Title: Truncated Multivariate Normal and t Distribution Simulation
Description: Simulation of random vectors from truncated multivariate normal
and t distributions based on the algorithms proposed by Yifang Li and Sujit K. Ghosh (2015) <doi:10.1080/15598608.2014.996690>.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between tmvtnsim versions 0.1.3 dated 2022-10-09 and 0.1.4 dated 2025-10-07
DESCRIPTION | 14 ++++++++------ MD5 | 12 ++++++------ R/tmvtnsim-package.R | 2 -- build/partial.rdb |binary man/tmvtnsim-package.Rd | 1 - src/Makevars | 2 -- src/Makevars.win | 2 -- 7 files changed, 14 insertions(+), 19 deletions(-)
Title: Optimal Dose Escalation Using Deep Reinforcement Learning
Description: An implementation to compute an optimal dose escalation rule
using deep reinforcement learning in phase I oncology trials
(Matsuura et al. (2023) <doi:10.1080/10543406.2023.2170402>).
The dose escalation rule can directly optimize the percentages of correct
selection (PCS) of the maximum tolerated dose (MTD).
Author: Kentaro Matsuura [aut, cre, cph]
Maintainer: Kentaro Matsuura <matsuurakentaro55@gmail.com>
Diff between RLescalation versions 1.0.2 dated 2025-02-07 and 1.0.3 dated 2025-10-07
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ R/compute_rl_scenarios.R | 1 + R/escalation_rule.R | 4 +++- build/vignette.rds |binary inst/doc/RLescalation.Rmd | 2 +- inst/doc/RLescalation.html | 7 +++---- vignettes/RLescalation.Rmd | 2 +- 9 files changed, 25 insertions(+), 21 deletions(-)
Title: Run Once and Save Result
Description: Package 'runonce' helps automating the saving of long-running code
to help running the same code multiple times. If you run some long-running
code once, it saves the result in a file on disk. Then, if the result
already exists, i.e. if the code has already been run and its output has
already been saved, it just reads the result from the stored file instead
of running the code again.
Author: Florian Prive [aut, cre]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between runonce versions 0.3.2 dated 2025-07-30 and 0.3.3 dated 2025-10-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/download-file.R | 5 +++-- man/download_file.Rd | 11 ++++++----- 4 files changed, 16 insertions(+), 14 deletions(-)
Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the
editorial guidelines of the Institute for Applied Economic
Research (Ipea).
Author: Pedro Ferreira [aut, cre],
Pedro Jorge [aut],
Daniel Lima [aut],
Gustavo Coelho [aut],
Rafael H. M. Pereira [aut],
Lucas Mation [aut],
Fabio Vaz [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>
Diff between ipeaplot versions 0.4.1 dated 2025-02-26 and 0.5.0 dated 2025-10-07
ipeaplot-0.4.1/ipeaplot/R/save_eps.R |only ipeaplot-0.4.1/ipeaplot/R/save_pdf.R |only ipeaplot-0.4.1/ipeaplot/man/save_eps.Rd |only ipeaplot-0.4.1/ipeaplot/man/save_pdf.Rd |only ipeaplot-0.5.0/ipeaplot/DESCRIPTION | 10 ipeaplot-0.5.0/ipeaplot/MD5 | 30 ipeaplot-0.5.0/ipeaplot/NAMESPACE | 5 ipeaplot-0.5.0/ipeaplot/NEWS.md | 41 ipeaplot-0.5.0/ipeaplot/R/save_ipeaplot.R |only ipeaplot-0.5.0/ipeaplot/README.md | 19 ipeaplot-0.5.0/ipeaplot/build/vignette.rds |binary ipeaplot-0.5.0/ipeaplot/inst/doc/cookbook.R | 598 ++++++------- ipeaplot-0.5.0/ipeaplot/inst/doc/cookbook.html | 4 ipeaplot-0.5.0/ipeaplot/inst/doc/intro_ipeaplot.R | 177 ++- ipeaplot-0.5.0/ipeaplot/inst/doc/intro_ipeaplot.Rmd | 63 + ipeaplot-0.5.0/ipeaplot/inst/doc/intro_ipeaplot.html | 108 +- ipeaplot-0.5.0/ipeaplot/man/save_ipeaplot.Rd |only ipeaplot-0.5.0/ipeaplot/tests/tests_pedro_alves/exemplos.R | 42 ipeaplot-0.5.0/ipeaplot/vignettes/intro_ipeaplot.Rmd | 63 + 19 files changed, 689 insertions(+), 471 deletions(-)
Title: Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann [aut, cre] ,
Jochen Fruend [aut] ,
Bernd Gruber [aut] ,
Tobias Bauer [ctb] ,
Stephen Beckett [ctb] ,
Mariano Devoto [ctb] ,
Gabriel M.F. Felix [ctb] ,
Jose M. Iriondo [ctb] ,
Tore Opsahl [ctb] ,
Rafael B.P. Pinheiro [ctb] ,
Rouven [...truncated...]
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>
Diff between bipartite versions 2.22 dated 2025-09-08 and 2.23 dated 2025-10-07
bipartite-2.22/bipartite/src/bmn5.cc |only bipartite-2.22/bipartite/vignettes/Intro2bipartite-concordance.tex |only bipartite-2.22/bipartite/vignettes/figures/motten1982_plotweb_old.pdf |only bipartite-2.23/bipartite/DESCRIPTION | 8 - bipartite-2.23/bipartite/MD5 | 27 ++--- bipartite-2.23/bipartite/R/plotweb.R | 28 +++++ bipartite-2.23/bipartite/inst/doc/Intro2bipartite.R | 54 ++++------ bipartite-2.23/bipartite/inst/doc/Intro2bipartite.Rnw | 20 +-- bipartite-2.23/bipartite/inst/doc/Intro2bipartite.pdf |binary bipartite-2.23/bipartite/inst/doc/PlottingWithBipartite.html | 4 bipartite-2.23/bipartite/inst/extdata |only bipartite-2.23/bipartite/man/bipartite-package.Rd | 7 + bipartite-2.23/bipartite/man/plotweb.Rd | 2 bipartite-2.23/bipartite/vignettes/Intro2bipartite.Rnw | 20 +-- bipartite-2.23/bipartite/vignettes/figures/motten1982_plotweb.pdf |binary bipartite-2.23/bipartite/vignettes/figures/twocolumn-betweenPlot-1.pdf |binary 16 files changed, 95 insertions(+), 75 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via 'modsem' it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3."
Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] ,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.12 dated 2025-08-27 and 1.0.13 dated 2025-10-07
modsem-1.0.12/modsem/tests/testthat/test_higher_order.R |only modsem-1.0.13/modsem/DESCRIPTION | 6 modsem-1.0.13/modsem/MD5 | 113 +- modsem-1.0.13/modsem/NAMESPACE | 1 modsem-1.0.13/modsem/R/bootstrap.R | 54 - modsem-1.0.13/modsem/R/check_model_da.R | 63 + modsem-1.0.13/modsem/R/construct_matrices_da.R | 41 modsem-1.0.13/modsem/R/generics_lavaan.R | 4 modsem-1.0.13/modsem/R/generics_modsem_da.R | 16 modsem-1.0.13/modsem/R/generics_modsem_pi.R | 4 modsem-1.0.13/modsem/R/labelled_params_da.R | 21 modsem-1.0.13/modsem/R/lavaan_labels.R | 25 modsem-1.0.13/modsem/R/model_da.R | 49 - modsem-1.0.13/modsem/R/model_parameters_da.R | 4 modsem-1.0.13/modsem/R/modsem_da.R | 26 modsem-1.0.13/modsem/R/modsem_mplus.R | 182 +++ modsem-1.0.13/modsem/R/optimize_da.R | 189 +++ modsem-1.0.13/modsem/R/parser.R | 9 modsem-1.0.13/modsem/R/plot_interaction.R | 237 +++- modsem-1.0.13/modsem/R/reliablity_single_item.R | 190 +++ modsem-1.0.13/modsem/R/scale_correction_ordered.R | 486 +++++++++- modsem-1.0.13/modsem/R/simple_slopes.R | 96 + modsem-1.0.13/modsem/R/standardized_solution.R | 40 modsem-1.0.13/modsem/R/tokenizer.R | 3 modsem-1.0.13/modsem/R/twostep.R | 2 modsem-1.0.13/modsem/R/utils.R | 106 +- modsem-1.0.13/modsem/R/utils_da.R | 195 +++- modsem-1.0.13/modsem/R/utils_pi.R | 7 modsem-1.0.13/modsem/README.md | 11 modsem-1.0.13/modsem/inst/doc/customizing.html | 2 modsem-1.0.13/modsem/inst/doc/higher_order_interactions.R | 58 - modsem-1.0.13/modsem/inst/doc/higher_order_interactions.Rmd | 102 +- modsem-1.0.13/modsem/inst/doc/higher_order_interactions.html | 127 +- modsem-1.0.13/modsem/inst/doc/observed_lms_qml.html | 38 modsem-1.0.13/modsem/inst/doc/plot_interactions.R | 85 + modsem-1.0.13/modsem/inst/doc/plot_interactions.Rmd | 105 ++ modsem-1.0.13/modsem/inst/doc/plot_interactions.html | 120 ++ modsem-1.0.13/modsem/man/bootstrap_modsem.Rd | 5 modsem-1.0.13/modsem/man/modsem_da.Rd | 18 modsem-1.0.13/modsem/man/modsem_mplus.Rd | 6 modsem-1.0.13/modsem/man/parameter_estimates.Rd | 10 modsem-1.0.13/modsem/man/plot_interaction.Rd | 22 modsem-1.0.13/modsem/man/plot_jn.Rd | 6 modsem-1.0.13/modsem/man/plot_surface.Rd | 65 + modsem-1.0.13/modsem/man/simple_slopes.Rd | 12 modsem-1.0.13/modsem/src/Makevars | 5 modsem-1.0.13/modsem/src/equations_lms.cpp | 268 +++-- modsem-1.0.13/modsem/tests/testthat/test_bootstrap.R | 3 modsem-1.0.13/modsem/tests/testthat/test_higher_order_da.R |only modsem-1.0.13/modsem/tests/testthat/test_higher_order_pi.R |only modsem-1.0.13/modsem/tests/testthat/test_linear_da.R | 7 modsem-1.0.13/modsem/tests/testthat/test_lms.R | 2 modsem-1.0.13/modsem/tests/testthat/test_mplus.R | 31 modsem-1.0.13/modsem/tests/testthat/test_ordered_da.R | 3 modsem-1.0.13/modsem/tests/testthat/test_sam.R | 29 modsem-1.0.13/modsem/tests/testthat/test_simple_slopes.R | 59 + modsem-1.0.13/modsem/tests/testthat/test_zero_variance_indicator_lms.R | 2 modsem-1.0.13/modsem/vignettes/higher_order_interactions.Rmd | 102 +- modsem-1.0.13/modsem/vignettes/plot_interactions.Rmd | 105 ++ 59 files changed, 2920 insertions(+), 657 deletions(-)
Title: Hierarchical Partitioning of Adjusted R2 and Explained Deviance
for Generalized Additive Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor towards adjusted R2 and explained deviance for generalized additive models based on output of 'gam()' and 'bam()' in 'mgcv' package, applying the algorithm in this paper: Lai(2024) <doi:10.1016/j.pld.2024.06.002>.
Author: Jiangshan Lai [aut, cre] ,
Jing Tang [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between gam.hp versions 0.0-3 dated 2024-12-15 and 0.0-4 dated 2025-10-07
DESCRIPTION | 13 - MD5 | 6 R/gam.hp.r | 746 ++++++++++++++++++++++++++++++---------------------------- man/gam.hp.Rd | 75 ++++- 4 files changed, 448 insertions(+), 392 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models. See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Bolos [aut, cre],
Vicente Coll-Serrano [aut],
Rafael Benitez Suarez [aut]
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.5 dated 2025-06-13 and 1.5.1 dated 2025-10-07
DESCRIPTION | 20 - MD5 | 192 ++++++++--------- R/bootstrap_basic.R | 9 R/cross_efficiency.R | 6 R/cross_efficiency_fuzzy.R | 4 R/eff_dmus.R | 2 R/efficiencies.R | 43 ++- R/efficiencies.dea.R | 150 ++++++------- R/efficiencies.dea_fuzzy.R | 439 ++++++++++++++++++++-------------------- R/extreme_efficient.R | 2 R/is.dea.R | 3 R/is.dea_fuzzy.R | 2 R/is.deadata.R | 3 R/is.deadata_fuzzy.R | 3 R/is.friends.R | 2 R/lambdas.R | 2 R/make_deadata.R | 2 R/make_deadata_fuzzy.R | 3 R/make_malmquist.R | 2 R/malmquist_index.R | 4 R/maximal_friends.R | 2 R/model_additive.R | 9 R/model_addmin.R | 9 R/model_addsupereff.R | 8 R/model_basic.R | 8 R/model_deaps.R | 8 R/model_dir.R | 7 R/model_fdh.R | 6 R/model_lgo.R | 21 + R/model_multiplier.R | 7 R/model_nonradial.R | 8 R/model_profit.R | 5 R/model_qgo.R | 23 +- R/model_rdm.R | 8 R/model_sbmeff.R | 9 R/model_sbmsupereff.R | 7 R/model_supereff.R | 7 R/modelfuzzy_guotanaka.R | 7 R/modelfuzzy_kaoliu.R | 21 + R/modelfuzzy_possibilistic.R | 7 R/multipliers.R | 2 R/plot.dea.R | 2 R/plot.dea_fuzzy.R | 2 R/read_data.R | 2 R/read_data_fuzzy.R | 3 R/read_malmquist.R | 2 R/references.R | 4 R/rts.R | 7 R/slacks.R | 2 R/summary.dea.R | 6 R/summary.dea_fuzzy.R | 6 R/targets.R | 83 +++++-- R/undesirable_basic.R | 2 man/bootstrap_basic.Rd | 6 man/cross_efficiency.Rd | 7 man/cross_efficiency_fuzzy.Rd | 5 man/efficiencies.Rd | 4 man/efficiencies.dea.Rd | 3 man/efficiencies.dea_fuzzy.Rd | 4 man/is.dea.Rd | 2 man/is.dea_fuzzy.Rd | 2 man/is.deadata.Rd | 2 man/is.deadata_fuzzy.Rd | 2 man/lambdas.Rd | 3 man/make_deadata.Rd | 2 man/make_deadata_fuzzy.Rd | 3 man/make_malmquist.Rd | 2 man/malmquist_index.Rd | 4 man/model_additive.Rd | 10 man/model_addmin.Rd | 10 man/model_addsupereff.Rd | 9 man/model_basic.Rd | 9 man/model_deaps.Rd | 9 man/model_dir.Rd | 8 man/model_fdh.Rd | 7 man/model_lgo.Rd | 8 man/model_multiplier.Rd | 8 man/model_nonradial.Rd | 9 man/model_profit.Rd | 6 man/model_qgo.Rd | 10 man/model_rdm.Rd | 9 man/model_sbmeff.Rd | 10 man/model_sbmsupereff.Rd | 10 man/model_supereff.Rd | 8 man/modelfuzzy_guotanaka.Rd | 7 man/modelfuzzy_kaoliu.Rd | 15 + man/modelfuzzy_possibilistic.Rd | 7 man/multipliers.Rd | 3 man/read_data.Rd | 3 man/read_data_fuzzy.Rd | 4 man/read_malmquist.Rd | 3 man/references.Rd | 5 man/rts.Rd | 4 man/slacks.Rd | 3 man/summary.dea.Rd | 6 man/summary.dea_fuzzy.Rd | 6 man/targets.Rd | 5 97 files changed, 938 insertions(+), 527 deletions(-)
Title: Fast Tidy Tools for Date and Date-Time Manipulation
Description: A set of fast tidy functions for wrangling, completing and
summarising date and date-time data. It combines 'tidyverse' syntax
with the efficiency of 'data.table' and speed of 'collapse'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between timeplyr versions 1.1.0 dated 2025-03-17 and 1.1.1 dated 2025-10-07
timeplyr-1.1.0/timeplyr/R/dt_utils.R |only timeplyr-1.1.0/timeplyr/R/timeplyr.R |only timeplyr-1.1.0/timeplyr/R/utils-pipe.R |only timeplyr-1.1.0/timeplyr/man/pipe.Rd |only timeplyr-1.1.0/timeplyr/tests/testthat/test-age_years.R |only timeplyr-1.1.1/timeplyr/DESCRIPTION | 22 - timeplyr-1.1.1/timeplyr/MD5 | 145 +++----- timeplyr-1.1.1/timeplyr/NAMESPACE | 10 timeplyr-1.1.1/timeplyr/NEWS.md | 11 timeplyr-1.1.1/timeplyr/R/abc.R | 178 +++++----- timeplyr-1.1.1/timeplyr/R/age_years.R | 14 timeplyr-1.1.1/timeplyr/R/calendar.R | 23 + timeplyr-1.1.1/timeplyr/R/collapse_utils.R | 25 - timeplyr-1.1.1/timeplyr/R/df_utils.R | 69 ++- timeplyr-1.1.1/timeplyr/R/fast_stats.R | 2 timeplyr-1.1.1/timeplyr/R/get_time_delay.R | 51 +- timeplyr-1.1.1/timeplyr/R/growth.R | 2 timeplyr-1.1.1/timeplyr/R/gsum.R | 107 ------ timeplyr-1.1.1/timeplyr/R/is_whole_number.R | 4 timeplyr-1.1.1/timeplyr/R/iso_week.R | 2 timeplyr-1.1.1/timeplyr/R/resolution.R | 15 timeplyr-1.1.1/timeplyr/R/roll.R | 14 timeplyr-1.1.1/timeplyr/R/roll_na_fill.R | 4 timeplyr-1.1.1/timeplyr/R/roll_utils.R | 22 - timeplyr-1.1.1/timeplyr/R/scales.R | 2 timeplyr-1.1.1/timeplyr/R/time_arithmetic.R | 66 ++- timeplyr-1.1.1/timeplyr/R/time_by.R | 66 ++- timeplyr-1.1.1/timeplyr/R/time_core.R | 10 timeplyr-1.1.1/timeplyr/R/time_cut.R | 154 ++++++-- timeplyr-1.1.1/timeplyr/R/time_diff.R | 36 +- timeplyr-1.1.1/timeplyr/R/time_elapsed.R | 2 timeplyr-1.1.1/timeplyr/R/time_episodes.R | 136 ++++++- timeplyr-1.1.1/timeplyr/R/time_expand.R | 55 +-- timeplyr-1.1.1/timeplyr/R/time_gaps.R | 6 timeplyr-1.1.1/timeplyr/R/time_ggplot.R | 54 +-- timeplyr-1.1.1/timeplyr/R/time_id.R | 4 timeplyr-1.1.1/timeplyr/R/time_interval.R | 48 +- timeplyr-1.1.1/timeplyr/R/time_is_regular.R | 4 timeplyr-1.1.1/timeplyr/R/time_roll.R | 26 - timeplyr-1.1.1/timeplyr/R/time_seq.R | 6 timeplyr-1.1.1/timeplyr/R/time_seq_fill.R | 2 timeplyr-1.1.1/timeplyr/R/time_seq_id.R | 28 - timeplyr-1.1.1/timeplyr/R/time_units.R | 5 timeplyr-1.1.1/timeplyr/R/time_utils.R | 47 -- timeplyr-1.1.1/timeplyr/R/timeplyr-package.R | 3 timeplyr-1.1.1/timeplyr/R/timespan.R | 10 timeplyr-1.1.1/timeplyr/R/ts_as_tbl.R | 30 - timeplyr-1.1.1/timeplyr/R/year_month.R | 25 - timeplyr-1.1.1/timeplyr/man/age_years.Rd | 2 timeplyr-1.1.1/timeplyr/man/get_time_delay.Rd | 6 timeplyr-1.1.1/timeplyr/man/is_whole_number.Rd | 4 timeplyr-1.1.1/timeplyr/man/time_add.Rd | 8 timeplyr-1.1.1/timeplyr/man/time_by.Rd | 14 timeplyr-1.1.1/timeplyr/man/time_cut.Rd | 79 ++-- timeplyr-1.1.1/timeplyr/man/time_diff.Rd | 60 +-- timeplyr-1.1.1/timeplyr/man/time_episodes.Rd | 16 timeplyr-1.1.1/timeplyr/man/time_expand.Rd | 12 timeplyr-1.1.1/timeplyr/man/time_gaps.Rd | 4 timeplyr-1.1.1/timeplyr/man/time_ggplot.Rd | 20 - timeplyr-1.1.1/timeplyr/man/time_is_regular.Rd | 2 timeplyr-1.1.1/timeplyr/man/time_roll.Rd | 6 timeplyr-1.1.1/timeplyr/man/timeplyr-package.Rd | 22 - timeplyr-1.1.1/timeplyr/man/ts_as_tbl.Rd | 4 timeplyr-1.1.1/timeplyr/tests/testthat.R | 2 timeplyr-1.1.1/timeplyr/tests/testthat/_snaps/time_by.md | 30 + timeplyr-1.1.1/timeplyr/tests/testthat/_snaps/time_episodes.md | 39 +- timeplyr-1.1.1/timeplyr/tests/testthat/test-calendar.R | 4 timeplyr-1.1.1/timeplyr/tests/testthat/test-get_time_delay.R | 76 ++-- timeplyr-1.1.1/timeplyr/tests/testthat/test-roll_mean.R | 38 +- timeplyr-1.1.1/timeplyr/tests/testthat/test-time_by.R | 27 - timeplyr-1.1.1/timeplyr/tests/testthat/test-time_core.R | 8 timeplyr-1.1.1/timeplyr/tests/testthat/test-time_diff.R | 4 timeplyr-1.1.1/timeplyr/tests/testthat/test-time_elapsed.R | 24 - timeplyr-1.1.1/timeplyr/tests/testthat/test-time_episodes.R | 176 ++++----- timeplyr-1.1.1/timeplyr/tests/testthat/test-time_expand.R | 145 ++++---- timeplyr-1.1.1/timeplyr/tests/testthat/test-time_roll.R | 8 76 files changed, 1267 insertions(+), 1118 deletions(-)
Title: 'R' 'SDK' and Exporters for 'OpenTelemetry'
Description: 'OpenTelemetry' is a collection of tools,
'APIs', and 'SDKs' used to instrument, generate, collect, and export
telemetry data (metrics, logs, and traces) for analysis in order to
understand your software's performance and behavior.
This package contains the 'OpenTelemetry' 'SDK', and exporters.
Use this package to export traces, metrics, logs from instrumented
'R' code. Use the 'otel' package to instrument your 'R' code for
'OpenTelemetry'.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
opentelemetry-cpp authors [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between otelsdk versions 0.2.1 dated 2025-09-23 and 0.2.2 dated 2025-10-07
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NEWS.md | 4 ++ configure | 10 +++--- src/span.c | 3 - src/vendor/opentelemetry-cpp.patch | 57 +++++++++++++++++++++++++++++++++++-- tests/testthat.R | 26 ++++++---------- tests/testthat/test-meter.R | 1 tests/testthat/test-print.R | 2 + 9 files changed, 89 insertions(+), 36 deletions(-)
Title: Flexible, Extensible, & Reproducible Pupillometry Preprocessing
Description: Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the S [...truncated...]
Author: Shawn Schwartz [aut, cre] ,
Mingjian He [ctb],
Haopei Yang [ctb],
Alice Xue [ctb],
Gustavo Santiago-Reyes [ctb]
Maintainer: Shawn Schwartz <shawn.t.schwartz@gmail.com>
Diff between eyeris versions 3.0.0 dated 2025-09-17 and 3.0.1 dated 2025-10-07
DESCRIPTION | 12 +- MD5 | 19 +-- NEWS.md | 14 ++ R/utils-checks.R | 50 +++++++++ R/zzz.R | 9 - README.md | 159 +++++++++++++++++++++++++++---- inst/WORDLIST | 5 inst/doc/complete-pipeline.html | 56 +++++----- inst/doc/epoching-bids-reports.html | 50 ++++----- man/check_arrow.Rd |only man/figures/README-unnamed-chunk-3-1.png |binary 11 files changed, 281 insertions(+), 93 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.9.6 dated 2025-10-01 and 0.9.7 dated 2025-10-07
DESCRIPTION | 10 MD5 | 90 +-- R/bage_mod-methods.R | 28 - R/fit.R | 31 - R/make-outputs.R | 35 - R/sim.R | 2 R/util.R | 222 +++++++- inst/doc/vig01_intro.R | 1 inst/doc/vig01_intro.Rmd | 1 inst/doc/vig01_intro.html | 144 ++--- inst/doc/vig04_svd.R | 1 inst/doc/vig04_svd.Rmd | 1 inst/doc/vig04_svd.html | 2 inst/doc/vig05_bdef.R | 1 inst/doc/vig05_bdef.Rmd | 1 inst/doc/vig05_bdef.html | 78 +- inst/doc/vig06_mortality.R | 1 inst/doc/vig06_mortality.Rmd | 26 inst/doc/vig06_mortality.html | 105 +-- inst/doc/vig07_simulation.R | 26 inst/doc/vig07_simulation.Rmd | 37 - inst/doc/vig07_simulation.html | 790 +++--------------------------- inst/doc/vig09_covariates.R | 1 inst/doc/vig09_covariates.Rmd | 1 inst/doc/vig09_covariates.html | 38 - inst/doc/vig10_datamod.R | 1 inst/doc/vig10_datamod.Rmd | 1 inst/doc/vig10_datamod.html | 86 +-- man/fit.bage_mod.Rd | 28 - src/Makevars | 1 tests/testthat/_snaps/bage_mod-methods.md | 4 tests/testthat/test-all-models.R | 2 tests/testthat/test-bage_mod-methods.R | 131 ++-- tests/testthat/test-bage_prior-methods.R | 2 tests/testthat/test-fit.R | 59 +- tests/testthat/test-make-inputs.R | 2 tests/testthat/test-make-outputs.R | 83 ++- tests/testthat/test-sim.R | 34 - tests/testthat/test-util.R | 255 +++++++++ vignettes/vig01_intro.Rmd | 1 vignettes/vig04_svd.Rmd | 1 vignettes/vig05_bdef.Rmd | 1 vignettes/vig06_mortality.Rmd | 26 vignettes/vig07_simulation.Rmd | 37 - vignettes/vig09_covariates.Rmd | 1 vignettes/vig10_datamod.Rmd | 1 46 files changed, 1223 insertions(+), 1207 deletions(-)
Title: Acquiring and Processing Data from Japan Institute for Health
Security
Description: Download and post process the infectious disease case data
from Japan Institute for Health Security. Also the package included
ready-to-analyse datasets. See the data source website for further details
<https://id-info.jihs.go.jp/>.
Author: Tomonori Hoshi [aut, cre],
Erina Ishigaki [aut],
Satoshi Kaneko [aut]
Maintainer: Tomonori Hoshi <tomonori.hoshi.japan@gmail.com>
Diff between jpinfect versions 0.1.3 dated 2025-09-11 and 0.1.4 dated 2025-10-07
DESCRIPTION | 6 MD5 | 18 +- R/jpinfect_get_bullet.R | 7 R/jpinfect_get_confirmed.R | 106 +++++++++++-- R/jpinfect_read_confirmed.R | 27 +++ data/bullet.rda |binary inst/doc/jpinfect.html | 204 +++++++++++++------------- inst/extdata/1999_Syu_11.xls |binary man/jpinfect_get_confirmed.Rd | 4 tests/testthat/test-jpinfect_read_confirmed.R | 5 10 files changed, 242 insertions(+), 135 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data. Has functions for extracting
and manipulating parameter estimates and predicted values (ci.lin
and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.60 dated 2025-07-08 and 2.61 dated 2025-10-07
CHANGES | 10 +++ DESCRIPTION | 14 ++-- MD5 | 126 ++++++++++++++++++++------------------ NAMESPACE | 3 R/paths.Lexis.R | 2 R/xcutLexis.R |only inst/doc/01flup.R | 80 ++++++++++++------------ inst/doc/01flup.pdf |binary inst/doc/02addLexis.pdf |binary inst/doc/03crisk.pdf |binary inst/doc/04simLexis.pdf |binary inst/doc/05yll.pdf |binary man/cutLexis.Rd | 18 +++-- man/paths.Lexis.Rd | 9 +- man/xcutLexis.Rd |only vignettes/01flup-Ieff.pdf |binary vignettes/01flup-IeffR.pdf |binary vignettes/01flup-box1.pdf |binary vignettes/01flup-box4.pdf |binary vignettes/01flup-dmL1.pdf |binary vignettes/01flup-dmL2.pdf |binary vignettes/01flup-dur-int-RR.pdf |binary vignettes/01flup-dur-int.pdf |binary vignettes/01flup-ins-time.pdf |binary vignettes/01flup-mbox.pdf |binary vignettes/01flup-mboxr.pdf |binary vignettes/01flup-pr-a.pdf |binary vignettes/01flup-sep-HR.pdf |binary vignettes/01flup-sep-mort.pdf |binary vignettes/01flup.R |only vignettes/01flup.pdf |only vignettes/01flup.rnw | 38 ++++++----- vignettes/01flup.tex | 116 ++++++++++++++++++---------------- vignettes/02addLexis.R |only vignettes/02addLexis.pdf |only vignettes/02addLexis.tex | 16 ++-- vignettes/03crisk-Sr1.pdf |binary vignettes/03crisk-Sr2.pdf |binary vignettes/03crisk-boxes.pdf |binary vignettes/03crisk-boxes4.pdf |binary vignettes/03crisk-boxes5.pdf |binary vignettes/03crisk-cR.pdf |binary vignettes/03crisk-crates.pdf |binary vignettes/03crisk-difrat.pdf |binary vignettes/03crisk-difratx.pdf |binary vignettes/03crisk-rates-ci.pdf |binary vignettes/03crisk-rates-l.pdf |binary vignettes/03crisk-rates.pdf |binary vignettes/03crisk-stack-ci.pdf |binary vignettes/03crisk-stack.pdf |binary vignettes/03crisk.R |only vignettes/03crisk.pdf |only vignettes/03crisk.tex | 8 +- vignettes/04simLexis-boxes.pdf |binary vignettes/04simLexis-comp-0.pdf |binary vignettes/04simLexis-mort-int.pdf |binary vignettes/04simLexis-pstate0.pdf |binary vignettes/04simLexis-pstatex.pdf |binary vignettes/04simLexis-pstatey.pdf |binary vignettes/04simLexis.R |only vignettes/04simLexis.pdf |only vignettes/04simLexis.tex | 18 ++--- vignettes/05yll-imm.pdf |binary vignettes/05yll-states.pdf |binary vignettes/05yll-sus.pdf |binary vignettes/05yll-tot.pdf |binary vignettes/05yll.R |only vignettes/05yll.pdf |only vignettes/05yll.tex | 10 +-- vignettes/fixall.bat | 22 +++--- 70 files changed, 266 insertions(+), 224 deletions(-)
Title: A Robust Interface to ArcGIS 'Geocoding Services'
Description: A very fast and robust interface to ArcGIS 'Geocoding
Services'. Provides capabilities for reverse geocoding, finding
address candidates, character-by-character search autosuggestion, and
batch geocoding. The public 'ArcGIS World Geocoder' is accessible for
free use via 'arcgisgeocode' for all services except batch geocoding.
'arcgisgeocode' also integrates with 'arcgisutils' to provide access
to custom locators or private 'ArcGIS World Geocoder' hosted on
'ArcGIS Enterprise'. Learn more in the 'Geocode service' API reference
<https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgisgeocode versions 0.3.0 dated 2025-07-28 and 0.4.0 dated 2025-10-07
arcgisgeocode-0.3.0/arcgisgeocode/R/sysdata.rda |only arcgisgeocode-0.3.0/arcgisgeocode/README.md |only arcgisgeocode-0.3.0/arcgisgeocode/data/world_geocoder.rda |only arcgisgeocode-0.3.0/arcgisgeocode/man/world_geocoder.Rd |only arcgisgeocode-0.4.0/arcgisgeocode/DESCRIPTION | 8 arcgisgeocode-0.4.0/arcgisgeocode/MD5 | 28 +- arcgisgeocode-0.4.0/arcgisgeocode/NAMESPACE | 1 arcgisgeocode-0.4.0/arcgisgeocode/NEWS.md | 5 arcgisgeocode-0.4.0/arcgisgeocode/R/core-batch-geocode.R | 120 ++++++---- arcgisgeocode-0.4.0/arcgisgeocode/R/doc-data.R | 13 - arcgisgeocode-0.4.0/arcgisgeocode/R/list-geocoders.R | 22 + arcgisgeocode-0.4.0/arcgisgeocode/R/utils-geocoder-obj.R | 16 - arcgisgeocode-0.4.0/arcgisgeocode/data/esri_wkids.rda |binary arcgisgeocode-0.4.0/arcgisgeocode/man/list_geocoders.Rd | 11 arcgisgeocode-0.4.0/arcgisgeocode/src/rust/src/batch_geocode.rs | 18 - arcgisgeocode-0.4.0/arcgisgeocode/src/rust/src/find_candidates.rs | 3 arcgisgeocode-0.4.0/arcgisgeocode/tests/testthat/_snaps |only arcgisgeocode-0.4.0/arcgisgeocode/tests/testthat/test-geocode-addresses.R |only 18 files changed, 155 insertions(+), 90 deletions(-)
Title: Ecometric Models of Trait–Environment Relationships at the
Community Level
Description: Provides a framework for modeling relationships between functional traits and both quantitative and qualitative environmental variables at the community level. It includes tools for trait binning, likelihood-based environmental estimation, model evaluation, fossil projection into modern ecometric space, and result visualization. For more details see Vermillion et al. (2018) <doi:10.1007/978-3-319-94265-0_17>, Polly et al. (2011) <doi:10.1098/rspb.2010.2233> and Polly and Head (2015) <doi:10.1017/S1089332600002953>.
Author: Maria A. Hurtado-Materon [cre, aut],
Leila Siciliano-Martina [aut],
A. Michelle Lawing [cph, aut]
Maintainer: Maria A. Hurtado-Materon <maria.h.m_1995@tamu.edu>
Diff between commecometrics versions 1.0.0 dated 2025-07-22 and 1.0.1 dated 2025-10-07
DESCRIPTION | 6 ++--- MD5 | 42 +++++++++++++++++++-------------------- NEWS.md | 5 ++++ R/data.R | 4 +-- R/ecometric_model.R | 11 ++++------ R/ecometric_model_qual.R | 12 +++++------ R/ecometric_space_qual.R | 16 +++----------- R/optimal_bins.R | 2 - R/reconstruct_env.R | 4 +-- R/reconstruct_env_qual.R | 16 +++++++------- R/sensitivity_analysis.R | 8 +++---- R/sensitivity_analysis_qual.R | 8 +++---- build/vignette.rds |binary man/ecometric_model.Rd | 11 ++++------ man/ecometric_model_qual.Rd | 12 +++++------ man/ecometric_space_qual.Rd | 7 +----- man/fossils.Rd | 4 +-- man/optimal_bins.Rd | 2 - man/reconstruct_env.Rd | 4 +-- man/reconstruct_env_qual.Rd | 10 ++++----- man/sensitivity_analysis.Rd | 8 +++---- man/sensitivity_analysis_qual.Rd | 8 +++---- 22 files changed, 96 insertions(+), 104 deletions(-)
More information about commecometrics at CRAN
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