Title: Assemble 'SSN' Objects
Description: Import, create and assemble data needed to fit spatial-statistical stream-network models using the 'SSN2' package for 'R'. Streams, observations, and prediction locations are represented as simple features and specific tools provided to define topological relationships between features; calculate the hydrologic distances (with flow-direction preserved) and the spatial additive function used to weight converging stream segments; and export the topological, spatial, and attribute information to an `SSN` (spatial stream network) object, which can be efficiently stored, accessed and analysed in 'R'. A detailed description of methods used to calculate and format the spatial data can be found in Peterson, E.E. and Ver Hoef, J.M., (2014) <doi:10.18637/jss.v056.i02>.
Author: Erin Peterson [aut, cre] ,
Michael Dumelle [aut] ,
Alan Pearse [aut] ,
Dan Teleki [ctb],
Jay M. Ver Hoef [ctb]
Maintainer: Erin Peterson <erin@peterson-consulting.com>
Diff between SSNbler versions 1.1.0 dated 2025-03-25 and 1.1.1 dated 2025-10-06
SSNbler-1.1.0/SSNbler/R/lines_to_lsn_temp.R |only SSNbler-1.1.0/SSNbler/man/lines_to_lsn_temp.Rd |only SSNbler-1.1.0/SSNbler/tests/testthat/test-workflow.R |only SSNbler-1.1.1/SSNbler/DESCRIPTION | 15 + SSNbler-1.1.1/SSNbler/MD5 | 41 +++-- SSNbler-1.1.1/SSNbler/NAMESPACE | 1 SSNbler-1.1.1/SSNbler/NEWS.md | 11 + SSNbler-1.1.1/SSNbler/R/afv_edges.R | 4 SSNbler-1.1.1/SSNbler/R/get_pdist_nodes.R | 13 + SSNbler-1.1.1/SSNbler/R/lines_to_lsn.R | 83 +++++++---- SSNbler-1.1.1/SSNbler/R/pdist_node_coords.R | 18 +- SSNbler-1.1.1/SSNbler/README.md | 4 SSNbler-1.1.1/SSNbler/build/partial.rdb |binary SSNbler-1.1.1/SSNbler/build/vignette.rds |binary SSNbler-1.1.1/SSNbler/inst/CITATION | 4 SSNbler-1.1.1/SSNbler/inst/doc/introduction.html | 10 - SSNbler-1.1.1/SSNbler/man/lines_to_lsn.Rd | 8 - SSNbler-1.1.1/SSNbler/tests/testthat/helper.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-accum_edges.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-afv_edges.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-afv_sites.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-copy_lsn_to_temp.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-data.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-lines_to_lsn.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-sites_to_lsn.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-ssn_assemble.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-ssn_check.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-updist_edges.R |only SSNbler-1.1.1/SSNbler/tests/testthat/test-updist_sites.R |only 29 files changed, 136 insertions(+), 76 deletions(-)
Title: Animal Movement Modelling using Hidden Markov Models
Description: Provides tools for animal movement modelling using hidden Markov
models. These include processing of tracking data, fitting hidden Markov models
to movement data, visualization of data and fitted model, decoding of the state
process, etc. <doi:10.1111/2041-210X.12578>.
Author: Theo Michelot [aut, cre],
Roland Langrock [aut, ctb],
Toby Patterson [aut, ctb],
Brett McClintock [ctb],
Eric Rexstad [ctb]
Maintainer: Theo Michelot <theo.michelot@dal.ca>
Diff between moveHMM versions 1.11 dated 2025-06-23 and 1.12 dated 2025-10-06
DESCRIPTION | 10 +- MD5 | 24 ++--- NEWS.md | 8 + R/prepData.R | 11 +- inst/doc/moveHMM-custom-plots.pdf |binary inst/doc/moveHMM-example.pdf |binary inst/doc/moveHMM-guide.R | 162 +++++++++++++++++------------------ inst/doc/moveHMM-guide.pdf |binary inst/doc/moveHMM-starting-values.R | 94 ++++++++++---------- inst/doc/moveHMM-starting-values.pdf |binary man/prepData.Rd | 5 - src/densities.h | 12 +- src/nLogLike.cpp | 2 13 files changed, 168 insertions(+), 160 deletions(-)
Title: Use Data from the Czech Public Finance Database
Description: Get programmatic access to data from the Czech public
budgeting and accounting database, Státní pokladna
<https://monitor.statnipokladna.gov.cz/>.
Author: Petr Bouchal [aut, cre]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between statnipokladna versions 0.7.4 dated 2024-08-21 and 0.7.7 dated 2025-10-06
statnipokladna-0.7.4/statnipokladna/man/add_codelist.Rd |only statnipokladna-0.7.4/statnipokladna/man/get_codelist.Rd |only statnipokladna-0.7.4/statnipokladna/man/get_dataset.Rd |only statnipokladna-0.7.4/statnipokladna/man/get_dataset_doc.Rd |only statnipokladna-0.7.4/statnipokladna/man/get_table.Rd |only statnipokladna-0.7.7/statnipokladna/DESCRIPTION | 15 +- statnipokladna-0.7.7/statnipokladna/MD5 | 63 ++++------ statnipokladna-0.7.7/statnipokladna/NAMESPACE | 5 statnipokladna-0.7.7/statnipokladna/NEWS.md | 18 ++ statnipokladna-0.7.7/statnipokladna/R/codelists.R | 47 ------- statnipokladna-0.7.7/statnipokladna/R/datasets.R | 41 ------ statnipokladna-0.7.7/statnipokladna/R/shared.R | 2 statnipokladna-0.7.7/statnipokladna/R/tables.R | 29 +--- statnipokladna-0.7.7/statnipokladna/R/utils.R | 6 statnipokladna-0.7.7/statnipokladna/README.md | 8 - statnipokladna-0.7.7/statnipokladna/build/vignette.rds |binary statnipokladna-0.7.7/statnipokladna/inst/doc/how-the-data-works-cz.Rmd | 14 +- statnipokladna-0.7.7/statnipokladna/inst/doc/how-the-data-works-cz.html | 17 +- statnipokladna-0.7.7/statnipokladna/inst/doc/statnipokladna.Rmd | 10 - statnipokladna-0.7.7/statnipokladna/inst/doc/statnipokladna.html | 14 +- statnipokladna-0.7.7/statnipokladna/inst/doc/workflow.Rmd | 2 statnipokladna-0.7.7/statnipokladna/inst/doc/workflow.html | 11 - statnipokladna-0.7.7/statnipokladna/man/sp_add_codelist.Rd | 2 statnipokladna-0.7.7/statnipokladna/man/sp_codelists.Rd | 4 statnipokladna-0.7.7/statnipokladna/man/sp_datasets.Rd | 2 statnipokladna-0.7.7/statnipokladna/man/sp_get_codelist.Rd | 2 statnipokladna-0.7.7/statnipokladna/man/sp_get_codelist_viewer.Rd | 2 statnipokladna-0.7.7/statnipokladna/man/sp_get_dataset.Rd | 2 statnipokladna-0.7.7/statnipokladna/man/sp_get_table.Rd | 4 statnipokladna-0.7.7/statnipokladna/man/sp_tables.Rd | 2 statnipokladna-0.7.7/statnipokladna/tests/testthat/test-datasets.R | 1 statnipokladna-0.7.7/statnipokladna/tests/testthat/test-tables.R | 1 statnipokladna-0.7.7/statnipokladna/vignettes/how-the-data-works-cz.Rmd | 14 +- statnipokladna-0.7.7/statnipokladna/vignettes/statnipokladna.Rmd | 10 - statnipokladna-0.7.7/statnipokladna/vignettes/workflow.Rmd | 2 35 files changed, 131 insertions(+), 219 deletions(-)
More information about statnipokladna at CRAN
Permanent link
Title: Shrinkage Covariance Matrix Estimators
Description: Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis [aut, cre]
Maintainer: Anestis Touloumis <A.Touloumis@brighton.ac.uk>
Diff between ShrinkCovMat versions 1.4.0 dated 2019-07-30 and 2.1.0 dated 2025-10-06
ShrinkCovMat-1.4.0/ShrinkCovMat/inst/NEWS |only ShrinkCovMat-1.4.0/ShrinkCovMat/man/shrinkcovmat.equal.Rd |only ShrinkCovMat-1.4.0/ShrinkCovMat/man/shrinkcovmat.identity.Rd |only ShrinkCovMat-1.4.0/ShrinkCovMat/man/shrinkcovmat.unequal.Rd |only ShrinkCovMat-1.4.0/ShrinkCovMat/src/Makevars.win |only ShrinkCovMat-1.4.0/ShrinkCovMat/tests/testthat/test_shrinkage_equal.R |only ShrinkCovMat-1.4.0/ShrinkCovMat/tests/testthat/test_shrinkage_unequal.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/DESCRIPTION | 28 ++- ShrinkCovMat-2.1.0/ShrinkCovMat/MD5 | 64 ++++---- ShrinkCovMat-2.1.0/ShrinkCovMat/NAMESPACE | 1 ShrinkCovMat-2.1.0/ShrinkCovMat/R/ShrinkCovMat-deprecated.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/R/ShrinkCovMat-package.R | 29 ++- ShrinkCovMat-2.1.0/ShrinkCovMat/R/ShrinkCovMat_data.R | 12 - ShrinkCovMat-2.1.0/ShrinkCovMat/R/ShrinkCovMat_internals.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/R/print.targetsel.R | 8 - ShrinkCovMat-2.1.0/ShrinkCovMat/R/shrinkcovmat.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/R/shrinkcovmat.equal.R | 19 +- ShrinkCovMat-2.1.0/ShrinkCovMat/R/shrinkcovmat.identity.R | 21 +- ShrinkCovMat-2.1.0/ShrinkCovMat/R/shrinkcovmat.unequal.R | 22 +- ShrinkCovMat-2.1.0/ShrinkCovMat/R/targetsel.default.R | 8 - ShrinkCovMat-2.1.0/ShrinkCovMat/R/targetselection.R | 75 ++++------ ShrinkCovMat-2.1.0/ShrinkCovMat/build |only ShrinkCovMat-2.1.0/ShrinkCovMat/data/colon.rda |binary ShrinkCovMat-2.1.0/ShrinkCovMat/inst/CITATION | 21 -- ShrinkCovMat-2.1.0/ShrinkCovMat/inst/NEWS.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/inst/doc |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/ShrinkCovMat-deprecated.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/ShrinkCovMat-package.Rd | 33 ++-- ShrinkCovMat-2.1.0/ShrinkCovMat/man/colon.Rd | 13 + ShrinkCovMat-2.1.0/ShrinkCovMat/man/shrinkcovmat.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/shrinkcovmat.equal-deprecated.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/shrinkcovmat.identity-deprecated.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/shrinkcovmat.unequal-deprecated.Rd |only ShrinkCovMat-2.1.0/ShrinkCovMat/man/targetselection.Rd | 16 +- ShrinkCovMat-2.1.0/ShrinkCovMat/src/Makevars | 14 - ShrinkCovMat-2.1.0/ShrinkCovMat/src/RcppExports.cpp | 5 ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_internals.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_misc.R | 11 + ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_shrinkage_diagonal.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_shrinkage_identity.R | 26 +-- ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_shrinkage_spherical.R |only ShrinkCovMat-2.1.0/ShrinkCovMat/tests/testthat/test_targetselection.R | 28 +-- ShrinkCovMat-2.1.0/ShrinkCovMat/vignettes |only 43 files changed, 235 insertions(+), 219 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://csu.gov.cz>).
Author: Petr Bouchal [aut, cre] ,
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.4.3 dated 2025-09-09 and 0.4.4 dated 2025-10-06
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/catalogue.R | 2 ++ man/czso_filter_catalogue.Rd | 2 ++ tests/testthat/test-catalogue.R | 1 + tests/testthat/test-workflow-utilities.R | 2 ++ 7 files changed, 20 insertions(+), 9 deletions(-)
Title: Penalized Meta-Analysis
Description: Conduct penalized meta-analysis, see Van Lissa, Van Erp, & Clapper
(2023) <doi:10.31234/osf.io/6phs5>. In meta-analysis, there are
often between-study differences. These can be coded as moderator variables,
and controlled for using meta-regression. However, if the number of
moderators is large relative to the number of studies, such an analysis may
be overfit. Penalized meta-regression is useful in these cases, because
it shrinks the regression slopes of irrelevant moderators towards zero.
Author: Caspar J van Lissa [aut, cre] ,
Sara J van Erp [aut]
Maintainer: Caspar J van Lissa <c.j.vanlissa@tilburguniversity.edu>
This is a re-admission after prior archival of version 0.1.4 dated 2025-03-30
Diff between pema versions 0.1.4 dated 2025-03-30 and 0.1.5 dated 2025-10-06
DESCRIPTION | 9 MD5 | 21 R/brma.R | 932 +++++++++++++++++------------------ R/check_workshop_data.R | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/meta-analysis_tutorial.R | 500 +++++++++--------- inst/doc/meta-analysis_tutorial.Rmd | 294 +++++------ inst/doc/meta-analysis_tutorial.html | 924 ++++------------------------------ man/check_workshop_data.Rd | 4 vignettes/meta-analysis_tutorial.Rmd | 294 +++++------ vignettes/tutorial_funnel.png |only 12 files changed, 1182 insertions(+), 1803 deletions(-)
Title: Supervised Feature Selection
Description: Interfaces for choosing important predictors in supervised
regression, classification, and censored regression models. Permuted
importance scores (Biecek and Burzykowski (2021)
<doi:10.1201/9780429027192>) can be computed for 'tidymodels' model
fits.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between important versions 0.2.0 dated 2025-09-05 and 0.2.1 dated 2025-10-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++-- build/partial.rdb |binary inst/WORDLIST | 3 ++- man/important-package.Rd | 2 +- tests/testthat/test-plots.R | 30 ++++++++++-------------------- 7 files changed, 27 insertions(+), 34 deletions(-)
Title: German Election Database (GERDA)
Description: Provides tools to download comprehensive datasets of local,
state, and federal election results in Germany from 1990 to 2025. The package
facilitates access to data on turnout, vote shares for major parties, and
demographic information across different levels of government (municipal, state,
and federal). It offers access to geographically harmonized datasets
that account for changes in municipal boundaries over time and incorporate
mail-in voting districts. Users can easily retrieve, clean, and standardize
German electoral data, making it ready for analysis. Data is sourced from
<https://github.com/awiedem/german_election_data>.
Author: Hanno Hilbig [aut, cre]
Maintainer: Hanno Hilbig <hhilbig@ucdavis.edu>
Diff between gerda versions 0.2.0 dated 2025-08-19 and 0.2.1 dated 2025-10-06
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 11 +++++ R/load_gerda_web.R | 12 +++++ inst/doc/gerda.R | 22 +++++----- tests/testthat/test-load_gerda_web.R | 77 +++++++++++++++++++++++++++++++++++ 6 files changed, 119 insertions(+), 19 deletions(-)
Title: Fairness Evaluation Metrics with Confidence Intervals for Binary
Protected Attributes
Description: A collection of functions for computing fairness metrics for machine learning and statistical models, including confidence intervals for each metric. The package supports the evaluation of group-level fairness criterion commonly used in fairness research, particularly in healthcare for binary protected attributes. It is based on the overview of fairness in machine learning written by Gao et al (2024) <doi:10.48550/arXiv.2406.09307>.
Author: Jianhui Gao [aut] ,
Benjamin Smith [aut, cre] ,
Benson Chou [aut] ,
Jessica Gronsbell [aut]
Maintainer: Benjamin Smith <benyamin.smith@mail.utoronto.ca>
Diff between fairmetrics versions 1.0.6 dated 2025-09-11 and 1.0.7 dated 2025-10-06
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/CITATION | 38 +++++++++++++++++++++----------------- 3 files changed, 26 insertions(+), 22 deletions(-)
Title: Extracts the Backbone from Networks
Description: An implementation of methods for extracting a sparse unweighted network (i.e. a backbone)
from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network
(e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021
<doi:10.1038/s41598-021-03238-3>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 3.0.1 dated 2025-09-30 and 3.0.2 dated 2025-10-06
backbone-3.0.1/backbone/inst/doc/unit_tests.R |only backbone-3.0.1/backbone/inst/doc/unit_tests.Rmd |only backbone-3.0.1/backbone/inst/doc/unit_tests.html |only backbone-3.0.1/backbone/vignettes/unit_tests.Rmd |only backbone-3.0.2/backbone/DESCRIPTION | 6 +- backbone-3.0.2/backbone/MD5 | 16 ++---- backbone-3.0.2/backbone/NEWS.md | 4 + backbone-3.0.2/backbone/build/vignette.rds |binary backbone-3.0.2/backbone/inst/doc/backbone.html | 16 +++--- backbone-3.0.2/backbone/inst/doc/senate.html | 8 +-- backbone-3.0.2/backbone/inst/tinytest/test_backbone.R | 44 +++++++++--------- 11 files changed, 47 insertions(+), 47 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-08 1.1.2
2017-11-02 1.1.0
2016-07-23 1.0.8
2015-08-21 1.0.6
2014-08-25 1.0.4
2012-10-22 1.0.3
Title: Explore Socrata Data with Ease
Description: Provides an interface to search, read, query, and retrieve metadata for
datasets hosted on 'Socrata' open data portals. Supports all 'Socrata' data types,
including spatial data returned as 'sf' objects.
Author: Ryan Zomorrodi [aut, cre]
Maintainer: Ryan Zomorrodi <rzomor2@uic.edu>
Diff between socratadata versions 0.1.0 dated 2025-07-29 and 0.1.1 dated 2025-10-06
socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.eu.socrata.com/api/catalog/v1-8d6ed4.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-086e69.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-2966a2.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-378650.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-5e4d30.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-6a65c2.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-90329b.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-9cfe35.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-a9e053.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-b7b6cd.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-d51211.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-0cdddb.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-4fb6ef.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-5465e4.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-6b60a9.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-6b9c0e.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/data.cityofchicago.org/resource/zidz-sdfj.json-b588c9.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2646-ez2p.json-8b170d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2646-ez2p.json-c5430d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-8b170d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-c5430d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/7caz-dk9s.json-8b170d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/7caz-dk9s.json-c5430d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/kc76-ybeq.json-8b170d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/kc76-ybeq.json-c5430d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/w8wm-g3qx.json-8b170d.R |only socratadata-0.1.0/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/w8wm-g3qx.json-c5430d.R |only socratadata-0.1.1/socratadata/DESCRIPTION | 12 socratadata-0.1.1/socratadata/MD5 | 204 ++++---- socratadata-0.1.1/socratadata/NEWS.md | 6 socratadata-0.1.1/socratadata/R/extendr-wrappers.R | 4 socratadata-0.1.1/socratadata/R/links.R | 35 - socratadata-0.1.1/socratadata/R/req_v2.R |only socratadata-0.1.1/socratadata/R/req_v3.R |only socratadata-0.1.1/socratadata/R/soc_discover.R | 4 socratadata-0.1.1/socratadata/R/soc_list.R | 4 socratadata-0.1.1/socratadata/R/soc_metadata.R | 4 socratadata-0.1.1/socratadata/R/soc_query.R | 72 +- socratadata-0.1.1/socratadata/R/soc_read.R | 200 ++++--- socratadata-0.1.1/socratadata/README.md | 135 +++-- socratadata-0.1.1/socratadata/inst |only socratadata-0.1.1/socratadata/man/soc_discover.Rd | 5 socratadata-0.1.1/socratadata/man/soc_metadata.Rd | 5 socratadata-0.1.1/socratadata/man/soc_query.Rd | 7 socratadata-0.1.1/socratadata/man/soc_read.Rd | 25 socratadata-0.1.1/socratadata/src/Makevars.in | 2 socratadata-0.1.1/socratadata/src/rust/Cargo.lock | 77 +-- socratadata-0.1.1/socratadata/src/rust/Cargo.toml | 6 socratadata-0.1.1/socratadata/src/rust/src/lib.rs | 26 - socratadata-0.1.1/socratadata/src/rust/src/parse.rs | 14 socratadata-0.1.1/socratadata/src/rust/vendor.tar.xz |binary socratadata-0.1.1/socratadata/tests/testthat/helper.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.eu.socrata.com/api/catalog/v1-8d6ed4.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-086e69.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-2966a2.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-378650.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-5e4d30.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-6a65c2.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-90329b.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-9cfe35.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-a9e053.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-b7b6cd.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_discovery/api.us.socrata.com/api/catalog/v1-d51211.json |only socratadata-0.1.1/socratadata/tests/testthat/soc_metadata/soda.demo.socrata.com/api/views/2646-ez2p.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_metadata/soda.demo.socrata.com/d/2646-ez2p-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/api/views/2asz-g9qq.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/api/views/4tka-6guv.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/2asz-g9qq-4aa655-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/2asz-g9qq-639e3d-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/2asz-g9qq-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-032657-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-09079c-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-1d172e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-6bdc57-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-8e16b1-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-a8a1cc-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-a9f257-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/d/4tka-6guv-e0e382-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/2asz-g9qq.json-9aaaf6.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/2asz-g9qq.json-b2a73d.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-09c1ae.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-24299a.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-668050.R | 6 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-b16ff8.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-c2d7f8.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-c74aaf.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_query/soda.demo.socrata.com/resource/4tka-6guv.json-c7c8ee.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/data.cityofchicago.org/api/views/zidz-sdfj.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/data.cityofchicago.org/d/zidz-sdfj-096b6f-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/data.cityofchicago.org/d/zidz-sdfj-2c91be-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/data.cityofchicago.org/d/zidz-sdfj-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/data.cityofchicago.org/resource/zidz-sdfj.json-a2e38c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/2646-ez2p.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/2asz-g9qq.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/7caz-dk9s.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/jatp-jqxg.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/kc76-ybeq.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/api/views/w8wm-g3qx.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2646-ez2p-1d582e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2646-ez2p-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2646-ez2p-cce61a-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-03b1fd-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-089684-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-1d582e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-36713c-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-c4abb0-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-cce61a-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-ed8bfe-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/2asz-g9qq-f60cf0-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/7caz-dk9s-1d582e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/7caz-dk9s-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/7caz-dk9s-cce61a-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/jatp-jqxg-936c24-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/jatp-jqxg-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/jatp-jqxg-b9f58e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/kc76-ybeq-1d582e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/kc76-ybeq-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/kc76-ybeq-cce61a-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/w8wm-g3qx-1d582e-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/w8wm-g3qx-HEAD.R | 19 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/d/w8wm-g3qx-cce61a-POST.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2646-ez2p.json-c3f84c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2646-ez2p.json-e5075a.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-05abc6.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-105ff5.R | 12 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-454a5f.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-5e7e1e.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-7c4dc2.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-c3f84c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-e5075a.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/2asz-g9qq.json-f61f65.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/7caz-dk9s.json-c3f84c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/7caz-dk9s.json-e5075a.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/jatp-jqxg.json-71a521.R | 8 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/jatp-jqxg.json-856030.R | 10 socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/kc76-ybeq.json-c3f84c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/kc76-ybeq.json-e5075a.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/w8wm-g3qx.json-c3f84c.R |only socratadata-0.1.1/socratadata/tests/testthat/soc_read/soda.demo.socrata.com/resource/w8wm-g3qx.json-e5075a.R |only socratadata-0.1.1/socratadata/tests/testthat/test-parse_data_json.R | 46 + socratadata-0.1.1/socratadata/tests/testthat/test-soc_discovery.R | 2 socratadata-0.1.1/socratadata/tests/testthat/test-soc_query.R | 163 ++++-- socratadata-0.1.1/socratadata/tests/testthat/test-soc_read.R | 251 +++++++--- socratadata-0.1.1/socratadata/tools/config.R | 12 146 files changed, 1036 insertions(+), 699 deletions(-)
Title: Visualizing and Quantifying Decision Uncertainty
Description: A suite of tools to help modelers and decision-makers effectively
interpret and communicate decision risk when evaluating multiple policy options.
It uses model outputs from uncertainty analysis for baseline scenarios and policy
alternatives to generate visual representations of uncertainty and quantitative
measures for assessing associated risks. For more details see
Wiggins and colleagues (2025) <doi:10.1371/journal.pone.0332522> and <https://dut.ihe.ca/>.
Author: Megan Wiggins [aut, cre] ,
Marie Betsy Varughese [aut] ,
Ellen Rafferty [aut] ,
Sasha van Katwyk [aut] ,
Christopher McCabe [aut] ,
Jeff Round [aut] ,
Erin Kirwin [aut] ,
Institute of Health Economics [cph, aut],
Canadian Network for Modelling Infect [...truncated...]
Maintainer: Megan Wiggins <mwiggins@ihe.ca>
Diff between DUToolkit versions 1.0.1 dated 2025-09-16 and 1.0.2 dated 2025-10-06
DESCRIPTION | 9 - MD5 | 30 ++--- NEWS.md | 11 + README.md | 198 ++++++++++++++++++++++++++------- inst/doc/Calculating_Risk.html | 5 inst/doc/DUToolkit.Rmd | 2 inst/doc/DUToolkit.html | 8 - inst/doc/Fan_Plots.html | 5 inst/doc/density_plots.html | 5 inst/doc/rain_plot.html | 5 inst/doc/temporal_plot.html | 5 man/figures/README-density-1.png |binary man/figures/README-fan-1.png |binary man/figures/README-plot_temporal-1.png |binary man/figures/README-rain-1.png |binary vignettes/DUToolkit.Rmd | 2 16 files changed, 214 insertions(+), 71 deletions(-)
Title: Fetch United States Congressional Records (1995-Present)
Description: Fetch United States Congressional Records from their API <https://api.govinfo.gov/docs/> such as congressional
speeches, speaker names, and metadata about congressional sessions, and detailed granule records.
Optional parameters allow users to specify congressional sessions,
and the maximum number of speeches to retrieve. Data is parsed, cleaned, and
returned in a structured dataframe for analysis.
Author: Steph Buongiorno [aut, cre]
Maintainer: Steph Buongiorno <steph.buon@proton.me>
Diff between uscongress versions 1.0.0 dated 2025-05-12 and 1.0.2 dated 2025-10-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/zzz_helpers.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Tools for Tidy Vowel Normalization
Description: An implementation of tidy speaker vowel normalization.
This includes generic functions for defining new normalization methods for
points, formant tracks, and Discrete Cosine Transform coefficients, as well
as convenience functions implementing established normalization methods.
References for the implemented methods are:
Johnson, Keith (2020) <doi:10.5334/labphon.196>
Lobanov, Boris (1971) <doi:10.1121/1.1912396>
Nearey, Terrance M. (1978) <https://sites.ualberta.ca/~tnearey/Nearey1978_compressed.pdf>
Syrdal, Ann K., and Gopal, H. S. (1986) <doi:10.1121/1.393381>
Watt, Dominic, and Fabricius, Anne (2002) <https://www.latl.leeds.ac.uk/article/evaluation-of-a-technique-for-improving-the-mapping-of-multiple-speakers-vowel-spaces-in-the-f1-f2-plane/>.
Author: Josef Fruehwald [cre, aut, cph]
Maintainer: Josef Fruehwald <JoFrhwld@gmail.com>
Diff between tidynorm versions 0.3.0 dated 2025-06-16 and 0.3.1 dated 2025-10-06
tidynorm-0.3.0/tidynorm/man/figures/logo.svg |only tidynorm-0.3.1/tidynorm/DESCRIPTION | 10 tidynorm-0.3.1/tidynorm/MD5 | 45 ++-- tidynorm-0.3.1/tidynorm/NAMESPACE | 1 tidynorm-0.3.1/tidynorm/NEWS.md | 5 tidynorm-0.3.1/tidynorm/R/dct.R | 13 + tidynorm-0.3.1/tidynorm/R/dct_norm.R | 18 + tidynorm-0.3.1/tidynorm/R/norm.R | 62 +++--- tidynorm-0.3.1/tidynorm/R/ops.R |only tidynorm-0.3.1/tidynorm/R/tidynorm-package.R | 1 tidynorm-0.3.1/tidynorm/R/track_norm.R | 101 +++++++--- tidynorm-0.3.1/tidynorm/R/utils.R | 62 ++++++ tidynorm-0.3.1/tidynorm/README.md | 4 tidynorm-0.3.1/tidynorm/inst/doc/dct.html | 10 tidynorm-0.3.1/tidynorm/inst/doc/norm-methods.html | 41 ++-- tidynorm-0.3.1/tidynorm/inst/doc/normalization-overview.html | 10 tidynorm-0.3.1/tidynorm/inst/doc/normalizing_formant_tracks.html | 2 tidynorm-0.3.1/tidynorm/man/figures/README-norm-1.png |binary tidynorm-0.3.1/tidynorm/man/figures/README-rnorm-1.png |binary tidynorm-0.3.1/tidynorm/man/figures/README-unnorm-1.png |binary tidynorm-0.3.1/tidynorm/man/figures/logo.png |binary tidynorm-0.3.1/tidynorm/man/figures/logo_design.svg |only tidynorm-0.3.1/tidynorm/src/dct.cpp | 3 tidynorm-0.3.1/tidynorm/tests/testthat/test-formant-ops.R |only tidynorm-0.3.1/tidynorm/tests/testthat/test-transforms.R |only tidynorm-0.3.1/tidynorm/tests/testthat/test_barkz_errors.R |only tidynorm-0.3.1/tidynorm/tests/testthat/test_reloc.R |only 27 files changed, 278 insertions(+), 110 deletions(-)
Title: SOM Bound to Realize Euclidean and Relational Outputs
Description: The stochastic (also called on-line) version of the Self-Organising
Map (SOM) algorithm is provided. Different versions of the
algorithm are implemented, for numeric and relational data and for
contingency tables as described, respectively, in Kohonen (2001)
<isbn:3-540-67921-9>, Olteanu & Villa-Vialaneix (2005)
<doi:10.1016/j.neucom.2013.11.047> and Cottrell et al (2004)
<doi:10.1016/j.neunet.2004.07.010>. The package also contains many
plotting features (to help the user interpret the results), can
handle (and impute) missing values and is delivered with a
graphical user interface based on 'shiny'.
Author: Nathalie Vialaneix [aut, cre] ,
Elise Maigne [aut],
Jerome Mariette [aut],
Madalina Olteanu [aut],
Fabrice Rossi [aut],
Laura Bendhaiba [ctb],
Julien Boelaert [ctb]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Diff between SOMbrero versions 1.4.4 dated 2025-08-18 and 1.5.0 dated 2025-10-06
DESCRIPTION | 11 - MD5 | 42 ++++- NEWS.md | 8 R/superclasses.R | 292 ++++++++++++++++++++--------------- inst/doc/a-doc-SOMbrero-package.html | 12 - man/superClass.Rd | 11 + vignettes/c-doc-numericSOM_files |only 7 files changed, 233 insertions(+), 143 deletions(-)
Title: Estimate Gaussian and Student's t Mixture Vector Autoregressive
Models
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive, Student's t mixture vector autoregressive, and Gaussian and Student's t
mixture vector autoregressive models, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2025) <doi:10.1080/07350015.2024.2322090>,
Savi Virolainen (in press) <doi:10.1016/j.ecosta.2025.09.003>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 2.2.0 dated 2025-06-19 and 2.2.1 dated 2025-10-06
DESCRIPTION | 8 +-- MD5 | 106 ++++++++++++++++++++-------------------- NEWS.md | 5 + R/GIRFandGFEVD.R | 6 +- R/GSMVARconstruction.R | 29 ++++------ R/MAINest.R | 7 +- R/data.R | 15 ++--- R/generateParams.R | 9 +-- R/geneticAlgorithm.R | 7 +- R/linearIRF.R | 2 R/loglikelihood.R | 7 +- R/parameterReforms.R | 9 +-- R/uncondMoments.R | 9 +-- README.md | 15 ++--- inst/doc/gmvarkit-vignette.Rnw | 1 inst/doc/gmvarkit-vignette.pdf |binary man/GAfit.Rd | 7 +- man/GFEVD.Rd | 6 +- man/GSMVAR.Rd | 7 +- man/Pearson_residuals.Rd | 7 +- man/add_data.Rd | 7 +- man/alt_gsmvar.Rd | 7 +- man/cond_moment_plot.Rd | 7 +- man/cond_moments.Rd | 7 +- man/diagnostic_plot.Rd | 7 +- man/estimate_sgsmvar.Rd | 7 +- man/euromone.Rd | 9 +-- man/fitGSMVAR.Rd | 7 +- man/get_Sigmas.Rd | 9 +-- man/get_regime_autocovs.Rd | 7 +- man/get_regime_autocovs_int.Rd | 7 +- man/get_test_Omega.Rd | 7 +- man/gsmvar_to_sgsmvar.Rd | 7 +- man/iterate_more.Rd | 7 +- man/linear_IRF.Rd | 2 man/loglikelihood.Rd | 7 +- man/loglikelihood_int.Rd | 7 +- man/print_std_errors.Rd | 7 +- man/profile_logliks.Rd | 7 +- man/quantile_residual_tests.Rd | 7 +- man/quantile_residuals.Rd | 7 +- man/quantile_residuals_int.Rd | 7 +- man/random_ind2.Rd | 9 +-- man/simulate.gsmvar.Rd | 7 +- man/simulate_gsmvar_int.Rd | 7 +- man/sort_W_and_lambdas.Rd | 9 +-- man/stmvar_to_gstmvar.Rd | 8 +-- man/swap_parametrization.Rd | 7 +- man/uncond_moments.Rd | 7 +- man/uncond_moments_int.Rd | 7 +- man/usamon.Rd | 2 man/usamone.Rd | 4 - vignettes/gmvarkit-vignette.Rnw | 1 vignettes/refs.bib | 29 ++++++---- 54 files changed, 239 insertions(+), 273 deletions(-)
Title: Exponential-Family Random Network Models
Description: Estimation of fully and partially observed Exponential-Family Random Network Models (ERNM). Exponential-family Random Graph Models (ERGM) and Gibbs Fields are special cases of ERNMs and can also be estimated with the package. Please cite Fellows and Handcock (2012), "Exponential-family Random Network Models" available at <doi:10.48550/arXiv.1208.0121>.
Author: Ian Fellows [aut],
Duncan Clark [aut, cre]
Maintainer: Duncan Clark <dac6@williams.edu>
Diff between ernm versions 1.0.2 dated 2025-07-28 and 1.0.3 dated 2025-10-06
ernm-1.0.2/ernm/man/as.BinaryNet.Rd |only ernm-1.0.2/ernm/man/as.network.DirectedNet.Rd |only ernm-1.0.2/ernm/man/as.network.Rcpp_DirectedNet.Rd |only ernm-1.0.2/ernm/man/as.network.Rcpp_UndirectedNet.Rd |only ernm-1.0.2/ernm/man/as.network.UndirectedNet.Rd |only ernm-1.0.2/ernm/man/plot.Rcpp_DirectedNet.Rd |only ernm-1.0.2/ernm/man/plot.Rcpp_UndirectedNet.Rd |only ernm-1.0.3/ernm/DESCRIPTION | 8 ernm-1.0.3/ernm/MD5 | 108 +++--- ernm-1.0.3/ernm/NAMESPACE | 6 ernm-1.0.3/ernm/R/00-classes.R | 6 ernm-1.0.3/ernm/R/BinaryNet.R | 152 +++++++-- ernm-1.0.3/ernm/R/ernm-fit.R | 44 +- ernm-1.0.3/ernm/R/ernm-gof.R | 104 ++++-- ernm-1.0.3/ernm/R/ernm-methods.R | 296 +++++-------------- ernm-1.0.3/ernm/R/ernm-models.R | 78 ++--- ernm-1.0.3/ernm/R/ernm.R | 189 ++++++++++-- ernm-1.0.3/ernm/R/likelihoods.R | 108 ++++-- ernm-1.0.3/ernm/R/method_registration.R | 1 ernm-1.0.3/ernm/R/roxygen.R | 240 ++++++++++++++- ernm-1.0.3/ernm/R/util.R | 17 - ernm-1.0.3/ernm/README.md | 189 +++++++++++- ernm-1.0.3/ernm/inst/include/BinaryNet.h | 6 ernm-1.0.3/ernm/inst/include/Constraints.h | 2 ernm-1.0.3/ernm/inst/include/DyadToggles.h | 3 ernm-1.0.3/ernm/man/BinaryNet.Rd | 112 ++++++- ernm-1.0.3/ernm/man/DirectedNet-class.Rd | 2 ernm-1.0.3/ernm/man/ErnmModels.Rd | 5 ernm-1.0.3/ernm/man/ErnmSamplers.Rd | 5 ernm-1.0.3/ernm/man/Figures |only ernm-1.0.3/ernm/man/MissingErnmModel.Rd | 8 ernm-1.0.3/ernm/man/UndirectedNet-class.Rd | 2 ernm-1.0.3/ernm/man/calculateStatistics.Rd | 18 - ernm-1.0.3/ernm/man/call-symbols.Rd | 3 ernm-1.0.3/ernm/man/createCppModel.Rd | 24 + ernm-1.0.3/ernm/man/createCppSampler.Rd | 65 +++- ernm-1.0.3/ernm/man/ernm-formula.Rd |only ernm-1.0.3/ernm/man/ernm-terms.Rd |only ernm-1.0.3/ernm/man/ernm.Rd | 43 ++ ernm-1.0.3/ernm/man/ernmFit.Rd | 26 - ernm-1.0.3/ernm/man/ernmPackageSkeleton.Rd | 2 ernm-1.0.3/ernm/man/ernm_gof.Rd | 56 ++- ernm-1.0.3/ernm/man/extract-methods.Rd | 41 ++ ernm-1.0.3/ernm/man/fullErnmLikelihood.Rd | 12 ernm-1.0.3/ernm/man/logLik.ernm.Rd |only ernm-1.0.3/ernm/man/marErnmLikelihood.Rd | 8 ernm-1.0.3/ernm/man/mcmcEss.Rd | 6 ernm-1.0.3/ernm/man/mcmcse.Rd | 6 ernm-1.0.3/ernm/man/plot.ernm.Rd | 2 ernm-1.0.3/ernm/man/print.ErnmSummary.Rd |only ernm-1.0.3/ernm/man/print.ernm.Rd | 4 ernm-1.0.3/ernm/man/registerDirectedStatistic.Rd | 5 ernm-1.0.3/ernm/man/register_rcpp_net_methods.Rd | 1 ernm-1.0.3/ernm/man/runErnmCppTests.Rd | 7 ernm-1.0.3/ernm/man/simulateStatistics.Rd | 21 + ernm-1.0.3/ernm/man/summary.ernm.Rd | 6 ernm-1.0.3/ernm/man/taperedErnmLikelihood.Rd | 8 ernm-1.0.3/ernm/src/VarAttrib.cpp | 3 ernm-1.0.3/ernm/src/test_TaperedModel.cpp | 4 ernm-1.0.3/ernm/tests/testthat/test-BinaryNet.R | 1 60 files changed, 1447 insertions(+), 616 deletions(-)
Title: Non-Crossing Additive Regression Quantiles and Non-Parametric
Growth Charts
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms, including varying coefficients, via B-splines with L1-norm difference penalties.
Random intercepts and variable selection are allowed via the lasso penalties.
The smoothing parameters are estimated as part of the model fitting, see Muggeo and others (2021) <doi:10.1177/1471082X20929802>. Monotonicity and concavity
constraints on the fitted curves are allowed, see Muggeo and others (2013) <doi:10.1007/s10651-012-0232-1>,
and also <doi:10.13140/RG.2.2.12924.85122> or <doi:10.13140/RG.2.2.29306.21445> some code examples.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 1.7-1 dated 2024-05-20 and 1.7-2 dated 2025-10-06
DESCRIPTION | 11 - MD5 | 30 +-- NEWS | 44 ---- R/gcrq.r | 45 +++-- R/ncross.rq.fitX.R | 345 ++++++++++++++++++++++++-------------- R/ncross.rq.fitXB.r | 375 ++++++++++++++++++++++++++---------------- R/ncross.rq.fitXBsparse.r | 25 +- build/vignette.rds |binary inst/doc/quantregGrowth.R | 30 ++- inst/doc/quantregGrowth.Rmd | 16 + inst/doc/quantregGrowth.html | 256 ++++++++++++---------------- man/gcrq.Rd | 24 +- man/logLik.gcrq.Rd | 4 man/ncross.rq.fitXB.Rd | 12 + man/quantregGrowth-package.Rd | 4 vignettes/quantregGrowth.Rmd | 16 + 16 files changed, 711 insertions(+), 526 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: Do 16s Data Analysis and Generate Figures
Description: Provides functions to enhance the available
statistical analysis procedures in R by providing simple functions to
analysis and visualize the 16S rRNA data.Here we present a tutorial
with minimum working examples to demonstrate usage and dependencies.
Author: Kai Guo [aut, cre],
Pan Gao [aut]
Maintainer: Kai Guo <guokai8@gmail.com>
Diff between microbial versions 0.0.21 dated 2024-05-15 and 0.0.22 dated 2025-10-06
DESCRIPTION | 8 - MD5 | 16 +-- R/Functions.R | 18 +-- build/vignette.rds |binary inst/doc/microbial.R | 24 ++-- inst/doc/microbial.Rmd | 4 inst/doc/microbial.html | 252 +++++++++++++++++++++++------------------------- man/preRef.Rd | 5 vignettes/microbial.Rmd | 4 9 files changed, 156 insertions(+), 175 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 0.6.2 dated 2025-08-20 and 0.6.3 dated 2025-10-06
DESCRIPTION | 6 MD5 | 26 +-- NEWS.md | 6 R/MaestroPipeline.R | 5 inst/doc/maestro-1-quick-start.html | 6 inst/doc/maestro-2-motivation-concepts.html | 141 +++++++++++++++++ inst/doc/maestro-3-advanced-scheduling.html | 157 ++++++++++++++++++- inst/doc/maestro-3-advanced-scheduling.qmd | 2 inst/doc/maestro-4-directed-acyclic-graphs.html | 18 +- inst/doc/maestro-5-logging.html | 191 ++++++++++++++++++++---- inst/doc/maestro-6-deployment.html | 141 +++++++++++++++++ inst/doc/maestro-7-tag-reference.html | 141 +++++++++++++++++ man/figures/README-/unnamed-chunk-3.svg | 2 vignettes/maestro-3-advanced-scheduling.qmd | 2 14 files changed, 772 insertions(+), 72 deletions(-)
Title: A Very Fast 2D Concave Hull Algorithm
Description: The concaveman function ports the 'concaveman' (<https://github.com/mapbox/concaveman>) library from 'mapbox'. It computes the concave polygon(s) for one or several set of points.
Author: Joel Gombin [cre, aut],
Ramnath Vaidyanathan [aut],
Vladimir Agafonkin [aut],
Mapbox [cph]
Maintainer: Joel Gombin <joel.gombin@gmail.com>
Diff between concaveman versions 1.1.0 dated 2020-05-11 and 1.2.0 dated 2025-10-06
DESCRIPTION | 14 +++++++------- MD5 | 15 ++++++++------- NAMESPACE | 2 +- NEWS.md | 3 +++ R/concaveman-pkg.R | 9 ++------- R/concaveman.R | 39 ++++++++++++++++++++++++++++++--------- man/concaveman-package.Rd |only man/concaveman.Rd | 10 +++++----- tests/testthat/test_concaveman.R | 16 ++++++++++++++++ 9 files changed, 72 insertions(+), 36 deletions(-)
Title: Nominal Data Mining Analysis
Description: Functions for nominal data mining based on bipartite graphs, which build a pipeline for analysis and missing values imputation. Methods are mainly from the paper: Jafari, Mohieddin, et al. (2021) <doi:10.1101/2021.03.18.436040>, some new ones are also included.
Author: Mohieddin Jafari [aut, cre],
Cheng Chen [aut],
Zangene Ehsan [aut]
Maintainer: Mohieddin Jafari <mohieddin.jafari@helsinki.fi>
Diff between NIMAA versions 0.2.1 dated 2022-04-11 and 0.2.2 dated 2025-10-06
NIMAA-0.2.1/NIMAA/man/NIMAA.Rd |only NIMAA-0.2.2/NIMAA/DESCRIPTION | 17 NIMAA-0.2.2/NIMAA/MD5 | 26 - NIMAA-0.2.2/NIMAA/NEWS.md | 4 NIMAA-0.2.2/NIMAA/R/NIMAA-package.R | 4 NIMAA-0.2.2/NIMAA/R/data.R | 2 NIMAA-0.2.2/NIMAA/R/plot-incidence-matrix.R | 2 NIMAA-0.2.2/NIMAA/README.md | 4 NIMAA-0.2.2/NIMAA/build/vignette.rds |binary NIMAA-0.2.2/NIMAA/inst/doc/NIMAA-vignette.R | 38 - NIMAA-0.2.2/NIMAA/inst/doc/NIMAA-vignette.html | 540 ++++++++++++------------- NIMAA-0.2.2/NIMAA/man/NIMAA-package.Rd |only NIMAA-0.2.2/NIMAA/man/beatAML.Rd | 2 NIMAA-0.2.2/NIMAA/man/figures/logo.png |binary NIMAA-0.2.2/NIMAA/man/plotIncMatrix.Rd | 2 15 files changed, 330 insertions(+), 311 deletions(-)
Title: Fitting a Log-Binomial Model Using the Bekhit–Schöpe–Wagenpfeil
(BSW) Algorithm
Description: Implements a modified Newton-type algorithm (BSW algorithm) for solving the maximum likelihood estimation problem in fitting a log-binomial model under linear inequality constraints.
Author: Adam Bekhit [aut],
Jakob Schoepe [aut],
Thomas Wolf [aut] ,
Julius Johannes Weise [aut, cre] ,
Stefan Wagenpfeil [aut]
Maintainer: Julius Johannes Weise <imbei@med-imbei.uni-saarland.de>
Diff between BSW versions 0.1.1 dated 2021-03-22 and 0.1.2 dated 2025-10-06
DESCRIPTION | 48 - MD5 | 34 NAMESPACE | 15 NEWS.md |only R/bootbsw.R |only R/bsw.R | 63 + R/constr.R | 24 R/hess.R | 6 R/obj_value.R |only R/print_bootbsw.R |only R/print_var_sel.R |only R/variable_selection_bsw.R |only build/vignette.rds |binary inst/doc/Validation.R | 98 +- inst/doc/Validation.html | 716 +++++++++++++-------- man/bootbsw.Rd |only man/bsw.Rd | 14 man/constr.Rd | 4 man/variable_selection_bsw.Rd |only tests/testthat/test-bootstrap-multiple-variables.R |only tests/testthat/test-bootstrap.R |only tests/testthat/test-parameters.R | 64 - tests/testthat/test-var-selection-nonsignificant.R |only tests/testthat/test-var-selection.R |only 24 files changed, 694 insertions(+), 392 deletions(-)
Title: Testing in Conditional Likelihood Context
Description: An implementation of hypothesis testing in an extended Rasch modeling framework,
including sample size planning procedures and power computations. Provides 4 statistical tests,
i.e., gradient test (GR), likelihood ratio test (LR), Rao score or Lagrange multiplier test (RS),
and Wald test, for testing a number of hypotheses referring to the Rasch model (RM), linear
logistic test model (LLTM), rating scale model (RSM), and partial credit model (PCM). Three
types of functions for power and sample size computations are provided. Firstly, functions to
compute the sample size given a user-specified (predetermined) deviation from the hypothesis
to be tested, the level alpha, and the power of the test. Secondly, functions to evaluate the
power of the tests given a user-specified (predetermined) deviation from the hypothesis to be
tested, the level alpha of the test, and the sample size. Thirdly, functions to evaluate the
so-called post hoc power of the tests. This is the power of the tests giv [...truncated...]
Author: Clemens Draxler [aut, cre],
Andreas Kurz [aut]
Maintainer: Clemens Draxler <clemens.draxler@umit-tirol.at>
Diff between tcl versions 0.2.1 dated 2024-09-16 and 1.0.1 dated 2025-10-06
DESCRIPTION | 12 ++- MD5 | 88 +++++++++++++++------------ NAMESPACE | 6 + NEWS.md |only R/LLTM_test.R | 39 ++++++++---- R/change_test.R | 42 ++++++++----- R/cml_power.R |only R/discr_test.R | 54 ++++++++++------ R/eRm_cml.R | 2 R/get_eRm_arg.R |only R/invar_test.R | 68 +++++++++++++++------ R/mix_mod.R |only R/opt_n.R |only R/post_hocChange.R | 70 ++++++++++++--------- R/post_hocPCM.R | 101 +++++++++++++++++-------------- R/post_hocRM.R | 79 ++++++++++++++---------- R/powerChange.R | 67 ++++++++++++-------- R/powerPCM.R | 115 ++++++++++++++++++++++++----------- R/powerRM.R | 122 +++++++++++++++++++++++++------------- R/sa_sizeChange.R | 79 ++++++++++++++---------- R/sa_sizePCM.R | 144 ++++++++++++++++++++++++++++----------------- R/sa_sizeRM.R | 126 +++++++++++++++++++++++++-------------- R/tcl_helperfunctions.R | 67 ++++++++++++++++++++ R/tcl_hessian.R | 23 +++---- R/tcl_scorefun.R | 23 +++---- README.md |only build/vignette.rds |binary inst/doc/tcl-vignette.R | 3 inst/doc/tcl-vignette.Rmd | 4 - inst/doc/tcl-vignette.html | 103 -------------------------------- man/LLTM_test.Rd | 13 ++-- man/change_test.Rd | 9 +- man/cml_power.Rd |only man/discr_test.Rd | 25 ++++--- man/get_eRm_arg.Rd |only man/invar_test.Rd | 36 +++++++---- man/mix_mod.Rd |only man/opt_n.Rd |only man/post_hocChange.Rd | 32 +++++----- man/post_hocPCM.Rd | 58 +++++++++--------- man/post_hocRM.Rd | 36 +++++------ man/powerChange.Rd | 29 ++++----- man/powerPCM.Rd | 58 +++++++++++------- man/powerRM.Rd | 57 ++++++++++------- man/sa_sizeChange.Rd | 32 +++++----- man/sa_sizePCM.Rd | 68 +++++++++++++-------- man/sa_sizeRM.Rd | 63 +++++++++++-------- man/tcl_hessian.Rd | 10 +-- man/tcl_scorefun.Rd | 10 +-- vignettes/tcl-vignette.Rmd | 4 - 50 files changed, 1149 insertions(+), 828 deletions(-)
Title: Regression Trees with Shrinkage Priors
Description: Bayesian regression tree models with shrinkage priors on
step heights. Supports continuous, binary, and right-censored (survival)
outcomes. Used for high-dimensional prediction and causal inference.
Author: Tijn Jacobs [aut, cre]
Maintainer: Tijn Jacobs <t.jacobs@vu.nl>
Diff between ShrinkageTrees versions 1.0.0 dated 2025-07-21 and 1.0.2 dated 2025-10-06
DESCRIPTION | 8 +-- MD5 | 28 +++++----- R/CausalHorseForest.R | 5 + R/CausalShrinkageForest.R | 5 + R/HorseTrees.R | 7 ++ R/ShrinkageTrees.R | 6 ++ README.md | 28 +++++++++- demo/pdac_analysis.R | 47 ++++++++---------- src/OuterGibbsFunctions.cpp | 74 +++++++++++++++++++++++++++++ src/OuterGibbsFunctions.h | 14 +++++ src/probit-HorseTrees.cpp | 2 tests/testthat/test-CausalHorseForest.R | 4 - tests/testthat/test-CausalShrinkageTrees.R | 8 +-- tests/testthat/test-HorseTrees.R | 4 - tests/testthat/test-ShrinkageTrees.R | 10 +-- 15 files changed, 186 insertions(+), 64 deletions(-)
More information about ShrinkageTrees at CRAN
Permanent link
Title: Load Configuration Values
Description: A simple approach to configuring R projects with different
parameter values. Configurations are specified using a reduced subset of base
R and parsed accordingly.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ronfig versions 0.0.3 dated 2025-09-24 and 0.0.4 dated 2025-10-06
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/load_config.R | 32 ++++++++++++++++++++++---------- inst/doc/ronfig.R | 10 +++++++++- inst/doc/ronfig.Rmd | 24 +++++++++++++++++++++++- inst/doc/ronfig.html | 33 +++++++++++++++++++++++++++++++++ man/load_config.Rd | 18 ++++++++++++++++-- tests/testthat/_snaps/load_config.md | 12 +++++------- tests/testthat/test-load_config.R | 14 ++++++++++---- vignettes/ronfig.Rmd | 24 +++++++++++++++++++++++- 11 files changed, 161 insertions(+), 39 deletions(-)
Title: Optimal Graph Partition using the Persistence
Description: Calculate the optimal vertex partition of a graph using the persistence as objective function.
These subroutines have been used in Avellone et al. <doi:10.1007/s10288-023-00559-z>.
Author: Alessandro Avellone [aut, cre],
Paolo Bartesaghi [aut],
Stefano Benati [aut],
Rosanna Grassi [aut]
Maintainer: Alessandro Avellone <alessandro.avellone@unimib.it>
Diff between persistence versions 0.1.0 dated 2025-05-21 and 0.2.0 dated 2025-10-06
DESCRIPTION | 6 MD5 | 28 - R/cluster_milano.R | 43 ++ R/global_persistence.R | 34 + R/local_persistence.R | 33 + man/cluster_milano.Rd | 14 man/global_persistence.Rd | 7 man/local_persistence.Rd | 10 src/communityMeasure.h | 793 +++++++++++++++++++++++++++++++++------------- src/grafi.h | 16 src/louvainMethod.cpp | 335 +++++++++++-------- src/louvainMethod.h | 7 src/rwrapper.cpp | 121 +++---- src/rwrapper.h | 7 src/utilita.cpp | 38 -- 15 files changed, 993 insertions(+), 499 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between performance versions 0.15.1 dated 2025-08-30 and 0.15.2 dated 2025-10-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ tests/testthat/test-check_outliers.R | 3 ++- tests/testthat/test-model_performance.bayesian.R | 12 ++++++------ 5 files changed, 22 insertions(+), 15 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.6.0 dated 2025-07-18 and 0.7.0 dated 2025-10-06
DESCRIPTION | 13 +++--- MD5 | 20 ++++----- NAMESPACE | 4 - NEWS.md | 4 + R/DataBackendPolars.R | 69 +++++++++++++++----------------- README.md | 2 man/DataBackendPolars.Rd | 22 ++++------ man/as_duckdb_backend.Rd | 2 man/as_sqlite_backend.Rd | 2 man/mlr3db-package.Rd | 7 +-- tests/testthat/test_as_polars_backend.R | 2 11 files changed, 74 insertions(+), 73 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network. Modern networking and concurrency, built on 'nanonext' and
'NNG', ensures reliable scheduling over fast inter-process
communications or TCP/IP secured by TLS. Launch remote resources via
SSH or cluster managers for distributed computing. Scales efficiently
to millions of tasks over thousands of connections, requiring no
storage on the file system due to its inherently queued architecture.
Innovative features include event-driven promises, asynchronous
parallel map, and seamless serialization of otherwise non-exportable
reference objects.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.5.0 dated 2025-09-04 and 2.5.1 dated 2025-10-06
DESCRIPTION | 10 +- MD5 | 101 +++++++++++----------- NAMESPACE | 3 NEWS.md | 23 +++++ R/daemon.R | 183 ++++++++++++++++++++-------------------- R/daemons.R | 165 +++++++++++++++++++----------------- R/dispatcher.R | 37 +------- R/launchers.R | 67 ++++++-------- R/map.R | 5 - R/mirai-package.R | 15 ++- R/mirai.R | 92 ++++++++++++++++---- R/next.R | 8 - R/parallel.R | 26 ++--- README.md | 49 +++++----- inst/doc/mirai.Rmd | 145 ++++++++++++++++++++----------- inst/doc/mirai.html | 136 +++++++++++++++++++---------- inst/doc/v01-map.Rmd | 27 +++-- inst/doc/v01-map.html | 28 +++--- inst/doc/v02-promises.Rmd | 43 ++++----- inst/doc/v02-promises.html | 43 ++++----- inst/doc/v05-opentelemetry.Rmd | 60 +++++++------ inst/doc/v05-opentelemetry.html | 58 +++++++----- inst/doc/v07-questions.Rmd | 22 ++-- inst/doc/v07-questions.html | 22 ++-- man/call_mirai.Rd | 3 man/cluster_config.Rd | 17 +-- man/daemon.Rd | 93 +++++++++----------- man/daemons.Rd | 94 ++++++++++++-------- man/daemons_set.Rd | 5 - man/dispatcher.Rd | 4 man/everywhere.Rd | 12 +- man/host_url.Rd | 17 +-- man/info.Rd | 5 - man/launch_local.Rd | 24 +---- man/make_cluster.Rd | 15 +-- man/mirai-package.Rd | 2 man/mirai.Rd | 11 +- man/mirai_map.Rd | 5 - man/nextstream.Rd | 13 +- man/race_mirai.Rd |only man/remote_config.Rd | 13 +- man/require_daemons.Rd | 5 - man/ssh_config.Rd | 16 +-- man/status.Rd | 13 -- man/unresolved.Rd | 3 man/with_daemons.Rd | 9 - tests/tests.R | 132 +++++++++++++++++----------- vignettes/mirai.Rmd | 145 ++++++++++++++++++++----------- vignettes/v01-map.Rmd | 27 +++-- vignettes/v02-promises.Rmd | 43 ++++----- vignettes/v05-opentelemetry.Rmd | 60 +++++++------ vignettes/v07-questions.Rmd | 22 ++-- 52 files changed, 1209 insertions(+), 967 deletions(-)
Title: Microeconomic Analysis and Modelling
Description: Various tools for microeconomic analysis and microeconomic modelling,
e.g. estimating quadratic, Cobb-Douglas and Translog functions,
calculating partial derivatives and elasticities of these functions,
and calculating Hessian matrices, checking curvature
and preparing restrictions for imposing monotonicity of Translog functions.
Author: Arne Henningsen [aut, cre]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between micEcon versions 0.6-18 dated 2022-09-03 and 0.6-20 dated 2025-10-06
DESCRIPTION | 17 +++++++++++------ MD5 | 10 +++++----- NAMESPACE | 2 -- NEWS | 8 ++++++++ build/partial.rdb |binary man/translogCheckCurvature.Rd | 6 +++--- 6 files changed, 27 insertions(+), 16 deletions(-)
More information about conformalForecast at CRAN
Permanent link
Title: Treatment Switching
Description: Implements rank-preserving structural failure time model (RPSFTM), iterative parameter estimation (IPE), inverse probability of censoring weights (IPCW), marginal structural model (MSM), simple two-stage estimation (TSEsimp), and improved two-stage with g-estimation (TSEgest) methods for treatment switching in randomized clinical trials.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between trtswitch versions 0.1.9 dated 2025-09-03 and 0.2.0 dated 2025-10-06
DESCRIPTION | 11 MD5 | 106 ++-- NAMESPACE | 12 NEWS.md | 19 R/RcppExports.R | 91 ++- R/data.R | 38 + R/ipcw.R | 908 +++++++++++++++++------------------ R/ipe.R | 11 R/msm.R | 856 ++++++++++++++++---------------- R/preptdc.R |only R/rpsftm.R | 7 R/trtswitch-package.R | 19 R/tsegest.R | 21 data/adsl.rda |only data/adtdc.rda |only inst/doc/ipcw.R | 4 inst/doc/ipcw.Rmd | 354 ++++++------- inst/doc/ipcw.html | 45 - inst/doc/ipe.html | 5 inst/doc/msm.R | 4 inst/doc/msm.Rmd | 216 ++++---- inst/doc/msm.html | 49 - inst/doc/rpsftm.html | 5 inst/doc/tsegest.R | 2 inst/doc/tsegest.Rmd | 9 inst/doc/tsegest.html | 52 +- inst/doc/tsesimp.html | 5 man/adsl.Rd |only man/adtdc.Rd |only man/findInterval3.Rd | 14 man/ipcw.Rd | 8 man/ipe.Rd | 6 man/msm.Rd | 10 man/preptdc.Rd |only man/rpsftm.Rd | 6 man/trtswitch-package.Rd | 17 man/tsegest.Rd | 15 man/tssim.Rd | 48 + src/RcppExports.cpp | 76 +- src/ipcw.cpp | 197 ++++--- src/ipe.cpp | 68 ++ src/msm.cpp | 129 +++- src/rpsftm.cpp | 108 +++- src/splines.cpp | 2 src/survival_analysis.cpp | 256 +++++---- src/tsegest.cpp | 303 ++++++++--- src/tsesimp.cpp | 61 +- src/tssim.cpp | 255 +++++---- src/utilities.cpp | 193 ++++--- src/utilities.h | 12 tests/testthat/test-ipcw.R | 312 ++++++------ tests/testthat/test-msm.R | 174 +++--- tests/testthat/test-survfit_phregr.R | 14 tests/testthat/test-tsegest.R | 14 vignettes/ipcw.Rmd | 354 ++++++------- vignettes/msm.Rmd | 216 ++++---- vignettes/tsegest.Rmd | 9 57 files changed, 3207 insertions(+), 2519 deletions(-)
Title: Protein Quantification in Mass Spectrometry-Based Proteomics
Description: An implementation of the MaxLFQ algorithm by
Cox et al. (2014) <doi:10.1074/mcp.M113.031591> in a comprehensive
pipeline for processing proteomics data in data-independent acquisition mode
(Pham et al. 2020 <doi:10.1093/bioinformatics/btz961>).
It offers additional options for protein quantification using
the N most intense fragment ions, using all fragment ions,
the median polish algorithm by Tukey (1977, ISBN:0201076160), and a robust linear model.
In general, the tool can be used to integrate multiple
proportional observations into a single quantitative value.
Author: Thang Pham [aut, cre, cph, ctb] ,
Alex Henneman [ctb]
Maintainer: Thang Pham <t.pham@amsterdamumc.nl>
Diff between iq versions 1.10.1 dated 2024-12-04 and 2.0.0 dated 2025-10-06
DESCRIPTION | 16 LICENSE | 2 MD5 | 52 - R/iq-fast.R | 45 + R/iq-format.R |only R/iq.R | 1270 ++++++++++++++++++++-------------------- build/vignette.rds |binary inst/CITATION | 22 inst/doc/iq-fast.Rmd | 1030 ++++++++++++++++---------------- inst/doc/iq.Rmd | 858 +++++++++++++-------------- man/connected_component.Rd |only man/fast_MaxLFQ.Rd | 60 - man/fast_preprocess.Rd | 78 +- man/fast_read.Rd | 114 +-- man/long_format_to_iq_format.Rd |only man/maxLFQ.Rd | 60 - man/meanInt.Rd | 54 - man/median_polish.Rd | 58 - man/process_iq_format.Rd |only man/process_long_format.Rd | 7 man/process_matrix.Rd |only man/process_wide_format.Rd | 94 +- man/rescale.Rd |only man/spikeins.Rd | 58 - man/topN.Rd | 56 - src/coordinate_descent.h |only src/iq.cpp | 482 +++++++++++++++ src/maxlfq.h |only src/maxlfq_bit.h |only src/utils.h |only vignettes/iq-fast.Rmd | 1030 ++++++++++++++++---------------- vignettes/iq.Rmd | 858 +++++++++++++-------------- 32 files changed, 3412 insertions(+), 2892 deletions(-)
Title: Manipulating DNA Sequences and Estimating Unambiguous Haplotype
Network with Statistical Parsimony
Description: Provides S4 classes and methods for reading and manipulating aligned DNA sequences, supporting an indel-coding method (only simple indel-coding method is available in the current version), showing base substitutions and indels, calculating absolute pairwise distances between DNA sequences, and collapsing identical DNA sequences into haplotypes or inferring haplotypes using user-provided absolute pairwise character difference matrix. This package also includes S4 classes and methods for estimating genealogical relationships among haplotypes using statistical parsimony and plotting parsimony networks.
Author: Caner Aktas [aut, cre]
Maintainer: Caner Aktas <caktas.aca@gmail.com>
Diff between haplotypes versions 1.1.3.1 dated 2023-07-15 and 1.1.3.2 dated 2025-10-06
DESCRIPTION | 18 ++++++++++-------- MD5 | 22 +++++++++++----------- man/Parsimnet-class.Rd | 4 ++-- man/as.DNAbin-methods.Rd | 4 ++-- man/as.dna-methods.Rd | 6 +++--- man/as.network-methods.Rd | 6 +++--- man/as.networx-methods.Rd | 6 +++--- man/as.phyDat-methods.Rd | 4 ++-- man/parsimnet-methods.Rd | 2 +- man/pielegend-methods.Rd | 2 +- man/pieplot-methods.Rd | 10 +++++----- man/plot-methods.Rd | 6 +++--- 12 files changed, 46 insertions(+), 44 deletions(-)
Title: Utilities for Graphical Rendering and Fonts Management
Description: Tools are provided to compute metrics of formatted strings
and to check the availability of a font. Another set of functions is
provided to support the collection of fonts from 'Google Fonts' in a
cache. Their use is simple within 'R Markdown' documents and 'shiny'
applications but also with graphic productions generated with the
'ggiraph', 'ragg' and 'svglite' packages or with tabular productions
from the 'flextable' package.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] ,
Yixuan Qiu [ctb],
R Core Team [cph] ,
ArData [cph],
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.4.3 dated 2025-08-26 and 0.4.4 dated 2025-10-06
gdtools-0.4.3/gdtools/R/liberation-sans.R |only gdtools-0.4.3/gdtools/R/raster.R |only gdtools-0.4.3/gdtools/man/fontconfig_reinit.Rd |only gdtools-0.4.3/gdtools/man/glyphs_match.Rd |only gdtools-0.4.3/gdtools/man/raster_str.Rd |only gdtools-0.4.3/gdtools/man/raster_write.Rd |only gdtools-0.4.3/gdtools/src/raster_to_base64.cpp |only gdtools-0.4.3/gdtools/tests/testthat/test-raster.R |only gdtools-0.4.4/gdtools/DESCRIPTION | 10 gdtools-0.4.4/gdtools/MD5 | 54 +- gdtools-0.4.4/gdtools/NAMESPACE | 12 gdtools-0.4.4/gdtools/NEWS.md | 7 gdtools-0.4.4/gdtools/R/RcppExports.R | 28 - gdtools-0.4.4/gdtools/R/fontconfig.R | 18 gdtools-0.4.4/gdtools/R/liberation.R |only gdtools-0.4.4/gdtools/R/str-metrics.R | 77 ++- gdtools-0.4.4/gdtools/inst/css/liberation-mono.css |only gdtools-0.4.4/gdtools/inst/css/liberation-serif.css |only gdtools-0.4.4/gdtools/inst/include/gdtools_RcppExports.h | 126 ------ gdtools-0.4.4/gdtools/man/addGFontHtmlDependency.Rd | 6 gdtools-0.4.4/gdtools/man/fonts_cache_dir.Rd | 6 gdtools-0.4.4/gdtools/man/gfontHtmlDependency.Rd | 6 gdtools-0.4.4/gdtools/man/install_gfont_script.Rd | 6 gdtools-0.4.4/gdtools/man/installed_gfonts.Rd | 6 gdtools-0.4.4/gdtools/man/liberationmonoHtmlDependency.Rd |only gdtools-0.4.4/gdtools/man/liberationsansHtmlDependency.Rd | 8 gdtools-0.4.4/gdtools/man/liberationserifHtmlDependency.Rd |only gdtools-0.4.4/gdtools/man/register_gfont.Rd | 6 gdtools-0.4.4/gdtools/man/register_liberationmono.Rd |only gdtools-0.4.4/gdtools/man/register_liberationsans.Rd | 8 gdtools-0.4.4/gdtools/man/register_liberationserif.Rd |only gdtools-0.4.4/gdtools/man/set_dummy_conf.Rd | 4 gdtools-0.4.4/gdtools/man/strings_sizes.Rd |only gdtools-0.4.4/gdtools/src/RcppExports.cpp | 260 ------------- gdtools-0.4.4/gdtools/src/font_metrics.cpp | 21 - gdtools-0.4.4/gdtools/tests/testthat/test-str_metrics.R | 3 36 files changed, 149 insertions(+), 523 deletions(-)
Title: A Graphical User Interface for Dexter
Description: Classical Test and Item analysis,
Item Response analysis and data management for educational and psychological tests.
Author: Jesse Koops [aut, cre],
Eva de Schipper [aut],
Ivailo Partchev [aut, ctb],
Gunter Maris [aut, ctb],
Timo Bechger [aut, ctb],
Gareth Watts [cph] ,
Hakim El Hattab [cph]
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dextergui versions 1.0.0 dated 2025-06-03 and 1.0.1 dated 2025-10-06
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 2 +- NEWS.md | 5 +++++ R/abplot.R | 35 +++++++++++++++++++++++++---------- R/example.R | 7 ++++++- R/gui.R | 4 ++-- R/misc.R | 31 +++---------------------------- R/serve.R | 41 +++++++++++++++++++++++++++++++---------- R/tags.R | 15 +++++++++++++++ build/vignette.rds |binary inst/doc/dextergui.Rmd | 4 ++-- inst/doc/dextergui.html | 31 ++++++++++++++++++++----------- inst/extdata/manual.html | 29 ++++++++++++++++++----------- inst/www/shinydexter.js | 27 ++++++++++++++++++++++++++- man/dextergui.Rd | 4 ++-- vignettes/dextergui.Rmd | 4 ++-- vignettes/img/abplot.PNG |binary 18 files changed, 180 insertions(+), 103 deletions(-)
Title: Forecasting Mortality, Fertility, Migration and Population Data
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob Hyndman [aut, cre, cph] ,
Heather Booth [ctb] ,
Leonie Tickle [ctb] ,
John Maindonald [ctb],
Simon Wood [ctb],
R Core Team [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between demography versions 2.0 dated 2023-02-08 and 2.0.1 dated 2025-10-06
DESCRIPTION | 17 MD5 | 90 ++-- NEWS.md | 34 - R/as.data.frame.demogdata.R | 18 R/attach.R | 5 R/coherent.R | 187 ++++---- R/demogdata.R | 644 ++++++++++++++---------------- R/demography.R | 39 - R/fdm.R | 804 +++++++++++++++++++------------------ R/fertility.R | 89 ++-- R/hmd.R | 28 - R/lca.R | 910 +++++++++++++++++++++--------------------- R/lifetable.R | 938 ++++++++++++++++++++++---------------------- R/monotonic.R | 325 +++++++-------- R/netmigration.R | 148 +++--- R/robust.R | 459 ++++++++++----------- R/simulate.R | 126 ++--- R/smooth.R | 670 ++++++++++++++++--------------- R/update.R | 108 ++--- man/cm.spline.Rd | 4 man/coherentfdm.Rd | 4 man/combine.demogdata.Rd | 6 man/compare.demogdata.Rd | 18 man/demography-package.Rd | 11 man/extract.ages.Rd | 2 man/extract.years.Rd | 2 man/forecast.fdm.Rd | 4 man/forecast.fdmpr.Rd | 4 man/forecast.lca.Rd | 4 man/lca.Rd | 12 man/life.expectancy.Rd | 15 man/lifetable.Rd | 6 man/mean.demogdata.Rd | 4 man/models.Rd | 6 man/plot.errorfdm.Rd | 4 man/plot.fmforecast.Rd | 4 man/plot.lifetable.Rd | 2 man/pop.sim.Rd | 9 man/read.demogdata.Rd | 2 man/residuals.fdm.Rd | 6 man/sex.ratio.Rd | 2 man/simulate.fmforecast.Rd | 11 man/smooth.demogdata.Rd | 7 man/summary.fdm.Rd | 2 man/tfr.Rd | 2 man/update.Rd | 18 46 files changed, 2940 insertions(+), 2870 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-02 2.0.1
2025-09-20 2.0.0
2024-04-06 1.2.0
2024-02-15 1.1.0
2023-05-05 0.3.0
2022-11-01 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-02 2.0.1
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut] ,
Om Prakash Bhandari [aut],
Andreas Petutschnig [ctb] ,
Sven Bergtold [ctb, cre],
Zivan Karaman [ctb] ,
MAPME-Initiative [cph, fnd]
Maintainer: Sven Bergtold <sven.bergtold@gmail.com>
Diff between mapme.biodiversity versions 0.9.4 dated 2025-04-28 and 0.9.5 dated 2025-10-06
DESCRIPTION | 17 MD5 | 150 - NAMESPACE | 1 NEWS.md | 23 R/calc_burned_area.R | 2 R/calc_fatalities_acled.R | 2 R/calc_indicators.R | 12 R/calc_treecover_area.R | 188 + R/calc_treecover_area_and_emissions.R | 8 R/calc_treecoverloss_emissions.R | 6 R/get_acled.R | 2 R/get_biodiversity_intactness_index.R | 2 R/get_carbon.R | 2 R/get_chelsa.R | 4 R/get_esalandcover.R | 115 - R/get_gfw_emissions.R | 2 R/get_gfw_lossyear.R | 4 R/get_gfw_treecover.R | 7 R/get_gsw.R | 10 R/get_hfp.R | 2 R/get_ipbes_biomes.R | 2 R/get_mcd64A1.R | 2 R/get_nasa_srtm.R | 2 R/get_resources.R | 48 R/get_soilgrids.R | 4 R/get_teow.R | 44 R/get_ucdp_ged.R | 2 R/portfolio.R | 2 R/register.R | 15 R/spatial-utils.R | 37 R/utils.R | 19 README.md | 162 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/quickstart.R | 226 +- inst/doc/quickstart.html | 1325 ++++++------- inst/doc/terminology.R | 28 inst/doc/terminology.html | 660 +++--- man/acled.Rd | 2 man/biodiversity_intactness_index_resource.Rd | 2 man/burned_area.Rd | 2 man/carbon_resources.Rd | 2 man/chelsa.Rd | 4 man/esalandcover.Rd | 17 man/fatalities_acled.Rd | 2 man/gfw_emissions.Rd | 2 man/gfw_lossyear.Rd | 4 man/gfw_treecover.Rd | 4 man/global_surface_water_change.Rd | 2 man/global_surface_water_occurrence.Rd | 2 man/global_surface_water_recurrence.Rd | 2 man/global_surface_water_seasonality.Rd | 2 man/global_surface_water_transitions.Rd | 2 man/humanfootprint_resource.Rd | 2 man/ipbes_biomes.Rd | 2 man/mcd64a1.Rd | 2 man/nasa_srtm.Rd | 2 man/soilgrids.Rd | 4 man/teow.Rd | 11 man/treecover_area.Rd | 12 man/treecover_area_and_emissions.Rd | 6 man/treecoverloss_emissions.Rd | 6 tests/testthat/_snaps/calc_treecover_area.md | 2 tests/testthat/_snaps/calc_treecover_area_and_emissions.md | 4 tests/testthat/test-calc_biome.R | 2 tests/testthat/test-calc_carbon.R | 6 tests/testthat/test-calc_deforestation_drivers.R | 1 tests/testthat/test-calc_ecoregion.R | 2 tests/testthat/test-calc_indicator.R | 4 tests/testthat/test-calc_treecover_area.R | 4 tests/testthat/test-get_carbon.R | 1 tests/testthat/test-get_gfw_lossyear.R | 2 tests/testthat/test-get_gfw_treecover.R | 2 tests/testthat/test-get_teow.R | 2 tests/testthat/test-ipbes.R | 1 tests/testthat/test-spatial-utils.R | 8 76 files changed, 1781 insertions(+), 1495 deletions(-)
More information about mapme.biodiversity at CRAN
Permanent link
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/solutions/technologies/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.20 dated 2025-09-02 and 0.4.21 dated 2025-10-06
xpose-0.4.20/xpose/tests/testthat/helper-test_that_for_all.R |only xpose-0.4.21/xpose/DESCRIPTION | 8 xpose-0.4.21/xpose/MD5 | 31 - xpose-0.4.21/xpose/NEWS.md | 3 xpose-0.4.21/xpose/README.md | 4 xpose-0.4.21/xpose/inst/doc/access_xpdb_data.html | 7 xpose-0.4.21/xpose/inst/doc/customize_plots.html | 7 xpose-0.4.21/xpose/inst/doc/import_model_outputs.html | 7 xpose-0.4.21/xpose/inst/doc/introduction.html | 7 xpose-0.4.21/xpose/inst/doc/multiple_pages.html | 7 xpose-0.4.21/xpose/inst/doc/vpc.html | 7 xpose-0.4.21/xpose/man/figures/readme_example_figure_1-1.png |binary xpose-0.4.21/xpose/man/figures/readme_example_figure_2-1.png |binary xpose-0.4.21/xpose/man/figures/readme_example_figure_3-1.png |binary xpose-0.4.21/xpose/man/figures/readme_example_figure_4-1.png |binary xpose-0.4.21/xpose/man/figures/readme_example_figure_5-1.png |binary xpose-0.4.21/xpose/tests/testthat/test-plots.R | 173 ++++++++--- 17 files changed, 174 insertions(+), 87 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling
techniques or better understand data generating processes. The user
specifies a set of relationships between covariates, and generates
data based on these specifications. The final data sets can represent
data from randomized control trials, repeated measure (longitudinal)
designs, and cluster randomized trials. Missingness can be generated
using various mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre] ,
Jacob Wujciak-Jens [aut]
Maintainer: Keith Goldfeld <keith.goldfeld@nyulangone.org>
Diff between simstudy versions 0.8.1 dated 2024-07-29 and 0.9.0 dated 2025-10-06
simstudy-0.8.1/simstudy/R/int_rmult.R |only simstudy-0.9.0/simstudy/DESCRIPTION | 25 simstudy-0.9.0/simstudy/MD5 | 99 simstudy-0.9.0/simstudy/NAMESPACE | 4 simstudy-0.9.0/simstudy/R/add_correlated_data.R | 11 simstudy-0.9.0/simstudy/R/add_data.R | 30 simstudy-0.9.0/simstudy/R/define_data.R | 28 simstudy-0.9.0/simstudy/R/generate_data.R | 30 simstudy-0.9.0/simstudy/R/generate_dist.R | 24 simstudy-0.9.0/simstudy/R/group_data.R | 6 simstudy-0.9.0/simstudy/R/simstudy-package.R | 5 simstudy-0.9.0/simstudy/R/utility.R | 198 + simstudy-0.9.0/simstudy/R/zzz.R | 4 simstudy-0.9.0/simstudy/build/vignette.rds |binary simstudy-0.9.0/simstudy/inst/doc/clustered.html | 5 simstudy-0.9.0/simstudy/inst/doc/corelationmat.R | 66 simstudy-0.9.0/simstudy/inst/doc/corelationmat.html | 5 simstudy-0.9.0/simstudy/inst/doc/correlated.html | 3 simstudy-0.9.0/simstudy/inst/doc/customdist.html | 7 simstudy-0.9.0/simstudy/inst/doc/double_dot_extension.html | 7 simstudy-0.9.0/simstudy/inst/doc/framework.R |only simstudy-0.9.0/simstudy/inst/doc/framework.Rmd |only simstudy-0.9.0/simstudy/inst/doc/framework.html |only simstudy-0.9.0/simstudy/inst/doc/logisticCoefs.html | 3 simstudy-0.9.0/simstudy/inst/doc/longitudinal.html | 7 simstudy-0.9.0/simstudy/inst/doc/missing.html | 7 simstudy-0.9.0/simstudy/inst/doc/ordinal.html | 135 simstudy-0.9.0/simstudy/inst/doc/simstudy.html | 5 simstudy-0.9.0/simstudy/inst/doc/spline.html | 17 simstudy-0.9.0/simstudy/inst/doc/survival.html | 562 +-- simstudy-0.9.0/simstudy/inst/doc/treat_and_exposure.html | 91 simstudy-0.9.0/simstudy/man/addDataDensity.Rd | 15 simstudy-0.9.0/simstudy/man/genDataDensity.Rd | 28 simstudy-0.9.0/simstudy/man/grouped.Rd |only simstudy-0.9.0/simstudy/man/mergeData.Rd | 17 simstudy-0.9.0/simstudy/man/scenario_list.Rd |only simstudy-0.9.0/simstudy/tests/testthat.R | 32 simstudy-0.9.0/simstudy/tests/testthat/helper-gen_def.R | 12 simstudy-0.9.0/simstudy/tests/testthat/setup-minimal.R |only simstudy-0.9.0/simstudy/tests/testthat/test-actual-distributions.R | 4 simstudy-0.9.0/simstudy/tests/testthat/test-add_data.R | 257 + simstudy-0.9.0/simstudy/tests/testthat/test-asserts.R | 185 - simstudy-0.9.0/simstudy/tests/testthat/test-conditions.R | 12 simstudy-0.9.0/simstudy/tests/testthat/test-define_data.R | 1043 ++++++ simstudy-0.9.0/simstudy/tests/testthat/test-generate_correlated_data.R | 1591 +++++++++- simstudy-0.9.0/simstudy/tests/testthat/test-generate_data.R | 71 simstudy-0.9.0/simstudy/tests/testthat/test-generate_dist.R | 679 ++++ simstudy-0.9.0/simstudy/tests/testthat/test-glue.R | 26 simstudy-0.9.0/simstudy/tests/testthat/test-group_data.R | 743 ++++ simstudy-0.9.0/simstudy/tests/testthat/test-internal_utility.R | 179 - simstudy-0.9.0/simstudy/tests/testthat/test-missing_data.R | 132 simstudy-0.9.0/simstudy/tests/testthat/test-survival.R | 110 simstudy-0.9.0/simstudy/tests/testthat/test-utility.R | 1485 ++++++++- simstudy-0.9.0/simstudy/vignettes/data |only simstudy-0.9.0/simstudy/vignettes/framework.Rmd |only 55 files changed, 7000 insertions(+), 1005 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided
to embed 'DrawingML' graphics into 'Microsoft PowerPoint'
presentations and 'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
ArData [cph],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.3.5 dated 2025-03-27 and 0.4.0 dated 2025-10-06
DESCRIPTION | 48 +++++------- MD5 | 44 +++++------ NAMESPACE | 1 NEWS.md | 4 + R/defunct.R | 2 R/dml_pptx.R | 38 ++++++--- R/dml_xlsx.R | 38 ++++++--- R/fonts.R | 6 + R/ph_with_vg.R | 37 +++++++-- R/xl_add_vg.R | 30 ++++++- src/ooxml_dev.h | 11 +- src/text.cpp | 144 ++++++++++++++++++++----------------- tests/testthat/test-bg.R | 37 ++++++--- tests/testthat/test-dml-editable.R | 18 ++-- tests/testthat/test-officer.R | 43 ++++++++--- tests/testthat/test-pptx-lines.R | 110 ++++++++++++++++++++-------- tests/testthat/test-pptx-raster.R | 42 +++++----- tests/testthat/test-pptx-text.R | 102 +++++++++++++++++--------- tests/testthat/test-pptx-xfrm.R | 109 ++++++++++++++++------------ tests/testthat/test-xlsx-lines.R | 111 ++++++++++++++++++++-------- tests/testthat/test-xlsx-raster.R | 42 +++++----- tests/testthat/test-xlsx-text.R | 102 +++++++++++++++++--------- tests/testthat/test-xlsx-xfrm.R | 125 +++++++++++++++++++++----------- 23 files changed, 797 insertions(+), 447 deletions(-)
Title: Classification of Sparseness in 2-by-2 Categorical Data
Description: Provides functions for classifying sparseness in 2 x 2 categorical data where one or more cells have zero counts. The classification uses three widely applied summary measures: Risk Difference (RD), Relative Risk (RR), and Odds Ratio (OR). Helps in selecting suitable continuity corrections for zero cells in multi-centre or meta-analysis studies. Also supports sensitivity analysis and can detect phenomena such as Simpson's paradox. The methodology is based on Subbiah and Srinivasan (2008) <doi:10.1016/j.spl.2008.06.023>.
Author: Subbiah M [aut, cre]
Maintainer: Subbiah M <sisufive@gmail.com>
This is a re-admission after prior archival of version 1.0 dated 2012-12-19
Diff between nose versions 1.0 dated 2012-12-19 and 1.0.5 dated 2025-10-06
nose-1.0.5/nose/DESCRIPTION | 34 ++-- nose-1.0.5/nose/MD5 | 15 +- nose-1.0.5/nose/R/nose.or.R | 265 +++++++++++++++++++++----------------- nose-1.0.5/nose/R/nose.rd.R |only nose-1.0.5/nose/R/nose.rr.R | 24 +++ nose-1.0.5/nose/man/nose.or.Rd | 75 +++++----- nose-1.0.5/nose/man/nose.rd.Rd |only nose-1.0.5/nose/man/nose.rr.Rd | 72 +++++----- nose-1.0/nose/R/nose.rf.R |only nose-1.0/nose/man/nose-package.Rd |only nose-1.0/nose/man/nose.rf.Rd |only 11 files changed, 269 insertions(+), 216 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 0.12.2 dated 2025-07-31 and 1.0.0 dated 2025-10-06
ggformula-0.12.2/ggformula/inst/doc/ggformula.Rmd |only ggformula-0.12.2/ggformula/vignettes/ggformula.Rmd |only ggformula-1.0.0/ggformula/DESCRIPTION | 23 ggformula-1.0.0/ggformula/MD5 | 267 ggformula-1.0.0/ggformula/NAMESPACE | 51 ggformula-1.0.0/ggformula/NEWS.md | 5 ggformula-1.0.0/ggformula/R/gf_aux.R | 22 ggformula-1.0.0/ggformula/R/gf_dist.R | 329 ggformula-1.0.0/ggformula/R/gf_function2d.R | 120 ggformula-1.0.0/ggformula/R/gf_functions.R | 857 ggformula-1.0.0/ggformula/R/gf_plot.R | 1 ggformula-1.0.0/ggformula/R/ggiraph-documentation-with-examples.R |only ggformula-1.0.0/ggformula/R/ggiraph-themes.R |only ggformula-1.0.0/ggformula/R/ggiraph.R |only ggformula-1.0.0/ggformula/R/ggridges.R | 116 ggformula-1.0.0/ggformula/R/ggstance-deprecated.R | 44 ggformula-1.0.0/ggformula/R/ggstrings.R | 169 ggformula-1.0.0/ggformula/R/layer_factory.R | 868 ggformula-1.0.0/ggformula/R/newplots.R | 496 ggformula-1.0.0/ggformula/R/reexports.R | 2 ggformula-1.0.0/ggformula/R/relabel.R | 3 ggformula-1.0.0/ggformula/R/scales.R | 1 ggformula-1.0.0/ggformula/R/utils.R | 86 ggformula-1.0.0/ggformula/R/vdiffr.R | 6 ggformula-1.0.0/ggformula/R/zzz.R | 3 ggformula-1.0.0/ggformula/build/vignette.rds |binary ggformula-1.0.0/ggformula/inst/doc/ggformula.R | 66 ggformula-1.0.0/ggformula/inst/doc/ggformula.html | 543 ggformula-1.0.0/ggformula/inst/doc/ggformula.qmd |only ggformula-1.0.0/ggformula/inst/doc/interactive-graphics.R |only ggformula-1.0.0/ggformula/inst/doc/interactive-graphics.html |only ggformula-1.0.0/ggformula/inst/doc/interactive-graphics.qmd |only ggformula-1.0.0/ggformula/inst/logo.png |only ggformula-1.0.0/ggformula/inst/tutorials/introduction/dependencies.R | 2 ggformula-1.0.0/ggformula/man/figures |only ggformula-1.0.0/ggformula/man/geom_lm.Rd | 6 ggformula-1.0.0/ggformula/man/gf_abline_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_area.Rd | 6 ggformula-1.0.0/ggformula/man/gf_area_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_bar.Rd | 4 ggformula-1.0.0/ggformula/man/gf_bar_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_bin2d.Rd | 28 ggformula-1.0.0/ggformula/man/gf_bin2d_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_bin_2d_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_boxplot.Rd | 12 ggformula-1.0.0/ggformula/man/gf_boxplot_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_col_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_contour.Rd | 8 ggformula-1.0.0/ggformula/man/gf_contour_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_count_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_crossbar.Rd | 14 ggformula-1.0.0/ggformula/man/gf_crossbar_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_curve.Rd | 6 ggformula-1.0.0/ggformula/man/gf_curve_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_density.Rd | 4 ggformula-1.0.0/ggformula/man/gf_density2d_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_density_2d.Rd | 4 ggformula-1.0.0/ggformula/man/gf_density_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_dotplot_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_ecdf.Rd | 6 ggformula-1.0.0/ggformula/man/gf_errorbar.Rd | 6 ggformula-1.0.0/ggformula/man/gf_errorbar_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_facet_grid.Rd | 3 ggformula-1.0.0/ggformula/man/gf_freqpoly.Rd | 11 ggformula-1.0.0/ggformula/man/gf_freqpoly_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_girafe.Rd |only ggformula-1.0.0/ggformula/man/gf_hex.Rd | 20 ggformula-1.0.0/ggformula/man/gf_hex_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_histogram.Rd | 11 ggformula-1.0.0/ggformula/man/gf_histogram_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_hline_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_jitter_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_label_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_labeller_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_line_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_linerange.Rd | 6 ggformula-1.0.0/ggformula/man/gf_linerange_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_lines.Rd | 19 ggformula-1.0.0/ggformula/man/gf_path_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_point_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_pointrange_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_polygon_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_qq.Rd | 4 ggformula-1.0.0/ggformula/man/gf_quantile.Rd | 4 ggformula-1.0.0/ggformula/man/gf_quantile_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_raster_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_rect_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_ribbon.Rd | 6 ggformula-1.0.0/ggformula/man/gf_ribbon_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_rug.Rd | 6 ggformula-1.0.0/ggformula/man/gf_segment.Rd | 6 ggformula-1.0.0/ggformula/man/gf_sf.Rd | 4 ggformula-1.0.0/ggformula/man/gf_sf_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_smooth.Rd | 4 ggformula-1.0.0/ggformula/man/gf_smooth_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_spoke.Rd | 6 ggformula-1.0.0/ggformula/man/gf_spoke_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_step.Rd | 6 ggformula-1.0.0/ggformula/man/gf_step_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_text.Rd | 12 ggformula-1.0.0/ggformula/man/gf_text_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_tile.Rd | 11 ggformula-1.0.0/ggformula/man/gf_tile_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_violin.Rd | 8 ggformula-1.0.0/ggformula/man/gf_violin_interactive.Rd |only ggformula-1.0.0/ggformula/man/gf_vline_interactive.Rd |only ggformula-1.0.0/ggformula/man/ggformula.Rd | 2 ggformula-1.0.0/ggformula/man/ggridges.Rd | 4 ggformula-1.0.0/ggformula/man/interactive_facets.Rd |only ggformula-1.0.0/ggformula/man/interactive_layer_factory.Rd |only ggformula-1.0.0/ggformula/man/layer_factory.Rd | 19 ggformula-1.0.0/ggformula/man/theme_facets_interactive.Rd |only ggformula-1.0.0/ggformula/tests/testthat/_snaps/annotate/label-with-formatting.svg | 8 ggformula-1.0.0/ggformula/tests/testthat/_snaps/annotate/label.svg | 4 ggformula-1.0.0/ggformula/tests/testthat/_snaps/annotate/multiple-text.svg | 8 ggformula-1.0.0/ggformula/tests/testthat/_snaps/annotate/single-text.svg | 2 ggformula-1.0.0/ggformula/tests/testthat/_snaps/labeling/using-a-list.svg | 126 ggformula-1.0.0/ggformula/tests/testthat/_snaps/labeling/using.svg | 126 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/discrete-breaks-2-0.svg | 126 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/discrete-breaks-default.svg | 190 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-abline6.svg | 2 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-abline7.svg | 6 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-bin2d1.svg | 225 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-boxplot1.svg | 6 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-boxplot2.svg | 4 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-boxplot3.svg | 970 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-crossbar1.svg | 892 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-dhistogram1.svg | 80 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-dhistogramh1.svg | 78 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-dhistogramh2.svg | 68 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-dist3.svg | 91 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-errorbar1.svg | 892 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fitdistr2.svg | 86 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-freqpoly1.svg | 34 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun1.svg | 65 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d1.svg | 5000 ++-- ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d2.svg | 5000 ++-- ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d3.svg | 5000 ++-- ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d4.svg | 5000 ++-- ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-fun2d5.svg | 65 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-histogram-with-facets.svg | 76 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-histogram1.svg | 78 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-label1.svg | 156 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-label2.svg | 164 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-pointrange2.svg | 892 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-1.svg | 424 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-4.svg | 1024 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-5.svg | 1024 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-6.svg | 506 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-7.svg | 714 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-8.svg | 714 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rug-on-y-only-but-with-jitter.svg | 744 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rugx-with-jitter.svg | 744 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rugx-without-jitter.svg | 746 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-rugy.svg | 744 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-text1.svg | 78 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-text2.svg | 82 ggformula-1.0.0/ggformula/tests/testthat/_snaps/layer-factory/gf-tile1.svg |11250 +++++----- ggformula-1.0.0/ggformula/tests/testthat/test-annotate.R | 151 ggformula-1.0.0/ggformula/tests/testthat/test-labeling.R | 102 ggformula-1.0.0/ggformula/tests/testthat/test-layer-factory.R | 1942 - ggformula-1.0.0/ggformula/vignettes/ggformula.qmd |only ggformula-1.0.0/ggformula/vignettes/interactive-graphics.qmd |only 163 files changed, 25529 insertions(+), 25336 deletions(-)