: Bayesian Smoothing of Remote Sensing Image Classification
Description: A Bayesian smoothing method for post-processing of remote
sensing image classification which refines the
labelling in a classified image in order to enhance its classification accuracy.
Combines pixel-based classification methods with a spatial post-processing
method to remove outliers and misclassified pixels.
Author: Gilberto Camara [aut, cre],
Renato Assuncao [aut],
Rolf Simoes [aut],
Felipe Souza [aut]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between bayesEO versions 0.2.1 dated 2024-06-04 and 0.2.2 dated 2025-09-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- inst/extdata/config_colors.yml | 3 +++ src/bayes_smooth.cpp | 4 ++-- src/other_smoothers.cpp | 2 +- tests/testthat/test-bayes.R | 15 +++++---------- 6 files changed, 21 insertions(+), 23 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [ctb],
Victor Perrier [ctb],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.9.0 dated 2025-02-14 and 0.9.2 dated 2025-09-24
antaresEditObject-0.9.0/antaresEditObject/R/createDistrict.R |only antaresEditObject-0.9.0/antaresEditObject/tests/testthat/test-createDistrict.R |only antaresEditObject-0.9.0/antaresEditObject/vignettes/schemas |only antaresEditObject-0.9.2/antaresEditObject/DESCRIPTION | 8 antaresEditObject-0.9.2/antaresEditObject/MD5 | 531 - antaresEditObject-0.9.2/antaresEditObject/NAMESPACE | 340 antaresEditObject-0.9.2/antaresEditObject/NEWS.md | 783 + antaresEditObject-0.9.2/antaresEditObject/R/API-utils.R | 726 - antaresEditObject-0.9.2/antaresEditObject/R/API.R | 688 - antaresEditObject-0.9.2/antaresEditObject/R/RES.R | 196 antaresEditObject-0.9.2/antaresEditObject/R/ST.R | 152 antaresEditObject-0.9.2/antaresEditObject/R/antaresEditObject-package.R | 14 antaresEditObject-0.9.2/antaresEditObject/R/backupStudy.R | 176 antaresEditObject-0.9.2/antaresEditObject/R/checkVersion.R | 78 antaresEditObject-0.9.2/antaresEditObject/R/cleanUpOutput.R | 106 antaresEditObject-0.9.2/antaresEditObject/R/computeTimeStampFromHourly.R | 882 +- antaresEditObject-0.9.2/antaresEditObject/R/computeTimeStepFromHourly.R | 760 - antaresEditObject-0.9.2/antaresEditObject/R/copyOutput.R | 128 antaresEditObject-0.9.2/antaresEditObject/R/createArea.R | 1373 +-- antaresEditObject-0.9.2/antaresEditObject/R/createBindingConstraint.R | 1728 ++-- antaresEditObject-0.9.2/antaresEditObject/R/createCluster.R | 1073 +- antaresEditObject-0.9.2/antaresEditObject/R/createClusterBulk.R | 536 - antaresEditObject-0.9.2/antaresEditObject/R/createClusterST.R | 1162 +- antaresEditObject-0.9.2/antaresEditObject/R/createDSR.R | 1014 +- antaresEditObject-0.9.2/antaresEditObject/R/createLink.R | 662 - antaresEditObject-0.9.2/antaresEditObject/R/createPSP.R | 1074 +- antaresEditObject-0.9.2/antaresEditObject/R/createStudy.R | 497 - antaresEditObject-0.9.2/antaresEditObject/R/district.R |only antaresEditObject-0.9.2/antaresEditObject/R/editArea.R | 486 - antaresEditObject-0.9.2/antaresEditObject/R/editBindingConstraint.R | 860 +- antaresEditObject-0.9.2/antaresEditObject/R/editCluster.R | 559 - antaresEditObject-0.9.2/antaresEditObject/R/editClusterST.R | 832 +- antaresEditObject-0.9.2/antaresEditObject/R/editLink.R | 578 - antaresEditObject-0.9.2/antaresEditObject/R/importStudyAPI.R | 196 antaresEditObject-0.9.2/antaresEditObject/R/playlist.R | 574 - antaresEditObject-0.9.2/antaresEditObject/R/removeArea.R | 454 - antaresEditObject-0.9.2/antaresEditObject/R/removeBindingConstraint.R | 468 - antaresEditObject-0.9.2/antaresEditObject/R/removeCluster.R | 370 antaresEditObject-0.9.2/antaresEditObject/R/removeLink.R | 206 antaresEditObject-0.9.2/antaresEditObject/R/runSimulation.R | 236 antaresEditObject-0.9.2/antaresEditObject/R/runTsGenerator.R | 124 antaresEditObject-0.9.2/antaresEditObject/R/scenarioBuilder.R | 1496 +-- antaresEditObject-0.9.2/antaresEditObject/R/setSolverPath.R | 70 antaresEditObject-0.9.2/antaresEditObject/R/thematic_trimming.R |only antaresEditObject-0.9.2/antaresEditObject/R/tools_aggregate.R | 86 antaresEditObject-0.9.2/antaresEditObject/R/updateAdequacySettings.R | 346 antaresEditObject-0.9.2/antaresEditObject/R/updateGeneralSettings.R | 530 - antaresEditObject-0.9.2/antaresEditObject/R/updateInputSettings.R | 136 antaresEditObject-0.9.2/antaresEditObject/R/updateOptimizationSettings.R | 592 - antaresEditObject-0.9.2/antaresEditObject/R/updateOutputSettings.R | 168 antaresEditObject-0.9.2/antaresEditObject/R/utils.R | 416 - antaresEditObject-0.9.2/antaresEditObject/R/writeAntaresOutput.R | 266 antaresEditObject-0.9.2/antaresEditObject/R/writeEconomicOptions.R | 364 antaresEditObject-0.9.2/antaresEditObject/R/writeHydroValues.R | 1646 ++-- antaresEditObject-0.9.2/antaresEditObject/R/writeIni.R | 316 antaresEditObject-0.9.2/antaresEditObject/R/writeInputTS.R | 616 - antaresEditObject-0.9.2/antaresEditObject/R/writeMiscGen.R | 110 antaresEditObject-0.9.2/antaresEditObject/R/writeOutput.R | 278 antaresEditObject-0.9.2/antaresEditObject/R/writeSeriesPrepro.R | 254 antaresEditObject-0.9.2/antaresEditObject/R/writeWaterValues.R | 158 antaresEditObject-0.9.2/antaresEditObject/README.md | 89 antaresEditObject-0.9.2/antaresEditObject/build/vignette.rds |binary antaresEditObject-0.9.2/antaresEditObject/inst/API/dev-api-offline.R | 258 antaresEditObject-0.9.2/antaresEditObject/inst/API/dev-api-online.R | 380 antaresEditObject-0.9.2/antaresEditObject/inst/API/dev-api-usage.R | 92 antaresEditObject-0.9.2/antaresEditObject/inst/dev/ntc-v820.R | 138 antaresEditObject-0.9.2/antaresEditObject/inst/doc/Antares_new_features_v860.R | 388 antaresEditObject-0.9.2/antaresEditObject/inst/doc/Antares_new_features_v860.Rmd | 628 - antaresEditObject-0.9.2/antaresEditObject/inst/doc/Antares_new_features_v860.html | 3951 ++++------ antaresEditObject-0.9.2/antaresEditObject/inst/doc/Antares_new_features_v920.R |only 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antaresEditObject-0.9.2/antaresEditObject/inst/doc/scenario-builder.R | 256 antaresEditObject-0.9.2/antaresEditObject/inst/doc/scenario-builder.Rmd | 376 antaresEditObject-0.9.2/antaresEditObject/inst/doc/scenario-builder.html | 1106 +- antaresEditObject-0.9.2/antaresEditObject/inst/format_output/digest.csv | 58 antaresEditObject-0.9.2/antaresEditObject/inst/format_output/format.csv | 162 antaresEditObject-0.9.2/antaresEditObject/inst/format_output/tableOutput.csv | 586 - antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/Desktop.ini | 8 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/areas/sets.ini | 12 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/hydro/allocation/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/hydro/common/capacity/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/hydro/prepro/correlation.ini | 6 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antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/thermal/clusters/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/thermal/prepro/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/thermal/series/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/wind/prepro/correlation.ini | 6 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/input/wind/series/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/layers/layers.ini | 8 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/logs/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/output/maps/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/settings/comments.txt | 16 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/settings/generaldata.ini | 154 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/settings/scenariobuilder.dat | 4 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/settings/simulations/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/study.antares | 14 antaresEditObject-0.9.2/antaresEditObject/inst/newStudy/user/ANTARESEDITOBJECT_TODELETE.txt | 2 antaresEditObject-0.9.2/antaresEditObject/inst/study_test_generator/generate_template.R | 674 - antaresEditObject-0.9.2/antaresEditObject/inst/study_test_generator/generate_test_study_870.R | 238 antaresEditObject-0.9.2/antaresEditObject/man/activateRES.Rd | 70 antaresEditObject-0.9.2/antaresEditObject/man/activateST.Rd | 66 antaresEditObject-0.9.2/antaresEditObject/man/add_week_number_column_to_ts.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/adequacyOptions.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/antaresEditObject-package.Rd | 84 antaresEditObject-0.9.2/antaresEditObject/man/api_patch.Rd | 104 antaresEditObject-0.9.2/antaresEditObject/man/backupStudy.Rd | 76 antaresEditObject-0.9.2/antaresEditObject/man/check-version.Rd | 64 antaresEditObject-0.9.2/antaresEditObject/man/checkRemovedArea.Rd | 54 antaresEditObject-0.9.2/antaresEditObject/man/check_consistency_reservoir_values.Rd | 36 antaresEditObject-0.9.2/antaresEditObject/man/check_mingen_vs_hydro_storage.Rd | 46 antaresEditObject-0.9.2/antaresEditObject/man/check_mingen_vs_maxpower.Rd | 46 antaresEditObject-0.9.2/antaresEditObject/man/cleanUpOutput.Rd | 32 antaresEditObject-0.9.2/antaresEditObject/man/computeOtherFromHourlyMulti.Rd | 86 antaresEditObject-0.9.2/antaresEditObject/man/computeOtherFromHourlyYear.Rd | 74 antaresEditObject-0.9.2/antaresEditObject/man/computeTimeStampFromHourly.Rd | 86 antaresEditObject-0.9.2/antaresEditObject/man/convertConfigToAdq.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/copyOutput.Rd | 70 antaresEditObject-0.9.2/antaresEditObject/man/copyStudyWeb.Rd | 74 antaresEditObject-0.9.2/antaresEditObject/man/create-study.Rd | 120 antaresEditObject-0.9.2/antaresEditObject/man/createArea.Rd | 118 antaresEditObject-0.9.2/antaresEditObject/man/createBindingConstraint.Rd | 264 antaresEditObject-0.9.2/antaresEditObject/man/createBindingConstraintBulk.Rd | 196 antaresEditObject-0.9.2/antaresEditObject/man/createCluster.Rd | 378 antaresEditObject-0.9.2/antaresEditObject/man/createClusterBulk.Rd | 226 antaresEditObject-0.9.2/antaresEditObject/man/createClusterST.Rd | 349 antaresEditObject-0.9.2/antaresEditObject/man/createDSR.Rd | 178 antaresEditObject-0.9.2/antaresEditObject/man/createDistrict.Rd | 108 antaresEditObject-0.9.2/antaresEditObject/man/createLink.Rd | 176 antaresEditObject-0.9.2/antaresEditObject/man/createPSP.Rd | 202 antaresEditObject-0.9.2/antaresEditObject/man/create_scb_referential_series_type.Rd | 28 antaresEditObject-0.9.2/antaresEditObject/man/deleteStudy.Rd | 36 antaresEditObject-0.9.2/antaresEditObject/man/detect_pattern_in_binding_constraint.Rd | 44 antaresEditObject-0.9.2/antaresEditObject/man/dicoAdequacySettings.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/dicoGeneralSettings.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/dicoOptimizationSettings.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/dicoOutputSettings.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/dot-api_command_execute_edit_area.Rd | 48 antaresEditObject-0.9.2/antaresEditObject/man/dot-api_command_execute_edit_area_ui.Rd |only antaresEditObject-0.9.2/antaresEditObject/man/dot-dailyToWeekly.Rd | 38 antaresEditObject-0.9.2/antaresEditObject/man/dot-format_ini_rhs.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/dot-format_playlist_weights.Rd | 38 antaresEditObject-0.9.2/antaresEditObject/man/dot-format_ui_data_by_mode.Rd |only antaresEditObject-0.9.2/antaresEditObject/man/dot-hourlyToOther.Rd | 38 antaresEditObject-0.9.2/antaresEditObject/man/dot-initializeLinksArea.Rd | 44 antaresEditObject-0.9.2/antaresEditObject/man/dot-initializeRenewablesArea.Rd | 44 antaresEditObject-0.9.2/antaresEditObject/man/dot-initializeThermalArea.Rd | 48 antaresEditObject-0.9.2/antaresEditObject/man/dot-is_version_9.Rd | 36 antaresEditObject-0.9.2/antaresEditObject/man/dot-split_nodalOptimization_by_target.Rd | 28 antaresEditObject-0.9.2/antaresEditObject/man/editArea.Rd | 138 antaresEditObject-0.9.2/antaresEditObject/man/editBindingConstraint.Rd | 244 antaresEditObject-0.9.2/antaresEditObject/man/editCluster.Rd | 164 antaresEditObject-0.9.2/antaresEditObject/man/editClusterST.Rd | 231 antaresEditObject-0.9.2/antaresEditObject/man/editLink.Rd | 144 antaresEditObject-0.9.2/antaresEditObject/man/figures/badge_api_no.svg | 38 antaresEditObject-0.9.2/antaresEditObject/man/figures/badge_api_ok.svg | 38 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-archived.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-defunct.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-deprecated.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-experimental.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-maturing.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-questioning.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-soft-deprecated.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-stable.svg | 58 antaresEditObject-0.9.2/antaresEditObject/man/figures/lifecycle-superseded.svg | 42 antaresEditObject-0.9.2/antaresEditObject/man/fill_empty_hydro_ini_file.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/fill_empty_hydro_ts_file.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/filteringOptions.Rd | 56 antaresEditObject-0.9.2/antaresEditObject/man/getJobLogs.Rd | 68 antaresEditObject-0.9.2/antaresEditObject/man/getJobs.Rd | 54 antaresEditObject-0.9.2/antaresEditObject/man/get_default_hydro_ini_values.Rd | 26 antaresEditObject-0.9.2/antaresEditObject/man/get_type_check_mingen_vs_hydrostorage.Rd | 34 antaresEditObject-0.9.2/antaresEditObject/man/get_type_check_mingen_vs_hydrostorage_to_trigger.Rd | 62 antaresEditObject-0.9.2/antaresEditObject/man/get_type_check_mingen_vs_maxpower_to_trigger.Rd | 64 antaresEditObject-0.9.2/antaresEditObject/man/group_values_meta_check.Rd | 74 antaresEditObject-0.9.2/antaresEditObject/man/importZipStudyWeb.Rd | 70 antaresEditObject-0.9.2/antaresEditObject/man/list_pollutants_values.Rd | 40 antaresEditObject-0.9.2/antaresEditObject/man/mockSimulationAPI.Rd | 62 antaresEditObject-0.9.2/antaresEditObject/man/nodalOptimizationOptions.Rd | 80 antaresEditObject-0.9.2/antaresEditObject/man/playlist.Rd | 122 antaresEditObject-0.9.2/antaresEditObject/man/propertiesLinkOptions.Rd | 96 antaresEditObject-0.9.2/antaresEditObject/man/removeArea.Rd | 60 antaresEditObject-0.9.2/antaresEditObject/man/removeBindingConstraint.Rd | 116 antaresEditObject-0.9.2/antaresEditObject/man/removeCluster.Rd | 128 antaresEditObject-0.9.2/antaresEditObject/man/removeDistrict.Rd |only antaresEditObject-0.9.2/antaresEditObject/man/removeLink.Rd | 56 antaresEditObject-0.9.2/antaresEditObject/man/replicate_missing_ts.Rd | 38 antaresEditObject-0.9.2/antaresEditObject/man/rollback_to_previous_data.Rd | 60 antaresEditObject-0.9.2/antaresEditObject/man/runSimulation.Rd | 102 antaresEditObject-0.9.2/antaresEditObject/man/runTsGenerator.Rd | 80 antaresEditObject-0.9.2/antaresEditObject/man/scenario-builder.Rd | 409 - antaresEditObject-0.9.2/antaresEditObject/man/searchStudy.Rd | 82 antaresEditObject-0.9.2/antaresEditObject/man/setAPImode.Rd | 68 antaresEditObject-0.9.2/antaresEditObject/man/setSolverPath.Rd | 48 antaresEditObject-0.9.2/antaresEditObject/man/setThematicTrimming.Rd |only antaresEditObject-0.9.2/antaresEditObject/man/storage_values_default.Rd | 50 antaresEditObject-0.9.2/antaresEditObject/man/updateAdequacySettings.Rd | 128 antaresEditObject-0.9.2/antaresEditObject/man/updateGeneralSettings.Rd | 278 antaresEditObject-0.9.2/antaresEditObject/man/updateInputSettings.Rd | 60 antaresEditObject-0.9.2/antaresEditObject/man/updateOptimizationSettings.Rd | 180 antaresEditObject-0.9.2/antaresEditObject/man/updateOutputSettings.Rd | 104 antaresEditObject-0.9.2/antaresEditObject/man/update_generaldata_by_section.Rd | 44 antaresEditObject-0.9.2/antaresEditObject/man/variant-commands.Rd | 82 antaresEditObject-0.9.2/antaresEditObject/man/variant.Rd | 64 antaresEditObject-0.9.2/antaresEditObject/man/write-ini.Rd | 94 antaresEditObject-0.9.2/antaresEditObject/man/writeEconomicOptions.Rd | 90 antaresEditObject-0.9.2/antaresEditObject/man/writeHydroValues.Rd | 116 antaresEditObject-0.9.2/antaresEditObject/man/writeIniHydro.Rd | 118 antaresEditObject-0.9.2/antaresEditObject/man/writeInputTS.Rd | 152 antaresEditObject-0.9.2/antaresEditObject/man/writeMiscGen.Rd | 58 antaresEditObject-0.9.2/antaresEditObject/man/writeOutputValues.Rd | 62 antaresEditObject-0.9.2/antaresEditObject/man/writeSeriesPrepro.Rd | 114 antaresEditObject-0.9.2/antaresEditObject/man/writeWaterValues.Rd | 78 antaresEditObject-0.9.2/antaresEditObject/tests/testthat.R | 18 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/helper_init.R | 54 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-RES.R | 208 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-RemoveClusterST.R |only antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-ST.R | 138 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-computeTimeStepFromHourly.R | 178 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-compute_timeStamp_from_hourly.R | 178 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createArea.R | 1121 +- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createBindingConstraint.R | 1892 ++-- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createCluster.R | 572 - antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createClusterBulk.R | 376 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createClusterST.R | 1055 ++ antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createLink.R | 628 - antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-createStudy.R | 220 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-district.R |only antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-editArea.R | 244 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-editBindingConstraint.R | 820 +- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-editCluster.R | 248 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-editClusterST.R | 1230 ++- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-editLink.R | 124 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-playlist.R | 202 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-removeBindingConstraint.R | 476 - antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-scenarioBuilder.R | 1327 +-- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-thematic_trimming.R |only antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateAdequacyPatch.R | 98 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateBindingConstraint.R | 124 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateGeneralSettings.R | 140 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateInputSettings.R | 66 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateOptimizationSettings.R | 96 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-updateOutputSettings.R | 90 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-utils.R | 30 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeEconomicOptions.R | 206 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeHydroValues.R | 2352 ++--- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeInputTS.R | 1412 +-- antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeOutputValues.R | 80 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeSeriesPrepro.R | 138 antaresEditObject-0.9.2/antaresEditObject/tests/testthat/test-writeWaterValues.R | 108 antaresEditObject-0.9.2/antaresEditObject/vignettes/Antares_new_features_v860.Rmd | 628 - antaresEditObject-0.9.2/antaresEditObject/vignettes/Antares_new_features_v920.Rmd |only antaresEditObject-0.9.2/antaresEditObject/vignettes/antaresEditObject.Rmd | 718 - antaresEditObject-0.9.2/antaresEditObject/vignettes/api-variant-management.Rmd | 701 - antaresEditObject-0.9.2/antaresEditObject/vignettes/mingen_draw.png |only antaresEditObject-0.9.2/antaresEditObject/vignettes/mingen_hydro_rules.png |only antaresEditObject-0.9.2/antaresEditObject/vignettes/renewables-energy-sources.Rmd | 262 antaresEditObject-0.9.2/antaresEditObject/vignettes/scenario-builder.Rmd | 376 275 files changed, 37981 insertions(+), 34924 deletions(-)
More information about antaresEditObject at CRAN
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Title: Procedures Related to the Zadeh's Extension Principle for Fuzzy
Data
Description: Procedures for calculation, plotting, animation, and approximation of the outputs for fuzzy numbers (see A.I. Ban, L. Coroianu, P. Grzegorzewski "Fuzzy Numbers: Approximations, Ranking and Applications" (2015)) based on the Zadeh's Extension Principle (see de Barros, L.C., Bassanezi, R.C., Lodwick, W.A. (2017) <doi:10.1007/978-3-662-53324-6_2>).
Author: Maciej Romaniuk [cre, aut] ),
Abbas Parchami [aut] ),
Przemyslaw Grzegorzewski [ctb] )
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between ZEP versions 0.2.0 dated 2025-09-18 and 0.2.3 dated 2025-09-24
DESCRIPTION | 12 +++++++----- MD5 | 17 ++++++++++------- NAMESPACE | 1 + R/AnimateZEP.R |only R/AnimateZFunction.R | 11 +++++++++-- R/FuzzyApproximation.R | 1 + R/PlotZFunction.R | 19 ++++++++++--------- man/AnimateZEP.Rd |only man/AnimateZFunction.Rd | 3 +++ man/FuzzyApproximation.Rd | 1 + tests/testthat/test-AnimateZEP.R |only 11 files changed, 42 insertions(+), 23 deletions(-)
Title: A Simple Sky Illuminance Model
Description: A tool to calculate sky illuminance values (in lux) for both sun and moon. The
model is a translation of the Fortran code by Janiczek and DeYoung (1987)
<https://archive.org/details/DTIC_ADA182110>.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between skylight versions 1.2 dated 2023-11-04 and 1.3 dated 2025-09-24
skylight-1.2/skylight/R/subroutines.R |only skylight-1.3/skylight/DESCRIPTION | 22 - skylight-1.3/skylight/MD5 | 24 - skylight-1.3/skylight/NAMESPACE | 6 skylight-1.3/skylight/R/RcppExports.R |only skylight-1.3/skylight/R/skylight.R | 174 ++-------- skylight-1.3/skylight/build/vignette.rds |binary skylight-1.3/skylight/inst/doc/skylight.html | 239 +++++++------- skylight-1.3/skylight/inst/doc/skylight_advanced.R | 62 +-- skylight-1.3/skylight/inst/doc/skylight_advanced.html | 288 +++++++++--------- skylight-1.3/skylight/man/skylight.Rd | 24 + skylight-1.3/skylight/man/skylight_rcpp.Rd |only skylight-1.3/skylight/src |only skylight-1.3/skylight/tests/testthat/test_skylight.R | 24 - 14 files changed, 394 insertions(+), 469 deletions(-)
Title: Plant Photobiology Related Functions and Data
Description: Provides functions for quantifying visible (VIS) and ultraviolet
(UV) radiation in relation to the photoreceptors Phytochromes,
Cryptochromes, and UVR8 which are present in plants. It also includes data
sets on the optical properties of plants. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyPlants versions 0.6.0 dated 2025-01-12 and 0.6.1 dated 2025-09-24
photobiologyPlants-0.6.0/photobiologyPlants/man/B_G.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/R_FR.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVA1_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVA2_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVA_PAR.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVA_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVAlw_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVAsw_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVB_PAR.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVB_UV.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UVB_UVA.Rd |only photobiologyPlants-0.6.0/photobiologyPlants/man/UV_PAR.Rd |only photobiologyPlants-0.6.1/photobiologyPlants/DESCRIPTION | 21 photobiologyPlants-0.6.1/photobiologyPlants/MD5 | 117 - photobiologyPlants-0.6.1/photobiologyPlants/NAMESPACE | 10 photobiologyPlants-0.6.1/photobiologyPlants/NEWS.md | 22 photobiologyPlants-0.6.1/photobiologyPlants/R/McCree-photosynthesis-mspct.R | 2 photobiologyPlants-0.6.1/photobiologyPlants/R/Pfr-P-ratio.R | 7 photobiologyPlants-0.6.1/photobiologyPlants/R/Pfr-Ptot.R | 42 photobiologyPlants-0.6.1/photobiologyPlants/R/PfrPtot-RFR.R | 3 photobiologyPlants-0.6.1/photobiologyPlants/R/Phy-Sigma-FR.R | 5 photobiologyPlants-0.6.1/photobiologyPlants/R/Phy-Sigma-R.R | 4 photobiologyPlants-0.6.1/photobiologyPlants/R/Phy-Sigma.R | 4 photobiologyPlants-0.6.1/photobiologyPlants/R/carotenoids-mspct.r | 5 photobiologyPlants-0.6.1/photobiologyPlants/R/chlorophylls-fluo-mspct.r | 6 photobiologyPlants-0.6.1/photobiologyPlants/R/chlorophylls-mspct.r | 4 photobiologyPlants-0.6.1/photobiologyPlants/R/phy-reaction-rates.R | 7 photobiologyPlants-0.6.1/photobiologyPlants/R/phytochrome-data.r | 4 photobiologyPlants-0.6.1/photobiologyPlants/R/plant-q-irrads.r |only photobiologyPlants-0.6.1/photobiologyPlants/R/plant-qq-ratios.r | 681 ++++++---- photobiologyPlants-0.6.1/photobiologyPlants/R/water.vapour.R | 1 photobiologyPlants-0.6.1/photobiologyPlants/build/partial.rdb |binary photobiologyPlants-0.6.1/photobiologyPlants/build/vignette.rds |binary photobiologyPlants-0.6.1/photobiologyPlants/data/CRYs.mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/McCree.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/PHOTs.mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/UVR8s.mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/ZTLs.mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/carotenoids-mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/chlorophylls-fluorescence-mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/chlorophylls-mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/leaf-fluorescence-mspct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/leaves.spct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/data/phytochrome.spct.rda |binary photobiologyPlants-0.6.1/photobiologyPlants/inst/doc/r4p-introduction.Rmd | 158 +- photobiologyPlants-0.6.1/photobiologyPlants/inst/doc/r4p-introduction.html | 166 +- photobiologyPlants-0.6.1/photobiologyPlants/inst/doc/user-guide.R | 5 photobiologyPlants-0.6.1/photobiologyPlants/inst/doc/user-guide.Rmd | 22 photobiologyPlants-0.6.1/photobiologyPlants/inst/doc/user-guide.html | 319 ++-- photobiologyPlants-0.6.1/photobiologyPlants/man/ET_ref.Rd | 289 ++-- photobiologyPlants-0.6.1/photobiologyPlants/man/McCree_photosynthesis.mspct.Rd | 7 photobiologyPlants-0.6.1/photobiologyPlants/man/PHYs.mspct.Rd | 13 photobiologyPlants-0.6.1/photobiologyPlants/man/Pfr_Ptot.Rd | 39 photobiologyPlants-0.6.1/photobiologyPlants/man/Pfr_Ptot_R_FR.Rd | 9 photobiologyPlants-0.6.1/photobiologyPlants/man/Phy_Sigma.Rd | 10 photobiologyPlants-0.6.1/photobiologyPlants/man/Phy_Sigma_FR.Rd | 11 photobiologyPlants-0.6.1/photobiologyPlants/man/Phy_Sigma_R.Rd | 11 photobiologyPlants-0.6.1/photobiologyPlants/man/Phy_reaction_rates.Rd | 13 photobiologyPlants-0.6.1/photobiologyPlants/man/carotenoids.mspct.Rd | 4 photobiologyPlants-0.6.1/photobiologyPlants/man/chlorophylls.mspct.Rd | 10 photobiologyPlants-0.6.1/photobiologyPlants/man/chlorophylls_fluorescence.mspct.Rd | 10 photobiologyPlants-0.6.1/photobiologyPlants/man/net_irradiance.Rd | 101 - photobiologyPlants-0.6.1/photobiologyPlants/man/photon-irradiances.Rd |only photobiologyPlants-0.6.1/photobiologyPlants/man/photon-ratios.Rd |only photobiologyPlants-0.6.1/photobiologyPlants/man/water_vp_sat.Rd | 448 +++--- photobiologyPlants-0.6.1/photobiologyPlants/vignettes/r4p-introduction.Rmd | 158 +- photobiologyPlants-0.6.1/photobiologyPlants/vignettes/user-guide.Rmd | 22 67 files changed, 1572 insertions(+), 1198 deletions(-)
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Title: Public Economic Data and Quantitative Analysis
Description: Provides an interface to access public economic and financial data for
economic research and quantitative analysis. The data sources including
NBS, FRED, Sina, Eastmoney and etc. It also provides quantitative
functions for trading strategies based on the 'data.table', 'TTR',
'PerformanceAnalytics' and etc packages.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between pedquant versions 0.2.5 dated 2025-07-26 and 0.2.6 dated 2025-09-24
DESCRIPTION | 6 ++-- MD5 | 15 ++++++----- NAMESPACE | 3 ++ NEWS.md | 4 +++ R/func_helper.R | 9 +++--- R/md_2chinamoney.R | 62 ++++++++++++++++++++++++++++++++++++++++++++---- R/pq_plot2.R | 2 - README.md | 8 +++--- inst/extdata/README.Rmd |only 9 files changed, 85 insertions(+), 24 deletions(-)
Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database <doi:10.1016/j.chemosphere.2024.143078>.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ECOTOXr versions 1.2.2 dated 2025-08-19 and 1.2.4 dated 2025-09-24
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/database_access.r | 2 +- R/init.r | 3 +-- inst/doc/sanitising-ecotox.Rmd | 2 +- inst/doc/sanitising-ecotox.html | 2 +- man/check_ecotox_version.Rd | 2 +- tests/testthat/test_build.r | 11 ++++++++++- tests/testthat/test_online.r | 9 ++++++--- tests/testthat/test_sanitation.r | 2 +- vignettes/sanitising-ecotox.Rmd | 2 +- 12 files changed, 44 insertions(+), 26 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via Markov chain Monte Carlo (MCMC) based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>),
particle MCMC, and its delayed acceptance version.
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models
with linear-Gaussian state dynamics, as well as general non-linear Gaussian
models and discretised diffusion models are supported.
See Helske and Vihola (2021, <doi:10.32614/RJ-2021-103>) for details.
Author: Jouni Helske [aut, cre] ,
Matti Vihola [aut]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 2.0.2 dated 2023-10-27 and 2.0.3 dated 2025-09-24
DESCRIPTION | 11 MD5 | 74 - NEWS.md | 634 ++++---- R/approx.R | 210 +- R/bssm-package.R | 526 +++---- R/ekpf_filter.R | 168 +- R/fitted.R | 242 +-- R/kfilter.R | 378 ++--- R/models.R | 3300 ++++++++++++++++++++++----------------------- R/post_correction.R | 616 ++++---- R/predict.R | 712 ++++----- R/run_mcmc.R | 1714 +++++++++++------------ R/summary.R | 254 +-- README.md | 2 build/vignette.rds |binary inst/doc/bssm.Rmd | 410 ++--- inst/doc/bssm.html | 13 inst/doc/growth_model.Rmd | 444 +++--- inst/doc/growth_model.html | 22 inst/doc/psi_pf.R | 532 +++---- inst/doc/psi_pf.Rmd | 900 ++++++------ inst/doc/psi_pf.html | 3 inst/doc/sde_model.Rmd | 228 +-- inst/doc/sde_model.html | 7 src/R_approx.cpp | 2 src/R_psi.cpp | 2 src/approx_mcmc.cpp | 8 src/mcmc.cpp | 8 src/model_ssm_mng.cpp | 6 src/model_ssm_nlg.cpp | 6 src/model_ssm_sde.cpp | 4 src/model_ssm_ulg.cpp | 40 src/model_ssm_ung.cpp | 22 tests/test_all.R | 8 vignettes/bssm.Rmd | 410 ++--- vignettes/growth_model.Rmd | 444 +++--- vignettes/psi_pf.Rmd | 900 ++++++------ vignettes/sde_model.Rmd | 228 +-- 38 files changed, 6749 insertions(+), 6739 deletions(-)
Title: Create Actuarial Experience Studies: Prepare Data, Summarize
Results, and Create Reports
Description: Experience studies are used by actuaries to explore historical
experience across blocks of business and to inform assumption setting
activities. This package provides functions for preparing data, creating
studies, visualizing results, and beginning assumption development.
Experience study methods, including exposure calculations, are described in:
Atkinson & McGarry (2016) "Experience Study Calculations"
<https://www.soa.org/49378a/globalassets/assets/files/research/experience-study-calculations.pdf>.
The limited fluctuation credibility method used by the 'exp_stats()'
function is described in: Herzog (1999, ISBN:1-56698-374-6)
"Introduction to Credibility Theory".
Author: Matt Heaphy [aut, cre]
Maintainer: Matt Heaphy <mattrmattrs@gmail.com>
Diff between actxps versions 1.6.0 dated 2025-01-07 and 1.6.1 dated 2025-09-24
DESCRIPTION | 8 MD5 | 78 +- NEWS.md | 5 R/add_predictions.R | 6 R/exp_df_helpers.R | 91 ++- R/exp_shiny.R | 811 +++++++++++++++++++------------ R/exp_stats.R | 320 +++++++----- R/expose.R | 203 ++++--- R/expose_split.R | 131 ++--- R/exposed_df_helpers.R | 230 +++++--- R/globals.R | 76 ++ R/plot_special.R | 71 +- R/plot_special_trx.R | 8 R/plot_theme.R | 26 R/plots.R | 210 +++++--- R/pol_yr.R | 8 R/step_expose.R | 79 +-- R/tables.R | 328 +++++++----- R/transactions.R | 49 + R/trx_df_helpers.R | 77 +- R/trx_stats.R | 237 +++++---- build/vignette.rds |binary inst/doc/actxps.html | 7 inst/doc/exp_summary.html | 5 inst/doc/exposures.html | 5 inst/doc/misc.html | 5 inst/doc/transactions.html | 7 man/step_expose.Rd | 26 tests/testthat/test-add_predictions.R | 27 - tests/testthat/test-exp_df_helpers.R | 49 + tests/testthat/test-exp_stats.R | 111 ++-- tests/testthat/test-expose.R | 574 ++++++++++++--------- tests/testthat/test-exposed_df_helpers.R | 238 +++++---- tests/testthat/test-plots.R | 228 +++++--- tests/testthat/test-pol_yr.R | 18 tests/testthat/test-step_expose.R | 11 tests/testthat/test-tables.R | 57 +- tests/testthat/test-transactions.R | 73 +- tests/testthat/test-trx_df_helpers.R | 19 tests/testthat/test-trx_stats.R | 81 +-- 40 files changed, 2813 insertions(+), 1780 deletions(-)
Title: Interlinear Glossed Linguistic Examples and Abbreviation Lists
Generation
Description: Helps to render interlinear glossed linguistic examples in html
'rmarkdown' documents and then semi-automatically compiles the list of
glosses at the end of the document. It also provides a database of linguistic
glosses.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingglosses versions 0.0.9 dated 2025-03-05 and 0.0.10 dated 2025-09-24
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ R/add_gloss.R | 7 +++++-- R/gloss_example.R | 32 ++++++++++++++++++-------------- 5 files changed, 38 insertions(+), 26 deletions(-)
Title: Mean Comparison in 'ggplot2'
Description: Add mean comparison annotations to a 'ggplot'.
This package provides an easy way to indicate if two or more groups are significantly different in a 'ggplot'.
Usually you do not need to specify the test method, you only need to tell stat_compare() whether you want to perform a parametric test or a nonparametric test, and stat_compare() will automatically choose the appropriate test method based on your data.
For comparisons between two groups, the p-value is calculated by t-test (parametric) or Wilcoxon rank sum test (nonparametric). For comparisons among more than two groups, the p-value is calculated by One-way ANOVA (parametric) or Kruskal-Wallis test (nonparametric).
Author: Hao Wang [aut, cre]
Maintainer: Hao Wang <wanghao8772@gmail.com>
Diff between ggcompare versions 0.0.4 dated 2025-08-20 and 0.0.5 dated 2025-09-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ R/GGExtensions.R | 36 +++++++++++++++++++----------------- man/stat_compare.Rd | 4 ++-- 5 files changed, 31 insertions(+), 26 deletions(-)
Title: Phylogenetic ANalyses of DiversificAtion
Description: Implements macroevolutionary analyses on phylogenetic trees. See
Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011)
<DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>,
Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>,
Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>,
Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>,
Drury et al. (2017) <DOI:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>,
Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, Maliet et al. (2019) <DOI:10.1038/s41559-019-0908-0>,
Billaud et al. (2019) <DOI:10.1093/sysbio/syz057>, Lewi [...truncated...]
Author: Helene Morlon [aut, cre, cph],
Eric Lewitus [aut, cph],
Fabien Condamine [aut, cph],
Marc Manceau [aut, cph],
Julien Clavel [aut, cph],
Jonathan Drury [aut, cph],
Olivier Billaud [aut, cph],
Odile Maliet [aut, cph],
Leandro Aristide [aut, cph],
Benoi [...truncated...]
Maintainer: Helene Morlon <helene.morlon@bio.ens.psl.eu>
Diff between RPANDA versions 2.4 dated 2025-01-14 and 2.5 dated 2025-09-24
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++++----- NAMESPACE | 8 ++++++-- R/fit_t_thresh.R |only R/plot.fit_t_thresh.env.r |only R/plot_BipartiteEvol.R | 2 +- man/fit_t_env_ou.Rd | 8 +++++--- man/fit_t_thresh.Rd |only man/lines.fit_t_env.ou.Rd | 2 +- man/lines.fit_t_thresh.Rd |only man/plot.fit_t_thresh.Rd |only 11 files changed, 27 insertions(+), 16 deletions(-)
Title: Search and Get Data from the I14Y Interoperability Platform of
Switzerland
Description: Search and download Swiss data and metadata from the I14Y
interoperability platform of Switzerland using its public APIs
<https://www.i14y.admin.ch/api/index.html>.
Author: Felix Luginbuhl [aut, cre, cph] ,
Felix Lorenz [ctr]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between I14Y versions 0.1.5 dated 2025-07-14 and 0.1.6 dated 2025-09-24
DESCRIPTION | 6 +- MD5 | 30 +++++++------- NEWS.md | 4 + R/i14y_get_codelist.R | 23 +++++++--- R/i14y_get_concept.R | 14 ++++-- R/i14y_get_concept_all_versions.R | 19 ++++++-- R/i14y_get_content_information.R | 17 ++++++- R/i14y_get_data_service.R | 19 ++++++-- R/i14y_get_data_structure.R | 19 ++++++-- R/i14y_get_dataset_metadata.R | 12 ++++- R/i14y_get_nomenclature_level.R | 44 +++++++++++++------- R/i14y_get_nomenclature_level_multiple.R | 44 +++++++++++++------- R/i14y_search_catalog.R | 48 ++++++++++++++-------- R/i14y_search_concept.R | 66 ++++++++++++++++++++++--------- R/i14y_search_nomenclature.R | 43 ++++++++++++-------- R/validate.R | 23 +--------- 16 files changed, 280 insertions(+), 151 deletions(-)
Title: Tools for Using Fonts
Description: Tools to using fonts other than the standard PostScript fonts.
This package makes it easy to use system TrueType fonts and with PDF or
PostScript output files, and with bitmap output files in Windows. extrafont
can also be used with fonts packaged specifically to be used with, such as
the fontcm package, which has Computer Modern PostScript fonts with math
symbols.
Author: Winston Chang [aut],
Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
This is a re-admission after prior archival of version 0.19 dated 2023-01-18
Diff between extrafont versions 0.19 dated 2023-01-18 and 0.20 dated 2025-09-24
extrafont-0.19/extrafont/man/extrafont.Rd |only extrafont-0.20/extrafont/DESCRIPTION | 32 +++++++++++++++------- extrafont-0.20/extrafont/MD5 | 22 +++++++++++---- extrafont-0.20/extrafont/NEWS | 8 +++++ extrafont-0.20/extrafont/R/extrafont.r | 16 ++++------- extrafont-0.20/extrafont/README.md | 15 ++++++++-- extrafont-0.20/extrafont/man/extrafont-package.Rd |only extrafont-0.20/extrafont/tests |only 8 files changed, 66 insertions(+), 27 deletions(-)
Title: Clustering with Compositional Data
Description: Cluster analysis with compositional data using the alpha--transformation. Relevant papers include: Tsagris M. and Kontemeniotis N. (2025), <doi:10.48550/arXiv.2509.05945>. Tsagris M.T., Preston S. and Wood A.T.A. (2011), <doi:10.48550/arXiv.1106.1451>. Garcia-Escudero Luis A., Gordaliza Alfonso, Matran Carlos, Mayo-Iscar Agustin. (2008), <doi:10.1214/07-AOS515>.
Author: Michail Tsagris [aut, cre],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalClust versions 1.0 dated 2025-09-18 and 1.1 dated 2025-09-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/index_max.R | 2 ++ R/index_min.R | 2 ++ man/CompositionalClust-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 10 deletions(-)
More information about CompositionalClust at CRAN
Permanent link
Title: Statistical Analysis to Identify Isotope Incorporating
Metagenomic Features
Description: Statistical analysis as part of a quantitative stable isotope
probing (SIP) metagenomics study to identify isotope incorporating
metagenomic features. Helpful reading and a vignette in bookdown
format is provided on the package site
<https://zielslab.github.io/SIPmg.github.io/>.
Author: Pranav Sampara [aut, cre],
Kate Waring [ctb],
Ryan Ziels [aut],
Alma Garcia Roche [aut]
Maintainer: Pranav Sampara <pranav.sai.4@gmail.com>
This is a re-admission after prior archival of version 1.4.1 dated 2023-02-21
Diff between SIPmg versions 1.4.1 dated 2023-02-21 and 3.0 dated 2025-09-24
DESCRIPTION | 58 MD5 | 36 NAMESPACE | 3 R/DESeq2_l2fc.R | 255 - R/functions_qSIP_MAGs.R | 209 - R/sequin_scaling_lm.R | 92 R/sequin_scaling_rlm.R | 83 build/vignette.rds |binary inst/doc/SIPmg-vignette.R | 635 +-- inst/doc/SIPmg-vignette.Rmd | 1354 +++--- inst/doc/SIPmg-vignette.html | 5741 ++++++++++++++-------------- man/as.Num.Rd |only man/calc_Mheavymax_MAGs.Rd | 2 man/calc_atom_excess_MAGs.Rd | 2 man/phyloseq2df.Rd |only man/phyloseq2table.Rd |only man/qSIP_atom_excess_MAGs.Rd | 2 man/qSIP_bootstrap_fcr.Rd | 15 man/scale_features_lm.Rd | 2 vignettes/SIPmg-vignette.Rmd | 1354 +++--- vignettes/mock_input_data/fractions_15N.csv |only 21 files changed, 5180 insertions(+), 4663 deletions(-)
Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398_An_Algorithm_for_Small_Count_Rounding_of_Tabular_Data>.
Author: Oeyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 1.2.0 dated 2025-02-05 and 1.2.5 dated 2025-09-24
DESCRIPTION | 10 - MD5 | 29 ++--- NAMESPACE | 3 NEWS.md | 24 ++++ R/PLSrounding.R | 119 +++++++++++++++++++---- R/PLSroundingLoop.R | 10 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction_to_SmallCountRounding.Rmd | 1 inst/doc/Introduction_to_SmallCountRounding.html | 72 ++++++------- man/PLSrounding.Rd | 31 +++++ man/PLSroundingLoop.Rd | 5 man/figures |only tests/testthat/test-PLSrounding.R | 11 +- tests/testthat/test-PLSroundingLoop.R | 6 - vignettes/Introduction_to_SmallCountRounding.Rmd | 1 16 files changed, 234 insertions(+), 88 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: Applied Statistics for Economics and Management with R
Description: Datasets and functions for the book "Statistiques pour l’économie et la gestion", "Théorie et applications en entreprise", F. Bertrand, Ch. Derquenne, G. Dufrénot, F. Jawadi and M. Maumy, C. Borsenberger editor, (2021, ISBN:9782807319448, De Boeck Supérieur, Louvain-la-Neuve).
The first chapter of the book is dedicated to an introduction to statistics and their world.
The second chapter deals with univariate exploratory statistics and graphics.
The third chapter deals with bivariate and multivariate exploratory statistics and graphics.
The fourth chapter is dedicated to data exploration with Principal Component Analysis.
The fifth chapter is dedicated to data exploration with Correspondance Analysis.
The sixth chapter is dedicated to data exploration with Multiple Correspondance Analysis.
The seventh chapter is dedicated to data exploration with automatic clustering.
The eighth chapter is dedicated to an introduction to probability theory and classical probability distributions.
The ni [...truncated...]
Author: Frederic Bertrand [cre, aut] ,
Claire Borsenberger [ctb],
Christian Derquenne [ctb],
Gilles Dufrenot [ctb],
Fredj Jawadi [ctb],
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between sageR versions 0.6.1 dated 2023-03-23 and 0.7.0 dated 2025-09-24
DESCRIPTION | 28 +++++++++++++------------ MD5 | 41 +++++++++++++++++++++---------------- NEWS.md | 7 ++++++ R/functions.R | 4 +-- README.md | 4 ++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 ++- inst/_pkgdown.yml |only inst/doc/AllLinksExtVignettes.R | 6 ++--- inst/doc/AllLinksExtVignettes.Rmd | 4 +-- inst/doc/AllLinksExtVignettes.html | 22 +++++++++---------- man/dotchart3.Rd | 2 - man/plotcdf3.Rd | 2 - man/presid_2012.Rd | 4 +-- man/sageR-package.Rd | 4 +-- tests/testthat/Rplots.pdf | 6 ++--- tests/testthat/helper-sageR.R |only tests/testthat/test-data.R |only tests/testthat/test-exports.R |only tests/testthat/test-help.R |only tests/testthat/test-load.R |only tests/testthat/test-todo.R |only tests/testthat/test_plotcdf3.R | 2 - vignettes/AllLinksExtVignettes.Rmd | 4 +-- 25 files changed, 82 insertions(+), 62 deletions(-)
Title: 'ttf2pt1' Program
Description: Contains the program 'ttf2pt1', for use with the
'extrafont' package. This product includes software developed by the 'TTF2PT1'
Project and its contributors.
Author: Winston Chang [aut],
Andrew Weeks [aut],
Frank M. Siegert [aut],
Mark Heath [aut],
Thomas Henlick [aut],
Sergey Babkin [aut],
Turgut Uyar [aut],
Rihardas Hepas [aut],
Szalay Tamas [aut],
Johan Vromans [aut],
Petr Titera [aut],
Lei Wang [aut],
Chen Xi [...truncated...]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
This is a re-admission after prior archival of version 1.3.12 dated 2023-01-22
Diff between Rttf2pt1 versions 1.3.12 dated 2023-01-22 and 1.3.13 dated 2025-09-24
Rttf2pt1-1.3.12/Rttf2pt1/man/Rttf2pt1.Rd |only Rttf2pt1-1.3.13/Rttf2pt1/DESCRIPTION | 99 ++++-- Rttf2pt1-1.3.13/Rttf2pt1/MD5 | 38 +- Rttf2pt1-1.3.13/Rttf2pt1/NEWS.md | 28 + Rttf2pt1-1.3.13/Rttf2pt1/R/Rttf2pt1.r | 13 Rttf2pt1-1.3.13/Rttf2pt1/README.md | 20 - Rttf2pt1-1.3.13/Rttf2pt1/man/Rttf2pt1-package.Rd |only Rttf2pt1-1.3.13/Rttf2pt1/src/Makefile.win | 23 - Rttf2pt1-1.3.13/Rttf2pt1/src/README.md | 2 Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/bdf.c | 33 +- Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/bitmap.c | 197 ++++++------ Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/ft.c | 24 - Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/global.h | 5 Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/pt1.c | 377 +++++++++++++---------- Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/t1asm.c | 49 ++ Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/ttf.c | 90 +++-- Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/ttf.h | 12 Rttf2pt1-1.3.13/Rttf2pt1/src/ttf2pt1/ttf2pt1.c | 313 ++++++++++++------- Rttf2pt1-1.3.13/Rttf2pt1/tests |only 19 files changed, 827 insertions(+), 496 deletions(-)
Title: Model BIC Posterior Probability
Description: Fits the neighboring models of a fitted
structural equation model and assesses the model
uncertainty of the fitted model based on BIC posterior
probabilities, using the method presented in
Wu, Cheung, and Leung (2020)
<doi:10.1080/00273171.2019.1574546>.
Author: Shu Fai Cheung [aut, cre] ,
Huiping Wu [aut],
Shing On Leung [aut] ,
Ivan Jacob Agaloos Pesigan [ctb]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between modelbpp versions 0.1.5 dated 2024-09-16 and 0.1.6 dated 2025-09-24
modelbpp-0.1.5/modelbpp/inst/doc/modelbpp.R |only modelbpp-0.1.6/modelbpp/DESCRIPTION | 17 modelbpp-0.1.6/modelbpp/MD5 | 38 modelbpp-0.1.6/modelbpp/NAMESPACE | 1 modelbpp-0.1.6/modelbpp/NEWS.md | 20 modelbpp-0.1.6/modelbpp/R/helpers4_for_model_graph.R | 2 modelbpp-0.1.6/modelbpp/R/model_set_combined.R |only modelbpp-0.1.6/modelbpp/R/print.model_set.R | 4 modelbpp-0.1.6/modelbpp/README.md | 2 modelbpp-0.1.6/modelbpp/build/partial.rdb |binary modelbpp-0.1.6/modelbpp/build/vignette.rds |binary modelbpp-0.1.6/modelbpp/inst/doc/modelbpp.Rmd | 988 +++++++++------- modelbpp-0.1.6/modelbpp/inst/doc/modelbpp.html | 142 +- modelbpp-0.1.6/modelbpp/inst/tinytest/test_cmf.R |only modelbpp-0.1.6/modelbpp/inst/tinytest/test_cmf_error.R |only modelbpp-0.1.6/modelbpp/man/model_set_combined.Rd |only modelbpp-0.1.6/modelbpp/man/print.model_set.Rd | 4 modelbpp-0.1.6/modelbpp/vignettes/graph1-1.png |binary modelbpp-0.1.6/modelbpp/vignettes/graph1_df2-1.png |binary modelbpp-0.1.6/modelbpp/vignettes/modelbpp.Rmd | 988 +++++++++------- modelbpp-0.1.6/modelbpp/vignettes/modelbpp.Rmd.original |only modelbpp-0.1.6/modelbpp/vignettes/out1_no_m1_x-1.png |binary modelbpp-0.1.6/modelbpp/vignettes/out1_prior-1.png |binary 23 files changed, 1363 insertions(+), 843 deletions(-)
Title: Interactive Weibull Probability Plots
Description: Build interactive Weibull Probability
Plots with 'WeibullR' by David Silkworth and Jurgen Symynck (2022)
<https://CRAN.R-project.org/package=WeibullR>, an R package for
Weibull analysis, and 'plotly' by Carson Sievert (2020) <https://plotly-r.com>,
an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.plotly versions 0.3.1 dated 2025-07-16 and 0.3.2 dated 2025-09-24
DESCRIPTION | 8 ++--- MD5 | 26 ++++++++++--------- NEWS.md | 6 ++++ R/WeibullR.plotly-package.R |only R/plotly_contour.R | 5 ++- R/plotly_duane.R | 25 ++++++++++-------- R/plotly_rga.R | 16 +++++++++-- R/plotly_wblr.R | 55 +++++++++++++++++++++++++++++------------ README.md | 15 +++++------ inst/WORDLIST | 4 ++ man/WeibullR.plotly-package.Rd |only man/plotly_contour.Rd | 6 ++-- man/plotly_duane.Rd | 24 +++++++++-------- man/plotly_rga.Rd | 15 ++++++++--- man/plotly_wblr.Rd | 55 +++++++++++++++++++++++++++++------------ 15 files changed, 173 insertions(+), 87 deletions(-)
More information about WeibullR.plotly at CRAN
Permanent link
Title: Flexible Genotyping for Polyploids
Description: Implements empirical Bayes approaches to genotype
polyploids from next generation sequencing data while
accounting for allele bias, overdispersion, and sequencing
error. The main functions are flexdog() and multidog(),
which allow the specification
of many different genotype distributions. Also provided are functions to
simulate genotypes, rgeno(), and read-counts, rflexdog(), as well as
functions to calculate oracle genotyping error rates, oracle_mis(), and
correlation with the true genotypes, oracle_cor(). These latter two
functions are useful for read depth calculations. Run
browseVignettes(package = "updog") in R for example usage. See
Gerard et al. (2018) <doi:10.1534/genetics.118.301468> and
Gerard and Ferrao (2020) <doi:10.1093/bioinformatics/btz852> for details
on the implemented methods.
Author: David Gerard [aut, cre]
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between updog versions 2.1.5 dated 2023-11-29 and 2.1.6 dated 2025-09-24
DESCRIPTION | 18 MD5 | 136 - NAMESPACE | 80 - NEWS.md | 7 R/ashdog.R | 2524 ++++++++++++++++++------------------ R/data.R | 98 - R/multidog.R | 1564 +++++++++++----------- R/oracle.R | 596 ++++---- R/plot_geno.R | 396 ++--- R/pp.R | 876 ++++++------ R/rflexdog.R | 622 ++++---- R/updog.R | 216 --- README.md | 298 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 88 - inst/doc/multidog.R | 20 inst/doc/multidog.Rmd | 274 +-- inst/doc/multidog.html | 418 +++-- inst/doc/oracle_calculations.Rmd | 266 +-- inst/doc/oracle_calculations.html | 282 ++-- inst/doc/simulate_ngs.Rmd | 248 +-- inst/doc/simulate_ngs.html | 404 ++--- inst/doc/smells_like_updog.Rmd | 214 +-- inst/doc/smells_like_updog.html | 331 ++-- man/betabinom.Rd | 180 +- man/filter_snp.Rd | 86 - man/flexdog.Rd | 710 +++++----- man/flexdog_full.Rd | 784 +++++------ man/format_multidog.Rd | 54 man/get_q_array.Rd | 74 - man/is.flexdog.Rd | 50 man/is.multidog.Rd | 50 man/log_sum_exp.Rd | 42 man/log_sum_exp_2.Rd | 44 man/multidog.Rd | 454 +++--- man/oracle_cor.Rd | 136 - man/oracle_cor_from_joint.Rd | 100 - man/oracle_joint.Rd | 170 +- man/oracle_mis.Rd | 142 +- man/oracle_mis_from_joint.Rd | 96 - man/oracle_mis_vec.Rd | 142 +- man/oracle_mis_vec_from_joint.Rd | 104 - man/oracle_plot.Rd | 92 - man/plot.flexdog.Rd | 92 - man/plot.multidog.Rd | 78 - man/plot_geno.Rd | 192 +- man/rflexdog.Rd | 148 +- man/rgeno.Rd | 184 +- man/snpdat.Rd | 70 man/uitdewilligen.Rd | 66 man/updog-package.Rd | 113 - man/wem.Rd | 102 - src/gradients.cpp | 6 src/objective.cpp | 6 tests/testthat.R | 16 tests/testthat/test_dbetabinom.R | 211 --- tests/testthat/test_f1_genotyping.R | 78 - tests/testthat/test_flexdog.R | 415 ++--- tests/testthat/test_gradients.R | 494 +++---- tests/testthat/test_objectives.R | 307 ++-- tests/testthat/test_oracle.R | 322 ++-- tests/testthat/test_rflexdog.R | 54 tests/testthat/test_utils.R | 124 - tests/testthat/test_wikmat.R | 42 vignettes/multidog.Rmd | 274 +-- vignettes/oracle_calculations.Rmd | 266 +-- vignettes/simulate_ngs.Rmd | 248 +-- vignettes/smells_like_updog.Rmd | 214 +-- 69 files changed, 8706 insertions(+), 8902 deletions(-)
Title: Statistical Process Control -- Calculation of ARL and Other
Control Chart Performance Measures
Description: Evaluation of control charts by means of
the zero-state, steady-state ARL (Average Run Length) and RL quantiles.
Setting up control charts for given in-control ARL. The control charts
under consideration are one- and two-sided EWMA, CUSUM, and
Shiryaev-Roberts schemes for monitoring the mean or variance of normally
distributed independent data. ARL calculation of the same set of schemes under drift (in the mean) are added.
Eventually, all ARL measures for the multivariate EWMA (MEWMA) are provided.
Author: Sven Knoth [aut, cre]
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>
Diff between spc versions 0.7.1 dated 2024-08-27 and 0.7.2 dated 2025-09-24
DESCRIPTION | 8 MD5 | 24 R/pois.ewma.ad.R | 4 R/pois.ewma.arl.R | 3 R/pois.ewma.crit.R | 7 man/pois.ewma.ad.Rd | 7 man/pois.ewma.arl.Rd | 5 man/pois.ewma.crit.Rd | 5 src/allspc.c |50582 ++++++++++++++++++++++++++------------------------ src/cewma_ad_be.c | 32 src/cewma_arl_be.c | 63 src/cewma_crit_be.c | 100 src/spc_init.c | 300 13 files changed, 27484 insertions(+), 23656 deletions(-)
Title: Linear Networks Functionality of the 'spatstat' Family
Description: Defines types of spatial data on a linear network
and provides functionality for geometrical operations,
data analysis and modelling of data on a linear network,
in the 'spatstat' family of packages.
Contains definitions and support for linear networks, including creation of networks, geometrical measurements, topological connectivity, geometrical operations such as inserting and deleting vertices, intersecting a network with another object, and interactive editing of networks.
Data types defined on a network include point patterns, pixel images, functions, and tessellations.
Exploratory methods include kernel estimation of intensity on a network, K-functions and pair correlation functions on a network, simulation envelopes, nearest neighbour distance and empty space distance, relative risk estimation with cross-validated bandwidth selection. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Mont [...truncated...]
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Greg McSwiggan [aut, cph],
Tilman Davies [ctb, cph],
Mehdi Moradi [ctb, cph],
Suman Rakshit [ctb, cph],
Ottmar Cronie [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.linnet versions 3.3-1 dated 2025-07-24 and 3.3-2 dated 2025-09-24
DESCRIPTION | 16 ++++++++-------- MD5 | 28 ++++++++++++++-------------- NEWS | 16 ++++++++++++++++ R/linearJinhom.R | 3 ++- R/linearK.R | 5 ++++- R/linearKeuclid.R | 6 +++++- R/linearKmulti.R | 9 ++++++++- R/linearmrkcon.R | 4 +++- R/linearpcf.R | 5 ++++- R/linearpcfmulti.R | 9 ++++++++- R/lintess.R | 6 ++++-- R/lpp.R | 1 + R/lppm.R | 4 ++-- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + 15 files changed, 81 insertions(+), 33 deletions(-)
More information about spatstat.linnet at CRAN
Permanent link
Title: R to Symbolic Data Analysis
Description: Symbolic Data Analysis (SDA) was proposed by professor Edwin Diday in 1987, the main purpose of SDA is to substitute the set of rows (cases) in the data table for a concept (second order statistical unit). This package implements, to the symbolic case, certain techniques of automatic classification, as well as some linear models.
Author: Oldemar Rodriguez [aut, cre],
Jose Emmanuel Chacon [cph],
Carlos Aguero [cph],
Jorge Arce [cph]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between RSDA versions 3.2.4 dated 2025-06-02 and 3.2.5 dated 2025-09-24
DESCRIPTION | 9 MD5 | 14 NAMESPACE | 1 R/sym_regression.R | 1391 ++++---- build/vignette.rds |binary inst/doc/introduction.R | 1024 +++--- inst/doc/introduction.html | 7574 ++++++++++++++++++++++----------------------- man/RSDA.Rd | 4 8 files changed, 5030 insertions(+), 4987 deletions(-)
Title: Solving Ordinary Differential Equations to Understand
Luminescence
Description: A collection of functions to simulate luminescence signals in quartz and Al2O3 based on published models.
Author: Johannes Friedrich [aut, trl, cre] ,
Sebastian Kreutzer [aut, ths] ,
Christoph Schmidt [aut, ths]
Maintainer: Johannes Friedrich <johannes.friedrich@posteo.de>
Diff between RLumModel versions 0.2.10 dated 2022-02-21 and 0.2.11 dated 2025-09-24
DESCRIPTION | 29 ++++++++-------- MD5 | 52 ++++++++++++++-------------- NEWS.md | 40 ++-------------------- R/RLumModel-package.R | 3 - R/extract_pars.R | 2 - R/read_SEQ2R.R | 29 ++++++++-------- R/simulate_CW_OSL.R | 16 ++++---- R/simulate_LM_OSL.R | 10 ++--- R/simulate_RF.R | 30 ++++++++-------- R/simulate_RF_and_heating.R | 10 ++--- R/simulate_TL.R | 6 +-- R/simulate_heating.R | 16 ++++---- R/simulate_illumination.R | 4 -- R/simulate_irradiation.R | 4 +- R/simulate_pause.R | 34 +++++++++--------- R/translate_sequence.R | 2 - README.md | 53 ++++++++++++++--------------- build/vignette.rds |binary inst/extdata/example_SAR_cycle.SEQ | 56 +++++++++++++++---------------- man/RLumModel-package.Rd | 19 ++++++++++ man/dot-set_pars.Rd | 2 - man/figures/README-unnamed-chunk-4-1.png |binary man/model_LuminescenceSignals.Rd | 2 - man/read_SEQ2R.Rd | 26 +++++++------- man/trace_ParameterStateEvolution.Rd | 2 - src/Makevars | 2 - src/Makevars.win | 2 - 27 files changed, 216 insertions(+), 235 deletions(-)
Title: Tools for Matrix Algebra, Optimization and Inference
Description: Matrix is an universal and sometimes primary object/unit in applied mathematics and statistics. We provide a number of algorithms for selected problems in optimization and statistical inference. For general exposition to the topic with focus on statistical context, see the book by Banerjee and Roy (2014, ISBN:9781420095388).
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between maotai versions 0.2.6 dated 2025-02-27 and 0.2.7 dated 2025-09-24
DESCRIPTION | 10 +- MD5 | 41 ++++++--- NAMESPACE | 8 + NEWS.md | 3 R/LEiDA.R |only R/RcppExports.R | 44 ++++++++++ R/WLbarycenter.R | 5 - R/WLmedian.R |only R/aux_checkers.R | 23 +++++ R/aux_ecdf.R | 5 - R/ecdfdist.R | 84 ++++++++++++++++++-- R/ecdfdistS.R |only R/movMF_reduce_partitional.R | 23 ++++- R/package-maotai.R | 5 - build/partial.rdb |binary man/LEiDA.Rd |only man/WLmedian.Rd |only man/ecdfdist.Rd | 14 ++- man/ecdfdistS.Rd |only src/RcppExports.cpp | 149 ++++++++++++++++++++++++++++++++++++ src/cpp_WLvMF.cpp | 55 ++++++++----- src/cpp_casket.cpp | 4 src/cpp_ecdf.cpp |only src/cpp_ecdf_sample_regular.cpp |only src/cpp_ecdf_sample_wasserstein.cpp |only src/src_computations.cpp | 49 +++++++++++ 26 files changed, 455 insertions(+), 67 deletions(-)
Title: Data Sets from "Lectures on Econometrics" by Chirok Han
Description: Data sets for Chirok Han (2024, ISBN:979-11-303-1964-3,
"Lectures on Econometrics"). Students, teachers, and self-learners will
find the data sets essential for replicating the results in the book.
Author: Chirok Han [aut, cre, cph]
Maintainer: Chirok Han <chirokhan@korea.ac.kr>
Diff between loedata versions 1.0.1 dated 2022-11-16 and 1.1 dated 2025-09-24
loedata-1.0.1/loedata/build |only loedata-1.1/loedata/DESCRIPTION | 11 ++-- loedata-1.1/loedata/MD5 | 74 ++++++++++++++++---------------- loedata-1.1/loedata/NEWS.md | 15 ++++++ loedata-1.1/loedata/R/data.R | 57 ++++++++++-------------- loedata-1.1/loedata/README.md |only loedata-1.1/loedata/data/Boyle.rda |binary loedata-1.1/loedata/data/Death.rda |binary loedata-1.1/loedata/data/Ekc.rda |binary loedata-1.1/loedata/data/Fastfood.rda |binary loedata-1.1/loedata/data/Firmdata.rda |binary loedata-1.1/loedata/data/Galtonpar.rda |binary loedata-1.1/loedata/data/Hcons.rda |binary loedata-1.1/loedata/data/Hies.rda |binary loedata-1.1/loedata/data/Hmda.rda |binary loedata-1.1/loedata/data/Ivdata.rda |binary loedata-1.1/loedata/data/Klips.rda |binary loedata-1.1/loedata/data/Klosa.rda |binary loedata-1.1/loedata/data/Ksalary.rda |binary loedata-1.1/loedata/data/Pubserv.rda |binary loedata-1.1/loedata/data/Regko.rda |binary loedata-1.1/loedata/data/RegkoPanel.rda |binary loedata-1.1/loedata/man/Boyle.Rd | 3 - loedata-1.1/loedata/man/Death.Rd | 3 - loedata-1.1/loedata/man/Ekc.Rd | 5 -- loedata-1.1/loedata/man/Fastfood.Rd | 5 -- loedata-1.1/loedata/man/Firmdata.Rd | 3 - loedata-1.1/loedata/man/Galtonpar.Rd | 5 -- loedata-1.1/loedata/man/Hcons.Rd | 3 - loedata-1.1/loedata/man/Hies.Rd | 3 - loedata-1.1/loedata/man/Hmda.Rd | 6 +- loedata-1.1/loedata/man/Ivdata.Rd | 3 - loedata-1.1/loedata/man/Klips.Rd | 5 -- loedata-1.1/loedata/man/Klosa.Rd | 5 -- loedata-1.1/loedata/man/Ksalary.Rd | 3 - loedata-1.1/loedata/man/Pubserv.Rd | 3 - loedata-1.1/loedata/man/Regko.Rd | 13 +++-- loedata-1.1/loedata/man/RegkoPanel.Rd | 15 +++--- loedata-1.1/loedata/man/loedata.Rd | 6 +- 39 files changed, 112 insertions(+), 134 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs),
distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate
Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and
maximum product spacings estimation are available. Right-tail and left-tail LM censoring
by threshold or indicator variable are available. LMs of residual (resid) and reversed
(rev) residual life are implemented along with 13 quantile operators for reliability analyses.
Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available.
Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added
(+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L],
Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp
Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L],
Gen Pareto [L+RC, TL], Govindara [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.5.1 dated 2024-05-04 and 2.5.3 dated 2025-09-24
DESCRIPTION | 16 ++++++++---- MD5 | 58 ++++++++++++++++++++++++++++++++++------------- NAMESPACE | 5 ++++ NEWS | 11 ++++++++ R/are.pargdd.valid.R |only R/cdfben.R |only R/cdfgdd.R |only R/is.gdd.R |only R/lmomben.R |only R/lmomgdd.R |only R/lmrdia46.R | 12 +++++++++ R/pargdd.R |only R/pdfgdd.R |only R/plotlmrdia.R | 13 ++++++++-- R/plotlmrdia46.R | 25 ++++++++++++++++++-- R/pmfben.R |only R/pp.stable.R |only R/prettydist.R | 1 R/quaben.R |only R/quagdd.R |only build/partial.rdb |binary inst/doc/benford |only inst/doc/t4t6/tau4tau6.R | 9 ++++--- man/are.pargdd.valid.Rd |only man/cdfben.Rd |only man/cdfgdd.Rd |only man/cdfpdq3.Rd | 2 - man/cdfpdq4.Rd | 2 - man/is.gdd.Rd |only man/lmomben.Rd |only man/lmomgdd.Rd |only man/pargdd.Rd |only man/pdfgdd.Rd |only man/pdfpdq3.Rd | 2 - man/pdfpdq4.Rd | 2 - man/plotlmrdia46.Rd | 13 +++++----- man/pmfben.Rd |only man/quaben.Rd |only man/quagdd.Rd |only man/quapdq3.Rd | 4 +-- man/quapdq4.Rd | 6 ++-- 41 files changed, 137 insertions(+), 44 deletions(-)
Title: Gibbs Random Fields Analysis
Description: Allows calculation on, and
sampling from Gibbs Random Fields, and more precisely general
homogeneous Potts model. The primary tool is the exact computation of
the intractable normalising constant for small rectangular lattices.
Beside the latter function, it contains method that give exact sample from the likelihood
for small enough rectangular lattices or approximate sample from the
likelihood using MCMC samplers for large lattices.
Author: Julien Stoehr [aut, cre],
Pierre Pudlo [aut],
Nial Friel [aut]
Maintainer: Julien Stoehr <stoehr@ceremade.dauphine.fr>
Diff between GiRaF versions 1.0.1 dated 2020-10-14 and 1.0.2 dated 2025-09-24
DESCRIPTION | 22 ++- MD5 | 17 +- NAMESPACE | 3 build/vignette.rds |binary inst/doc/GiRaF_introduction.R | 234 ++++++++++++++++++++-------------------- inst/doc/GiRaF_introduction.pdf |binary man/GiRaF-package.Rd | 48 ++++---- src/Makevars | 3 src/Makevars.win | 3 src/RcppExports.cpp |only 10 files changed, 165 insertions(+), 165 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] ,
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] ,
Emanuel Huber [ctb] ,
Florian Prive [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 7.0.2 dated 2024-03-28 and 7.0.4 dated 2025-09-24
DESCRIPTION | 9 MD5 | 77 ++-- NEWS.md | 132 ++++---- R/error_plot.R | 108 ++++-- R/euler.R | 30 + R/eulerr_options.R | 36 +- R/fit_diagram.R | 128 ++++---- R/geometry.R | 3 R/layout.R | 48 +-- R/parse_input.R | 88 +++-- R/plot.euler.R | 544 +++++++++++++++++++---------------- R/print.euler.R | 46 +- R/setup_geometry.R | 75 ++-- R/setup_grobs.R | 72 ++-- R/tag-grobs.R | 16 - R/utils.R | 6 R/venn.R | 103 +++--- R/zzz.R | 6 README.md | 35 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 52 --- inst/WORDLIST | 7 inst/doc/gallery.html | 25 - inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 28 - inst/doc/loss-functions.html | 8 inst/doc/under-the-hood.html | 17 - inst/doc/venn-diagrams.html | 13 inst/doc/visualization.html | 10 man/figures/README-plot_method-1.png |binary man/figures/logo.svg |only src/intersections.cpp | 2 tests/spelling.R | 9 tests/testthat/test-accuracy.R | 36 +- tests/testthat/test-geometry.R | 28 + tests/testthat/test-inputs.R | 26 - tests/testthat/test-montecarlo.R | 11 tests/testthat/test-plotting.R | 59 ++- vignettes/introduction.Rmd | 2 40 files changed, 1057 insertions(+), 840 deletions(-)
Title: Interior Point Conic Optimization Solver
Description: A versatile interior point solver that solves linear programs (LPs), quadratic programs (QPs), second-order cone programs (SOCPs), semidefinite programs (SDPs), and problems with exponential and power cone constraints (<https://clarabel.org/stable/>). For quadratic objectives, unlike interior point solvers based on the standard homogeneous self-dual embedding (HSDE) model, Clarabel handles quadratic objective without requiring any epigraphical reformulation of its objective function. It can therefore be significantly faster than other HSDE-based solvers for problems with quadratic objective functions. Infeasible problems are detected using using a homogeneous embedding technique.
Author: Balasubramanian Narasimhan [aut, cre],
Paul Goulart [aut, cph],
Yuwen Chen [aut],
Hiroaki Yutani [ctb] ,
David Zimmermann-Kollenda [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between clarabel versions 0.10.1 dated 2025-04-17 and 0.11.1 dated 2025-09-24
DESCRIPTION | 12 +- MD5 | 29 +++-- NEWS.md | 9 + R/clarabel.R | 11 +- build/vignette.rds |binary cleanup |only configure | 4 inst/tinytest/test_api_dimension.R | 12 ++ man/clarabel.Rd | 2 man/clarabel_control.Rd | 6 + src/Makevars.in | 3 src/rust/Cargo.lock | 184 +++++++++++++++++++++---------------- src/rust/Cargo.toml | 11 +- src/rust/cargo_vendor_config.toml | 5 - src/rust/src/lib.rs | 20 +++- src/rust/vendor.tar.xz |binary 16 files changed, 192 insertions(+), 116 deletions(-)
Title: Cause-Specific Framework for Competing-Risk Analysis
Description: Numerical integration of cause-specific survival curves to arrive at cause-specific cumulative incidence functions,
with three usage modes: 1) Convenient API for parametric survival regression followed by competing-risk analysis, 2) API for
CFC, accepting user-specified survival functions in R, and 3) Same as 2, but accepting survival functions in C++. For
mathematical details and software tutorial, see Mahani and Sharabiani (2019) <DOI:10.18637/jss.v089.i09>.
Author: Mansour T.A. Sharabiani [aut],
Alireza S. Mahani [aut, cre]
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between CFC versions 1.2.0 dated 2023-01-09 and 1.2.1 dated 2025-09-24
ChangeLog | 4 ++++ DESCRIPTION | 26 +++++++++++++++++--------- MD5 | 10 +++++----- R/zzz.R | 2 +- man/cfc.tbasis.Rd | 2 +- src/cfc.cpp | 5 +++-- 6 files changed, 31 insertions(+), 18 deletions(-)
Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. The methods implemented include 'InterVA4' by Byass et al (2012) <doi:10.3402/gha.v5i0.19281>, 'InterVA5' by Byass at al (2019) <doi:10.1186/s12916-019-1333-6>, 'InSilicoVA' by McCormick et al (2016) <doi:10.1080/01621459.2016.1152191>, 'NBC' by Miasnikof et al (2015) <doi:10.1186/s12916-015-0521-2>, and a replication of 'Tariff' method by James et al (2011) <doi:10.1186/1478-7954-9-31> and Serina, et al. (2015) <doi:10.1186/s12916-015-0527-9>. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics. The 'NBC' method is implemented by the 'nbc4va' package that can be installed from <https://github.com/rrwen/nbc4va>. Note that this package was not developed by authors affiliated with the Institute for Health Metrics and Ev [...truncated...]
Author: Zehang Richard Li [aut, cre],
Jason Thomas [aut],
Tyler H. McCormick [aut],
Samuel J. Clark [aut]
Maintainer: Zehang Richard Li <lizehang@gmail.com>
Diff between openVA versions 1.1.2 dated 2024-01-29 and 1.2.0 dated 2025-09-24
DESCRIPTION | 37 ++++++++++++++----- MD5 | 55 ++++++++++++++++++++++------- NAMESPACE | 9 ++++ NEWS.md | 5 ++ R/CSMF.r | 4 ++ R/PrepCalibration.r |only R/VAmain.r | 40 +++++++++++++++++---- R/attach.r | 12 +++++- R/data.R |only R/notcore_utils.r |only R/stackplot.r | 8 ++-- R/update.r | 3 + build/vignette.rds |binary data |only inst/doc/eava-vignette.html |only inst/doc/eava-vignette.html.asis |only inst/doc/vacalibration-vignette.html |only inst/doc/vacalibration-vignette.html.asis |only man/DataEAVA.Rd |only man/NeonatesVA5.Rd |only man/RandomVA6.Rd |only man/codeVA.Rd | 21 +++++++---- man/csmf_eava.Rd |only man/getCCC.Rd | 2 - man/getIndivProb.Rd | 2 - man/getTopCOD.Rd | 2 - man/grouping_eava_child.Rd |only man/grouping_eava_neonate.Rd |only man/plot.eava.Rd |only man/plot.vacalibration.Rd |only man/prepCalibration.Rd |only man/print.eava.Rd |only man/print.eava_summary.Rd |only man/print.vacalibration.Rd |only man/print.vacalibration_summary.Rd |only man/summary.eava.Rd |only man/summary.vacalibration.Rd |only vignettes/eava-vignette.html.asis |only vignettes/vacalibration-vignette.html.asis |only 39 files changed, 156 insertions(+), 44 deletions(-)