Title: Spatial Bayesian Factor Analysis
Description: Implements a spatial Bayesian non-parametric factor analysis model
with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC).
Spatial correlation is introduced in the columns of the factor loadings
matrix using a Bayesian non-parametric prior, the probit stick-breaking
process. Areal spatial data is modeled using a conditional autoregressive
(CAR) prior and point-referenced spatial data is treated using a Gaussian
process. The response variable can be modeled as Gaussian, probit, Tobit, or
Binomial (using Polya-Gamma augmentation). Temporal correlation is
introduced for the latent factors through a hierarchical structure and can
be specified as exponential or first-order autoregressive. Full details of
the package can be found in the accompanying vignette. Furthermore, the
details of the package can be found in "Bayesian Non-Parametric Factor
Analysis for Longitudinal Spatial Surfaces", by Berchuck et al (2019),
<doi:10.1214/20-BA1253> in Bayesian Analysis.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between spBFA versions 1.3 dated 2023-03-21 and 1.4.0 dated 2025-09-30
DESCRIPTION | 12 +- MD5 | 17 ++- NEWS.md |only R/spBFA-package.R | 3 build/vignette.rds |binary inst/doc/spBFA-example.R | 22 ++--- inst/doc/spBFA-example.html | 168 ++++++++++++++++++++------------------ man/spBFA.Rd | 1 src/DistributionFunctions.cpp | 48 +++++------ src/MCMC_Samplers.cpp | 183 +++++++++++++++++++++--------------------- 10 files changed, 235 insertions(+), 219 deletions(-)
Title: Many Global Governance Datacubes
Description: This is the core package offering a portal to the many packages universe.
It includes functions to help researchers access, work across, and maintain
ensembles of datasets on global governance called datacubes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [aut, ctb] ,
Bernhard Bieri [ctb] ,
Esther Peev [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manydata versions 1.0.3 dated 2025-06-18 and 1.1.3 dated 2025-09-30
manydata-1.0.3/manydata/R/compare.R |only manydata-1.0.3/manydata/R/consolidate.R |only manydata-1.0.3/manydata/R/describe_data.R |only manydata-1.0.3/manydata/R/resolve.R |only manydata-1.0.3/manydata/R/wrangling_data.R |only manydata-1.1.3/manydata/DESCRIPTION | 31 +++++------- manydata-1.1.3/manydata/MD5 | 56 ++++++++++++---------- manydata-1.1.3/manydata/NAMESPACE | 28 +++++++++++ manydata-1.1.3/manydata/NEWS.md | 34 +++++++++++++ manydata-1.1.3/manydata/R/call_sources.R | 31 ++++++++++-- manydata-1.1.3/manydata/R/code_extend.R |only manydata-1.1.3/manydata/R/compare_diff.R |only manydata-1.1.3/manydata/R/compare_dimensions.R |only manydata-1.1.3/manydata/R/compare_scores.R |only manydata-1.1.3/manydata/R/data_description.R |only manydata-1.1.3/manydata/R/data_find.R |only manydata-1.1.3/manydata/R/data_wrangling.R |only manydata-1.1.3/manydata/R/merge_consolidate.R |only manydata-1.1.3/manydata/R/merge_resolve.R |only manydata-1.1.3/manydata/R/zzz.R | 4 + manydata-1.1.3/manydata/inst/CITATION | 13 +++-- manydata-1.1.3/manydata/man/code_extend.Rd |only manydata-1.1.3/manydata/man/compare_categories.Rd | 2 manydata-1.1.3/manydata/man/compare_diff.Rd |only manydata-1.1.3/manydata/man/compare_dimensions.Rd | 2 manydata-1.1.3/manydata/man/compare_missing.Rd | 2 manydata-1.1.3/manydata/man/compare_overlap.Rd | 2 manydata-1.1.3/manydata/man/consolidate.Rd | 2 manydata-1.1.3/manydata/man/describe.Rd | 2 manydata-1.1.3/manydata/man/filter_datacube.Rd |only manydata-1.1.3/manydata/man/find.Rd |only manydata-1.1.3/manydata/man/find_year.Rd |only manydata-1.1.3/manydata/man/pluck.Rd | 2 manydata-1.1.3/manydata/man/recollect.Rd | 2 manydata-1.1.3/manydata/man/repaint.Rd | 2 manydata-1.1.3/manydata/man/resolving.Rd | 2 manydata-1.1.3/manydata/man/reunite.Rd | 2 manydata-1.1.3/manydata/man/scores.Rd |only manydata-1.1.3/manydata/man/transmutate.Rd | 2 39 files changed, 160 insertions(+), 61 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Wai Wong [ctb]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 1.2-0 dated 2025-04-02 and 1.3-0 dated 2025-09-30
Changelog | 4 + DESCRIPTION | 12 +-- MD5 | 127 +++++++++++++++++++++++------------------- NAMESPACE | 9 ++ R/cad.R | 63 ++++++++++---------- R/fractions.R | 55 ++++++++---------- R/kmSRdiagram.R | 1 R/kmassess.R |only R/kmassessbayesian.R |only R/kmassesshalfsplit.R |only R/kmassessinformative.R |only R/kmassessmultiplicative.R |only R/kmassesssimulation.R |only R/kmbasis.R | 93 +++++++++++++++--------------- R/kmbasisdiagram.R | 1 R/kmcolors.R | 2 R/kmdist.R | 1 R/kmdoubleequal.R |only R/kmeqreduction.R | 1 R/kmfringe.R | 1 R/kmgenerate.R | 2 R/kmhasse.R | 1 R/kmiswellgraded.R | 93 +++++++++++++++--------------- R/kmneighbourhood.R | 1 R/kmnotions.R | 1 R/kmsassess.R |only R/kmsf2basis.R | 2 R/kmsimulate.R | 125 ++++++++++++++++++++--------------------- R/kmsrvalidate.R | 3 R/kmsurmisefunction.R | 1 R/kmsurmiserelation.R | 1 R/kmsymmsetdiff.R | 3 R/kmtrivial.R | 1 R/kmunionclosure.R | 97 +++++++++++++++----------------- R/kmvalidate.R | 1 R/readwrite.R | 67 ++++++++++------------ R/xpl.R | 1 build/partial.rdb |only build/vignette.rds |binary inst/doc/kstMatrix.html | 62 ++++++++++---------- man/cad.Rd | 10 +-- man/fractions.Rd | 6 - man/kmSRdiagram.Rd | 2 man/kmSRvalidate.Rd | 5 - man/kmassess.Rd |only man/kmassessbayesian.Rd |only man/kmassesshalfsplit.Rd |only man/kmassessinformative.Rd |only man/kmassessmentsimulation.Rd |only man/kmassessmultiplicative.Rd |only man/kmbasis.Rd | 2 man/kmbasisdiagram.Rd | 2 man/kmcolors.Rd | 8 ++ man/kmdist.Rd | 1 man/kmdoubleequal.Rd |only man/kmeqreduction.Rd | 1 man/kmfringe.Rd | 1 man/kmgenerate.Rd | 2 man/kmhasse.Rd | 4 - man/kmiswellgraded.Rd | 5 - man/kmneighbourhood.Rd | 1 man/kmnotions.Rd | 1 man/kmsassess.Rd |only man/kmsf2basis.Rd | 8 ++ man/kmsimulate.Rd | 7 -- man/kmsurmisefunction.Rd | 2 man/kmsurmiserelation.Rd | 2 man/kmsymmsetdiff.Rd | 8 ++ man/kmtrivial.Rd | 1 man/kmunionclosure.Rd | 8 +- man/kmvalidate.Rd | 9 +- man/readwrite.Rd | 10 +-- man/xpl.Rd | 4 - 73 files changed, 482 insertions(+), 460 deletions(-)
Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph] ,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.13.0 dated 2025-08-20 and 0.13.3 dated 2025-09-30
DESCRIPTION | 8 MD5 | 36 +- NAMESPACE | 1 NEWS.md | 19 + R/config.R | 19 - R/server.R | 638 ++++++++++++++++++++++++++++++++-------- R/ui.R | 85 +++-- R/util.R | 389 ++++++++++++++++++++++-- README.md | 42 ++ inst/CITATION | 14 inst/css/surveydown.css | 97 ++++++ inst/js/highlight_unanswered.js | 72 ++++ inst/template/README.md |only inst/template/app.R | 8 inst/template/survey.qmd | 17 + man/sd_create_survey.Rd | 5 man/sd_show_if.Rd | 2 man/sd_skip_forward.Rd | 42 -- man/sd_skip_if.Rd | 47 ++ man/sd_stop_if.Rd |only 20 files changed, 1264 insertions(+), 277 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.4.1 dated 2025-06-07 and 3.4.2 dated 2025-09-30
randomForestSRC-3.4.1/randomForestSRC/R/find.interaction.rfsrc.R |only randomForestSRC-3.4.1/randomForestSRC/R/stat.split.rfsrc.R |only randomForestSRC-3.4.1/randomForestSRC/R/synthetic.rfsrc.R |only randomForestSRC-3.4.1/randomForestSRC/R/utilities_sgreedy.R |only randomForestSRC-3.4.1/randomForestSRC/R/utilities_tdc.R |only randomForestSRC-3.4.1/randomForestSRC/man/find.interaction.rfsrc.Rd |only randomForestSRC-3.4.1/randomForestSRC/man/stat.split.rfsrc.Rd |only randomForestSRC-3.4.1/randomForestSRC/man/synthetic.rfsrc.Rd |only randomForestSRC-3.4.1/randomForestSRC/src/Makevars.win |only randomForestSRC-3.4.1/randomForestSRC/src/randomForestSRC.c |only randomForestSRC-3.4.1/randomForestSRC/src/randomForestSRC.h |only randomForestSRC-3.4.2/randomForestSRC/DESCRIPTION | 8 randomForestSRC-3.4.2/randomForestSRC/MD5 | 215 +++- randomForestSRC-3.4.2/randomForestSRC/NAMESPACE | 10 randomForestSRC-3.4.2/randomForestSRC/R/generic.predict.rfsrc.R | 58 - randomForestSRC-3.4.2/randomForestSRC/R/partial.rfsrc.R | 58 - randomForestSRC-3.4.2/randomForestSRC/R/predict.rfsrc.R | 2 randomForestSRC-3.4.2/randomForestSRC/R/print.rfsrc.R | 515 ++++------ randomForestSRC-3.4.2/randomForestSRC/R/quantreg.rfsrc.R | 1 randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.R | 110 -- randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.anonymous.R | 1 randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.fast.R | 1 randomForestSRC-3.4.2/randomForestSRC/R/subsample.rfsrc.R | 1 randomForestSRC-3.4.2/randomForestSRC/R/tune.nodesize.rfsrc.R | 243 +++- randomForestSRC-3.4.2/randomForestSRC/R/tune.rfsrc.R | 463 ++++++-- randomForestSRC-3.4.2/randomForestSRC/R/utilities.R | 140 -- randomForestSRC-3.4.2/randomForestSRC/R/utilities_data.R | 8 randomForestSRC-3.4.2/randomForestSRC/R/utilities_imbalanced.R | 331 ++++-- randomForestSRC-3.4.2/randomForestSRC/configure | 220 +++- randomForestSRC-3.4.2/randomForestSRC/configure.ac | 88 + randomForestSRC-3.4.2/randomForestSRC/data/breast.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/follic.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/hd.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/housing.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/nutrigenomic.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/pbc.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/peakVO2.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/vdv.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/veteran.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/wihs.rda |binary randomForestSRC-3.4.2/randomForestSRC/data/wine.rda |binary randomForestSRC-3.4.2/randomForestSRC/inst/NEWS | 11 randomForestSRC-3.4.2/randomForestSRC/man/breast.Rd | 1 randomForestSRC-3.4.2/randomForestSRC/man/max.subtree.rfsrc.Rd | 3 randomForestSRC-3.4.2/randomForestSRC/man/plot.rfsrc.Rd | 2 randomForestSRC-3.4.2/randomForestSRC/man/plot.variable.rfsrc.Rd | 1 randomForestSRC-3.4.2/randomForestSRC/man/predict.rfsrc.Rd | 7 randomForestSRC-3.4.2/randomForestSRC/man/print.rfsrc.Rd | 2 randomForestSRC-3.4.2/randomForestSRC/man/randomForestSRC_package.Rd | 3 randomForestSRC-3.4.2/randomForestSRC/man/rfsrc.Rd | 7 randomForestSRC-3.4.2/randomForestSRC/man/tune.rfsrc.Rd | 212 ++-- randomForestSRC-3.4.2/randomForestSRC/man/utilities_internal.Rd | 5 randomForestSRC-3.4.2/randomForestSRC/src/R_init_randomForestSRC.c | 28 randomForestSRC-3.4.2/randomForestSRC/src/bootstrap.c |only randomForestSRC-3.4.2/randomForestSRC/src/bootstrap.h |only randomForestSRC-3.4.2/randomForestSRC/src/cindex.c |only randomForestSRC-3.4.2/randomForestSRC/src/cindex.h |only randomForestSRC-3.4.2/randomForestSRC/src/classification.c |only randomForestSRC-3.4.2/randomForestSRC/src/classification.h |only randomForestSRC-3.4.2/randomForestSRC/src/diagnostic.c |only randomForestSRC-3.4.2/randomForestSRC/src/diagnostic.h |only randomForestSRC-3.4.2/randomForestSRC/src/distance.c |only randomForestSRC-3.4.2/randomForestSRC/src/distance.h |only randomForestSRC-3.4.2/randomForestSRC/src/entry.c |only randomForestSRC-3.4.2/randomForestSRC/src/entry.h |only randomForestSRC-3.4.2/randomForestSRC/src/entryGeneric.c |only randomForestSRC-3.4.2/randomForestSRC/src/entryGeneric.h |only randomForestSRC-3.4.2/randomForestSRC/src/error.c |only randomForestSRC-3.4.2/randomForestSRC/src/error.h |only randomForestSRC-3.4.2/randomForestSRC/src/external.h |only randomForestSRC-3.4.2/randomForestSRC/src/factor.h |only randomForestSRC-3.4.2/randomForestSRC/src/factorOps.c |only randomForestSRC-3.4.2/randomForestSRC/src/factorOps.h |only randomForestSRC-3.4.2/randomForestSRC/src/global.h |only randomForestSRC-3.4.2/randomForestSRC/src/importance.c |only randomForestSRC-3.4.2/randomForestSRC/src/importance.h |only randomForestSRC-3.4.2/randomForestSRC/src/importanceAnti.c |only randomForestSRC-3.4.2/randomForestSRC/src/importanceAnti.h |only randomForestSRC-3.4.2/randomForestSRC/src/importancePerm.c |only randomForestSRC-3.4.2/randomForestSRC/src/importancePerm.h |only randomForestSRC-3.4.2/randomForestSRC/src/importanceRand.c |only randomForestSRC-3.4.2/randomForestSRC/src/importanceRand.h |only randomForestSRC-3.4.2/randomForestSRC/src/impute.c |only randomForestSRC-3.4.2/randomForestSRC/src/impute.h |only randomForestSRC-3.4.2/randomForestSRC/src/internal.c |only randomForestSRC-3.4.2/randomForestSRC/src/leafLink.c |only randomForestSRC-3.4.2/randomForestSRC/src/leafLink.h |only randomForestSRC-3.4.2/randomForestSRC/src/marginal.c |only randomForestSRC-3.4.2/randomForestSRC/src/marginal.h |only randomForestSRC-3.4.2/randomForestSRC/src/nativeInfo.h |only randomForestSRC-3.4.2/randomForestSRC/src/nativeUtil.c |only randomForestSRC-3.4.2/randomForestSRC/src/nativeUtil.h |only randomForestSRC-3.4.2/randomForestSRC/src/node.h |only randomForestSRC-3.4.2/randomForestSRC/src/nodeOps.c |only randomForestSRC-3.4.2/randomForestSRC/src/nodeOps.h |only randomForestSRC-3.4.2/randomForestSRC/src/nrutil.c |only randomForestSRC-3.4.2/randomForestSRC/src/nrutil.h |only randomForestSRC-3.4.2/randomForestSRC/src/partial.c |only randomForestSRC-3.4.2/randomForestSRC/src/partial.h |only randomForestSRC-3.4.2/randomForestSRC/src/polarity.c |only randomForestSRC-3.4.2/randomForestSRC/src/polarity.h |only randomForestSRC-3.4.2/randomForestSRC/src/processEnsemble.c |only randomForestSRC-3.4.2/randomForestSRC/src/processEnsemble.h |only randomForestSRC-3.4.2/randomForestSRC/src/quantile.c |only randomForestSRC-3.4.2/randomForestSRC/src/quantile.h |only randomForestSRC-3.4.2/randomForestSRC/src/random.c |only randomForestSRC-3.4.2/randomForestSRC/src/random.h |only randomForestSRC-3.4.2/randomForestSRC/src/regression.c |only randomForestSRC-3.4.2/randomForestSRC/src/regression.h |only randomForestSRC-3.4.2/randomForestSRC/src/rfsrc.c |only randomForestSRC-3.4.2/randomForestSRC/src/rfsrc.h |only randomForestSRC-3.4.2/randomForestSRC/src/rfsrcUtil.c |only randomForestSRC-3.4.2/randomForestSRC/src/rfsrcUtil.h |only randomForestSRC-3.4.2/randomForestSRC/src/sampling.c |only randomForestSRC-3.4.2/randomForestSRC/src/sampling.h |only randomForestSRC-3.4.2/randomForestSRC/src/sexpOutgoing.c |only randomForestSRC-3.4.2/randomForestSRC/src/sexpOutgoing.h |only randomForestSRC-3.4.2/randomForestSRC/src/snpAuxiliaryInfo.h |only randomForestSRC-3.4.2/randomForestSRC/src/sortedLink.c |only randomForestSRC-3.4.2/randomForestSRC/src/sortedLink.h |only randomForestSRC-3.4.2/randomForestSRC/src/sources.list |only randomForestSRC-3.4.2/randomForestSRC/src/split.c |only randomForestSRC-3.4.2/randomForestSRC/src/split.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitClas.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitClas.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitCustom.c | 353 ------ randomForestSRC-3.4.2/randomForestSRC/src/splitCustom.h | 59 - randomForestSRC-3.4.2/randomForestSRC/src/splitCustomDriver.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitCustomDriver.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitGreedy.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitGreedy.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitInfo.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitMahalanobis.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitMahalanobis.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitMult.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitMult.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitQuantile.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitQuantile.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitRegr.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitRegr.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitSurv.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitSurv.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitUtil.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitUtil.h |only randomForestSRC-3.4.2/randomForestSRC/src/splitUtilSurv.c |only randomForestSRC-3.4.2/randomForestSRC/src/splitUtilSurv.h |only randomForestSRC-3.4.2/randomForestSRC/src/stack.c |only randomForestSRC-3.4.2/randomForestSRC/src/stack.h |only randomForestSRC-3.4.2/randomForestSRC/src/stackOutput.c |only randomForestSRC-3.4.2/randomForestSRC/src/stackOutput.h |only randomForestSRC-3.4.2/randomForestSRC/src/stackOutputQQ.c |only randomForestSRC-3.4.2/randomForestSRC/src/stackOutputQQ.h |only randomForestSRC-3.4.2/randomForestSRC/src/stackParallel.c |only randomForestSRC-3.4.2/randomForestSRC/src/stackParallel.h |only randomForestSRC-3.4.2/randomForestSRC/src/stackPreDefined.c |only randomForestSRC-3.4.2/randomForestSRC/src/stackPreDefined.h |only randomForestSRC-3.4.2/randomForestSRC/src/survival.c |only randomForestSRC-3.4.2/randomForestSRC/src/survival.h |only randomForestSRC-3.4.2/randomForestSRC/src/survivalE.c |only randomForestSRC-3.4.2/randomForestSRC/src/survivalE.h |only randomForestSRC-3.4.2/randomForestSRC/src/svdUtil.c |only randomForestSRC-3.4.2/randomForestSRC/src/svdUtil.h |only randomForestSRC-3.4.2/randomForestSRC/src/termOps.c |only randomForestSRC-3.4.2/randomForestSRC/src/termOps.h |only randomForestSRC-3.4.2/randomForestSRC/src/terminal.h |only randomForestSRC-3.4.2/randomForestSRC/src/trace.c |only randomForestSRC-3.4.2/randomForestSRC/src/trace.h |only randomForestSRC-3.4.2/randomForestSRC/src/tree.c |only randomForestSRC-3.4.2/randomForestSRC/src/tree.h |only randomForestSRC-3.4.2/randomForestSRC/src/treeJIT.c |only randomForestSRC-3.4.2/randomForestSRC/src/treeJIT.h |only randomForestSRC-3.4.2/randomForestSRC/src/treeUtil.c |only randomForestSRC-3.4.2/randomForestSRC/src/treeUtil.h |only 173 files changed, 1568 insertions(+), 1599 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.6 dated 2025-01-15 and 0.7.0 dated 2025-09-30
DESCRIPTION | 12 ++-- MD5 | 29 +++++++--- NAMESPACE | 57 +++++++++++++++++++++ NEWS.md | 3 + R/ivo_table_gt.R |only R/ivo_tables.R | 16 ++--- README.md | 4 + build/vignette.rds |binary inst/doc/ivo_table.R | 8 +- inst/doc/ivo_table.Rmd | 6 +- inst/doc/ivo_table.html | 122 ++++++++++++++++++++++++++------------------- inst/doc/ivo_table_gt.R |only inst/doc/ivo_table_gt.Rmd |only inst/doc/ivo_table_gt.html |only man/figures |only man/ivo_gt_theme.Rd |only man/ivo_table_gt.Rd |only vignettes/ivo_table.Rmd | 6 +- vignettes/ivo_table_gt.Rmd |only vignettes/patchwork.png |only 20 files changed, 181 insertions(+), 82 deletions(-)
Title: Clinical Stroke Research
Description: A collection of tools for clinical trial data management and
analysis in research and teaching.
The package is mainly collected for personal use, but any use beyond that is encouraged.
This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added.
Version follows months and year. See NEWS/Changelog for release notes.
This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>).
The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>.
The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between stRoke versions 25.9.1 dated 2025-09-02 and 25.9.2 dated 2025-09-30
DESCRIPTION | 6 +- MD5 | 11 +++- NEWS.md | 4 + R/trial.R |only data/trial.rda |only inst/WORDLIST | 2 inst/doc/toolbox.html | 114 +++++++++++++++++++++++++------------------------- man/trial.Rd |only 8 files changed, 73 insertions(+), 64 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre2' (BSD license, see <https://github.com/PCRE2Project/pcre2/blob/master/LICENCE.md>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stephanie Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.6.9 dated 2025-09-27 and 0.6.10 dated 2025-09-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 7 ++++++- inst/doc/vignette.html | 4 ++-- src/cwb/cl/registry.tab.c | 14 +++++++++++++- src/cwb/cqp/context_descriptor.c | 8 ++++++++ 6 files changed, 38 insertions(+), 13 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.3 dated 2025-05-26 and 2.3.4 dated 2025-09-30
DESCRIPTION | 6 ++--- MD5 | 22 +++++++++--------- NEWS | 3 ++ build/vignette.rds |binary inst/doc/bignum.html | 32 +++++++++++++------------- inst/doc/crypto_hashing.html | 8 +++--- inst/doc/keys.html | 48 ++++++++++++++++++++-------------------- inst/doc/secure_rng.html | 18 +++++++-------- src/cert.c | 9 ++++--- src/info.c | 5 ++++ tests/testthat/helper-version.R | 2 - tests/testthat/test_ssl_ctx.R | 3 +- 12 files changed, 83 insertions(+), 73 deletions(-)
Title: Visualisation and Analysis of Ocean Data Derived from Satellites
Description: With 'satin' functions, visualisation, data extraction and further analysis like producing climatologies from several images, and anomalies of satellite derived ocean data can be easily done. Reading functions can import a user defined geographical extent of data stored in netCDF files. Currently supported ocean data sources include NASA's Oceancolor web page <https://oceancolor.gsfc.nasa.gov/>, sensors VIIRS-SNPP; MODIS-Terra; MODIS-Aqua; and SeaWiFS. Available variables from this source includes chlorophyll concentration, sea surface temperature (SST), and several others. Data sources specific for SST that can be imported too includes Pathfinder AVHRR <https://www.ncei.noaa.gov/products/avhrr-pathfinder-sst> and GHRSST <https://www.ghrsst.org/>. In addition, ocean productivity data produced by Oregon State University can also be handled previous conversion from HDF4 to HDF5 format. Many other ocean variables can be processed by importing netCDF data files from [...truncated...]
Author: Hector Villalobos [aut, cre] ,
Eduardo Gonzalez-Rodriguez [aut]
Maintainer: Hector Villalobos <hvillalo@ipn.mx>
Diff between satin versions 1.1.0 dated 2022-09-22 and 1.2.0 dated 2025-09-30
DESCRIPTION | 26 +++++++++++++++++++------- MD5 | 52 +++++++++++++++++++++++++++------------------------- NEWS | 4 ++++ NEWS.md | 8 +++++++- R/climatology.R | 7 +++++-- R/imageScale.R | 2 +- R/name_ncvars.R |only R/plot.satin.R | 25 +++++++++++++++---------- R/read.cmems.R | 6 ++++-- R/satinDataframe.R | 4 ++-- R/satinMean.R | 4 ++-- README.md | 3 ++- data/dchl.rda |binary data/dcmems.rda |binary data/dmap.rda |binary data/dnpp.rda |binary data/dsst.rda |binary man/crop.Rd | 2 +- man/dchl.Rd | 4 ++-- man/dnpp.Rd | 4 ++-- man/dsst.Rd | 4 ++-- man/isolines.Rd | 4 ++-- man/name_ncvars.Rd |only man/plot.satin.Rd | 9 +++++---- man/read.cmems.Rd | 5 +++-- man/read.ghrsst.Rd | 2 +- man/read.osunpp.Rd | 2 +- man/satinMean.Rd | 4 +++- 28 files changed, 110 insertions(+), 71 deletions(-)
Title: Download Paleoclimate Data from 'PaleoClim'
Description: 'PaleoClim' <http://www.paleoclim.org> (Brown et al. 2019,
<doi:10.1038/sdata.2018.254>) is a set of free, high resolution paleoclimate
surfaces covering the whole globe. It includes data on surface temperature,
precipitation and the standard bioclimatic variables commonly used in
ecological modelling, derived from the 'HadCM3' general circulation model and
downscaled to a spatial resolution of up to 2.5 minutes. Simulations are
available for key time periods from the Late Holocene to mid-Pliocene. Data on
current and Last Glacial Maximum climate is derived from 'CHELSA' (Karger et
al. 2017, <doi:10.1038/sdata.2017.122>) and reprocessed by 'PaleoClim' to
match their format; it is available at up to 30 seconds resolution. This
package provides a simple interface for downloading 'PaleoClim' data in R,
with support for caching and filtering retrieved data by period, resolution,
and geographic extent.
Author: Joe Roe [aut, cre, cph]
Maintainer: Joe Roe <joe@joeroe.io>
Diff between rpaleoclim versions 1.0.1 dated 2023-08-09 and 1.1.0 dated 2025-09-30
rpaleoclim-1.0.1/rpaleoclim/inst/doc/rpaleoclim.R |only rpaleoclim-1.0.1/rpaleoclim/tests/testthat/helper-download.R |only rpaleoclim-1.1.0/rpaleoclim/DESCRIPTION | 12 rpaleoclim-1.1.0/rpaleoclim/MD5 | 30 - rpaleoclim-1.1.0/rpaleoclim/NEWS.md | 7 rpaleoclim-1.1.0/rpaleoclim/R/paleoclim.R | 38 +- rpaleoclim-1.1.0/rpaleoclim/R/rpaleoclim-package.R | 4 rpaleoclim-1.1.0/rpaleoclim/README.md | 4 rpaleoclim-1.1.0/rpaleoclim/build/partial.rdb |binary rpaleoclim-1.1.0/rpaleoclim/build/vignette.rds |binary rpaleoclim-1.1.0/rpaleoclim/inst/CITATION | 6 rpaleoclim-1.1.0/rpaleoclim/inst/doc/rpaleoclim.Rmd | 157 ++++++---- rpaleoclim-1.1.0/rpaleoclim/inst/doc/rpaleoclim.html | 52 +-- rpaleoclim-1.1.0/rpaleoclim/man/figures/README-rpaleoclim-demo-1.png |binary rpaleoclim-1.1.0/rpaleoclim/tests/testthat/test-paleoclim.R | 40 +- rpaleoclim-1.1.0/rpaleoclim/vignettes/eg-paleoclim-crop-1.png |only rpaleoclim-1.1.0/rpaleoclim/vignettes/rpaleoclim.Rmd | 157 ++++++---- rpaleoclim-1.1.0/rpaleoclim/vignettes/rpaleoclim.Rmd.source |only 18 files changed, 309 insertions(+), 198 deletions(-)
Title: Calculate 3D Contour Meshes Using the Marching Cubes Algorithm
Description: A port of the C++ routine for applying the marching cubes algorithm written by
Thomas Lewiner et al. (2012) <doi:10.1080/10867651.2003.10487582> into an R package.
The package supplies the contour3d() function, which takes a 3-dimensional array of voxel
data and calculates the vertices, vertex normals, and faces for a 3d mesh representing
the contour(s) at a given level.
Author: S. H. Wilks [aut, cre],
Thomas Lewiner [aut]
Maintainer: S. H. Wilks <sam.wilks@unimelb.edu.au>
Diff between rmarchingcubes versions 0.1.2 dated 2021-06-16 and 0.1.4 dated 2025-09-30
DESCRIPTION | 25 + MD5 | 31 +- NEWS.md | 11 README.md | 9 build/vignette.rds |binary inst/doc/calculating_3d_contours.R | 48 +-- inst/doc/calculating_3d_contours.Rmd | 2 inst/doc/calculating_3d_contours.html | 442 +++++++++++++++++++++++++--------- src/LookUpTable.h | 96 +++---- src/Makevars | 12 src/Makevars.win | 12 src/MarchingCubes.cpp | 6 src/MarchingCubes.h | 2 src/RcppExports.cpp | 5 tests/testthat/_snaps |only tests/testthat/test-marchingcubes.R | 42 ++- vignettes/calculating_3d_contours.Rmd | 2 17 files changed, 488 insertions(+), 257 deletions(-)
More information about rmarchingcubes at CRAN
Permanent link
Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data.
Available features include determination of pollen season limits,
replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>),
calculation of growing degree days (Baskerville and Emin (1969) <doi:10.2307/1933912>),
and determination of the base temperature for growing degree days
(Yang et al. (1995) <doi:10.1016/0168-1923(94)02185-M).
Author: Jakub Nowosad [aut, cre]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between pollen versions 0.82.0 dated 2021-12-03 and 0.83.0 dated 2025-09-30
DESCRIPTION | 14 - MD5 | 21 - README.md | 33 +- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 20 - inst/doc/gdd.R | 2 inst/doc/gdd.html | 479 ++++++++++++++++++++++++++--------- inst/doc/intro.R | 12 inst/doc/intro.html | 596 ++++++++++++++++++++++++++++++-------------- man/pollen-package.Rd | 4 tests/testthat/test-zeros.R | 14 - 12 files changed, 831 insertions(+), 364 deletions(-)
Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps
and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool [aut, cre]
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between OSMscale versions 0.5.22 dated 2025-07-27 and 0.5.23 dated 2025-09-30
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/mapComp.R | 13 ++++++++----- R/pointsMap.R | 7 +++++-- R/projectPoints.R | 2 ++ R/scaleBar.R | 11 +++++++++-- man/mapComp.Rd | 5 +++-- man/pointsMap.Rd | 2 ++ man/projectPoints.Rd | 2 ++ man/scaleBar.Rd | 11 +++++++++-- 10 files changed, 54 insertions(+), 27 deletions(-)
Title: Facilitation of Data Preparation and Plotting Procedures for RDA
and PCA Analyses
Description: Help to the occasional R user for synthesis and enhanced graphical visualization of redundancy analysis (RDA) and principal component analysis (PCA) methods and objects.
Inputs are : data frame, RDA (package 'vegan') and PCA (package 'FactoMineR') objects.
Outputs are : synthesized results of RDA, displayed in console and saved in tables ; displayed and saved objects of PCA graphic visualization of individuals and variables projections with multiple graphic parameters.
Author: Gregoire Bianchetti [aut, cre]
Maintainer: Gregoire Bianchetti <auguste.blam@gmail.com>
Diff between GABB versions 0.3.9 dated 2025-05-14 and 0.3.10 dated 2025-09-30
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/PCA_RDA_graphics.R | 13 ++++++++++--- 3 files changed, 16 insertions(+), 9 deletions(-)
Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan'
package, which provides the R interface to the Stan C++ library for Bayesian
estimation. Users specify models via the customary R syntax with a formula and
data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut],
Imad Ali [ctb],
Sam Brilleman [ctb],
Jacqueline Buros Novik [ctb] ,
AstraZeneca [ctb] ,
Trustees of Columbia University [cph],
Simon Wood [cph] ,
R Core Deveopment Team [cph] ,
Douglas Bates [cph] ,
Martin Maechler [cph] ,
Ben Bolk [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstanarm versions 2.32.1 dated 2024-01-18 and 2.32.2 dated 2025-09-30
rstanarm-2.32.1/rstanarm/cleanup |only rstanarm-2.32.1/rstanarm/cleanup.win |only rstanarm-2.32.1/rstanarm/inst/include/meta_header.hpp |only rstanarm-2.32.1/rstanarm/src/Makevars.win |only rstanarm-2.32.1/rstanarm/src/rstanarm-win.def |only rstanarm-2.32.1/rstanarm/src/stan_files |only rstanarm-2.32.1/rstanarm/tests/testthat/include |only rstanarm-2.32.1/rstanarm/tests/testthat/stan_files |only rstanarm-2.32.1/rstanarm/tools |only rstanarm-2.32.2/rstanarm/DESCRIPTION | 13 rstanarm-2.32.2/rstanarm/MD5 | 375 - rstanarm-2.32.2/rstanarm/NAMESPACE | 3 rstanarm-2.32.2/rstanarm/R/bayes_R2.R | 4 rstanarm-2.32.2/rstanarm/R/doc-datasets.R | 2 rstanarm-2.32.2/rstanarm/R/doc-rstanarm-package.R | 9 rstanarm-2.32.2/rstanarm/R/jm_data_block.R | 20 rstanarm-2.32.2/rstanarm/R/jm_make_assoc_parts.R | 8 rstanarm-2.32.2/rstanarm/R/jm_make_assoc_terms.R | 3 rstanarm-2.32.2/rstanarm/R/launch_shinystan.R | 2 rstanarm-2.32.2/rstanarm/R/log_lik.R | 6 rstanarm-2.32.2/rstanarm/R/loo-prediction.R | 1 rstanarm-2.32.2/rstanarm/R/loo.R | 56 rstanarm-2.32.2/rstanarm/R/misc.R | 14 rstanarm-2.32.2/rstanarm/R/plots.R | 2 rstanarm-2.32.2/rstanarm/R/pp_check.R | 6 rstanarm-2.32.2/rstanarm/R/pp_data.R | 6 rstanarm-2.32.2/rstanarm/R/predictive_error.R | 1 rstanarm-2.32.2/rstanarm/R/stan_biglm.R | 2 rstanarm-2.32.2/rstanarm/R/stan_clogit.R | 2 rstanarm-2.32.2/rstanarm/R/stan_glm.fit.R | 6 rstanarm-2.32.2/rstanarm/R/stanmodels.R | 63 rstanarm-2.32.2/rstanarm/R/stanmvreg-methods.R | 4 rstanarm-2.32.2/rstanarm/R/stanreg-methods.R | 6 rstanarm-2.32.2/rstanarm/R/stanreg-objects.R | 2 rstanarm-2.32.2/rstanarm/R/stanreg_list.R | 3 rstanarm-2.32.2/rstanarm/R/zzz.R | 11 rstanarm-2.32.2/rstanarm/build/partial.rdb |binary rstanarm-2.32.2/rstanarm/build/vignette.rds |binary rstanarm-2.32.2/rstanarm/configure |only rstanarm-2.32.2/rstanarm/configure.win |only rstanarm-2.32.2/rstanarm/inst/doc/ab-testing.Rmd | 2 rstanarm-2.32.2/rstanarm/inst/doc/ab-testing.html | 1059 +++-- rstanarm-2.32.2/rstanarm/inst/doc/aov.R | 16 rstanarm-2.32.2/rstanarm/inst/doc/aov.html | 227 - rstanarm-2.32.2/rstanarm/inst/doc/betareg.R | 10 rstanarm-2.32.2/rstanarm/inst/doc/betareg.html | 350 + rstanarm-2.32.2/rstanarm/inst/doc/binomial.R | 22 rstanarm-2.32.2/rstanarm/inst/doc/binomial.Rmd | 2 rstanarm-2.32.2/rstanarm/inst/doc/binomial.html | 522 +- rstanarm-2.32.2/rstanarm/inst/doc/continuous.R | 72 rstanarm-2.32.2/rstanarm/inst/doc/continuous.Rmd | 10 rstanarm-2.32.2/rstanarm/inst/doc/continuous.html | 551 +- rstanarm-2.32.2/rstanarm/inst/doc/count.R | 22 rstanarm-2.32.2/rstanarm/inst/doc/count.Rmd | 6 rstanarm-2.32.2/rstanarm/inst/doc/count.html | 346 + rstanarm-2.32.2/rstanarm/inst/doc/glmer.R | 26 rstanarm-2.32.2/rstanarm/inst/doc/glmer.html | 534 ++ rstanarm-2.32.2/rstanarm/inst/doc/jm.R | 20 rstanarm-2.32.2/rstanarm/inst/doc/jm.html | 1918 +++++++--- rstanarm-2.32.2/rstanarm/inst/doc/lm.R | 6 rstanarm-2.32.2/rstanarm/inst/doc/lm.html | 482 +- rstanarm-2.32.2/rstanarm/inst/doc/mrp.R | 274 - rstanarm-2.32.2/rstanarm/inst/doc/mrp.html | 965 +++-- rstanarm-2.32.2/rstanarm/inst/doc/polr.R | 8 rstanarm-2.32.2/rstanarm/inst/doc/polr.html | 327 + rstanarm-2.32.2/rstanarm/inst/doc/pooling.R | 62 rstanarm-2.32.2/rstanarm/inst/doc/pooling.Rmd | 10 rstanarm-2.32.2/rstanarm/inst/doc/pooling.html | 1628 +++++--- rstanarm-2.32.2/rstanarm/inst/doc/priors.R | 30 rstanarm-2.32.2/rstanarm/inst/doc/priors.html | 440 +- rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.R | 24 rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.Rmd | 26 rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.html | 653 ++- rstanarm-2.32.2/rstanarm/inst/include/stan_meta_header.hpp |only rstanarm-2.32.2/rstanarm/inst/stan |only rstanarm-2.32.2/rstanarm/man/bayes_R2.stanreg.Rd | 4 rstanarm-2.32.2/rstanarm/man/launch_shinystan.stanreg.Rd | 2 rstanarm-2.32.2/rstanarm/man/loo.stanreg.Rd | 29 rstanarm-2.32.2/rstanarm/man/loo_predict.stanreg.Rd | 2 rstanarm-2.32.2/rstanarm/man/plot.stanreg.Rd | 2 rstanarm-2.32.2/rstanarm/man/pp_check.stanreg.Rd | 4 rstanarm-2.32.2/rstanarm/man/rstanarm-package.Rd | 29 rstanarm-2.32.2/rstanarm/man/stan_betareg.Rd | 2 rstanarm-2.32.2/rstanarm/man/stan_biglm.Rd | 2 rstanarm-2.32.2/rstanarm/man/stan_glm.Rd | 2 rstanarm-2.32.2/rstanarm/man/stan_lm.Rd | 2 rstanarm-2.32.2/rstanarm/man/stan_polr.Rd | 2 rstanarm-2.32.2/rstanarm/man/stanreg-objects.Rd | 2 rstanarm-2.32.2/rstanarm/src/Makevars | 22 rstanarm-2.32.2/rstanarm/src/stanExports_bernoulli.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_bernoulli.h |only rstanarm-2.32.2/rstanarm/src/stanExports_binomial.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_binomial.h |only rstanarm-2.32.2/rstanarm/src/stanExports_continuous.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_continuous.h |only rstanarm-2.32.2/rstanarm/src/stanExports_count.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_count.h |only rstanarm-2.32.2/rstanarm/src/stanExports_jm.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_jm.h |only rstanarm-2.32.2/rstanarm/src/stanExports_lm.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_lm.h |only rstanarm-2.32.2/rstanarm/src/stanExports_mvmer.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_mvmer.h |only rstanarm-2.32.2/rstanarm/src/stanExports_polr.cc |only rstanarm-2.32.2/rstanarm/src/stanExports_polr.h |only rstanarm-2.32.2/rstanarm/tests/testthat/test_loo.R | 2 rstanarm-2.32.2/rstanarm/tests/testthat/test_methods.R | 3 rstanarm-2.32.2/rstanarm/tests/testthat/test_stan_clogit.R | 7 rstanarm-2.32.2/rstanarm/tests/testthat/test_stan_functions.R | 4 rstanarm-2.32.2/rstanarm/vignettes/ab-testing.Rmd | 2 rstanarm-2.32.2/rstanarm/vignettes/binomial.Rmd | 2 rstanarm-2.32.2/rstanarm/vignettes/continuous.Rmd | 10 rstanarm-2.32.2/rstanarm/vignettes/count.Rmd | 6 rstanarm-2.32.2/rstanarm/vignettes/pooling.Rmd | 10 rstanarm-2.32.2/rstanarm/vignettes/rstanarm.Rmd | 26 115 files changed, 7798 insertions(+), 3660 deletions(-)
More information about OmopConstructor at CRAN
Permanent link
More information about nonParQuantileCausality at CRAN
Permanent link
Title: An Analysis Toolbox for Hermitian Positive Definite Matrices
Description: An implementation of data analysis tools for samples of symmetric or
Hermitian positive definite matrices, such as collections of covariance matrices
or spectral density matrices. The tools in this package can be used to perform: (i)
intrinsic wavelet transforms for curves (1D) or surfaces (2D) of Hermitian positive
definite matrices with applications to dimension reduction, denoising and clustering in the
space of Hermitian positive definite matrices; and (ii) exploratory data analysis and inference
for samples of positive definite matrices by means of intrinsic data depth functions and
rank-based hypothesis tests in the space of Hermitian positive definite matrices.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <joris.chau@openanalytics.eu>
Diff between pdSpecEst versions 1.2.4 dated 2020-01-08 and 1.2.6 dated 2025-09-30
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Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling in ecological applications. Functions include models for species
population density, spatial smoothing, multivariate separability, point process
model for creating pseudo- absences and sub-sampling, Quadrant-based sampling and
analysis, auto-logistic modeling, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre] ,
Melanie A. Murphy [ctb],
Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>
Diff between spatialEco versions 2.0-2 dated 2023-11-17 and 2.0-3 dated 2025-09-30
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Title: Procrustes Matching for Latent Space Item Response Model
Description: Procrustes matching of the posterior samples of person and item latent positions from latent space item response models. The methods implemented in this package are based on work by Borg, I., Groenen, P. (1997, ISBN:978-0-387-94845-4), Jeon, M., Jin, I. H., Schweinberger, M., Baugh, S. (2021) <doi:10.1007/s11336-021-09762-5>, and Andrew, D. M., Kevin M. Q., Jong Hee Park. (2011) <doi:10.18637/jss.v042.i09>.
Author: Jinwen Luo [aut, cre] ,
Minjeong Jeon [aut]
Maintainer: Jinwen Luo <jevanluo@ucla.edu>
Diff between prolsirm versions 0.1.0 dated 2023-09-20 and 0.1.1 dated 2025-09-30
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/procrustes.R | 6 ++++-- man/procrustes.Rd | 13 ++++++++----- 4 files changed, 20 insertions(+), 15 deletions(-)