Tue, 30 Sep 2025

Package spBFA updated to version 1.4.0 with previous version 1.3 dated 2023-03-21

Title: Spatial Bayesian Factor Analysis
Description: Implements a spatial Bayesian non-parametric factor analysis model with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC). Spatial correlation is introduced in the columns of the factor loadings matrix using a Bayesian non-parametric prior, the probit stick-breaking process. Areal spatial data is modeled using a conditional autoregressive (CAR) prior and point-referenced spatial data is treated using a Gaussian process. The response variable can be modeled as Gaussian, probit, Tobit, or Binomial (using Polya-Gamma augmentation). Temporal correlation is introduced for the latent factors through a hierarchical structure and can be specified as exponential or first-order autoregressive. Full details of the package can be found in the accompanying vignette. Furthermore, the details of the package can be found in "Bayesian Non-Parametric Factor Analysis for Longitudinal Spatial Surfaces", by Berchuck et al (2019), <doi:10.1214/20-BA1253> in Bayesian Analysis.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>

Diff between spBFA versions 1.3 dated 2023-03-21 and 1.4.0 dated 2025-09-30

 DESCRIPTION                   |   12 +-
 MD5                           |   17 ++-
 NEWS.md                       |only
 R/spBFA-package.R             |    3 
 build/vignette.rds            |binary
 inst/doc/spBFA-example.R      |   22 ++---
 inst/doc/spBFA-example.html   |  168 ++++++++++++++++++++------------------
 man/spBFA.Rd                  |    1 
 src/DistributionFunctions.cpp |   48 +++++------
 src/MCMC_Samplers.cpp         |  183 +++++++++++++++++++++---------------------
 10 files changed, 235 insertions(+), 219 deletions(-)

More information about spBFA at CRAN
Permanent link

Package manydata updated to version 1.1.3 with previous version 1.0.3 dated 2025-06-18

Title: Many Global Governance Datacubes
Description: This is the core package offering a portal to the many packages universe. It includes functions to help researchers access, work across, and maintain ensembles of datasets on global governance called datacubes.
Author: James Hollway [cre, aut, ctb] , Henrique Sposito [aut, ctb] , Bernhard Bieri [ctb] , Esther Peev [ctb] , Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>

Diff between manydata versions 1.0.3 dated 2025-06-18 and 1.1.3 dated 2025-09-30

 manydata-1.0.3/manydata/R/compare.R               |only
 manydata-1.0.3/manydata/R/consolidate.R           |only
 manydata-1.0.3/manydata/R/describe_data.R         |only
 manydata-1.0.3/manydata/R/resolve.R               |only
 manydata-1.0.3/manydata/R/wrangling_data.R        |only
 manydata-1.1.3/manydata/DESCRIPTION               |   31 +++++-------
 manydata-1.1.3/manydata/MD5                       |   56 ++++++++++++----------
 manydata-1.1.3/manydata/NAMESPACE                 |   28 +++++++++++
 manydata-1.1.3/manydata/NEWS.md                   |   34 +++++++++++++
 manydata-1.1.3/manydata/R/call_sources.R          |   31 ++++++++++--
 manydata-1.1.3/manydata/R/code_extend.R           |only
 manydata-1.1.3/manydata/R/compare_diff.R          |only
 manydata-1.1.3/manydata/R/compare_dimensions.R    |only
 manydata-1.1.3/manydata/R/compare_scores.R        |only
 manydata-1.1.3/manydata/R/data_description.R      |only
 manydata-1.1.3/manydata/R/data_find.R             |only
 manydata-1.1.3/manydata/R/data_wrangling.R        |only
 manydata-1.1.3/manydata/R/merge_consolidate.R     |only
 manydata-1.1.3/manydata/R/merge_resolve.R         |only
 manydata-1.1.3/manydata/R/zzz.R                   |    4 +
 manydata-1.1.3/manydata/inst/CITATION             |   13 +++--
 manydata-1.1.3/manydata/man/code_extend.Rd        |only
 manydata-1.1.3/manydata/man/compare_categories.Rd |    2 
 manydata-1.1.3/manydata/man/compare_diff.Rd       |only
 manydata-1.1.3/manydata/man/compare_dimensions.Rd |    2 
 manydata-1.1.3/manydata/man/compare_missing.Rd    |    2 
 manydata-1.1.3/manydata/man/compare_overlap.Rd    |    2 
 manydata-1.1.3/manydata/man/consolidate.Rd        |    2 
 manydata-1.1.3/manydata/man/describe.Rd           |    2 
 manydata-1.1.3/manydata/man/filter_datacube.Rd    |only
 manydata-1.1.3/manydata/man/find.Rd               |only
 manydata-1.1.3/manydata/man/find_year.Rd          |only
 manydata-1.1.3/manydata/man/pluck.Rd              |    2 
 manydata-1.1.3/manydata/man/recollect.Rd          |    2 
 manydata-1.1.3/manydata/man/repaint.Rd            |    2 
 manydata-1.1.3/manydata/man/resolving.Rd          |    2 
 manydata-1.1.3/manydata/man/reunite.Rd            |    2 
 manydata-1.1.3/manydata/man/scores.Rd             |only
 manydata-1.1.3/manydata/man/transmutate.Rd        |    2 
 39 files changed, 160 insertions(+), 61 deletions(-)

More information about manydata at CRAN
Permanent link

Package kstMatrix updated to version 1.3-0 with previous version 1.2-0 dated 2025-04-02

Title: Basic Functions in Knowledge Space Theory Using Matrix Representation
Description: Knowledge space theory by Doignon and Falmagne (1999) <doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical framework, which proposes mathematical formalisms to operationalize knowledge structures in a particular domain. The 'kstMatrix' package provides basic functionalities to generate, handle, and manipulate knowledge structures and knowledge spaces. Opposed to the 'kst' package, 'kstMatrix' uses matrix representations for knowledge structures. Furthermore, 'kstMatrix' contains several knowledge spaces developed by the research group around Cornelia Dowling through querying experts.
Author: Cord Hockemeyer [aut, cre], Wai Wong [ctb]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>

Diff between kstMatrix versions 1.2-0 dated 2025-04-02 and 1.3-0 dated 2025-09-30

 Changelog                     |    4 +
 DESCRIPTION                   |   12 +--
 MD5                           |  127 +++++++++++++++++++++++-------------------
 NAMESPACE                     |    9 ++
 R/cad.R                       |   63 ++++++++++----------
 R/fractions.R                 |   55 ++++++++----------
 R/kmSRdiagram.R               |    1 
 R/kmassess.R                  |only
 R/kmassessbayesian.R          |only
 R/kmassesshalfsplit.R         |only
 R/kmassessinformative.R       |only
 R/kmassessmultiplicative.R    |only
 R/kmassesssimulation.R        |only
 R/kmbasis.R                   |   93 +++++++++++++++---------------
 R/kmbasisdiagram.R            |    1 
 R/kmcolors.R                  |    2 
 R/kmdist.R                    |    1 
 R/kmdoubleequal.R             |only
 R/kmeqreduction.R             |    1 
 R/kmfringe.R                  |    1 
 R/kmgenerate.R                |    2 
 R/kmhasse.R                   |    1 
 R/kmiswellgraded.R            |   93 +++++++++++++++---------------
 R/kmneighbourhood.R           |    1 
 R/kmnotions.R                 |    1 
 R/kmsassess.R                 |only
 R/kmsf2basis.R                |    2 
 R/kmsimulate.R                |  125 ++++++++++++++++++++---------------------
 R/kmsrvalidate.R              |    3 
 R/kmsurmisefunction.R         |    1 
 R/kmsurmiserelation.R         |    1 
 R/kmsymmsetdiff.R             |    3 
 R/kmtrivial.R                 |    1 
 R/kmunionclosure.R            |   97 +++++++++++++++-----------------
 R/kmvalidate.R                |    1 
 R/readwrite.R                 |   67 ++++++++++------------
 R/xpl.R                       |    1 
 build/partial.rdb             |only
 build/vignette.rds            |binary
 inst/doc/kstMatrix.html       |   62 ++++++++++----------
 man/cad.Rd                    |   10 +--
 man/fractions.Rd              |    6 -
 man/kmSRdiagram.Rd            |    2 
 man/kmSRvalidate.Rd           |    5 -
 man/kmassess.Rd               |only
 man/kmassessbayesian.Rd       |only
 man/kmassesshalfsplit.Rd      |only
 man/kmassessinformative.Rd    |only
 man/kmassessmentsimulation.Rd |only
 man/kmassessmultiplicative.Rd |only
 man/kmbasis.Rd                |    2 
 man/kmbasisdiagram.Rd         |    2 
 man/kmcolors.Rd               |    8 ++
 man/kmdist.Rd                 |    1 
 man/kmdoubleequal.Rd          |only
 man/kmeqreduction.Rd          |    1 
 man/kmfringe.Rd               |    1 
 man/kmgenerate.Rd             |    2 
 man/kmhasse.Rd                |    4 -
 man/kmiswellgraded.Rd         |    5 -
 man/kmneighbourhood.Rd        |    1 
 man/kmnotions.Rd              |    1 
 man/kmsassess.Rd              |only
 man/kmsf2basis.Rd             |    8 ++
 man/kmsimulate.Rd             |    7 --
 man/kmsurmisefunction.Rd      |    2 
 man/kmsurmiserelation.Rd      |    2 
 man/kmsymmsetdiff.Rd          |    8 ++
 man/kmtrivial.Rd              |    1 
 man/kmunionclosure.Rd         |    8 +-
 man/kmvalidate.Rd             |    9 +-
 man/readwrite.Rd              |   10 +--
 man/xpl.Rd                    |    4 -
 73 files changed, 482 insertions(+), 460 deletions(-)

More information about kstMatrix at CRAN
Permanent link

Package surveydown updated to version 0.13.3 with previous version 0.13.0 dated 2025-08-20

Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys are composed of two files: a survey.qmd 'Quarto' file defining the survey content (pages, questions, etc), and an app.R file defining a 'shiny' app with global settings (libraries, database configuration, etc.) and server configuration options (e.g., conditional skipping / display, etc.). Survey data collected from respondents is stored in a 'PostgreSQL' database. Features include controls for conditional skip logic (skip to a page based on an answer to a question), conditional display logic (display a question based on an answer to a question), a customizable progress bar, and a wide variety of question types, including multiple choice (single choice and multiple choices), select, text, numeric, multiple choice buttons, text area, and dates. Because the surveys render into a 'shiny' app, designers can also leverage the reactive capabilities of 'shiny' to create dynamic and interactive surveys.
Author: John Paul Helveston [aut, cre, cph] , Pingfan Hu [aut, cph] , Bogdan Bunea [aut, cph] , Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>

Diff between surveydown versions 0.13.0 dated 2025-08-20 and 0.13.3 dated 2025-09-30

 DESCRIPTION                     |    8 
 MD5                             |   36 +-
 NAMESPACE                       |    1 
 NEWS.md                         |   19 +
 R/config.R                      |   19 -
 R/server.R                      |  638 ++++++++++++++++++++++++++++++++--------
 R/ui.R                          |   85 +++--
 R/util.R                        |  389 ++++++++++++++++++++++--
 README.md                       |   42 ++
 inst/CITATION                   |   14 
 inst/css/surveydown.css         |   97 ++++++
 inst/js/highlight_unanswered.js |   72 ++++
 inst/template/README.md         |only
 inst/template/app.R             |    8 
 inst/template/survey.qmd        |   17 +
 man/sd_create_survey.Rd         |    5 
 man/sd_show_if.Rd               |    2 
 man/sd_skip_forward.Rd          |   42 --
 man/sd_skip_if.Rd               |   47 ++
 man/sd_stop_if.Rd               |only
 20 files changed, 1264 insertions(+), 277 deletions(-)

More information about surveydown at CRAN
Permanent link

Package randomForestSRC updated to version 3.4.2 with previous version 3.4.1 dated 2025-06-07

Title: Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut], Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>

Diff between randomForestSRC versions 3.4.1 dated 2025-06-07 and 3.4.2 dated 2025-09-30

 randomForestSRC-3.4.1/randomForestSRC/R/find.interaction.rfsrc.R     |only
 randomForestSRC-3.4.1/randomForestSRC/R/stat.split.rfsrc.R           |only
 randomForestSRC-3.4.1/randomForestSRC/R/synthetic.rfsrc.R            |only
 randomForestSRC-3.4.1/randomForestSRC/R/utilities_sgreedy.R          |only
 randomForestSRC-3.4.1/randomForestSRC/R/utilities_tdc.R              |only
 randomForestSRC-3.4.1/randomForestSRC/man/find.interaction.rfsrc.Rd  |only
 randomForestSRC-3.4.1/randomForestSRC/man/stat.split.rfsrc.Rd        |only
 randomForestSRC-3.4.1/randomForestSRC/man/synthetic.rfsrc.Rd         |only
 randomForestSRC-3.4.1/randomForestSRC/src/Makevars.win               |only
 randomForestSRC-3.4.1/randomForestSRC/src/randomForestSRC.c          |only
 randomForestSRC-3.4.1/randomForestSRC/src/randomForestSRC.h          |only
 randomForestSRC-3.4.2/randomForestSRC/DESCRIPTION                    |    8 
 randomForestSRC-3.4.2/randomForestSRC/MD5                            |  215 +++-
 randomForestSRC-3.4.2/randomForestSRC/NAMESPACE                      |   10 
 randomForestSRC-3.4.2/randomForestSRC/R/generic.predict.rfsrc.R      |   58 -
 randomForestSRC-3.4.2/randomForestSRC/R/partial.rfsrc.R              |   58 -
 randomForestSRC-3.4.2/randomForestSRC/R/predict.rfsrc.R              |    2 
 randomForestSRC-3.4.2/randomForestSRC/R/print.rfsrc.R                |  515 ++++------
 randomForestSRC-3.4.2/randomForestSRC/R/quantreg.rfsrc.R             |    1 
 randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.R                      |  110 --
 randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.anonymous.R            |    1 
 randomForestSRC-3.4.2/randomForestSRC/R/rfsrc.fast.R                 |    1 
 randomForestSRC-3.4.2/randomForestSRC/R/subsample.rfsrc.R            |    1 
 randomForestSRC-3.4.2/randomForestSRC/R/tune.nodesize.rfsrc.R        |  243 +++-
 randomForestSRC-3.4.2/randomForestSRC/R/tune.rfsrc.R                 |  463 ++++++--
 randomForestSRC-3.4.2/randomForestSRC/R/utilities.R                  |  140 --
 randomForestSRC-3.4.2/randomForestSRC/R/utilities_data.R             |    8 
 randomForestSRC-3.4.2/randomForestSRC/R/utilities_imbalanced.R       |  331 ++++--
 randomForestSRC-3.4.2/randomForestSRC/configure                      |  220 +++-
 randomForestSRC-3.4.2/randomForestSRC/configure.ac                   |   88 +
 randomForestSRC-3.4.2/randomForestSRC/data/breast.rda                |binary
 randomForestSRC-3.4.2/randomForestSRC/data/follic.rda                |binary
 randomForestSRC-3.4.2/randomForestSRC/data/hd.rda                    |binary
 randomForestSRC-3.4.2/randomForestSRC/data/housing.rda               |binary
 randomForestSRC-3.4.2/randomForestSRC/data/nutrigenomic.rda          |binary
 randomForestSRC-3.4.2/randomForestSRC/data/pbc.rda                   |binary
 randomForestSRC-3.4.2/randomForestSRC/data/peakVO2.rda               |binary
 randomForestSRC-3.4.2/randomForestSRC/data/vdv.rda                   |binary
 randomForestSRC-3.4.2/randomForestSRC/data/veteran.rda               |binary
 randomForestSRC-3.4.2/randomForestSRC/data/wihs.rda                  |binary
 randomForestSRC-3.4.2/randomForestSRC/data/wine.rda                  |binary
 randomForestSRC-3.4.2/randomForestSRC/inst/NEWS                      |   11 
 randomForestSRC-3.4.2/randomForestSRC/man/breast.Rd                  |    1 
 randomForestSRC-3.4.2/randomForestSRC/man/max.subtree.rfsrc.Rd       |    3 
 randomForestSRC-3.4.2/randomForestSRC/man/plot.rfsrc.Rd              |    2 
 randomForestSRC-3.4.2/randomForestSRC/man/plot.variable.rfsrc.Rd     |    1 
 randomForestSRC-3.4.2/randomForestSRC/man/predict.rfsrc.Rd           |    7 
 randomForestSRC-3.4.2/randomForestSRC/man/print.rfsrc.Rd             |    2 
 randomForestSRC-3.4.2/randomForestSRC/man/randomForestSRC_package.Rd |    3 
 randomForestSRC-3.4.2/randomForestSRC/man/rfsrc.Rd                   |    7 
 randomForestSRC-3.4.2/randomForestSRC/man/tune.rfsrc.Rd              |  212 ++--
 randomForestSRC-3.4.2/randomForestSRC/man/utilities_internal.Rd      |    5 
 randomForestSRC-3.4.2/randomForestSRC/src/R_init_randomForestSRC.c   |   28 
 randomForestSRC-3.4.2/randomForestSRC/src/bootstrap.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/bootstrap.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/cindex.c                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/cindex.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/classification.c           |only
 randomForestSRC-3.4.2/randomForestSRC/src/classification.h           |only
 randomForestSRC-3.4.2/randomForestSRC/src/diagnostic.c               |only
 randomForestSRC-3.4.2/randomForestSRC/src/diagnostic.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/distance.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/distance.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/entry.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/entry.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/entryGeneric.c             |only
 randomForestSRC-3.4.2/randomForestSRC/src/entryGeneric.h             |only
 randomForestSRC-3.4.2/randomForestSRC/src/error.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/error.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/external.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/factor.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/factorOps.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/factorOps.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/global.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/importance.c               |only
 randomForestSRC-3.4.2/randomForestSRC/src/importance.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/importanceAnti.c           |only
 randomForestSRC-3.4.2/randomForestSRC/src/importanceAnti.h           |only
 randomForestSRC-3.4.2/randomForestSRC/src/importancePerm.c           |only
 randomForestSRC-3.4.2/randomForestSRC/src/importancePerm.h           |only
 randomForestSRC-3.4.2/randomForestSRC/src/importanceRand.c           |only
 randomForestSRC-3.4.2/randomForestSRC/src/importanceRand.h           |only
 randomForestSRC-3.4.2/randomForestSRC/src/impute.c                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/impute.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/internal.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/leafLink.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/leafLink.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/marginal.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/marginal.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/nativeInfo.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/nativeUtil.c               |only
 randomForestSRC-3.4.2/randomForestSRC/src/nativeUtil.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/node.h                     |only
 randomForestSRC-3.4.2/randomForestSRC/src/nodeOps.c                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/nodeOps.h                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/nrutil.c                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/nrutil.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/partial.c                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/partial.h                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/polarity.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/polarity.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/processEnsemble.c          |only
 randomForestSRC-3.4.2/randomForestSRC/src/processEnsemble.h          |only
 randomForestSRC-3.4.2/randomForestSRC/src/quantile.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/quantile.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/random.c                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/random.h                   |only
 randomForestSRC-3.4.2/randomForestSRC/src/regression.c               |only
 randomForestSRC-3.4.2/randomForestSRC/src/regression.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/rfsrc.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/rfsrc.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/rfsrcUtil.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/rfsrcUtil.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/sampling.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/sampling.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/sexpOutgoing.c             |only
 randomForestSRC-3.4.2/randomForestSRC/src/sexpOutgoing.h             |only
 randomForestSRC-3.4.2/randomForestSRC/src/snpAuxiliaryInfo.h         |only
 randomForestSRC-3.4.2/randomForestSRC/src/sortedLink.c               |only
 randomForestSRC-3.4.2/randomForestSRC/src/sortedLink.h               |only
 randomForestSRC-3.4.2/randomForestSRC/src/sources.list               |only
 randomForestSRC-3.4.2/randomForestSRC/src/split.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/split.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitClas.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitClas.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitCustom.c              |  353 ------
 randomForestSRC-3.4.2/randomForestSRC/src/splitCustom.h              |   59 -
 randomForestSRC-3.4.2/randomForestSRC/src/splitCustomDriver.c        |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitCustomDriver.h        |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitGreedy.c              |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitGreedy.h              |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitInfo.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitMahalanobis.c         |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitMahalanobis.h         |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitMult.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitMult.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitQuantile.c            |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitQuantile.h            |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitRegr.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitRegr.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitSurv.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitSurv.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitUtil.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitUtil.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitUtilSurv.c            |only
 randomForestSRC-3.4.2/randomForestSRC/src/splitUtilSurv.h            |only
 randomForestSRC-3.4.2/randomForestSRC/src/stack.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/stack.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackOutput.c              |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackOutput.h              |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackOutputQQ.c            |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackOutputQQ.h            |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackParallel.c            |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackParallel.h            |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackPreDefined.c          |only
 randomForestSRC-3.4.2/randomForestSRC/src/stackPreDefined.h          |only
 randomForestSRC-3.4.2/randomForestSRC/src/survival.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/survival.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/survivalE.c                |only
 randomForestSRC-3.4.2/randomForestSRC/src/survivalE.h                |only
 randomForestSRC-3.4.2/randomForestSRC/src/svdUtil.c                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/svdUtil.h                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/termOps.c                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/termOps.h                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/terminal.h                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/trace.c                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/trace.h                    |only
 randomForestSRC-3.4.2/randomForestSRC/src/tree.c                     |only
 randomForestSRC-3.4.2/randomForestSRC/src/tree.h                     |only
 randomForestSRC-3.4.2/randomForestSRC/src/treeJIT.c                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/treeJIT.h                  |only
 randomForestSRC-3.4.2/randomForestSRC/src/treeUtil.c                 |only
 randomForestSRC-3.4.2/randomForestSRC/src/treeUtil.h                 |only
 173 files changed, 1568 insertions(+), 1599 deletions(-)

More information about randomForestSRC at CRAN
Permanent link

Package ivo.table updated to version 0.7.0 with previous version 0.6 dated 2025-01-15

Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre], Kajsa Grind [aut], Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>

Diff between ivo.table versions 0.6 dated 2025-01-15 and 0.7.0 dated 2025-09-30

 DESCRIPTION                |   12 ++--
 MD5                        |   29 +++++++---
 NAMESPACE                  |   57 +++++++++++++++++++++
 NEWS.md                    |    3 +
 R/ivo_table_gt.R           |only
 R/ivo_tables.R             |   16 ++---
 README.md                  |    4 +
 build/vignette.rds         |binary
 inst/doc/ivo_table.R       |    8 +-
 inst/doc/ivo_table.Rmd     |    6 +-
 inst/doc/ivo_table.html    |  122 ++++++++++++++++++++++++++-------------------
 inst/doc/ivo_table_gt.R    |only
 inst/doc/ivo_table_gt.Rmd  |only
 inst/doc/ivo_table_gt.html |only
 man/figures                |only
 man/ivo_gt_theme.Rd        |only
 man/ivo_table_gt.Rd        |only
 vignettes/ivo_table.Rmd    |    6 +-
 vignettes/ivo_table_gt.Rmd |only
 vignettes/patchwork.png    |only
 20 files changed, 181 insertions(+), 82 deletions(-)

More information about ivo.table at CRAN
Permanent link

Package stRoke updated to version 25.9.2 with previous version 25.9.1 dated 2025-09-02

Title: Clinical Stroke Research
Description: A collection of tools for clinical trial data management and analysis in research and teaching. The package is mainly collected for personal use, but any use beyond that is encouraged. This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added. Version follows months and year. See NEWS/Changelog for release notes. This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>). The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>. The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>

Diff between stRoke versions 25.9.1 dated 2025-09-02 and 25.9.2 dated 2025-09-30

 DESCRIPTION           |    6 +-
 MD5                   |   11 +++-
 NEWS.md               |    4 +
 R/trial.R             |only
 data/trial.rda        |only
 inst/WORDLIST         |    2 
 inst/doc/toolbox.html |  114 +++++++++++++++++++++++++-------------------------
 man/trial.Rd          |only
 8 files changed, 73 insertions(+), 64 deletions(-)

More information about stRoke at CRAN
Permanent link

Package RcppCWB updated to version 0.6.10 with previous version 0.6.9 dated 2025-09-27

Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>). The 'CWB' relies on 'pcre2' (BSD license, see <https://github.com/PCRE2Project/pcre2/blob/master/LICENCE.md>) and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>). See the file LICENSE.note for further information. The package includes modified code of the 'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre], Bernard Desgraupes [aut], Sylvain Loiseau [aut], Oliver Christ [ctb], Bruno Maximilian Schulze [ctb], Stephanie Evert [ctb], Arne Fitschen [ctb], Jeroen Ooms [ctb], Marius Bertram [ctb], Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>

Diff between RcppCWB versions 0.6.9 dated 2025-09-27 and 0.6.10 dated 2025-09-30

 DESCRIPTION                      |    8 ++++----
 MD5                              |   10 +++++-----
 NEWS.md                          |    7 ++++++-
 inst/doc/vignette.html           |    4 ++--
 src/cwb/cl/registry.tab.c        |   14 +++++++++++++-
 src/cwb/cqp/context_descriptor.c |    8 ++++++++
 6 files changed, 38 insertions(+), 13 deletions(-)

More information about RcppCWB at CRAN
Permanent link

Package openssl updated to version 2.3.4 with previous version 2.3.3 dated 2025-05-26

Title: Toolkit for Encryption, Signatures and Certificates Based on OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] , Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between openssl versions 2.3.3 dated 2025-05-26 and 2.3.4 dated 2025-09-30

 DESCRIPTION                     |    6 ++---
 MD5                             |   22 +++++++++---------
 NEWS                            |    3 ++
 build/vignette.rds              |binary
 inst/doc/bignum.html            |   32 +++++++++++++-------------
 inst/doc/crypto_hashing.html    |    8 +++---
 inst/doc/keys.html              |   48 ++++++++++++++++++++--------------------
 inst/doc/secure_rng.html        |   18 +++++++--------
 src/cert.c                      |    9 ++++---
 src/info.c                      |    5 ++++
 tests/testthat/helper-version.R |    2 -
 tests/testthat/test_ssl_ctx.R   |    3 +-
 12 files changed, 83 insertions(+), 73 deletions(-)

More information about openssl at CRAN
Permanent link

New package writeAlizer with initial version 1.6.4
Package: writeAlizer
Title: Generate Predicted Writing Quality Scores
Version: 1.6.4
Date: 2025-09-23
Description: Imports variables from 'ReaderBench' (Dascalu et al., 2018)<doi:10.1007/978-3-319-66610-5_48>, 'Coh-Metrix' (McNamara et al., 2014)<doi:10.1017/CBO9780511894664>, and/or 'GAMET' (Crossley et al., 2019) <doi:10.17239/jowr-2019.11.02.01> output files; downloads predictive scoring models described in Mercer & Cannon (2022)<doi:10.31244/jero.2022.01.03> and Mercer et al.(2021)<doi:10.1177/0829573520987753>; and generates predicted writing quality and curriculum-based measurement (McMaster & Espin, 2007)<doi:10.1177/00224669070410020301> scores.
License: GPL-3
URL: https://github.com/shmercer/writeAlizer/
BugReports: https://github.com/shmercer/writeAlizer/issues
Depends: R (>= 2.10)
Imports: caret, digest, dplyr, glue, magrittr, stats, tidyselect, utils
Suggests: caretEnsemble, Cubist, earth, gbm, glmnet, kernlab, pls, randomForest, testthat (>= 3.1.0), withr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2025-09-23 18:59:25 UTC; shmer
Author: Sterett H. Mercer [aut, cre]
Maintainer: Sterett H. Mercer <sterett.mercer@ubc.ca>
Repository: CRAN
Date/Publication: 2025-09-30 08:40:02 UTC

More information about writeAlizer at CRAN
Permanent link

New package TwoDcDAPSA with initial version 0.1.0
Package: TwoDcDAPSA
Title: Calculate TwoDcDAPSA: PROs-Joint Contrast (PJC) Score and Quartiles
Version: 0.1.0
Description: Provides a calculator for the two-dimensional clinical Disease Activity index for Psoriatic Arthritis (TwoDcDAPSA), a principal component-derived measure that complements the conventional clinical DAPSA score. The TwoDcDAPSA captures residual variation in patient-reported outcomes (pain and patient global assessment) and joint counts (swollen and tender) after adjusting for standardized cDAPSA using natural spline coefficients derived from published models. Residuals are standardized and combined with fixed principal component loadings to yield a continuous PROs-Joint Contrast (PJC) score and quartile groupings. The package applies pre-specified coefficients and loadings to new datasets but does not estimate spline models or principal components itself.
License: MIT + file LICENSE
Depends: R (>= 3.6)
Imports: dplyr, splines, rlang
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2025-09-23 19:26:21 UTC; nmeng2
Author: Ning Meng [aut, cre], Ji Soo Kim [aut], Ana-Maria Orbai [aut], Scott L. Zeger [aut]
Maintainer: Ning Meng <nmeng2@jh.edu>
Repository: CRAN
Date/Publication: 2025-09-30 08:40:08 UTC

More information about TwoDcDAPSA at CRAN
Permanent link

New package twbparser with initial version 0.2.3
Package: twbparser
Title: Parse 'Tableau' Workbooks into Functional Data
Version: 0.2.3
Description: High-performance parsing of 'Tableau' workbook files into tidy data frames and dependency graphs for other visualization tools like R 'Shiny' or 'Power BI' replication.
License: MIT + file LICENSE
URL: https://prigasg.github.io/twbparser/, https://github.com/PrigasG/twbparser
BugReports: https://github.com/PrigasG/twbparser/issues
Depends: R (>= 4.2.0)
Imports: dplyr, igraph, purrr, R6, rlang, stringr, tibble, tidyr, withr, xml2
Suggests: cli, covr, ggraph, knitr, lintr, magrittr, optparse, rmarkdown, spelling, styler, testthat (>= 3.0.0), tidygraph, vctrs, zip
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2025-09-23 16:26:11 UTC; garthur
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 08:30:02 UTC

More information about twbparser at CRAN
Permanent link

New package tidyusmacro with initial version 0.1.0
Package: tidyusmacro
Title: Downloading and Cleaning U.S. Macroeconomic Data
Version: 0.1.0
Description: Utilities to retrieve and tidy U.S. macroeconomic data series from public government data providers. Functions streamline access to series from the Federal Reserve Bank of St. Louis Federal Reserve Economic Data (FRED), the Bureau of Labor Statistics flat files, and the Bureau of Economic Analysis National Income and Product Accounts tables, then return consistent, tidy data frames ready for modeling and graphics. The package includes helpers for date alignment, log-linear projections, and common macro diagnostics, along with convenience plot builders for quick publication-quality charts.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
LazyData: true
Imports: dplyr, ggplot2, magrittr, purrr, readr, rlang, stringi, tidyr
NeedsCompilation: no
Packaged: 2025-09-24 03:37:40 UTC; mtkonczal
Author: Mike Konczal [aut, cre]
Maintainer: Mike Konczal <konczal@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 08:50:02 UTC

More information about tidyusmacro at CRAN
Permanent link

New package streamsampler with initial version 0.1.0
Package: streamsampler
Title: Characterize and Subsample Stream Data
Version: 0.1.0
Description: Characterize daily stream discharge and water quality data and subsample water quality data. Provide dates, discharge, and water quality measurements and 'streamsampler' can find gaps, get summary statistics, and subsample according to common stream sampling protocols. Stream sampling protocols are described in Lee et al. (2016) <doi:10.1016/j.jhydrol.2016.08.059> and Lee et al. (2019) <doi:10.3133/sir20195084>.
License: CC0
URL: https://github.com/Kyle-Hurley/streamsampler
BugReports: https://github.com/Kyle-Hurley/streamsampler/issues
Encoding: UTF-8
Suggests: dataRetrieval (>= 2.7.16), knitr, rmarkdown, testthat (>= 3.0.0)
Depends: R (>= 4.1)
LazyData: true
Imports: slider (>= 0.3.1), stats
VignetteBuilder: knitr
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at https://www.usgs.gov/information-policies-and-instructions/copyrights-and-credits
NeedsCompilation: no
Packaged: 2025-09-23 12:25:18 UTC; kphur
Author: Kyle Hurley [aut, cre, cph] , Jeff Chanat [aut]
Maintainer: Kyle Hurley <kp.hurley87@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 08:30:09 UTC

More information about streamsampler at CRAN
Permanent link

New package splineplot with initial version 0.1.1
Package: splineplot
Title: Visualization of Spline Effects in GAM and GLM Models
Version: 0.1.1
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Description: Creates 'ggplot2'-based visualizations of smooth effects from GAM (Generalized Additive Models) fitted with 'mgcv' and spline effects from GLM (Generalized Linear Models). Supports interaction terms and provides hazard ratio plots with histograms for survival analysis. Wood (2017, ISBN:9781498728331) provides comprehensive methodology for generalized additive models.
License: Apache License 2.0
Encoding: UTF-8
Imports: ggplot2 (>= 3.0.0), stats
Suggests: mgcv, survival, splines, testthat (>= 3.0.0), knitr, rmarkdown, covr, pkgdown
VignetteBuilder: knitr
URL: https://github.com/jinseob2kim/splineplot, https://jinseob2kim.github.io/splineplot/
BugReports: https://github.com/jinseob2kim/splineplot/issues
NeedsCompilation: no
Packaged: 2025-09-23 15:09:22 UTC; js
Author: Jinseob Kim [aut, cre] , Zarathu [cph, fnd]
Repository: CRAN
Date/Publication: 2025-09-30 08:30:14 UTC

More information about splineplot at CRAN
Permanent link

New package SFHNV with initial version 0.1.0
Package: SFHNV
Title: Structural Forest for the Heterogeneous Newsvendor Model
Version: 0.1.0
Description: Implements the structural forest methodology for the heterogeneous newsvendor model. The package provides tools to prepare data, fit honest newsvendor trees and forests, and obtain point and distributional predictions for demand decisions under uncertainty.
URL: https://github.com/MurphyLiCN/SFHNV
License: MIT + file LICENSE
Depends: R (>= 3.6)
Imports: stats
Suggests: future.apply, testthat (>= 3.0.0)
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2025-09-22 01:56:31 UTC; murphy
Author: Mengfei Li [aut, cre]
Maintainer: Mengfei Li <murphy.li.cn@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 08:50:14 UTC

More information about SFHNV at CRAN
Permanent link

Package satin updated to version 1.2.0 with previous version 1.1.0 dated 2022-09-22

Title: Visualisation and Analysis of Ocean Data Derived from Satellites
Description: With 'satin' functions, visualisation, data extraction and further analysis like producing climatologies from several images, and anomalies of satellite derived ocean data can be easily done. Reading functions can import a user defined geographical extent of data stored in netCDF files. Currently supported ocean data sources include NASA's Oceancolor web page <https://oceancolor.gsfc.nasa.gov/>, sensors VIIRS-SNPP; MODIS-Terra; MODIS-Aqua; and SeaWiFS. Available variables from this source includes chlorophyll concentration, sea surface temperature (SST), and several others. Data sources specific for SST that can be imported too includes Pathfinder AVHRR <https://www.ncei.noaa.gov/products/avhrr-pathfinder-sst> and GHRSST <https://www.ghrsst.org/>. In addition, ocean productivity data produced by Oregon State University can also be handled previous conversion from HDF4 to HDF5 format. Many other ocean variables can be processed by importing netCDF data files from [...truncated...]
Author: Hector Villalobos [aut, cre] , Eduardo Gonzalez-Rodriguez [aut]
Maintainer: Hector Villalobos <hvillalo@ipn.mx>

Diff between satin versions 1.1.0 dated 2022-09-22 and 1.2.0 dated 2025-09-30

 DESCRIPTION        |   26 +++++++++++++++++++-------
 MD5                |   52 +++++++++++++++++++++++++++-------------------------
 NEWS               |    4 ++++
 NEWS.md            |    8 +++++++-
 R/climatology.R    |    7 +++++--
 R/imageScale.R     |    2 +-
 R/name_ncvars.R    |only
 R/plot.satin.R     |   25 +++++++++++++++----------
 R/read.cmems.R     |    6 ++++--
 R/satinDataframe.R |    4 ++--
 R/satinMean.R      |    4 ++--
 README.md          |    3 ++-
 data/dchl.rda      |binary
 data/dcmems.rda    |binary
 data/dmap.rda      |binary
 data/dnpp.rda      |binary
 data/dsst.rda      |binary
 man/crop.Rd        |    2 +-
 man/dchl.Rd        |    4 ++--
 man/dnpp.Rd        |    4 ++--
 man/dsst.Rd        |    4 ++--
 man/isolines.Rd    |    4 ++--
 man/name_ncvars.Rd |only
 man/plot.satin.Rd  |    9 +++++----
 man/read.cmems.Rd  |    5 +++--
 man/read.ghrsst.Rd |    2 +-
 man/read.osunpp.Rd |    2 +-
 man/satinMean.Rd   |    4 +++-
 28 files changed, 110 insertions(+), 71 deletions(-)

More information about satin at CRAN
Permanent link

Package rpaleoclim updated to version 1.1.0 with previous version 1.0.1 dated 2023-08-09

Title: Download Paleoclimate Data from 'PaleoClim'
Description: 'PaleoClim' <http://www.paleoclim.org> (Brown et al. 2019, <doi:10.1038/sdata.2018.254>) is a set of free, high resolution paleoclimate surfaces covering the whole globe. It includes data on surface temperature, precipitation and the standard bioclimatic variables commonly used in ecological modelling, derived from the 'HadCM3' general circulation model and downscaled to a spatial resolution of up to 2.5 minutes. Simulations are available for key time periods from the Late Holocene to mid-Pliocene. Data on current and Last Glacial Maximum climate is derived from 'CHELSA' (Karger et al. 2017, <doi:10.1038/sdata.2017.122>) and reprocessed by 'PaleoClim' to match their format; it is available at up to 30 seconds resolution. This package provides a simple interface for downloading 'PaleoClim' data in R, with support for caching and filtering retrieved data by period, resolution, and geographic extent.
Author: Joe Roe [aut, cre, cph]
Maintainer: Joe Roe <joe@joeroe.io>

Diff between rpaleoclim versions 1.0.1 dated 2023-08-09 and 1.1.0 dated 2025-09-30

 rpaleoclim-1.0.1/rpaleoclim/inst/doc/rpaleoclim.R                    |only
 rpaleoclim-1.0.1/rpaleoclim/tests/testthat/helper-download.R         |only
 rpaleoclim-1.1.0/rpaleoclim/DESCRIPTION                              |   12 
 rpaleoclim-1.1.0/rpaleoclim/MD5                                      |   30 -
 rpaleoclim-1.1.0/rpaleoclim/NEWS.md                                  |    7 
 rpaleoclim-1.1.0/rpaleoclim/R/paleoclim.R                            |   38 +-
 rpaleoclim-1.1.0/rpaleoclim/R/rpaleoclim-package.R                   |    4 
 rpaleoclim-1.1.0/rpaleoclim/README.md                                |    4 
 rpaleoclim-1.1.0/rpaleoclim/build/partial.rdb                        |binary
 rpaleoclim-1.1.0/rpaleoclim/build/vignette.rds                       |binary
 rpaleoclim-1.1.0/rpaleoclim/inst/CITATION                            |    6 
 rpaleoclim-1.1.0/rpaleoclim/inst/doc/rpaleoclim.Rmd                  |  157 ++++++----
 rpaleoclim-1.1.0/rpaleoclim/inst/doc/rpaleoclim.html                 |   52 +--
 rpaleoclim-1.1.0/rpaleoclim/man/figures/README-rpaleoclim-demo-1.png |binary
 rpaleoclim-1.1.0/rpaleoclim/tests/testthat/test-paleoclim.R          |   40 +-
 rpaleoclim-1.1.0/rpaleoclim/vignettes/eg-paleoclim-crop-1.png        |only
 rpaleoclim-1.1.0/rpaleoclim/vignettes/rpaleoclim.Rmd                 |  157 ++++++----
 rpaleoclim-1.1.0/rpaleoclim/vignettes/rpaleoclim.Rmd.source          |only
 18 files changed, 309 insertions(+), 198 deletions(-)

More information about rpaleoclim at CRAN
Permanent link

Package rmarchingcubes updated to version 0.1.4 with previous version 0.1.2 dated 2021-06-16

Title: Calculate 3D Contour Meshes Using the Marching Cubes Algorithm
Description: A port of the C++ routine for applying the marching cubes algorithm written by Thomas Lewiner et al. (2012) <doi:10.1080/10867651.2003.10487582> into an R package. The package supplies the contour3d() function, which takes a 3-dimensional array of voxel data and calculates the vertices, vertex normals, and faces for a 3d mesh representing the contour(s) at a given level.
Author: S. H. Wilks [aut, cre], Thomas Lewiner [aut]
Maintainer: S. H. Wilks <sam.wilks@unimelb.edu.au>

Diff between rmarchingcubes versions 0.1.2 dated 2021-06-16 and 0.1.4 dated 2025-09-30

 DESCRIPTION                           |   25 +
 MD5                                   |   31 +-
 NEWS.md                               |   11 
 README.md                             |    9 
 build/vignette.rds                    |binary
 inst/doc/calculating_3d_contours.R    |   48 +--
 inst/doc/calculating_3d_contours.Rmd  |    2 
 inst/doc/calculating_3d_contours.html |  442 +++++++++++++++++++++++++---------
 src/LookUpTable.h                     |   96 +++----
 src/Makevars                          |   12 
 src/Makevars.win                      |   12 
 src/MarchingCubes.cpp                 |    6 
 src/MarchingCubes.h                   |    2 
 src/RcppExports.cpp                   |    5 
 tests/testthat/_snaps                 |only
 tests/testthat/test-marchingcubes.R   |   42 ++-
 vignettes/calculating_3d_contours.Rmd |    2 
 17 files changed, 488 insertions(+), 257 deletions(-)

More information about rmarchingcubes at CRAN
Permanent link

New package powergrid with initial version 0.5.0
Package: powergrid
Title: Power Analysis Across a Grid of Assumptions
Version: 0.5.0
Description: Evaluate a function across a grid of parameters. The function may be evaluated once, or many times for simulation. Parallel computing is facilitated. Utilities aim at performing analyses of power and sample size, allowing for easy search of minimum n (or min/max of any other parameter) to achieve a desired minimal level of power (or maximum of any other objective). Plotting functions are included that present the dependency of n and power in relation to further assumptions.
License: GPL-3
Encoding: UTF-8
Suggests: future.apply (>= 1.11.2), future (>= 1.33.2), knitr, rmarkdown, testthat (>= 3.0.0)
Imports: stats, methods
VignetteBuilder: knitr
URL: https://github.com/SwissClinicalTrialOrganisation/powergrid
BugReports: https://github.com/SwissClinicalTrialOrganisation/powergrid/issues
NeedsCompilation: no
Packaged: 2025-09-23 09:57:22 UTC; gilles
Author: Gilles Dutilh [aut, cre] , Richard Charles Allen [aut]
Maintainer: Gilles Dutilh <info@gillesdutilh.com>
Repository: CRAN
Date/Publication: 2025-09-30 08:20:02 UTC

More information about powergrid at CRAN
Permanent link

Package pollen updated to version 0.83.0 with previous version 0.82.0 dated 2021-12-03

Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data. Available features include determination of pollen season limits, replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>), calculation of growing degree days (Baskerville and Emin (1969) <doi:10.2307/1933912>), and determination of the base temperature for growing degree days (Yang et al. (1995) <doi:10.1016/0168-1923(94)02185-M).
Author: Jakub Nowosad [aut, cre]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>

Diff between pollen versions 0.82.0 dated 2021-12-03 and 0.83.0 dated 2025-09-30

 DESCRIPTION                 |   14 -
 MD5                         |   21 -
 README.md                   |   33 +-
 build/partial.rdb           |only
 build/vignette.rds          |binary
 inst/CITATION               |   20 -
 inst/doc/gdd.R              |    2 
 inst/doc/gdd.html           |  479 ++++++++++++++++++++++++++---------
 inst/doc/intro.R            |   12 
 inst/doc/intro.html         |  596 ++++++++++++++++++++++++++++++--------------
 man/pollen-package.Rd       |    4 
 tests/testthat/test-zeros.R |   14 -
 12 files changed, 831 insertions(+), 364 deletions(-)

More information about pollen at CRAN
Permanent link

Package OSMscale updated to version 0.5.23 with previous version 0.5.22 dated 2025-07-27

Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool [aut, cre]
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between OSMscale versions 0.5.22 dated 2025-07-27 and 0.5.23 dated 2025-09-30

 DESCRIPTION          |   10 +++++-----
 MD5                  |   18 +++++++++---------
 R/mapComp.R          |   13 ++++++++-----
 R/pointsMap.R        |    7 +++++--
 R/projectPoints.R    |    2 ++
 R/scaleBar.R         |   11 +++++++++--
 man/mapComp.Rd       |    5 +++--
 man/pointsMap.Rd     |    2 ++
 man/projectPoints.Rd |    2 ++
 man/scaleBar.Rd      |   11 +++++++++--
 10 files changed, 54 insertions(+), 27 deletions(-)

More information about OSMscale at CRAN
Permanent link

New package houba with initial version 0.1.0
Package: houba
Title: Manipulation of (Large) Memory-Mapped Objects (Vectors, Matrices and Arrays)
Version: 0.1.0
Date: 2025-09-17
Maintainer: Herve Perdry <herve.perdry@universite-paris-saclay.fr>
Description: Manipulate data through memory-mapped files, as vectors, matrices or arrays. Basic arithmetic functions are implemented, but currently no matrix arithmetic. Can write and read descriptor files for compatibility with the 'bigmemory' package.
License: CeCILL-2
Encoding: UTF-8
Depends: methods
Imports: Rcpp (>= 1.0.11)
Suggests: knitr, bigmemory
VignetteBuilder: knitr
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2025-09-23 12:44:45 UTC; rv
Author: Herve Perdry [aut, cre], Juliette Meyniel [aut]
Repository: CRAN
Date/Publication: 2025-09-30 08:30:20 UTC

More information about houba at CRAN
Permanent link

Package GABB updated to version 0.3.10 with previous version 0.3.9 dated 2025-05-14

Title: Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses
Description: Help to the occasional R user for synthesis and enhanced graphical visualization of redundancy analysis (RDA) and principal component analysis (PCA) methods and objects. Inputs are : data frame, RDA (package 'vegan') and PCA (package 'FactoMineR') objects. Outputs are : synthesized results of RDA, displayed in console and saved in tables ; displayed and saved objects of PCA graphic visualization of individuals and variables projections with multiple graphic parameters.
Author: Gregoire Bianchetti [aut, cre]
Maintainer: Gregoire Bianchetti <auguste.blam@gmail.com>

Diff between GABB versions 0.3.9 dated 2025-05-14 and 0.3.10 dated 2025-09-30

 DESCRIPTION          |    8 ++++----
 MD5                  |    4 ++--
 R/PCA_RDA_graphics.R |   13 ++++++++++---
 3 files changed, 16 insertions(+), 9 deletions(-)

More information about GABB at CRAN
Permanent link

New package blox with initial version 0.0.1
Package: blox
Title: Block Diagonal Matrix Approximation
Version: 0.0.1
Maintainer: Jan O. Bauer <j.bauer@vu.nl>
Description: Finds the best block diagonal matrix approximation of a symmetric matrix. This can be exploited for divisive hierarchical clustering using singular vectors, named HC-SVD. The method is described in Bauer (202Xa) <doi:10.48550/arXiv.2308.06820>.
License: GPL (>= 2)
Imports: matrixStats, Rcpp, RcppArmadillo
Encoding: UTF-8
Suggests: corrplot, knitr, psych, testthat (>= 3.0.0)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2025-09-24 09:00:39 UTC; jan
Author: Jan O. Bauer [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-30 09:00:13 UTC

More information about blox at CRAN
Permanent link

New package ZIDW with initial version 0.1.0
Package: ZIDW
Version: 0.1.0
Date: 2025-09-22
Title: Zero-Inflated Discrete Weibull Models
Depends: R (>= 4.1.0)
Imports: DWreg, actuar, maxLik, COUNT, gtools, matrixcalc, DiscreteWeibull, dplyr, ggplot2, purrr, tibble
URL: https://github.com/dsy109/ZIDW
Description: Parameter estimation for zero-inflated discrete Weibull (ZIDW) regression models, the univariate setting, distribution functions, functions to generate randomized quantile residuals a pseudo R2, and plotting of rootograms. For more details, see Kalktawi (2017) <https://bura.brunel.ac.uk/handle/2438/14476>, Taconeli and Rodrigues de Lara (2022) <doi:10.1080/00949655.2021.2005597>, and Yeh and Young (2025) <doi:10.1080/03610918.2025.2464076>.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2025-09-22 16:02:02 UTC; derekyoung
Author: Peng Yeh [aut], Derek S. Young [aut, cre]
Maintainer: Derek S. Young <derek.young@uky.edu>
Repository: CRAN
Date/Publication: 2025-09-30 07:20:22 UTC

More information about ZIDW at CRAN
Permanent link

Package rstanarm updated to version 2.32.2 with previous version 2.32.1 dated 2024-01-18

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Imad Ali [ctb], Sam Brilleman [ctb], Jacqueline Buros Novik [ctb] , AstraZeneca [ctb] , Trustees of Columbia University [cph], Simon Wood [cph] , R Core Deveopment Team [cph] , Douglas Bates [cph] , Martin Maechler [cph] , Ben Bolk [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between rstanarm versions 2.32.1 dated 2024-01-18 and 2.32.2 dated 2025-09-30

 rstanarm-2.32.1/rstanarm/cleanup                              |only
 rstanarm-2.32.1/rstanarm/cleanup.win                          |only
 rstanarm-2.32.1/rstanarm/inst/include/meta_header.hpp         |only
 rstanarm-2.32.1/rstanarm/src/Makevars.win                     |only
 rstanarm-2.32.1/rstanarm/src/rstanarm-win.def                 |only
 rstanarm-2.32.1/rstanarm/src/stan_files                       |only
 rstanarm-2.32.1/rstanarm/tests/testthat/include               |only
 rstanarm-2.32.1/rstanarm/tests/testthat/stan_files            |only
 rstanarm-2.32.1/rstanarm/tools                                |only
 rstanarm-2.32.2/rstanarm/DESCRIPTION                          |   13 
 rstanarm-2.32.2/rstanarm/MD5                                  |  375 -
 rstanarm-2.32.2/rstanarm/NAMESPACE                            |    3 
 rstanarm-2.32.2/rstanarm/R/bayes_R2.R                         |    4 
 rstanarm-2.32.2/rstanarm/R/doc-datasets.R                     |    2 
 rstanarm-2.32.2/rstanarm/R/doc-rstanarm-package.R             |    9 
 rstanarm-2.32.2/rstanarm/R/jm_data_block.R                    |   20 
 rstanarm-2.32.2/rstanarm/R/jm_make_assoc_parts.R              |    8 
 rstanarm-2.32.2/rstanarm/R/jm_make_assoc_terms.R              |    3 
 rstanarm-2.32.2/rstanarm/R/launch_shinystan.R                 |    2 
 rstanarm-2.32.2/rstanarm/R/log_lik.R                          |    6 
 rstanarm-2.32.2/rstanarm/R/loo-prediction.R                   |    1 
 rstanarm-2.32.2/rstanarm/R/loo.R                              |   56 
 rstanarm-2.32.2/rstanarm/R/misc.R                             |   14 
 rstanarm-2.32.2/rstanarm/R/plots.R                            |    2 
 rstanarm-2.32.2/rstanarm/R/pp_check.R                         |    6 
 rstanarm-2.32.2/rstanarm/R/pp_data.R                          |    6 
 rstanarm-2.32.2/rstanarm/R/predictive_error.R                 |    1 
 rstanarm-2.32.2/rstanarm/R/stan_biglm.R                       |    2 
 rstanarm-2.32.2/rstanarm/R/stan_clogit.R                      |    2 
 rstanarm-2.32.2/rstanarm/R/stan_glm.fit.R                     |    6 
 rstanarm-2.32.2/rstanarm/R/stanmodels.R                       |   63 
 rstanarm-2.32.2/rstanarm/R/stanmvreg-methods.R                |    4 
 rstanarm-2.32.2/rstanarm/R/stanreg-methods.R                  |    6 
 rstanarm-2.32.2/rstanarm/R/stanreg-objects.R                  |    2 
 rstanarm-2.32.2/rstanarm/R/stanreg_list.R                     |    3 
 rstanarm-2.32.2/rstanarm/R/zzz.R                              |   11 
 rstanarm-2.32.2/rstanarm/build/partial.rdb                    |binary
 rstanarm-2.32.2/rstanarm/build/vignette.rds                   |binary
 rstanarm-2.32.2/rstanarm/configure                            |only
 rstanarm-2.32.2/rstanarm/configure.win                        |only
 rstanarm-2.32.2/rstanarm/inst/doc/ab-testing.Rmd              |    2 
 rstanarm-2.32.2/rstanarm/inst/doc/ab-testing.html             | 1059 +++--
 rstanarm-2.32.2/rstanarm/inst/doc/aov.R                       |   16 
 rstanarm-2.32.2/rstanarm/inst/doc/aov.html                    |  227 -
 rstanarm-2.32.2/rstanarm/inst/doc/betareg.R                   |   10 
 rstanarm-2.32.2/rstanarm/inst/doc/betareg.html                |  350 +
 rstanarm-2.32.2/rstanarm/inst/doc/binomial.R                  |   22 
 rstanarm-2.32.2/rstanarm/inst/doc/binomial.Rmd                |    2 
 rstanarm-2.32.2/rstanarm/inst/doc/binomial.html               |  522 +-
 rstanarm-2.32.2/rstanarm/inst/doc/continuous.R                |   72 
 rstanarm-2.32.2/rstanarm/inst/doc/continuous.Rmd              |   10 
 rstanarm-2.32.2/rstanarm/inst/doc/continuous.html             |  551 +-
 rstanarm-2.32.2/rstanarm/inst/doc/count.R                     |   22 
 rstanarm-2.32.2/rstanarm/inst/doc/count.Rmd                   |    6 
 rstanarm-2.32.2/rstanarm/inst/doc/count.html                  |  346 +
 rstanarm-2.32.2/rstanarm/inst/doc/glmer.R                     |   26 
 rstanarm-2.32.2/rstanarm/inst/doc/glmer.html                  |  534 ++
 rstanarm-2.32.2/rstanarm/inst/doc/jm.R                        |   20 
 rstanarm-2.32.2/rstanarm/inst/doc/jm.html                     | 1918 +++++++---
 rstanarm-2.32.2/rstanarm/inst/doc/lm.R                        |    6 
 rstanarm-2.32.2/rstanarm/inst/doc/lm.html                     |  482 +-
 rstanarm-2.32.2/rstanarm/inst/doc/mrp.R                       |  274 -
 rstanarm-2.32.2/rstanarm/inst/doc/mrp.html                    |  965 +++--
 rstanarm-2.32.2/rstanarm/inst/doc/polr.R                      |    8 
 rstanarm-2.32.2/rstanarm/inst/doc/polr.html                   |  327 +
 rstanarm-2.32.2/rstanarm/inst/doc/pooling.R                   |   62 
 rstanarm-2.32.2/rstanarm/inst/doc/pooling.Rmd                 |   10 
 rstanarm-2.32.2/rstanarm/inst/doc/pooling.html                | 1628 +++++---
 rstanarm-2.32.2/rstanarm/inst/doc/priors.R                    |   30 
 rstanarm-2.32.2/rstanarm/inst/doc/priors.html                 |  440 +-
 rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.R                  |   24 
 rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.Rmd                |   26 
 rstanarm-2.32.2/rstanarm/inst/doc/rstanarm.html               |  653 ++-
 rstanarm-2.32.2/rstanarm/inst/include/stan_meta_header.hpp    |only
 rstanarm-2.32.2/rstanarm/inst/stan                            |only
 rstanarm-2.32.2/rstanarm/man/bayes_R2.stanreg.Rd              |    4 
 rstanarm-2.32.2/rstanarm/man/launch_shinystan.stanreg.Rd      |    2 
 rstanarm-2.32.2/rstanarm/man/loo.stanreg.Rd                   |   29 
 rstanarm-2.32.2/rstanarm/man/loo_predict.stanreg.Rd           |    2 
 rstanarm-2.32.2/rstanarm/man/plot.stanreg.Rd                  |    2 
 rstanarm-2.32.2/rstanarm/man/pp_check.stanreg.Rd              |    4 
 rstanarm-2.32.2/rstanarm/man/rstanarm-package.Rd              |   29 
 rstanarm-2.32.2/rstanarm/man/stan_betareg.Rd                  |    2 
 rstanarm-2.32.2/rstanarm/man/stan_biglm.Rd                    |    2 
 rstanarm-2.32.2/rstanarm/man/stan_glm.Rd                      |    2 
 rstanarm-2.32.2/rstanarm/man/stan_lm.Rd                       |    2 
 rstanarm-2.32.2/rstanarm/man/stan_polr.Rd                     |    2 
 rstanarm-2.32.2/rstanarm/man/stanreg-objects.Rd               |    2 
 rstanarm-2.32.2/rstanarm/src/Makevars                         |   22 
 rstanarm-2.32.2/rstanarm/src/stanExports_bernoulli.cc         |only
 rstanarm-2.32.2/rstanarm/src/stanExports_bernoulli.h          |only
 rstanarm-2.32.2/rstanarm/src/stanExports_binomial.cc          |only
 rstanarm-2.32.2/rstanarm/src/stanExports_binomial.h           |only
 rstanarm-2.32.2/rstanarm/src/stanExports_continuous.cc        |only
 rstanarm-2.32.2/rstanarm/src/stanExports_continuous.h         |only
 rstanarm-2.32.2/rstanarm/src/stanExports_count.cc             |only
 rstanarm-2.32.2/rstanarm/src/stanExports_count.h              |only
 rstanarm-2.32.2/rstanarm/src/stanExports_jm.cc                |only
 rstanarm-2.32.2/rstanarm/src/stanExports_jm.h                 |only
 rstanarm-2.32.2/rstanarm/src/stanExports_lm.cc                |only
 rstanarm-2.32.2/rstanarm/src/stanExports_lm.h                 |only
 rstanarm-2.32.2/rstanarm/src/stanExports_mvmer.cc             |only
 rstanarm-2.32.2/rstanarm/src/stanExports_mvmer.h              |only
 rstanarm-2.32.2/rstanarm/src/stanExports_polr.cc              |only
 rstanarm-2.32.2/rstanarm/src/stanExports_polr.h               |only
 rstanarm-2.32.2/rstanarm/tests/testthat/test_loo.R            |    2 
 rstanarm-2.32.2/rstanarm/tests/testthat/test_methods.R        |    3 
 rstanarm-2.32.2/rstanarm/tests/testthat/test_stan_clogit.R    |    7 
 rstanarm-2.32.2/rstanarm/tests/testthat/test_stan_functions.R |    4 
 rstanarm-2.32.2/rstanarm/vignettes/ab-testing.Rmd             |    2 
 rstanarm-2.32.2/rstanarm/vignettes/binomial.Rmd               |    2 
 rstanarm-2.32.2/rstanarm/vignettes/continuous.Rmd             |   10 
 rstanarm-2.32.2/rstanarm/vignettes/count.Rmd                  |    6 
 rstanarm-2.32.2/rstanarm/vignettes/pooling.Rmd                |   10 
 rstanarm-2.32.2/rstanarm/vignettes/rstanarm.Rmd               |   26 
 115 files changed, 7798 insertions(+), 3660 deletions(-)

More information about rstanarm at CRAN
Permanent link

New package rcldf with initial version 1.5.1
Package: rcldf
Title: Read Linguistic Data in the Cross Linguistic Data Format (CLDF)
Version: 1.5.1
Maintainer: Simon J. Greenhill <simon@simon.net.nz>
Description: Cross-Linguistic Data Format (CLDF) is a framework for storing cross-linguistic data, ensuring compatibility and ease of data exchange between different linguistic datasets see Forkel et al. (2018) <doi:10.1038/sdata.2018.205>. The 'rcldf' package is designed to facilitate the manipulation and analysis of these datasets by simplifying the loading, querying, and visualisation of CLDF datasets making it easier to conduct comparative linguistic analyses, manage language data, and apply statistical methods directly within R.
License: Apache License (>= 2.0)
Encoding: UTF-8
Imports: archive, bib2df (>= 1.1.1), csvwr, digest, dplyr, jsonlite, logger, magrittr, purrr, readr, remotes, rlang, tools, urltools, utils
Suggests: ggplot2, patchwork, testthat, mockthat, spelling, covr, knitr, rmarkdown, qpdf
URL: https://github.com/SimonGreenhill/rcldf
BugReports: https://github.com/SimonGreenhill/rcldf/issues
Language: en-US
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-22 08:05:55 UTC; simon
Author: Simon J. Greenhill [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-30 07:20:02 UTC

More information about rcldf at CRAN
Permanent link

New package radviz3d with initial version 2.3.0
Package: radviz3d
Title: 3D Radial Visualization
Version: 2.3.0
Description: Creating 3D radial visualizations of multivariate data. The package extends traditional radial coordinate visualization (RadViz) techniques to three-dimensional space, enabling enhanced exploration and analysis of high-dimensional datasets through interactive 3D plots. Zhu, Dai & Maitra (2022) <doi:10.1080/10618600.2021.2020129>.
Depends: R (>= 3.5.0)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Imports: rgl (>= 0.100.19)
Suggests: MixSim, gtools
Author: Yifan Zhu [cre, aut], Fan Dai [aut], Ranjan Maitra [aut], Niraj Kunwar [aut], Gani Agadilov [aut]
Maintainer: Yifan Zhu <yifanzhu@iastate.edu>
NeedsCompilation: no
Packaged: 2025-09-23 07:12:54 UTC; yifanzhu
Repository: CRAN
Date/Publication: 2025-09-30 07:50:02 UTC

More information about radviz3d at CRAN
Permanent link

New package OmopConstructor with initial version 0.1.0
Package: OmopConstructor
Title: Build Tables in the OMOP Common Data Model
Version: 0.1.0
Description: Provides functionality to construct standardised tables from health care data formatted according to the Observational Medical Outcomes Partnership (OMOP) Common Data Model. The package includes tools to build key tables such as observation period and drug era, among others.
License: Apache License (>= 2)
Encoding: UTF-8
Imports: cli, clock, dplyr, glue, omopgenerics, PatientProfiles, purrr, rlang, tidyr
Depends: R (>= 4.1)
Suggests: bookdown, CDMConnector, duckdb, ggplot2, gt, knitr, odbc, omock, OmopSketch, rmarkdown, RPostgres, stringr, testthat (>= 3.0.0), visOmopResults
URL: https://ohdsi.github.io/OmopConstructor/
BugReports: https://github.com/ohdsi/OmopConstructor/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-22 19:23:49 UTC; martics
Author: Marti Catala [aut, cre] , Elin Rowlands [ctb] , Cecilia Campanile [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Repository: CRAN
Date/Publication: 2025-09-30 07:20:28 UTC

More information about OmopConstructor at CRAN
Permanent link

New package nonParQuantileCausality with initial version 0.1.0
Package: nonParQuantileCausality
Title: Nonparametric Causality in Quantiles Test
Version: 0.1.0
Author: Mehmet Balcilar [aut, cre]
Maintainer: Mehmet Balcilar <mehmet@mbalcilar.net>
Description: Implements the nonparametric causality-in-quantiles test (in mean or variance), returning a test object with an S3 plot() method. The current implementation uses one lag of each series (first-order Granger causality setup). Methodology is based on Balcilar, Gupta, and Pierdzioch (2016a) <doi:10.1016/j.resourpol.2016.04.004> and Balcilar et al. (2016) <doi:10.1007/s11079-016-9388-x>.
License: MIT + file LICENSE
URL: https://www.mbalcilar.net, https://github.com/mbalcilar/nonParQuantileCausality
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
Depends: R (>= 3.6)
Imports: stats, ggplot2, quantreg, KernSmooth
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-22 20:25:08 UTC; mbalcilar
Repository: CRAN
Date/Publication: 2025-09-30 07:20:08 UTC

More information about nonParQuantileCausality at CRAN
Permanent link

New package myownrobs with initial version 0.1.0
Package: myownrobs
Title: AI Coding Agent for 'RStudio'
Version: 0.1.0
Maintainer: Juan Cruz Rodriguez <jcrodriguez@unc.edu.ar>
Description: Provides an 'RStudio' extension with a chat interface for an AI coding agent to help users with R programming tasks.
License: MIT + file LICENSE
URL: https://myownrobs.github.io/myownrobs/, https://github.com/MyOwnRobs/myownrobs
BugReports: https://github.com/MyOwnRobs/myownrobs/issues
Encoding: UTF-8
Imports: fs, gargle, glue, httr2, jsonlite, mirai, rstudio.prefs, rstudioapi, shiny, tools, uuid, yaml
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2025-09-22 23:25:27 UTC; jcrodriguez
Author: Juan Cruz Rodriguez [aut, cre]
Repository: CRAN
Date/Publication: 2025-09-30 07:30:02 UTC

More information about myownrobs at CRAN
Permanent link

New package mammalcol with initial version 0.2.9
Package: mammalcol
Title: Access to the List of Mammal Species of Colombia
Version: 0.2.9
Date: 2025-09-22
Maintainer: Diego J. Lizcano <dj.lizcano@gmail.com>
Description: The goal of 'mammalcol' is to provide easy access to a meticulously structured dataset of Colombian mammal species in R. The 2025 update includes comprehensive, detailed species accounts, and distribution information.
License: MIT + file LICENSE
URL: https://github.com/dlizcano/mammalcol, https://dlizcano.github.io/mammalcol/
BugReports: https://github.com/dlizcano/mammalcol/issues
Depends: R (>= 3.5.0)
Imports: ggplot2, magrittr, sf, geodata,
Suggests: dplyr, finch, knitr, readr, readxl, rmarkdown, stringr, testthat (>= 3.0.0)
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-22 16:51:35 UTC; usuario
Author: Diego J. Lizcano [aut, cre] , Cristian A. Cruz-Rodriguez [ctb, aut] , Andres F. Suarez-Castro [ctb, aut] , Baltazar Gonzalez [ctb, aut] , Alejandra Bonilla-Sanchez [ctb] , Camilo A. Calderon-Acevedo [ctb]
Repository: CRAN
Date/Publication: 2025-09-30 07:20:13 UTC

More information about mammalcol at CRAN
Permanent link

New package foodwebr with initial version 1.0.0
Package: foodwebr
Title: Visualise Function Dependencies
Version: 1.0.0
Description: Easily create graphs of the inter-relationships between functions in an environment.
License: MIT + file LICENSE
URL: https://lewinfox.com/foodwebr/
BugReports: https://github.com/lewinfox/foodwebr/issues
Imports: cli, crayon, codetools, DiagrammeR, glue, rlang, stringr, tidygraph
Suggests: testthat
Encoding: UTF-8
Language: en-GB
NeedsCompilation: no
Packaged: 2025-09-23 04:44:26 UTC; lewin
Author: Lewin Appleton-Fox [aut, cre]
Maintainer: Lewin Appleton-Fox <lewin.a.f@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 07:30:07 UTC

More information about foodwebr at CRAN
Permanent link

New package DyadRatios with initial version 1.2
Package: DyadRatios
Title: Dyad Ratios Algorithm
Version: 1.2
Date: 2025-09-22
Description: Estimates the Dyad Ratios Algorithm for pooling and smoothing poll estimates. The Dyad Ratios Algorithm smooths both forward and backward in time over polling results allowing differences in both question type and polling house. The result is an estimate of a single latent variable that describes the systematic trend over time in the (noisy) polling results. See James A. Stimson (2018) <doi:10.1177/0759106318761614> and the package's vignette for more details.
Depends: R (>= 3.5.0)
Imports: ggplot2, lubridate, stats
License: GPL (>= 2)
Encoding: UTF-8
Suggests: dplyr, rio, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-09-22 19:06:45 UTC; david
Author: Dave Armstrong [cre], James Stimson [aut]
Maintainer: Dave Armstrong <davearmstrong.ps@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-30 07:20:33 UTC

More information about DyadRatios at CRAN
Permanent link

New package docorator with initial version 0.5.0
Package: docorator
Title: Docorate (Decorate + Output) Displays
Version: 0.5.0
Description: A framework for creating production outputs. Users can frame a table, listing, or figure with headers and footers and save to an output file. Stores an intermediate 'docorator' object for reproducibility and rendering to multiple output types.
License: Apache License 2.0
Encoding: UTF-8
Imports: gt (>= 0.11.0), rmarkdown, rlang, cli, dplyr, rstudioapi, purrr, stringr, tidyr, lifecycle, png, knitr, withr, quarto
Suggests: rprojroot, testthat (>= 3.0.0), tfrmt, pdftools, ggplot2
VignetteBuilder: knitr
URL: https://GSK-Biostatistics.github.io/docorator/, https://github.com/GSK-Biostatistics/docorator
BugReports: https://github.com/GSK-Biostatistics/docorator/issues
Depends: R (>= 4.1.0)
NeedsCompilation: no
Packaged: 2025-09-22 15:38:15 UTC; bkrouse
Author: Becca Krouse [aut, cre], Shannon Haughton [aut], Seongbin Hong [aut], DragoČ™ Moldovan-Gruenfeld [aut], GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Repository: CRAN
Date/Publication: 2025-09-30 07:10:02 UTC

More information about docorator at CRAN
Permanent link

New package coglyphr with initial version 1.0.4
Package: coglyphr
Title: Compute Glyph Centers of Gravity from Image Data
Version: 1.0.4
Description: Computes the center of gravity (COG) of character-like binary images using three different methods. This package provides functions for estimating stroke-based, contour-based, and potential energy-based COG. It is useful for analyzing glyph structure in areas such as visual cognition research and font development. The contour-based method was originally proposed by Kotani et al. (2004) <https://ipsj.ixsq.nii.ac.jp/records/36793> and Kotani (2011) <https://shonan-it.repo.nii.ac.jp/records/2000243>, while the potential energy-based method was introduced by Kotani et al. (2006) <doi:10.11371/iieej.35.296>.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/mutopsy/coglyphr, https://mutopsy.github.io/coglyphr/
BugReports: https://github.com/mutopsy/coglyphr/issues
Depends: R (>= 4.4.0)
Imports: imager, dplyr, sp
LazyData: true
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2025-09-23 08:57:31 UTC; owner
Author: Hiroyuki Muto [aut, cre]
Maintainer: Hiroyuki Muto <mutopsy@omu.ac.jp>
Repository: CRAN
Date/Publication: 2025-09-30 08:00:11 UTC

More information about coglyphr at CRAN
Permanent link

New package captain with initial version 1.1.1
Package: captain
Title: Running 'git' Pre-Commit Hooks
Version: 1.1.1
Description: Git hook scripts are useful for identifying simple issues before submission to code review. 'captain' (hook) is an R package to manage and run git pre-commit hooks.
License: MIT + file LICENSE
URL: https://github.com/alexym1/captain, https://alexym1.github.io/captain/
BugReports: https://github.com/alexym1/captain/issues
Depends: R (>= 4.1.0)
Imports: cli, fs, yaml
Suggests: devtools, covr, knitr, styler, testthat, withr
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2025-09-22 20:22:11 UTC; Admin
Author: Alex Yahiaoui Martinez [aut, cre]
Maintainer: Alex Yahiaoui Martinez <yahiaoui-martinez.alex@outlook.com>
Repository: CRAN
Date/Publication: 2025-09-30 07:20:18 UTC

More information about captain at CRAN
Permanent link

Package pdSpecEst updated to version 1.2.6 with previous version 1.2.4 dated 2020-01-08

Title: An Analysis Toolbox for Hermitian Positive Definite Matrices
Description: An implementation of data analysis tools for samples of symmetric or Hermitian positive definite matrices, such as collections of covariance matrices or spectral density matrices. The tools in this package can be used to perform: (i) intrinsic wavelet transforms for curves (1D) or surfaces (2D) of Hermitian positive definite matrices with applications to dimension reduction, denoising and clustering in the space of Hermitian positive definite matrices; and (ii) exploratory data analysis and inference for samples of positive definite matrices by means of intrinsic data depth functions and rank-based hypothesis tests in the space of Hermitian positive definite matrices.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <joris.chau@openanalytics.eu>

Diff between pdSpecEst versions 1.2.4 dated 2020-01-08 and 1.2.6 dated 2025-09-30

 pdSpecEst-1.2.4/pdSpecEst/R/pdSpecEst.R                   |only
 pdSpecEst-1.2.4/pdSpecEst/README.md                       |only
 pdSpecEst-1.2.4/pdSpecEst/man/pdSpecEst.Rd                |only
 pdSpecEst-1.2.6/pdSpecEst/DESCRIPTION                     |   10 
 pdSpecEst-1.2.6/pdSpecEst/MD5                             |   63 
 pdSpecEst-1.2.6/pdSpecEst/NEWS.md                         |    8 
 pdSpecEst-1.2.6/pdSpecEst/R/cluster.R                     |    2 
 pdSpecEst-1.2.6/pdSpecEst/R/pdSpecEst-package.R           |only
 pdSpecEst-1.2.6/pdSpecEst/build/partial.rdb               |binary
 pdSpecEst-1.2.6/pdSpecEst/build/vignette.rds              |binary
 pdSpecEst-1.2.6/pdSpecEst/inst/doc/depth_ranktests.R      |   20 
 pdSpecEst-1.2.6/pdSpecEst/inst/doc/depth_ranktests.html   |  788 +++++++-----
 pdSpecEst-1.2.6/pdSpecEst/inst/doc/wavelet_est_clust.R    |   34 
 pdSpecEst-1.2.6/pdSpecEst/inst/doc/wavelet_est_clust.Rmd  |   26 
 pdSpecEst-1.2.6/pdSpecEst/inst/doc/wavelet_est_clust.html |  919 ++++++++++----
 pdSpecEst-1.2.6/pdSpecEst/man/InvWavTransf1D.Rd           |   11 
 pdSpecEst-1.2.6/pdSpecEst/man/InvWavTransf2D.Rd           |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/WavTransf1D.Rd              |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/pdMean.Rd                   |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/pdPgram.Rd                  |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/pdPgram2D.Rd                |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/pdRankTests.Rd              |   10 
 pdSpecEst-1.2.6/pdSpecEst/man/pdSpecClust1D.Rd            |   16 
 pdSpecEst-1.2.6/pdSpecEst/man/pdSpecClust2D.Rd            |   16 
 pdSpecEst-1.2.6/pdSpecEst/man/pdSpecEst-package.Rd        |only
 pdSpecEst-1.2.6/pdSpecEst/man/pdSpecEst1D.Rd              |   10 
 pdSpecEst-1.2.6/pdSpecEst/man/pdSpecEst2D.Rd              |   10 
 pdSpecEst-1.2.6/pdSpecEst/man/pdSplineReg.Rd              |    3 
 pdSpecEst-1.2.6/pdSpecEst/man/pdkMeans.Rd                 |   13 
 pdSpecEst-1.2.6/pdSpecEst/man/rExamples1D.Rd              |   17 
 pdSpecEst-1.2.6/pdSpecEst/man/rExamples2D.Rd              |   12 
 pdSpecEst-1.2.6/pdSpecEst/src/Makevars                    |   11 
 pdSpecEst-1.2.6/pdSpecEst/src/Makevars.win                |   11 
 pdSpecEst-1.2.6/pdSpecEst/src/RcppExports.cpp             |    5 
 pdSpecEst-1.2.6/pdSpecEst/vignettes/wavelet_est_clust.Rmd |   26 
 35 files changed, 1395 insertions(+), 661 deletions(-)

More information about pdSpecEst at CRAN
Permanent link

Package spatialEco updated to version 2.0-3 with previous version 2.0-2 dated 2023-11-17

Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling and modelling in ecological applications. Functions include models for species population density, spatial smoothing, multivariate separability, point process model for creating pseudo- absences and sub-sampling, Quadrant-based sampling and analysis, auto-logistic modeling, sampling models, cluster optimization, statistical exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre] , Melanie A. Murphy [ctb], Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>

Diff between spatialEco versions 2.0-2 dated 2023-11-17 and 2.0-3 dated 2025-09-30

 spatialEco-2.0-2/spatialEco/man/oli.asw.Rd                |only
 spatialEco-2.0-3/spatialEco/DESCRIPTION                   |   13 -
 spatialEco-2.0-3/spatialEco/MD5                           |   40 +--
 spatialEco-2.0-3/spatialEco/NAMESPACE                     |    3 
 spatialEco-2.0-3/spatialEco/R/aspline.downscale.R         |   13 -
 spatialEco-2.0-3/spatialEco/R/cgls_urls.R                 |  153 +-----------
 spatialEco-2.0-3/spatialEco/R/crossCorrelation.R          |    2 
 spatialEco-2.0-3/spatialEco/R/dahi.R                      |    9 
 spatialEco-2.0-3/spatialEco/R/elev-data.R                 |    2 
 spatialEco-2.0-3/spatialEco/R/oli.aws.R                   |  105 --------
 spatialEco-2.0-3/spatialEco/R/raster.gaussian.smooth.R    |   69 +++--
 spatialEco-2.0-3/spatialEco/R/raster.kendall.R            |    2 
 spatialEco-2.0-3/spatialEco/R/sf.kde.R                    |  170 +++++---------
 spatialEco-2.0-3/spatialEco/R/z_normalization.R           |only
 spatialEco-2.0-3/spatialEco/inst/CITATION                 |    4 
 spatialEco-2.0-3/spatialEco/inst/NEWS                     |   23 +
 spatialEco-2.0-3/spatialEco/man/cgls_urls.Rd              |   79 ------
 spatialEco-2.0-3/spatialEco/man/dahi.Rd                   |    5 
 spatialEco-2.0-3/spatialEco/man/elev.Rd                   |    2 
 spatialEco-2.0-3/spatialEco/man/oli.aws.Rd                |only
 spatialEco-2.0-3/spatialEco/man/raster.gaussian.smooth.Rd |    6 
 spatialEco-2.0-3/spatialEco/man/sf.kde.Rd                 |    9 
 spatialEco-2.0-3/spatialEco/man/z_normalization.Rd        |only
 23 files changed, 225 insertions(+), 484 deletions(-)

More information about spatialEco at CRAN
Permanent link

Package prolsirm updated to version 0.1.1 with previous version 0.1.0 dated 2023-09-20

Title: Procrustes Matching for Latent Space Item Response Model
Description: Procrustes matching of the posterior samples of person and item latent positions from latent space item response models. The methods implemented in this package are based on work by Borg, I., Groenen, P. (1997, ISBN:978-0-387-94845-4), Jeon, M., Jin, I. H., Schweinberger, M., Baugh, S. (2021) <doi:10.1007/s11336-021-09762-5>, and Andrew, D. M., Kevin M. Q., Jong Hee Park. (2011) <doi:10.18637/jss.v042.i09>.
Author: Jinwen Luo [aut, cre] , Minjeong Jeon [aut]
Maintainer: Jinwen Luo <jevanluo@ucla.edu>

Diff between prolsirm versions 0.1.0 dated 2023-09-20 and 0.1.1 dated 2025-09-30

 DESCRIPTION       |   10 +++++-----
 MD5               |    6 +++---
 R/procrustes.R    |    6 ++++--
 man/procrustes.Rd |   13 ++++++++-----
 4 files changed, 20 insertions(+), 15 deletions(-)

More information about prolsirm at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.