Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, TTEST, FREQ, and UNIVARIATE. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.10.6 dated 2025-07-23 and 0.10.7 dated 2025-09-27
sasLM-0.10.6/sasLM/inst/doc/Report-Different-Simplest2410021412.pdf |only sasLM-0.10.6/sasLM/inst/doc/Report-NOT-OKs2410021413.pdf |only sasLM-0.10.6/sasLM/inst/doc/Validation-Report-GLM-2410021413.pdf |only sasLM-0.10.7/sasLM/DESCRIPTION | 6 +- sasLM-0.10.7/sasLM/MD5 | 22 +++++---- sasLM-0.10.7/sasLM/R/CumAlpha.R | 23 +++++----- sasLM-0.10.7/sasLM/R/OBFBound.R |only sasLM-0.10.7/sasLM/R/PocockBound.R | 11 ++-- sasLM-0.10.7/sasLM/inst/NEWS.Rd | 9 +++ sasLM-0.10.7/sasLM/inst/doc/Report-Different-Simplest2509281051.pdf |only sasLM-0.10.7/sasLM/inst/doc/Report-NOT-OKs2509281052.pdf |only sasLM-0.10.7/sasLM/inst/doc/Validation-Report-GLM-2509281053.pdf |only sasLM-0.10.7/sasLM/man/CumAlpha.Rd | 18 ++++--- sasLM-0.10.7/sasLM/man/OBFBound.Rd |only sasLM-0.10.7/sasLM/man/PocockBound.Rd | 6 ++ sasLM-0.10.7/sasLM/man/seqBound.Rd | 6 ++ 16 files changed, 62 insertions(+), 39 deletions(-)
Title: Bayesian Estimation of DINA Model
Description: Estimate the Deterministic Input, Noisy "And" Gate (DINA)
cognitive diagnostic model parameters using the Gibbs sampler described
by Culpepper (2015) <doi:10.3102/1076998615595403>.
Author: Steven Andrew Culpepper [aut, cph] ,
James Joseph Balamuta [aut, cre]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between dina versions 2.0.0 dated 2019-02-01 and 2.0.2 dated 2025-09-27
DESCRIPTION | 24 ++++++++++++------------ MD5 | 23 ++++++++++++----------- NEWS.md | 24 ++++++++++++++++++++++++ R/dina-est.R | 4 ++-- README.md | 28 ++++++++++------------------ build |only inst/CITATION | 15 ++++++++------- man/dina-package.Rd | 10 ++++------ man/dina.Rd | 4 ++-- src/Makevars | 3 --- src/Makevars.win | 3 --- src/RcppExports.cpp | 5 +++++ src/dina-estimation-routine.cpp | 6 +++--- 13 files changed, 82 insertions(+), 67 deletions(-)
Title: Build a Docker Image from a Directory or Project
Description: Simple utilities to generate a Dockerfile from a directory or
project, build the corresponding Docker image, and push the image to
DockerHub.
Author: Daniel Molitor [aut, cph, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between tugboat versions 0.1.1 dated 2024-12-17 and 0.1.3 dated 2025-09-27
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 15 +++++++++++++++ R/create.R | 8 ++++++-- R/dockerfile.R | 10 +++++----- README.md | 4 ++-- man/create.Rd | 6 +++++- tests/testthat/test-build.R | 29 +++++++++++++++++++++++------ tests/testthat/test-create.R | 7 ++++--- 9 files changed, 72 insertions(+), 31 deletions(-)
Title: Supplementary Item Response Theory Models
Description: Supplementary functions for item response models aiming
to complement existing R packages. The functionality includes among others
multidimensional compensatory and noncompensatory IRT models
(Reckase, 2009, <doi:10.1007/978-0-387-89976-3>),
MCMC for hierarchical IRT models and testlet models
(Fox, 2010, <doi:10.1007/978-1-4419-0742-4>),
NOHARM (McDonald, 1982, <doi:10.1177/014662168200600402>),
Rasch copula model (Braeken, 2011, <doi:10.1007/s11336-010-9190-4>;
Schroeders, Robitzsch & Schipolowski, 2014, <doi:10.1111/jedm.12054>),
faceted and hierarchical rater models (DeCarlo, Kim & Johnson, 2011,
<doi:10.1111/j.1745-3984.2011.00143.x>),
ordinal IRT model (ISOP; Scheiblechner, 1995, <doi:10.1007/BF02301417>),
DETECT statistic (Stout, Habing, Douglas & Kim, 1996,
<doi:10.1177/014662169602000403>), local structural equation modeling
(LSEM; Hildebrandt, Luedtke, Robitzsch, Sommer & Wilhelm, 2016,
<doi:10.1080/00273171.20 [...truncated...]
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 4.1-15 dated 2024-02-05 and 4.2-133 dated 2025-09-27
DESCRIPTION | 16 MD5 | 539 +++++++++--------- NAMESPACE | 3 R/IRT.anova.sirt.R |only R/IRT.expectedCounts.mirt.R | 8 R/IRT.mle.R | 4 R/RcppExports.R | 26 R/amh_plot.R | 9 R/anova_sirt.R | 42 - R/attach.environment.sirt.R | 18 R/automatic.recode.R | 4 R/brm.irf.R | 4 R/brm.sim.R | 7 R/btm.R | 16 R/categorize.R | 6 R/ccov.np.R | 15 R/ccov_np_compute_ccov_sum_score.R | 4 R/cfa_meas_inv.R | 4 R/class.accuracy.rasch.R | 8 R/conf.detect.R | 4 R/create.ccov.R | 4 R/data.prep.R | 16 R/data.recode.sirt.R | 4 R/data.wide2long.R | 18 R/decategorize.R | 6 R/detect.index.R | 14 R/dexppow.R | 3 R/dif.logisticregression.R | 67 +- R/dif.strata.variance.R | 9 R/dirichlet.simul.R | 4 R/dmlavaan_est_model.R | 5 R/dmlavaan_est_model_bread_matrix_score_derivatives.R | 9 R/dmlavaan_est_model_parameterTable.R | 7 R/dmlavaan_joint_parameterTable.R | 4 R/dmlavaan_se_bootstrap.R | 11 R/dmlavaan_se_sandwich.R | 6 R/eigenvalues.manymatrices.R | 14 R/equating.rasch.jackknife.R | 10 R/expl.detect.R | 22 R/f1d.irt.R | 4 R/fit.adisop.R | 16 R/fit.gradedresponse.R | 23 R/fit.gradedresponse_alg.R | 6 R/gom_em_calc_theta.R | 6 R/gom_em_est_b.R | 10 R/gom_em_est_covariance.R | 4 R/gom_em_est_lambda.R | 14 R/invariance.alignment.R | 150 ++++- R/invariance_alignment_cfa_config.R | 10 R/invariance_alignment_cfa_config_estimate.R | 10 R/invariance_alignment_proc_labels.R | 6 R/invariance_alignment_simulate.R | 18 R/likelihood_adjustment.R | 50 - R/likelihood_adjustment_aux.R | 6 R/linking.haberman.R | 6 R/linking.haberman.lq.R | 87 ++ R/linking.haebara.R | 10 R/linking.robust.R | 4 R/linking_2groups.R |only R/linking_2groups_haebara_fun.R |only R/linking_2groups_haebara_grad.R |only R/linking_2groups_numerical_gradient.R |only R/linking_2groups_power_loss.R |only R/linking_2groups_stocking_lord_fun.R |only R/linking_2groups_stocking_lord_grad.R |only R/linking_2groups_vector_with_names.R |only R/linking_haberman_als.R | 8 R/linking_haberman_als_residual_weights.R | 10 R/linking_haberman_als_vcov.R | 9 R/linking_haberman_compute_lts_mean.R | 8 R/linking_haberman_itempars_prepare.R | 6 R/linking_haberman_lq_pw_create_design.R |only R/linking_haberman_lq_pw_le.R |only R/linking_haberman_lq_pw_le_arrange_Vgamma.R |only R/linking_haberman_lq_pw_le_grad.R |only R/linking_haberman_lq_pw_le_hess_delta.R |only R/linking_haberman_lq_pw_le_hess_gamma.R |only R/linking_haebara_gradient_function_R.R | 6 R/linking_haebara_optim_function_R.R | 9 R/locpolycor.R |only R/locpolycor_est_polycor_itempair.R |only R/locpolycor_est_polycor_opt_fun.R |only R/locpolycor_est_thresh_grad_fun.R |only R/locpolycor_est_thresh_item.R |only R/locpolycor_est_thresh_opt_fun.R |only R/lq_fit.R | 49 + R/lsdm.R | 6 R/lsdm_est_logist_quant.R | 12 R/lsem.MGM.stepfunctions.R | 4 R/lsem.bootstrap.R | 9 R/lsem.estimate.R | 57 + R/lsem.permutationTest.R | 11 R/lsem.test.R | 32 - R/lsem_aggregate_statistics.R |only R/lsem_bootstrap_draw_bootstrap_sample.R | 22 R/lsem_estimate_proc_args.R | 12 R/lsem_fit_initial_model.R | 7 R/lsem_fit_initial_model_sufficient_statistics.R | 36 - R/lsem_fitsem.R | 42 - R/lsem_fitsem_compute_sufficient_statistics.R | 61 +- R/lsem_fitsem_joint_estimation_prepare_partable.R | 14 R/lsem_fitsem_raw_data_define_pseudo_weights.R | 4 R/lsem_group_moderator.R | 32 - R/lsem_local_weights.R | 94 ++- R/lsem_parameter_summary.R | 4 R/lsem_residualize.R | 134 +++- R/m_est.R | 12 R/mcmc.2pno.R | 4 R/mcmc.2pno_alg.R | 5 R/mcmc.2pnoh.R | 64 +- R/mcmc_3pno_testlet_draw_itempars.R | 27 R/mcmc_Rhat.R | 9 R/mcmc_WaldTest.R | 8 R/mcmc_as_formula.R | 6 R/mcmc_confint.R | 11 R/mcmc_derivedPars.R | 6 R/mcmc_plot.R | 9 R/mcmc_rename_define_symbols.R | 6 R/mcmc_rename_helper.R | 8 R/mcmc_rename_parameter_names.R | 6 R/mcmc_rename_undo_parameter_names.R | 4 R/mcmc_summary.R | 21 R/mcmc_summary_print_information_criteria.R | 18 R/mcmclist2coda.R | 4 R/mgsem.R | 4 R/mgsem_bdiag.R | 6 R/mgsem_cd_opt.R | 4 R/mgsem_create_index.R | 6 R/mgsem_duplication_matrix.R | 6 R/mgsem_evaluate_penalties.R | 6 R/mgsem_grad_fun.R | 6 R/mgsem_list_elements_est_total_implied.R | 4 R/mgsem_loglike_suffstat_derivative.R | 16 R/mgsem_opt_fun.R | 4 R/mgsem_output_proc_casewise_likelihood.R | 4 R/mgsem_output_proc_residuals.R | 4 R/mgsem_partable2model.R | 4 R/mgsem_proc_data.R | 4 R/mgsem_proc_model.R | 12 R/mgsem_proc_model_is_B.R | 4 R/mgsem_proc_model_partable_define_index.R | 6 R/mgsem_proc_model_update_penalties_matrix.R | 4 R/mgsem_proc_suffstat.R | 4 R/mgsem_suffstat_covariance_matrix.R | 13 R/mgsem_vcov_me.R | 8 R/mirt.specify.partable.R | 7 R/nedelsky.irf.R | 6 R/nedelsky.sim.R | 6 R/noharm.sirt.R | 4 R/noharm_sirt_efa_rotated_solution.R | 4 R/noharm_sirt_optim_function.R | 19 R/noharm_sirt_optim_function_R.R | 9 R/noharm_sirt_optim_gradient.R | 32 - R/noharm_sirt_optim_gradient_R.R | 11 R/noharm_sirt_optim_gradient_R_der_gamma_item.R | 21 R/noharm_sirt_optim_gradient_R_der_gamma_item_pair.R | 21 R/noharm_sirt_partable_extract_par.R | 4 R/noharm_sirt_partable_include_par.R | 6 R/noharm_sirt_preproc.R | 65 +- R/noharm_sirt_preproc_parameter_table_matrix.R | 9 R/noharm_sirt_preproc_pattern_matrix.R | 4 R/normal2.cw.R | 2 R/package_version_date.R | 6 R/parmsummary_extend.R | 17 R/pbivnorm2.R | 34 - R/rasch.copula3.R | 10 R/rasch.pairwise.itemcluster.R | 11 R/rasch_jml_update_b.R | 7 R/rasch_mirtlc_est_a.R | 11 R/rasch_pairwise_iterations.R | 4 R/rasch_pairwise_optimize.R | 7 R/rasch_pairwise_optimize_opt_fun_terms2.R | 10 R/resp_groupwise.R | 4 R/rexppow.R | 10 R/rm.facets.R | 37 - R/rm_determine_fixed_tau_parameters.R | 4 R/rm_facets_center_value_aggregate.R | 4 R/rm_facets_pp_mle.R | 5 R/rm_facets_pp_mle_calc_ll.R | 5 R/rm_numdiff_index.R | 14 R/rm_pcm_calcprobs.R | 8 R/rm_posterior.R | 4 R/rm_proc_create_pseudoraters.R | 8 R/rm_proc_data.R | 22 R/rm_smooth_distribution.R | 4 R/rm_trim_increments_mstep.R | 5 R/rmvn.R | 4 R/sia.sirt.R | 24 R/sia_sirt_remove_transitive.R | 6 R/sim.rasch.dep.R | 8 R/sim.raschtype.R | 6 R/sirt_EAP.R | 4 R/sirt_MAP.R | 4 R/sirt_add_list_elements.R | 4 R/sirt_logit_to_probs.R | 4 R/sirt_matrix_lower_to_upper.R | 4 R/sirt_max.R |only R/sirt_optimizer.R | 4 R/sirt_pem_collect_parameters.R | 4 R/sirt_pem_create_parameter_index.R | 4 R/sirt_rbind_fill.R | 6 R/sirt_rename_list_entry.R | 6 R/smirt_postproc.R | 33 - R/sqrt_diag.R | 13 R/sqrt_diag_positive.R |only R/summary.gom.em.R | 5 R/summary.lsem.R | 5 R/summary.lsem.permutationTest.R | 4 R/summary_round_helper.R | 4 R/tam2mirt_fix.R | 58 - R/tam2mirt_freed.R | 78 +- R/testlet.marginalized.R | 6 R/tetrachoric2.R | 44 - R/truescore.irt.R | 10 R/truescore_irt_irf.R | 6 R/unidim.csn.R | 8 R/wle.rasch.jackknife.R | 8 R/write.format2.R | 15 R/write.fwf2.R | 10 R/xxirt.R | 76 +- R/xxirt_EAP.R | 8 R/xxirt_classprobs_lca.R | 4 R/xxirt_classprobs_lca_init_par.R | 8 R/xxirt_compute_casewise_likelihood.R | 14 R/xxirt_compute_itemprobs.R | 28 R/xxirt_compute_likelihood.R | 20 R/xxirt_compute_posterior.R | 18 R/xxirt_compute_priorDistribution.R | 7 R/xxirt_compute_prior_Theta_from_x.R | 3 R/xxirt_compute_prob_item_from_x.R | 7 R/xxirt_createDiscItem.R | 11 R/xxirt_createItemList.R | 13 R/xxirt_createParTable.R | 19 R/xxirt_createThetaDistribution.R | 11 R/xxirt_data_proc.R | 10 R/xxirt_em_algorithm.R | 38 - R/xxirt_em_args_extract.R |only R/xxirt_hessian.R | 8 R/xxirt_ic.R | 13 R/xxirt_ic_compute_criteria.R | 16 R/xxirt_irf_lca_init_par.R | 6 R/xxirt_mstep_ThetaParameters.R | 32 - R/xxirt_mstep_itemParameters.R | 63 +- R/xxirt_mstep_itemParameters_evalPrior.R | 4 R/xxirt_newton_raphson.R | 68 +- R/xxirt_nr_grad_fun_R.R | 6 R/xxirt_nr_grad_fun_Rcpp.R | 52 + R/xxirt_nr_grad_fun_numapprox.R | 14 R/xxirt_nr_grad_fun_pml_casewise.R |only R/xxirt_nr_opt_fun_pml_casewise.R |only R/xxirt_nr_optim_fun.R | 27 R/xxirt_nr_pml_grad_fun.R |only R/xxirt_nr_pml_more_arguments.R |only R/xxirt_nr_pml_opt_fun.R |only R/xxirt_nr_pml_opt_fun_R.R |only R/xxirt_nr_pml_preproc_data.R |only R/xxirt_partable_extract_freeParameters.R | 2 R/xxirt_postproc_parameters.R | 16 R/xxirt_prepare_response_data.R | 6 R/xxirt_proc_ParTable.R | 10 R/xxirt_sandwich_pml.R |only R/xxirt_simulate.R | 10 R/xxirt_summary_parts.R | 24 build/partial.rdb |binary data/data.pisa2006Read.rda |only data/datalist | 1 inst/CITATION | 3 inst/NEWS | 40 + man/R2conquest.Rd | 4 man/data.pisa2006Read.Rd |only man/data.pisaMath.Rd | 4 man/invariance.alignment.Rd | 33 + man/linking.haberman.Rd | 48 + man/linking_2groups.Rd |only man/locpolycor.Rd |only man/lq_fit.Rd | 5 man/lsem.estimate.Rd | 15 man/lsem.test.Rd | 8 man/matrixfunctions.sirt.Rd | 5 man/xxirt.Rd | 275 +++++++++ man/xxirt_createParTable.Rd | 5 man/xxirt_createThetaDistribution.Rd | 5 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 123 +++- src/sirt_rcpp_invariance_alignment.cpp | 18 src/sirt_rcpp_polychoric2.cpp | 8 src/sirt_rcpp_rm_sdt.cpp | 27 src/sirt_rcpp_xxirt.cpp | 369 ++++++++++++ 289 files changed, 3292 insertions(+), 1725 deletions(-)
Title: Utility Functions for Forest Inventory and Silviculture
Description: Perform common dendrometry operations such as inventory preparing, and inventory data analysis.
Author: Adrian Cidre Gonzalez [aut, cre],
Aitor Vazquez Veloso [aut]
Maintainer: Adrian Cidre Gonzalez <adrian.cidre@gmail.com>
Diff between silviculture versions 0.1.0 dated 2025-05-29 and 0.2.0 dated 2025-09-27
silviculture-0.1.0/silviculture/R/biomass.R |only silviculture-0.1.0/silviculture/R/dendrometry-summary.R |only silviculture-0.1.0/silviculture/R/dendrometry.R |only silviculture-0.1.0/silviculture/R/globals.R |only silviculture-0.1.0/silviculture/R/inventory.R |only silviculture-0.1.0/silviculture/R/lidar.R |only silviculture-0.1.0/silviculture/R/volume.R |only silviculture-0.1.0/silviculture/man/Inventory.Rd |only silviculture-0.1.0/silviculture/man/SampleSize.Rd |only silviculture-0.1.0/silviculture/man/calc_dominant_height.Rd |only silviculture-0.2.0/silviculture/DESCRIPTION | 27 + silviculture-0.2.0/silviculture/MD5 | 156 +++++++--- silviculture-0.2.0/silviculture/NAMESPACE | 63 ++-- silviculture-0.2.0/silviculture/NEWS.md | 66 ++++ silviculture-0.2.0/silviculture/R/deprecated-funs.R |only silviculture-0.2.0/silviculture/R/inventory-summary.R |only silviculture-0.2.0/silviculture/R/metrics-lidar.R |only silviculture-0.2.0/silviculture/R/metrics-stand-density.R |only silviculture-0.2.0/silviculture/R/metrics-stand-level.R |only silviculture-0.2.0/silviculture/R/metrics-tree-level.R |only silviculture-0.2.0/silviculture/R/predict-biomass.R |only silviculture-0.2.0/silviculture/R/predict-height.R |only silviculture-0.2.0/silviculture/R/sample-size.R |only silviculture-0.2.0/silviculture/R/silviculture-package.R |only silviculture-0.2.0/silviculture/R/sysdata.rda |binary silviculture-0.2.0/silviculture/R/treatment-thinning.R |only silviculture-0.2.0/silviculture/R/utils-not-exported.R | 133 ++++++++ silviculture-0.2.0/silviculture/R/zzz.R | 25 + silviculture-0.2.0/silviculture/README.md | 5 silviculture-0.2.0/silviculture/build/partial.rdb |binary silviculture-0.2.0/silviculture/data/biomass_models.rda |binary silviculture-0.2.0/silviculture/data/inventory_samples.rda |binary silviculture-0.2.0/silviculture/inst |only silviculture-0.2.0/silviculture/man/calc_accumulated_trees.Rd |only silviculture-0.2.0/silviculture/man/calc_dominant_metric.Rd |only silviculture-0.2.0/silviculture/man/calc_n_cost.Rd |only silviculture-0.2.0/silviculture/man/calc_n_optimal.Rd |only silviculture-0.2.0/silviculture/man/calc_n_prop.Rd |only silviculture-0.2.0/silviculture/man/calc_n_simple.Rd | 48 +-- silviculture-0.2.0/silviculture/man/eq_biomass_cudjoe_2024.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_dieguez_aranda_2009.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_manrique_2017.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_menendez_2022.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_montero_2005.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_ruiz_peinado_2011.Rd |only silviculture-0.2.0/silviculture/man/eq_biomass_ruiz_peinado_2012.Rd |only silviculture-0.2.0/silviculture/man/eq_hd_vazquez_veloso_2025.Rd |only silviculture-0.2.0/silviculture/man/figures/lifecycle-deprecated.svg |only silviculture-0.2.0/silviculture/man/figures/lifecycle-experimental.svg |only silviculture-0.2.0/silviculture/man/figures/lifecycle-stable.svg |only silviculture-0.2.0/silviculture/man/figures/lifecycle-superseded.svg |only silviculture-0.2.0/silviculture/man/figures/logo.png |binary silviculture-0.2.0/silviculture/man/lid_fcov.Rd | 66 ++-- silviculture-0.2.0/silviculture/man/lid_lhdi.Rd | 58 +-- silviculture-0.2.0/silviculture/man/plot.Rd | 38 +- silviculture-0.2.0/silviculture/man/silv_basal_area.Rd | 108 +++--- silviculture-0.2.0/silviculture/man/silv_biomass.Rd | 142 ++++----- silviculture-0.2.0/silviculture/man/silv_density_hart.Rd |only silviculture-0.2.0/silviculture/man/silv_density_ntrees_ha.Rd |only silviculture-0.2.0/silviculture/man/silv_density_sdi.Rd |only silviculture-0.2.0/silviculture/man/silv_diametric_class.Rd | 90 ++--- silviculture-0.2.0/silviculture/man/silv_dominant_height.Rd | 118 +++---- silviculture-0.2.0/silviculture/man/silv_lorey_height.Rd | 87 ++--- silviculture-0.2.0/silviculture/man/silv_ntrees_ha.Rd | 85 ++--- silviculture-0.2.0/silviculture/man/silv_predict_biomass.Rd |only silviculture-0.2.0/silviculture/man/silv_predict_height.Rd |only silviculture-0.2.0/silviculture/man/silv_sample_size.Rd | 103 +++--- silviculture-0.2.0/silviculture/man/silv_sample_size_simple.Rd |only silviculture-0.2.0/silviculture/man/silv_sample_size_stratified.Rd |only silviculture-0.2.0/silviculture/man/silv_spacing_index.Rd | 98 +++--- silviculture-0.2.0/silviculture/man/silv_sqrmean_diameter.Rd | 84 ++--- silviculture-0.2.0/silviculture/man/silv_stand_basal_area.Rd |only silviculture-0.2.0/silviculture/man/silv_stand_dominant_diameter.Rd |only silviculture-0.2.0/silviculture/man/silv_stand_dominant_height.Rd |only silviculture-0.2.0/silviculture/man/silv_stand_lorey_height.Rd |only silviculture-0.2.0/silviculture/man/silv_stand_qmean_diameter.Rd |only silviculture-0.2.0/silviculture/man/silv_summary.Rd | 148 ++++----- silviculture-0.2.0/silviculture/man/silv_treatment_thinning.Rd |only silviculture-0.2.0/silviculture/man/silv_tree_basal_area.Rd |only silviculture-0.2.0/silviculture/man/silv_tree_dclass.Rd |only silviculture-0.2.0/silviculture/man/silv_tree_volume.Rd |only silviculture-0.2.0/silviculture/man/silv_volume.Rd | 104 +++--- silviculture-0.2.0/silviculture/man/silviculture-package.Rd |only 83 files changed, 1097 insertions(+), 755 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre2' (BSD license, see <https://github.com/PCRE2Project/pcre2/blob/master/LICENCE.md>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stephanie Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.6.8 dated 2025-07-17 and 0.6.9 dated 2025-09-27
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/vignette.html | 9 +++++---- src/cwb/cqp/parser.tab.c | 8 ++++---- 6 files changed, 22 insertions(+), 17 deletions(-)
Title: Spectral Data for Light-Emitting-Diodes
Description: Spectral emission data for some frequently used light emitting
diodes available as electronic components. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Shafiuddin Ahmed [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyLEDs versions 0.5.2 dated 2023-11-01 and 0.5.3 dated 2025-09-27
DESCRIPTION | 21 MD5 | 46 - NEWS.md | 10 R/led_brands.r | 5 R/leds-mspct.r | 46 + R/oo-maya-leds.r | 2 README.md | 294 +++-------- build/partial.rdb |binary build/vignette.rds |binary data/COB-dimming-mspct.rda |binary data/COB-reflectors-mspct.rda |binary data/leds-mspct.rda |binary inst/doc/userguide-0-r4p-introduction.Rmd | 158 +++--- inst/doc/userguide-0-r4p-introduction.html | 157 +++--- inst/doc/userguide-1-data-use.R | 12 inst/doc/userguide-1-data-use.Rmd | 50 + inst/doc/userguide-1-data-use.html | 748 ++++++++++++++--------------- man/figures/README-unnamed-chunk-1-1.png |binary man/led_brands.Rd | 12 man/led_colors.Rd | 20 man/leds.mspct.Rd | 47 + man/oo_maya_leds.Rd | 2 vignettes/userguide-0-r4p-introduction.Rmd | 158 +++--- vignettes/userguide-1-data-use.Rmd | 50 + 24 files changed, 936 insertions(+), 902 deletions(-)
More information about photobiologyLEDs at CRAN
Permanent link
Title: Correction of Preprocessed MS Data
Description: An 'R' implementation of the 'python' program Metabolomics Peak Analysis Computational Tool ('MPACT') (Robert M. Samples, Sara P. Puckett, and Marcy J. Balunas (2023) <doi:10.1021/acs.analchem.2c04632>). Filters in the package serve to address common errors in tandem mass spectrometry preprocessing, including: (1) isotopic patterns that are incorrectly split during preprocessing, (2) features present in solvent blanks due to carryover between samples, (3) features whose abundance is greater than user-defined abundance threshold in a specific group of samples, for example media blanks, (4) ions that are inconsistent between technical replicates, and (5) in-source fragment ions created during ionization before fragmentation in the tandem mass spectrometry workflow.
Author: Allison Mason [aut] ,
Gregory Johnson [aut] ,
Patrick Schloss [aut, cre, cph]
Maintainer: Patrick Schloss <pschloss@umich.edu>
This is a re-admission after prior archival of version 0.3.0 dated 2025-09-07
Diff between mpactr versions 0.3.0 dated 2025-09-07 and 0.3.1 dated 2025-09-27
DESCRIPTION | 9 - MD5 | 106 ++++++++++---------- NAMESPACE | 5 NEWS.md | 10 + R/filter_pactr-accessors.R | 12 ++ R/filters.R | 15 ++ R/import_data.R | 5 R/mpactR-package.R | 4 R/mpactr-accessors.R | 9 + R/peak_table_formatter.R | 20 ++- R/quality_control.R | 3 R/utils.R |only inst/doc/downstream_analyses.R | 3 inst/doc/downstream_analyses.Rmd | 4 inst/doc/downstream_analyses.html | 16 +-- inst/doc/mpactr.R | 10 + inst/doc/mpactr.Rmd | 14 +- inst/doc/mpactr.html | 63 +++--------- inst/doc/reference_semantics.R | 3 inst/doc/reference_semantics.Rmd | 5 man/filter_cv.Rd | 6 - man/filter_group.Rd | 3 man/filter_insource_ions.Rd | 3 man/filter_mispicked_ions.Rd | 3 man/filter_summary.Rd | 3 man/get_cv_data.Rd | 3 man/get_group_averages.Rd | 3 man/get_meta_data.Rd | 3 man/get_peak_table.Rd | 3 man/get_raw_data.Rd | 3 man/get_similar_ions.Rd | 3 man/import_data.Rd | 3 man/limit_cores.Rd |only man/qc_summary.Rd | 3 src/CvFilter.cpp | 18 +-- tests/testthat.R | 1 tests/testthat/exttestdata/cut_ions.csv | 138 +++++++++++++-------------- tests/testthat/test-data.R | 1 tests/testthat/test-filter_pactr-accessors.R | 14 +- tests/testthat/test-filter_pactr-class.R | 113 ++++++++-------------- tests/testthat/test-filter_pactr-methods.R | 101 ++++++++----------- tests/testthat/test-filters.R | 13 +- tests/testthat/test-import_data.R | 21 +--- tests/testthat/test-mpactr-accessors.R | 4 tests/testthat/test-mpactr-class.R | 9 - tests/testthat/test-mpactr-methods.R | 4 tests/testthat/test-pactr-class_cloning.R | 1 tests/testthat/test-peak_table_formatter.R | 9 + tests/testthat/test-qc_graph_pactr-class.R | 10 - tests/testthat/test-quality_control.R | 2 tests/testthat/test-statistics.R | 1 tests/testthat/test-summary-class.R | 1 vignettes/downstream_analyses.Rmd | 4 vignettes/mpactr.Rmd | 14 +- vignettes/reference_semantics.Rmd | 5 55 files changed, 467 insertions(+), 375 deletions(-)
Title: Exploratory Reduced Reparameterized Unified Model Estimation
Description: Perform a Bayesian estimation of the exploratory reduced
reparameterized unified model (ErRUM) described by Culpepper and Chen (2018)
<doi:10.3102/1076998618791306>.
Author: James Joseph Balamuta [aut, cre, cph] ,
Steven Andrew Culpepper [aut, cph] ,
Jeffrey A. Douglas [aut]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between errum versions 0.0.3 dated 2020-03-20 and 0.0.4 dated 2025-09-27
DESCRIPTION | 25 ++++++++++++------------- MD5 | 17 +++++++++-------- NEWS.md | 12 ++++++++++++ README.md | 10 +++++----- build |only inst/CITATION | 16 ++++++++-------- man/errum-package.Rd | 6 ++---- src/Makevars | 4 +++- src/Makevars.win | 4 +++- src/RcppExports.cpp | 5 +++++ 10 files changed, 59 insertions(+), 40 deletions(-)
Title: DiSTATIS Three Way Metric Multidimensional Scaling
Description: Implement DiSTATIS and CovSTATIS (three-way multidimensional scaling). DiSTATIS and CovSTATIS are used to analyze multiple distance/covariance matrices collected on the same set of observations. These methods are based on Abdi, H., Williams, L.J., Valentin, D., & Bennani-Dosse, M. (2012) <doi:10.1002/wics.198>.
Author: Derek Beaton [aut, ctb],
Ju-Chi Yu [aut, ctb],
Vincent Guillemot [aut, ctb],
Herve Abdi [aut, cre]
Maintainer: Herve Abdi <herve@utdallas.edu>
Diff between DistatisR versions 1.1.1 dated 2022-12-05 and 1.1.2 dated 2025-09-27
DistatisR-1.1.1/DistatisR/README.md |only DistatisR-1.1.2/DistatisR/DESCRIPTION | 21 ++- DistatisR-1.1.2/DistatisR/MD5 | 57 ++++------ DistatisR-1.1.2/DistatisR/R/BeersProjectiveMapping.R | 2 DistatisR-1.1.2/DistatisR/R/DistatisR-package.R | 7 - DistatisR-1.1.2/DistatisR/R/GraphDistatisRv.R | 2 DistatisR-1.1.2/DistatisR/R/WinesRankingRawData.R | 2 DistatisR-1.1.2/DistatisR/R/amariSorting.R | 4 DistatisR-1.1.2/DistatisR/R/computePartial4Groups.R | 9 - DistatisR-1.1.2/DistatisR/R/createCubeOfCovDis.R | 4 DistatisR-1.1.2/DistatisR/R/distatis.R | 26 ++++ DistatisR-1.1.2/DistatisR/R/list2CubeOfCov.R | 2 DistatisR-1.1.2/DistatisR/R/multiculturalSortingSpices.R | 2 DistatisR-1.1.2/DistatisR/R/projectVoc.R | 2 DistatisR-1.1.2/DistatisR/R/sortingWines.R | 6 - DistatisR-1.1.2/DistatisR/man/DistatisR-package.Rd | 4 DistatisR-1.1.2/DistatisR/man/GraphDistatisRv.Rd | 2 DistatisR-1.1.2/DistatisR/man/WinesRankingRawData.Rd | 2 DistatisR-1.1.2/DistatisR/man/amariSorting.Rd | 2 DistatisR-1.1.2/DistatisR/man/computePartial4Groups.Rd | 8 - DistatisR-1.1.2/DistatisR/man/createCubeOfCovDis.Rd | 2 DistatisR-1.1.2/DistatisR/man/distatis.Rd | 6 + DistatisR-1.1.2/DistatisR/man/list2CubeOfCovDis.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.F4voc.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.cubeOfCovDis.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.dataAmari.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.dataSortingSpices.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.dataSortingWines.Rd | 2 DistatisR-1.1.2/DistatisR/man/print.str_BeersProjectiveMapping.Rd | 2 DistatisR-1.1.2/DistatisR/man/sortingWines.Rd | 4 30 files changed, 110 insertions(+), 80 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.3.0 dated 2025-09-11 and 0.3.1 dated 2025-09-27
DESCRIPTION | 13 - MD5 | 60 +++--- NAMESPACE | 46 ++-- NEWS.md | 9 R/CopernicusMarine-package.r | 4 R/cms_cite_product.r | 48 ++-- R/cms_download_subset.r | 189 +++++++++++-------- R/cms_login.r | 250 ++++++++++++------------- R/cms_products_list.r | 216 ++++++++++----------- R/generics.r | 127 ++++++------ R/import.r | 2 README.md | 396 ++++++++++++++++++++-------------------- man/CopernicusMarine-package.Rd | 52 ++--- man/account.Rd | 88 ++++---- man/cms_cite_product.Rd | 66 +++--- man/cms_download_native.Rd | 166 ++++++++-------- man/cms_download_subset.Rd | 190 ++++++++++--------- man/cms_get_client_info.Rd | 56 ++--- man/cms_login.Rd | 68 +++--- man/cms_product_details.Rd | 70 +++---- man/cms_product_metadata.Rd | 60 +++--- man/cms_product_services.Rd | 74 +++---- man/cms_products_list.Rd | 90 ++++----- man/cms_wmts.Rd | 158 +++++++-------- tests/testthat.R | 10 - tests/testthat/helper.r | 38 +-- tests/testthat/test_dev.r | 52 ++--- tests/testthat/test_login.r | 74 +++---- tests/testthat/test_product.r | 146 +++++++------- tests/testthat/test_subset.r | 3 tests/testthat/test_wmts.r | 112 +++++------ 31 files changed, 1502 insertions(+), 1431 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Bayesian Mode Inference
Description: A two-step Bayesian approach for mode inference following
Cross, Hoogerheide, Labonne and van Dijk (2024) <doi:10.1016/j.econlet.2024.111579>).
First, a mixture distribution is fitted on the data using a sparse finite
mixture (SFM) Markov chain Monte Carlo (MCMC) algorithm. The number of
mixture components does not have to be known; the size of the mixture is
estimated endogenously through the SFM approach. Second, the modes of the
estimated mixture at each MCMC draw are retrieved using algorithms
specifically tailored for mode detection. These estimates are then used to
construct posterior probabilities for the number of modes, their locations
and uncertainties, providing a powerful tool for mode inference.
Author: Nalan Bastuerk [aut],
Jamie Cross [aut],
Peter de Knijff [aut],
Lennart Hoogerheide [aut],
Paul Labonne [aut, cre],
Herman van Dijk [aut]
Maintainer: Paul Labonne <labonnepaul@gmail.com>
Diff between BayesMultiMode versions 0.7.3 dated 2024-10-31 and 0.7.4 dated 2025-09-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/plot_methods.R | 42 +++++++++++++++++++++++++----------------- build/partial.rdb |binary 5 files changed, 36 insertions(+), 25 deletions(-)
More information about BayesMultiMode at CRAN
Permanent link
Title: Commodore Amiga File Format Handler
Description: Modern software often poorly support older file formats. This
package intends to handle many file formats that were native to the
antiquated Commodore Amiga machine. This package focuses on file types from
the older Amiga operating systems (<= 3.0). It will read and write specific
file formats and coerces them into more contemporary data.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between AmigaFFH versions 0.4.7 dated 2025-01-08 and 0.4.8 dated 2025-09-27
DESCRIPTION | 10 ++-- MD5 | 94 ++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 5 ++ R/iff.0.r | 1 man/AmigaBasic.Rd | 6 +- man/AmigaBasic.reserved.Rd | 8 +-- man/AmigaBasicBMAP-io.Rd | 12 ++--- man/AmigaBasicBMAP.Rd | 8 +-- man/AmigaBitmapFont.Rd | 4 - man/ExtractBasic.Rd | 8 +-- man/as.AmigaBasic.Rd | 10 ++-- man/as.AmigaBasicBMAP.Rd | 6 +- man/as.character.Rd | 8 +-- man/as.raw.Rd | 4 - man/availableFontSizes.Rd | 4 - man/c.Rd | 4 - man/check.names.AmigaBasic.Rd | 8 +-- man/colourToAmigaRaw.Rd | 4 - man/fontName.Rd | 4 - man/font_example.Rd | 4 - man/getAmigaBitmapFont.Rd | 4 - man/names.AmigaBasic.Rd | 8 +-- man/packBitmap.Rd | 4 - man/rasterToAmigaBitmapFont.Rd | 4 - man/rawToAmigaBasic.Rd | 8 +-- man/rawToAmigaBasicBMAP.Rd | 10 ++-- man/rawToAmigaBasicShape.Rd | 4 - man/rawToAmigaBitmapFont.Rd | 4 - man/rawToAmigaBitmapFontSet.Rd | 4 - man/rawToAmigaIcon.Rd | 4 - man/rawToHWSprite.Rd | 4 - man/rawToIFFChunk.Rd | 4 - man/rawToSysConfig.Rd | 4 - man/read.AmigaBasic.Rd | 10 ++-- man/read.AmigaBasicShape.Rd | 6 +- man/read.AmigaBitmapFont.Rd | 6 +- man/read.AmigaBitmapFontSet.Rd | 6 +- man/read.AmigaIcon.Rd | 6 +- man/read.SysConfig.Rd | 6 +- man/read.iff.Rd | 6 +- man/simpleAmigaIcon.Rd | 4 - man/write.AmigaBasic.Rd | 14 +++--- man/write.AmigaBasicShape.Rd | 4 - man/write.AmigaBitmapFont.Rd | 12 ++--- man/write.AmigaIcon.Rd | 6 +- man/write.SysConfig.Rd | 6 +- man/write.iff.Rd | 6 +- 48 files changed, 192 insertions(+), 185 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb] ,
David Fletcher [ctb] ,
Yan Ru Choo [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 5.2.4 dated 2025-06-13 and 5.3.0 dated 2025-09-27
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Title: Target Controlled Infusion (TCI)
Description: Implementation of target-controlled infusion algorithms for compartmental pharmacokinetic and pharmacokinetic-pharmacodynamic models. Jacobs (1990) <doi:10.1109/10.43622>; Marsh et al. (1991) <doi:10.1093/bja/67.1.41>; Shafer and Gregg (1993) <doi:10.1007/BF01070999>; Schnider et al. (1998) <doi:10.1097/00000542-199805000-00006>; Abuhelwa, Foster, and Upton (2015) <doi:10.1016/j.vascn.2015.03.004>; Eleveld et al. (2018) <doi:10.1016/j.bja.2018.01.018>.
Author: Ryan Jarrett [aut, cre]
Maintainer: Ryan Jarrett <ryantjarrett@gmail.com>
Diff between tci versions 0.2.0 dated 2022-08-15 and 0.2.1 dated 2025-09-27
DESCRIPTION | 15 ++-- MD5 | 29 ++++---- R/poppk_mods.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/custom.R | 2 inst/doc/custom.html | 148 +++++++++++++++++++++++---------------------- inst/doc/overview.R | 14 ++-- inst/doc/overview.html | 154 ++++++++++++++++++++++++----------------------- inst/doc/poppk.R | 12 +-- inst/doc/poppk.html | 150 +++++++++++++++++++++++---------------------- man/eleveld_pd.Rd | 4 - man/eleveld_pk.Rd | 4 - src/Makevars | 18 +++-- src/Makevars.win | 17 ++--- src/pk_cpp_functions.cpp | 2 16 files changed, 297 insertions(+), 274 deletions(-)
Title: Distances and Routes on Geographical Grids
Description: Provides classes and functions to calculate various
distance measures and routes in heterogeneous geographic
spaces represented as grids. The package implements measures
to model dispersal histories first presented by van Etten and
Hijmans (2010) <doi:10.1371/journal.pone.0012060>. Least-cost
distances as well as more complex distances based on (constrained)
random walks can be calculated. The distances implemented in
the package are used in geographical genetics, accessibility
indicators, and may also have applications in other fields of
geospatial analysis.
Author: Jacob van Etten [aut] ,
Kaue de Sousa [ctb] ,
Andrew Marx [cre, ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>
Diff between gdistance versions 1.6.4 dated 2023-06-19 and 1.6.5 dated 2025-09-27
DESCRIPTION | 14 - MD5 | 20 +- NEWS.md | 5 R/AAATransition-class.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Overview.R | 10 - inst/doc/Overview.html | 420 ++++++++++++++++++++++++++++------------------ man/Transition-classes.Rd | 2 man/gdistance.Rd | 2 vignettes/gdistance1.bib | 5 11 files changed, 289 insertions(+), 191 deletions(-)
Title: Bayesian Analysis of Networks of Binary and/or Ordinal Variables
Description: Bayesian variable selection methods for analyzing the structure of a Markov random field model for a network of binary and/or ordinal variables.
Author: Maarten Marsman [aut, cre] ,
Giuseppe Arena [ctb] ,
Karoline Huth [ctb] ,
Nikola Sekulovski [ctb] ,
Don van den Bergh [ctb]
Maintainer: Maarten Marsman <m.marsman@uva.nl>
Diff between bgms versions 0.1.4.2 dated 2024-12-05 and 0.1.6.0 dated 2025-09-27
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Title: Parallel Distance Matrix Computation using Multiple Threads
Description: A fast parallelized alternative to R's native 'dist' function to
calculate distance matrices for continuous, binary, and multi-dimensional
input matrices, which supports a broad variety of 41 predefined distance
functions from the 'stats', 'proxy' and 'dtw' R packages, as well as user-
defined functions written in C++. For ease of use, the 'parDist' function
extends the signature of the 'dist' function and uses the same parameter
naming conventions as distance methods of existing R packages. The package
is mainly implemented in C++ and leverages the 'RcppParallel' package to
parallelize the distance computations with the help of the 'TinyThread'
library. Furthermore, the 'Armadillo' linear algebra library is used for
optimized matrix operations during distance calculations. The curiously
recurring template pattern (CRTP) technique is applied to avoid virtual
functions, which improves the Dynamic Time Warping calculations while
the implementation stays flexible enough to support differe [...truncated...]
Author: Alexander Eckert [aut, cre],
Lucas Godoy [ctb],
Srikanth KS [ctb]
Maintainer: Alexander Eckert <info@alexandereckert.com>
Diff between parallelDist versions 0.2.6 dated 2022-02-03 and 0.2.7 dated 2025-09-27
DESCRIPTION | 7 +++---- MD5 | 28 ++++++++++++++-------------- R/parDist.R | 2 +- README.md | 38 +++++++++++++++++++++++++++++++++----- build/vignette.rds |binary inst/NEWS.Rd | 5 +++++ inst/doc/parallelDist.R | 2 +- inst/doc/parallelDist.Rnw | 12 ++++++------ inst/doc/parallelDist.pdf |binary man/parDist.Rd | 4 ++-- src/DistanceDTWGeneric.h | 2 +- src/Makevars | 2 -- src/Makevars.win | 2 -- vignettes/parallelDist.Rnw | 12 ++++++------ vignettes/parallelDist.bib | 6 +++--- 15 files changed, 75 insertions(+), 47 deletions(-)
Title: Data for Sunlight Spectra
Description: Data for the extraterrestrial solar spectral irradiance and ground
level solar spectral irradiance and irradiance. In addition data for
shade light under vegetation and irradiance time series from different
broadband sensors. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, trl, cre] ,
T. Matthew Robson [ctb] ,
Saara M. Hartiakinen [ctb] ,
Anders Lindfors [ctb],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologySun versions 0.5.0 dated 2024-04-01 and 0.5.1 dated 2025-09-27
DESCRIPTION | 31 +- MD5 | 55 ++-- NEWS.md | 16 + R/example.solar.irrad.data.r | 159 +++++++++++--- R/example.solar.spectra.data.r | 85 +++++++ README.md | 10 build/partial.rdb |binary build/vignette.rds |binary data/broad-band.rda |binary data/gap-mspct.rda |binary data/sun-elevation-spct.rda |only data/sun-hourly-ozone-spct.rda |only data/sun-hourly-spct.rda |binary data/sun-may-morning-spct.rda |binary data/sun-reference-mspct.rda |binary inst/doc/r4p-introduction.Rmd | 162 +++++++------- inst/doc/r4p-introduction.html | 164 +++++++------- inst/doc/user-guide.R | 16 - inst/doc/user-guide.Rmd | 21 + inst/doc/user-guide.html | 342 ++++++++++++++++--------------- man/figures/README-unnamed-chunk-1-1.png |binary man/four_days_1min.data.Rd |only man/gap.mspct.Rd | 7 man/irrad_Kipp.data.Rd | 33 ++ man/photobiologySun-package.Rd | 2 man/ppfd_BF.data.Rd | 40 ++- man/ppfd_LICOR.data.Rd | 37 ++- man/sun_elevation.spct.Rd |only man/sun_hourly_ozone.spct.Rd |only vignettes/r4p-introduction.Rmd | 162 +++++++------- vignettes/user-guide.Rmd | 21 + 31 files changed, 834 insertions(+), 529 deletions(-)
More information about photobiologySun at CRAN
Permanent link
Title: Cone Constrained Convex Problems
Description: Routines for solving convex optimization problems with cone constraints by means of interior-point methods. The implemented algorithms are partially ported from CVXOPT, a Python module for convex optimization (see <https://cvxopt.org> for more information).
Author: Bernhard Pfaff [aut, cre],
Lieven Vandenberghe [cph] ,
Martin Andersen [cph] ,
Joachim Dahl [cph]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between cccp versions 0.3-2 dated 2025-07-30 and 0.3-3 dated 2025-09-27
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- src/DCP.cpp | 2 +- src/DNL.cpp | 2 +- src/GPP.cpp | 2 +- src/RPP.cpp | 2 +- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Interface with the United Nations Comtrade API
Description: Interface with and extract data from the United Nations 'Comtrade'
API <https://comtradeplus.un.org/>. 'Comtrade' provides country level shipping
data for a variety of commodities, these functions allow for easy API query
and data returned as a tidy data frame.
Author: Paul Bochtler [aut, cre, cph] ,
Harriet Goers [aut],
Chris Muir [aut],
Alicia Schep [rev] ,
Rafael Hellwig [rev] ,
Ernest Guevarra [rev] ,
Nicholas Potter [rev] ,
Juergen Amann [ctb]
Maintainer: Paul Bochtler <paulbochtler.gh@gmail.com>
Diff between comtradr versions 1.0.3 dated 2024-11-15 and 1.0.4 dated 2025-09-27
DESCRIPTION | 23 +++++---- MD5 | 90 +++++++++++++++++++------------------- NEWS.md | 7 ++ R/data.R | 2 R/utils.R | 11 +++- R/zzz.R | 2 build/vignette.rds |binary data/country_codes.rda |binary data/ct_pretty_cols.rda |binary inst/WORDLIST | 6 ++ inst/doc/bulk_files.html | 5 +- inst/doc/caching.html | 5 +- inst/doc/comtradr.R | 4 - inst/doc/comtradr.Rmd | 4 - inst/doc/comtradr.html | 13 ++--- inst/doc/large_data.html | 5 +- inst/doc/transition.html | 7 +- inst/extdata/cmd_b4.rds |binary inst/extdata/cmd_b5.rds |binary inst/extdata/cmd_eb.rds |binary inst/extdata/cmd_eb02.rds |binary inst/extdata/cmd_eb10.rds |binary inst/extdata/cmd_eb10s.rds |binary inst/extdata/cmd_h0.rds |binary inst/extdata/cmd_h1.rds |binary inst/extdata/cmd_h2.rds |binary inst/extdata/cmd_h3.rds |binary inst/extdata/cmd_h4.rds |binary inst/extdata/cmd_h5.rds |binary inst/extdata/cmd_h6.rds |binary inst/extdata/cmd_hs.rds |binary inst/extdata/cmd_s1.rds |binary inst/extdata/cmd_s2.rds |binary inst/extdata/cmd_s3.rds |binary inst/extdata/cmd_s4.rds |binary inst/extdata/cmd_ss.rds |binary inst/extdata/customs.rds |binary inst/extdata/flow.rds |binary inst/extdata/list_of_datasets.rda |binary inst/extdata/mot.rds |binary inst/extdata/partner.rds |binary inst/extdata/reporter.rds |binary man/country_codes.Rd | 2 tests/testthat/test-.onload.R | 3 + tests/testthat/test-utils.R | 11 ++-- vignettes/comtradr.Rmd | 4 - 46 files changed, 116 insertions(+), 88 deletions(-)
Title: Continuous Norming
Description: A comprehensive toolkit for generating continuous test norms in
psychometrics and biometrics, and analyzing model fit. The package offers both
distribution-free modeling using Taylor polynomials and parametric modeling
using the beta-binomial and the 'Sinh-Arcsinh' distribution. Originally developed
for achievement tests, it is applicable to a wide range of mental, physical, or
other test scores dependent on continuous or discrete explanatory variables. The
package provides several advantages: It minimizes deviations from representativeness
in subsamples, interpolates between discrete levels of explanatory variables,
and significantly reduces the required sample size compared to conventional
norming per age group. cNORM enables graphical and analytical evaluation of
model fit, accommodates a wide range of scales including those with negative
and descending values, and even supports conventional norming. It generates
norm tables including confidence intervals. It also includes methods f [...truncated...]
Author: Alexandra Lenhard [aut] ,
Wolfgang Lenhard [cre, aut] ,
Sebastian Gary [aut],
WPS publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 3.4.1 dated 2025-05-11 and 3.5.0 dated 2025-09-27
DESCRIPTION | 14 +-- MD5 | 62 +++++++++----- NAMESPACE | 20 ++-- NEWS.md | 11 +- R/plot.R | 161 +++++++++++++++++++++++++++++++------- R/predict.R | 4 R/shash.R |only README.md | 25 +++++ build/vignette.rds |binary inst/doc/BetaBinomial.Rmd | 2 inst/doc/BetaBinomial.html | 17 ++-- inst/doc/ShaSh.R |only inst/doc/ShaSh.Rmd |only inst/doc/ShaSh.html |only inst/doc/WeightedRegression.html | 9 +- inst/doc/cNORM-Demo.html | 11 +- man/cnorm.shash.Rd |only man/compare.Rd | 16 ++- man/derivationTable.Rd | 1 man/diagnostics.shash.Rd |only man/dshash.Rd |only man/getNormCurve.Rd | 1 man/log_likelihood_shash.Rd |only man/normTable.Rd | 1 man/normTable.shash.Rd |only man/plot.cnormShaSh.Rd |only man/plotDensity.Rd | 3 man/predict.cnormBetaBinomial.Rd | 1 man/predict.cnormBetaBinomial2.Rd | 1 man/predict.cnormShaSh.Rd |only man/predictCoefficients_shash.Rd |only man/predictNorm.Rd | 1 man/predictRaw.Rd | 1 man/print.cnormShaSh.Rd |only man/pshash.Rd |only man/qshash.Rd |only man/rawTable.Rd | 1 man/rshash.Rd |only man/summary.cnormShaSh.Rd |only vignettes/BetaBinomial.Rmd | 2 vignettes/ShaSh.Rmd |only 41 files changed, 269 insertions(+), 96 deletions(-)
Title: Ordinal Relations
Description: Functions to handle ordinal relations reflected within the feature space. Those function allow to search for ordinal relations in multi-class datasets. One can check whether proposed relations are reflected in a specific feature representation. Furthermore, it provides functions to filter, organize and further analyze those ordinal relations.
Author: L Lausser [aut],
LM Schaefer [aut],
R Szekely [aut],
HA Kestler [aut, cre]
Maintainer: HA Kestler <hans.kestler@uni-ulm.de>
Diff between ORION versions 1.0.3 dated 2022-02-07 and 1.0.4 dated 2025-09-27
DESCRIPTION | 27 - MD5 | 50 - NAMESPACE | 103 ++- R/as.edgedataframe.R | 1 R/conf.R | 4 R/confusionTable.R | 4 R/dropSets.R | 3 R/dropSize.R | 1 R/dropThreshold.R | 2 R/esl_org-data.R | 2 R/groupwise.R | 4 R/keepSets.R | 1 R/keepSize.R | 3 R/keepThreshold.R | 3 R/package.R |only R/plot.R | 7 R/predictionMap.R | 12 R/print.R | 5 R/subcascades.R | 6 R/summary.R | 5 R/tunePareto.occ.R | 11 build/vignette.rds |binary inst/doc/ORION.R | 2 inst/doc/ORION.html | 1322 +++++++++++++++++++++++++++++++++----------------- man/ORION-package.Rd |only man/predictionMap.Rd | 4 man/tunePareto.occ.Rd | 6 27 files changed, 1044 insertions(+), 544 deletions(-)
Title: Detect Population Structure Within Phylogenetic Trees
Description: Algorithms for detecting population structure from the history of
coalescent events recorded in phylogenetic trees. This method classifies each
tip and internal node of a tree into disjoint sets characterized by similar
coalescent patterns.
Author: Erik Volz [aut, cre] ,
Fabricia F. Nascimento [ctb] ,
Vinicius B. Franceschi [ctb]
Maintainer: Erik Volz <erik.volz@gmail.com>
Diff between treestructure versions 0.1.0 dated 2020-02-17 and 0.7.0 dated 2025-09-27
treestructure-0.1.0/treestructure/R/treestructure.R |only treestructure-0.1.0/treestructure/inst/doc/structuredCoalescent.R |only treestructure-0.1.0/treestructure/inst/doc/structuredCoalescent.Rmd |only treestructure-0.1.0/treestructure/inst/doc/structuredCoalescent.html |only treestructure-0.1.0/treestructure/vignettes/structuredCoalescent.Rmd |only treestructure-0.7.0/treestructure/DESCRIPTION | 48 treestructure-0.7.0/treestructure/MD5 | 49 treestructure-0.7.0/treestructure/NAMESPACE | 4 treestructure-0.7.0/treestructure/R/addtips.R |only treestructure-0.7.0/treestructure/R/m13.R | 1067 ++++++---- treestructure-0.7.0/treestructure/R/treestructure-package.R |only treestructure-0.7.0/treestructure/build/vignette.rds |binary treestructure-0.7.0/treestructure/inst/Ebola_down_sampled_tree.rds |only treestructure-0.7.0/treestructure/inst/Makona_1610_genomes_2016-06-23.ml.tree |only treestructure-0.7.0/treestructure/inst/doc/supportValues.R |only treestructure-0.7.0/treestructure/inst/doc/supportValues.Rmd |only treestructure-0.7.0/treestructure/inst/doc/supportValues.html |only treestructure-0.7.0/treestructure/inst/doc/treestructure.R |only treestructure-0.7.0/treestructure/inst/doc/treestructure.Rmd |only treestructure-0.7.0/treestructure/inst/doc/treestructure.html |only treestructure-0.7.0/treestructure/inst/doc/updating_treestructure.R |only treestructure-0.7.0/treestructure/inst/doc/updating_treestructure.Rmd |only treestructure-0.7.0/treestructure/inst/doc/updating_treestructure.html |only treestructure-0.7.0/treestructure/inst/downsampled_tree_struc.rds |only treestructure-0.7.0/treestructure/inst/struc_plot_example.rds |only treestructure-0.7.0/treestructure/inst/treestructure.Rmd | 2 treestructure-0.7.0/treestructure/inst/trestruct_chindex.rds |only treestructure-0.7.0/treestructure/inst/trestruct_res.rds |only treestructure-0.7.0/treestructure/inst/trestruct_res_nobt.rds |only treestructure-0.7.0/treestructure/inst/tscl | 4 treestructure-0.7.0/treestructure/man/addtips.Rd |only treestructure-0.7.0/treestructure/man/plot.TreeStructure.Rd | 14 treestructure-0.7.0/treestructure/man/treestructure-package.Rd | 31 treestructure-0.7.0/treestructure/man/treestructure.test.Rd |only treestructure-0.7.0/treestructure/man/trestruct.Rd | 83 treestructure-0.7.0/treestructure/src/RcppExports.cpp | 5 treestructure-0.7.0/treestructure/vignettes/bib |only treestructure-0.7.0/treestructure/vignettes/supportValues.Rmd |only treestructure-0.7.0/treestructure/vignettes/treestructure.Rmd |only treestructure-0.7.0/treestructure/vignettes/updating_treestructure.Rmd |only 40 files changed, 883 insertions(+), 424 deletions(-)
Title: A Simple Author Handler for Scientific Writing
Description: Handles and formats author information in scientific writing
in 'R Markdown' and 'Quarto'. 'plume' provides easy-to-use and
flexible tools for inserting author data in 'YAML' as well as
generating author and contribution lists (among others) as strings
from tabular data.
Author: Arnaud Gallou [aut, cre, cph]
Maintainer: Arnaud Gallou <arangacas@gmail.com>
Diff between plume versions 0.2.5 dated 2024-09-02 and 0.3.0 dated 2025-09-27
DESCRIPTION | 13 MD5 | 178 +-- NAMESPACE | 30 NEWS.md | 64 + R/aaa.R | 85 - R/als.R | 19 R/as-lines.R |only R/checkers.R | 335 +++--- R/context-binder.R | 3 R/context-selectors.R | 26 R/credit-roles.R | 31 R/data-encyclopedists.R | 17 R/enumerate.R | 11 R/icon.R | 48 R/name-handler.R | 5 R/plm-symbols.R |only R/plm-template.R | 21 R/plume-handler.R | 195 +-- R/plume-package.R | 24 R/plume-quarto.R | 96 + R/plume.R | 205 ++- R/sequential.R | 10 R/set-default-names.R | 22 R/status-setter.R | 62 - R/utils-doc.R |only R/utils-list.R | 5 R/utils-plm.R | 8 R/utils-tbl.R | 41 R/utils.R | 112 +- R/yaml.R | 26 README.md | 34 inst/doc/comprehensive-affiliation-schema.R | 4 inst/doc/plume-workflow.R | 27 inst/doc/plume-workflow.Rmd | 18 inst/doc/plume-workflow.html | 88 - inst/doc/plume.R | 137 -- inst/doc/plume.Rmd | 163 +-- inst/doc/plume.html | 1289 ++++++++----------------- inst/doc/working-in-other-languages.R | 51 inst/doc/working-in-other-languages.Rmd | 55 - inst/doc/working-in-other-languages.html | 78 - man/Plume.Rd | 102 + man/PlumeHandler.Rd | 45 man/PlumeQuarto.Rd | 50 man/StatusSetter.Rd | 10 man/StatusSetterPlume.Rd | 11 man/StatusSetterPlumeQuarto.Rd | 24 man/as_lines.Rd |only man/credit_roles.Rd | 4 man/encyclopedists.Rd | 6 man/enumerate.Rd | 6 man/everyone.Rd | 17 man/icn_orcid.Rd |only man/orcid.Rd | 11 man/plm_symbols.Rd |only man/plm_template.Rd | 5 man/plume-package.Rd | 2 man/sequential.Rd | 5 man/set_default_names.Rd | 13 tests/testthat/_snaps/as-lines.md |only tests/testthat/_snaps/credit-roles.md | 2 tests/testthat/_snaps/defunct.md |only tests/testthat/_snaps/deprecated.md |only tests/testthat/_snaps/get-author-list.md | 21 tests/testthat/_snaps/get-contact-details.md | 22 tests/testthat/_snaps/get-contributions.md | 48 tests/testthat/_snaps/get-footnotes.md | 28 tests/testthat/_snaps/get-orcids.md | 24 tests/testthat/_snaps/icon.md | 24 tests/testthat/_snaps/initialize.md | 92 - tests/testthat/_snaps/plm-symbols.md |only tests/testthat/_snaps/plm-template.md | 21 tests/testthat/_snaps/sequential.md | 2 tests/testthat/_snaps/set-default-names.md | 69 - tests/testthat/_snaps/set-main-contributors.md | 8 tests/testthat/_snaps/set-status.md | 56 - tests/testthat/_snaps/to-yaml.md | 14 tests/testthat/helper-plume.R | 4 tests/testthat/test-as-lines.R |only tests/testthat/test-defunct.R |only tests/testthat/test-deprecated.R |only tests/testthat/test-get-author-list.R | 31 tests/testthat/test-get-contact-details.R | 4 tests/testthat/test-get-contributions.R | 37 tests/testthat/test-get-footnotes.R | 20 tests/testthat/test-get-orcids.R | 7 tests/testthat/test-icon.R | 18 tests/testthat/test-initialize.R | 124 +- tests/testthat/test-plm-symbols.R |only tests/testthat/test-plm-template.R | 15 tests/testthat/test-sequential.R | 4 tests/testthat/test-set-main-contributors.R | 12 tests/testthat/test-set-status.R | 53 - tests/testthat/test-to-yaml.R | 14 vignettes/plume-workflow.Rmd | 18 vignettes/plume.Rmd | 163 +-- vignettes/working-in-other-languages.Rmd | 55 - 97 files changed, 2283 insertions(+), 2674 deletions(-)
Title: Analysis of Elliptical Tubes Under the Relative Curvature
Condition
Description: Analysis of elliptical tubes with applications in biological modeling. The package is based on the references: Taheri, M., Pizer, S. M., & Schulz, J. (2024) "The Mean Shape under the Relative Curvature Condition." Journal of Computational and Graphical Statistics <doi:10.1080/10618600.2025.2535600> and arXiv <doi:10.48550/arXiv.2404.01043>. Mohsen Taheri Shalmani (2024) "Shape Statistics via Skeletal Structures", PhD Thesis, University of Stavanger, Norway <doi:10.13140/RG.2.2.34500.23685>. Key features include constructing discrete elliptical tubes, calculating transformations, validating structures under the Relative Curvature Condition (RCC), computing means, and generating simulations. Supports intrinsic and non-intrinsic mean calculations and transformations, size estimation, plotting, and random sample generation based on a reference tube. The intrinsic approach relies on the interior path of the original non-convex space, incorporating the RCC, while the no [...truncated...]
Author: Mohsen Taheri Shalmani [aut, cre] ,
Joern Schulz [aut],
Stephen M. Pizer [aut]
Maintainer: Mohsen Taheri Shalmani <MohsenTaheriShalmani@gmail.com>
Diff between ETRep versions 1.2.0 dated 2025-06-05 and 1.2.1 dated 2025-09-27
DESCRIPTION | 12 - MD5 | 29 ++-- NEWS | 15 +- R/ETRep_Display.R |only R/ETRep_Functions.R | 122 ++++++++++++++------ R/OnLoadFile.R |only build/partial.rdb |binary man/create_Elliptical_Tube.Rd | 9 - man/dot-etrep_open3d.Rd |only man/dot-etrep_show3d.Rd |only man/dot-onLoad.Rd |only man/intrinsic_Transformation_Elliptical_Tubes.Rd | 2 man/intrinsic_mean_tube.Rd | 4 man/nonIntrinsic_Transformation_Elliptical_Tubes.Rd | 2 man/nonIntrinsic_mean_tube.Rd | 4 man/plot_Elliptical_Tube.Rd | 5 man/simulate_etube.Rd | 17 +- man/tube_Surface_Mesh.Rd | 11 + 18 files changed, 160 insertions(+), 72 deletions(-)
Title: Multiple Testing for Hypotheses with Hierarchical or Group
Structure
Description: Performs multiple testing corrections that take specific structure
of hypotheses into account, as described in Sankaran & Holmes (2014)
<doi:10.18637/jss.v059.i13>.
Author: Kris Sankaran [aut, cre]
Maintainer: Kris Sankaran <ksankaran@wisc.edu>
This is a re-admission after prior archival of version 1.1.1 dated 2015-05-05
Diff between structSSI versions 1.1.1 dated 2015-05-05 and 1.2.0 dated 2025-09-27
structSSI-1.1.1/structSSI/R/Adaptive.GBH.R |only structSSI-1.1.1/structSSI/R/BuildEdgelist.R |only structSSI-1.1.1/structSSI/R/EstimatedHFDRControl.R |only structSSI-1.1.1/structSSI/R/FindRoot.R |only structSSI-1.1.1/structSSI/R/HypTreeJSON.R |only structSSI-1.1.1/structSSI/R/ListTreePval.R |only structSSI-1.1.1/structSSI/R/Oracle.GBH.R |only structSSI-1.1.1/structSSI/R/PlotHypTree.R |only structSSI-1.1.1/structSSI/R/SignificanceStars.R |only structSSI-1.1.1/structSSI/R/estimate.pi0.R |only structSSI-1.1.1/structSSI/R/gbh_definition.R |only structSSI-1.1.1/structSSI/R/hFDR.adjust.R |only structSSI-1.1.1/structSSI/R/hFDR.internal.R |only structSSI-1.1.1/structSSI/R/pi0.lsl.R |only structSSI-1.1.1/structSSI/R/pi0.tail.p.R |only structSSI-1.1.1/structSSI/R/pi0.tst.R |only structSSI-1.1.1/structSSI/R/stepUp.R |only structSSI-1.1.1/structSSI/R/treePValues.R |only structSSI-1.1.1/structSSI/R/tree_definition.R |only structSSI-1.1.1/structSSI/R/validHypothesesTree.R |only structSSI-1.1.1/structSSI/data/gtemp.txt |only structSSI-1.1.1/structSSI/man/GBH-class.Rd |only structSSI-1.1.1/structSSI/man/hypothesesTree.Rd |only structSSI-1.1.1/structSSI/man/structSSI-internal.Rd |only structSSI-1.1.1/structSSI/tests/testGBHProcedures.R |only structSSI-1.1.1/structSSI/tests/testHierarchicalMethods.R |only structSSI-1.2.0/structSSI/DESCRIPTION | 31 +- structSSI-1.2.0/structSSI/MD5 | 65 +--- structSSI-1.2.0/structSSI/NAMESPACE | 57 +-- structSSI-1.2.0/structSSI/R/chlamydiae.R |only structSSI-1.2.0/structSSI/R/gbh.R |only structSSI-1.2.0/structSSI/R/gbh_class.R |only structSSI-1.2.0/structSSI/R/hfdr.R |only structSSI-1.2.0/structSSI/R/hfdr_class.R |only structSSI-1.2.0/structSSI/R/hfdr_plot.R |only structSSI-1.2.0/structSSI/data/chlamydiae.rda |binary structSSI-1.2.0/structSSI/data/gtemp.txt.gz |only structSSI-1.2.0/structSSI/inst/CITATION | 17 - structSSI-1.2.0/structSSI/man/Adaptive.GBH.Rd | 176 +++++------- structSSI-1.2.0/structSSI/man/EstimatedHFDRControl.Rd | 76 +---- structSSI-1.2.0/structSSI/man/Oracle.GBH.Rd | 175 +++++------- structSSI-1.2.0/structSSI/man/PlotHypTree.Rd |only structSSI-1.2.0/structSSI/man/chlamydiae.Rd | 67 ++-- structSSI-1.2.0/structSSI/man/estimate.pi0.Rd | 201 +++++-------- structSSI-1.2.0/structSSI/man/gbh-class.Rd |only structSSI-1.2.0/structSSI/man/gtemp.Rd | 10 structSSI-1.2.0/structSSI/man/hFDR.adjust.Rd | 204 ++++++-------- structSSI-1.2.0/structSSI/man/hypothesisTree-class.Rd |only structSSI-1.2.0/structSSI/man/structSSI-package.Rd | 4 structSSI-1.2.0/structSSI/man/treePValues.Rd | 74 +---- structSSI-1.2.0/structSSI/tests/testthat |only structSSI-1.2.0/structSSI/tests/testthat.R |only 52 files changed, 506 insertions(+), 651 deletions(-)
More information about spuriouscorrelations at CRAN
Permanent link
Title: Configuration of Jupiter's Four Largest Satellites
Description: Calculate, plot and animate the configuration of Jupiter's four
largest satellites (known as Galilean satellites) for a given date and time
(UTC - Coordinated Universal Time).
The galsat() function returns numerical values of the satellites’ positions.
x – the apparent rectangular coordinate of the satellite with respect to the
center of Jupiter’s disk in the equatorial plane in the units of Jupiter’s
equatorial radius; X is positive toward the west,
y – the apparent rectangular coordinate of the satellite with respect to the
center of Jupiter’s disk from the equatorial plane in the units of Jupiter’s
equatorial radius; Y is positive toward the north.
For more details see Meeus (1988, ISBN 0-943396-22-0) "Astronomical Formulae
for Calculators".
The galsat_animate() function creates an animation of the Galilean
satellites' positions. You provide the starting time, duration, the time
step between frames, and the pause between frames.
The function delta_t() returns the value of delta-T in [...truncated...]
Author: Lech Jaszowski [aut, cre, cph]
Maintainer: Lech Jaszowski <lech.jaszowski@interia.pl>
Diff between galisats versions 2.0.2 dated 2025-09-11 and 2.2.0 dated 2025-09-27
DESCRIPTION | 13 +- MD5 | 27 ++++- NAMESPACE | 1 NEWS.md | 12 ++ R/galilean_satellites.R | 177 ++++++++++++++++++++++++++++++++++++-- README.md | 71 ++++++++++++--- man/figures/README-example-1.png |binary man/figures/README-example-10.png |only man/figures/README-example-11.png |only man/figures/README-example-12.png |only man/figures/README-example-13.png |only man/figures/README-example-2.png |only man/figures/README-example-3.png |only man/figures/README-example-4.png |only man/figures/README-example-5.png |only man/figures/README-example-6.png |only man/figures/README-example-7.png |only man/figures/README-example-8.png |only man/figures/README-example-9.png |only man/galsat.Rd | 20 +++- man/galsat_animate.Rd |only 21 files changed, 282 insertions(+), 39 deletions(-)
Title: Check-Fields and Check-Boxes for 'rmarkdown'
Description: Creates auto-grading check-fields and check-boxes for 'rmarkdown'
or 'quarto' HTML. It can be used in class, when teacher share materials
and tasks, so students can solve some problems and check their work. In
contrast to the 'learnr' package, the 'checkdown' package works serverlessly
without 'shiny'.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between checkdown versions 0.0.12 dated 2023-10-27 and 0.0.13 dated 2025-09-27
DESCRIPTION | 13 - MD5 | 16 - NEWS | 7 R/check_question.R | 18 +- build/vignette.rds |binary inst/doc/start_checkdown.R | 32 +-- inst/doc/start_checkdown.Rmd | 11 - inst/doc/start_checkdown.html | 348 ++++++++++++++++++++++++------------------ vignettes/start_checkdown.Rmd | 11 - 9 files changed, 258 insertions(+), 198 deletions(-)
Title: Choice Item Response Theory
Description: Jointly model the accuracy of cognitive responses and item choices
within a Bayesian hierarchical framework as described by Culpepper and
Balamuta (2015) <doi:10.1007/s11336-015-9484-7>. In addition, the package
contains the datasets used within the analysis of the paper.
Author: Steven Andrew Culpepper [aut, cph] ,
James Joseph Balamuta [aut, cph, cre]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between cIRT versions 1.3.2 dated 2022-02-21 and 1.3.3 dated 2025-09-27
DESCRIPTION | 22 MD5 | 25 - NEWS.md | 14 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 8 inst/doc/Estimating-the-Model-in-the-Paper.html | 453 +++++++++--------- inst/doc/Package-Overview.html | 66 +- inst/doc/Simulation-Study-with-cIRT.R | 442 ++++++++--------- inst/doc/Simulation-Study-with-cIRT.html | 595 ++++++++++++------------ man/cIRT-package.Rd | 3 src/Makevars | 3 src/Makevars.win | 3 src/project_source.cpp | 6 14 files changed, 862 insertions(+), 778 deletions(-)
Title: Bayesian Estimation of the Reduced Reparameterized Unified Model
with Gibbs Sampling
Description: Implementation of Gibbs sampling algorithm for Bayesian Estimation
of the Reduced Reparameterized Unified Model ('rrum'), described by
Culpepper and Hudson (2017) <doi: 10.1177/0146621617707511>.
Author: Steven Andrew Culpepper [aut, cph] ,
Aaron Hudson [aut, cph] ,
James Joseph Balamuta [aut, cph, cre]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between rrum versions 0.2.1 dated 2023-11-29 and 0.2.2 dated 2025-09-27
DESCRIPTION | 25 +++++++++++++------------ MD5 | 12 ++++++------ NEWS.md | 18 ++++++++++++------ README.md | 12 ++---------- build/partial.rdb |binary man/rrum-package.Rd | 1 - src/rRUM_Gibbs.cpp | 10 +++++----- 7 files changed, 38 insertions(+), 40 deletions(-)
Title: Ordinal Higher-Order Exploratory General Diagnostic Model for
Polytomous Data
Description: Perform a Bayesian estimation of the ordinal exploratory
Higher-order General Diagnostic Model (OHOEGDM) for Polytomous Data
described by Culpepper, S. A. and Balamuta, J. J. (2021) <doi:10.1080/00273171.2021.1985949>.
Author: Steven Andrew Culpepper [aut, cph] ,
James Joseph Balamuta [aut, cre, cph]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between ohoegdm versions 0.1.0 dated 2022-02-24 and 0.1.1 dated 2025-09-27
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 15 ++++++++------- NEWS.md | 13 +++++++++++++ README.md | 10 +++++----- build |only inst/CITATION | 4 ++-- man/ohoegdm-package.Rd | 3 +-- src/Makevars | 8 +++++--- src/Makevars.win | 8 +++++--- 9 files changed, 53 insertions(+), 34 deletions(-)
Title: Bayesian Estimation of an Exploratory Deterministic Input, Noisy
and Gate Model
Description: Perform a Bayesian estimation of the exploratory
deterministic input, noisy and gate (EDINA)
cognitive diagnostic model described by Chen et al. (2018)
<doi:10.1007/s11336-017-9579-4>.
Author: James Joseph Balamuta [aut, cre, cph] ,
Steven Andrew Culpepper [aut, cph] ,
Jeffrey A. Douglas [aut]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between edina versions 0.1.1 dated 2020-03-25 and 0.1.2 dated 2025-09-27
DESCRIPTION | 25 ++++++++++++------------- MD5 | 17 +++++++++-------- NEWS.md | 13 +++++++++++++ README.md | 19 +++++-------------- build |only inst/CITATION | 16 ++++++++-------- man/edina-package.Rd | 7 ++----- src/Makevars | 8 +++++--- src/Makevars.win | 8 +++++--- src/RcppExports.cpp | 5 +++++ 10 files changed, 64 insertions(+), 54 deletions(-)
Title: R Wrapper for 'agena.ai' API
Description: An R wrapper for 'agena.ai' <https://www.agena.ai> which provides users capabilities to work with 'agena.ai' using the R environment. Users can create Bayesian network models from scratch or import existing models in R and export to 'agena.ai' cloud or local API for calculations. Note: running calculations requires a valid 'agena.ai' API license (past the initial trial period of the local API).
Author: Erhan Pisirir [aut],
Eugene Dementiev [aut, cre],
Martin Neil [aut, cph]
Maintainer: Eugene Dementiev <support@agenarisk.com>
Diff between agena.ai versions 1.1.1 dated 2023-09-26 and 1.1.2 dated 2025-09-27
DESCRIPTION | 6 LICENSE | 4 MD5 | 90 NAMESPACE | 46 NEWS.md | 42 R/RAgena.R | 109 - README.md | 2886 ++++++++++++++++---------------- build/vignette.rds |binary inst/doc/batch-calculate.Rmd | 132 - inst/doc/batch-calculate.html | 129 - inst/doc/calculate-cloud.Rmd | 148 - inst/doc/calculate-cloud.html | 151 - inst/doc/calculate-local.Rmd | 154 - inst/doc/calculate-local.html | 155 - inst/doc/create-model.html | 203 +- inst/doc/sensitivity-cloud.Rmd | 116 - inst/doc/sensitivity-cloud.html | 139 - inst/doc/sensitivity-local.Rmd | 112 - inst/doc/sensitivity-local.html | 135 - inst/doc/setup-local-calculation.Rmd | 68 inst/doc/setup-local-calculation.html | 121 - man/Dataset-class.Rd | 42 man/Model-class.Rd | 230 +- man/Network-class.Rd | 86 man/Node-class.Rd | 178 - man/calculate.Rd | 52 man/create_batch_cases.Rd | 42 man/create_csv_template.Rd | 36 man/create_sensitivity_config.Rd | 62 man/from_cmpx.Rd | 38 man/generate_cmpx.Rd | 36 man/local_api_activate_license.Rd | 34 man/local_api_batch_calculate.Rd | 34 man/local_api_calculate.Rd | 42 man/local_api_clone.Rd | 28 man/local_api_compile.Rd | 30 man/local_api_sensitivity.Rd | 42 man/login.Rd | 38 man/sensitivity_analysis.Rd | 46 vignettes/CarCosts_DataSet_Modified.csv | 12 vignettes/batch-calculate.Rmd | 132 - vignettes/calculate-cloud.Rmd | 148 - vignettes/calculate-local.Rmd | 154 - vignettes/sensitivity-cloud.Rmd | 116 - vignettes/sensitivity-local.Rmd | 112 - vignettes/setup-local-calculation.Rmd | 68 46 files changed, 3392 insertions(+), 3392 deletions(-)