Tue, 07 Oct 2025

Package tmvtnsim updated to version 0.1.4 with previous version 0.1.3 dated 2022-10-09

Title: Truncated Multivariate Normal and t Distribution Simulation
Description: Simulation of random vectors from truncated multivariate normal and t distributions based on the algorithms proposed by Yifang Li and Sujit K. Ghosh (2015) <doi:10.1080/15598608.2014.996690>.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>

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Package RLescalation updated to version 1.0.3 with previous version 1.0.2 dated 2025-02-07

Title: Optimal Dose Escalation Using Deep Reinforcement Learning
Description: An implementation to compute an optimal dose escalation rule using deep reinforcement learning in phase I oncology trials (Matsuura et al. (2023) <doi:10.1080/10543406.2023.2170402>). The dose escalation rule can directly optimize the percentages of correct selection (PCS) of the maximum tolerated dose (MTD).
Author: Kentaro Matsuura [aut, cre, cph]
Maintainer: Kentaro Matsuura <matsuurakentaro55@gmail.com>

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Package runonce updated to version 0.3.3 with previous version 0.3.2 dated 2025-07-30

Title: Run Once and Save Result
Description: Package 'runonce' helps automating the saving of long-running code to help running the same code multiple times. If you run some long-running code once, it saves the result in a file on disk. Then, if the result already exists, i.e. if the code has already been run and its output has already been saved, it just reads the result from the stored file instead of running the code again.
Author: Florian Prive [aut, cre]
Maintainer: Florian Prive <florian.prive.21@gmail.com>

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Package ipeaplot updated to version 0.5.0 with previous version 0.4.1 dated 2025-02-26

Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the editorial guidelines of the Institute for Applied Economic Research (Ipea).
Author: Pedro Ferreira [aut, cre], Pedro Jorge [aut], Daniel Lima [aut], Gustavo Coelho [aut], Rafael H. M. Pereira [aut], Lucas Mation [aut], Fabio Vaz [ctb], Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>

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Package bipartite updated to version 2.23 with previous version 2.22 dated 2025-09-08

Title: Visualising Bipartite Networks and Calculating Some (Ecological) Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann [aut, cre] , Jochen Fruend [aut] , Bernd Gruber [aut] , Tobias Bauer [ctb] , Stephen Beckett [ctb] , Mariano Devoto [ctb] , Gabriel M.F. Felix [ctb] , Jose M. Iriondo [ctb] , Tore Opsahl [ctb] , Rafael B.P. Pinheiro [ctb] , Rouven [...truncated...]
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>

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Package modsem updated to version 1.0.13 with previous version 1.0.12 dated 2025-08-27

Title: Latent Interaction (and Moderation) Analysis in Structural Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables in structural equation models (SEM). The supported methods are: The constrained approach (Algina & Moulder, 2001). The unconstrained approach (Marsh et al., 2004). The residual centering approach (Little et al., 2006). The double centering approach (Lin et al., 2010). The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000). The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) The constrained- unconstrained, residual- and double centering- approaches are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches are estimated via 'modsem' it self. Alternatively model can be estimated via 'Mplus' (Muthén & Muthén, 1998-2017). References: Algina, J., & Moulder, B. C. (2001). <doi:10.1207/S15328007SEM0801_3>. "A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3." Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] , Mehmet Mehmetoglu [ctb] , Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>

Diff between modsem versions 1.0.12 dated 2025-08-27 and 1.0.13 dated 2025-10-07

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Package gam.hp updated to version 0.0-4 with previous version 0.0-3 dated 2024-12-15

Title: Hierarchical Partitioning of Adjusted R2 and Explained Deviance for Generalized Additive Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor towards adjusted R2 and explained deviance for generalized additive models based on output of 'gam()' and 'bam()' in 'mgcv' package, applying the algorithm in this paper: Lai(2024) <doi:10.1016/j.pld.2024.06.002>.
Author: Jiangshan Lai [aut, cre] , Jing Tang [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>

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Package deaR updated to version 1.5.1 with previous version 1.5 dated 2025-06-13

Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models. See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Bolos [aut, cre], Vicente Coll-Serrano [aut], Rafael Benitez Suarez [aut]
Maintainer: Vicente Bolos <vicente.bolos@uv.es>

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Package timeplyr updated to version 1.1.1 with previous version 1.1.0 dated 2025-03-17

Title: Fast Tidy Tools for Date and Date-Time Manipulation
Description: A set of fast tidy functions for wrangling, completing and summarising date and date-time data. It combines 'tidyverse' syntax with the efficiency of 'data.table' and speed of 'collapse'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>

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Package otelsdk updated to version 0.2.2 with previous version 0.2.1 dated 2025-09-23

Title: 'R' 'SDK' and Exporters for 'OpenTelemetry'
Description: 'OpenTelemetry' is a collection of tools, 'APIs', and 'SDKs' used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package contains the 'OpenTelemetry' 'SDK', and exporters. Use this package to export traces, metrics, logs from instrumented 'R' code. Use the 'otel' package to instrument your 'R' code for 'OpenTelemetry'.
Author: Gabor Csardi [aut, cre], Posit Software, PBC [cph, fnd] , opentelemetry-cpp authors [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>

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Package eyeris updated to version 3.0.1 with previous version 3.0.0 dated 2025-09-17

Title: Flexible, Extensible, & Reproducible Pupillometry Preprocessing
Description: Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the S [...truncated...]
Author: Shawn Schwartz [aut, cre] , Mingjian He [ctb], Haopei Yang [ctb], Alice Xue [ctb], Gustavo Santiago-Reyes [ctb]
Maintainer: Shawn Schwartz <shawn.t.schwartz@gmail.com>

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Package bage updated to version 0.9.7 with previous version 0.9.6 dated 2025-10-01

Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre], Junni Zhang [aut], Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>

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Package jpinfect updated to version 0.1.4 with previous version 0.1.3 dated 2025-09-11

Title: Acquiring and Processing Data from Japan Institute for Health Security
Description: Download and post process the infectious disease case data from Japan Institute for Health Security. Also the package included ready-to-analyse datasets. See the data source website for further details <https://id-info.jihs.go.jp/>.
Author: Tomonori Hoshi [aut, cre], Erina Ishigaki [aut], Satoshi Kaneko [aut]
Maintainer: Tomonori Hoshi <tomonori.hoshi.japan@gmail.com>

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Package Epi updated to version 2.61 with previous version 2.60 dated 2025-07-08

Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data. In particular representation, manipulation, rate estimation and simulation for multistate data - the Lexis suite of functions, which includes interfaces to 'mstate', 'etm' and 'cmprsk' packages. Contains functions for Age-Period-Cohort and Lee-Carter modeling and a function for interval censored data. Has functions for extracting and manipulating parameter estimates and predicted values (ci.lin and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre], Martyn Plummer [aut], Esa Laara [ctb], Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>

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Package arcgisgeocode updated to version 0.4.0 with previous version 0.3.0 dated 2025-07-28

Title: A Robust Interface to ArcGIS 'Geocoding Services'
Description: A very fast and robust interface to ArcGIS 'Geocoding Services'. Provides capabilities for reverse geocoding, finding address candidates, character-by-character search autosuggestion, and batch geocoding. The public 'ArcGIS World Geocoder' is accessible for free use via 'arcgisgeocode' for all services except batch geocoding. 'arcgisgeocode' also integrates with 'arcgisutils' to provide access to custom locators or private 'ArcGIS World Geocoder' hosted on 'ArcGIS Enterprise'. Learn more in the 'Geocode service' API reference <https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>

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Package commecometrics updated to version 1.0.1 with previous version 1.0.0 dated 2025-07-22

Title: Ecometric Models of Trait–Environment Relationships at the Community Level
Description: Provides a framework for modeling relationships between functional traits and both quantitative and qualitative environmental variables at the community level. It includes tools for trait binning, likelihood-based environmental estimation, model evaluation, fossil projection into modern ecometric space, and result visualization. For more details see Vermillion et al. (2018) <doi:10.1007/978-3-319-94265-0_17>, Polly et al. (2011) <doi:10.1098/rspb.2010.2233> and Polly and Head (2015) <doi:10.1017/S1089332600002953>.
Author: Maria A. Hurtado-Materon [cre, aut], Leila Siciliano-Martina [aut], A. Michelle Lawing [cph, aut]
Maintainer: Maria A. Hurtado-Materon <maria.h.m_1995@tamu.edu>

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