Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre] ,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 1.2.14 dated 2025-07-11 and 1.2.15 dated 2025-10-18
DESCRIPTION | 10 ++-- MD5 | 42 +++++++++---------- NAMESPACE | 2 R/wiki_utils.R | 21 ++++++--- README.md | 4 - build/vignette.rds |binary inst/doc/wiki_utils.html | 39 +++++++++-------- man/filext.Rd | 58 +++++++++++++------------- man/getFiles.Rd | 102 +++++++++++++++++++++++------------------------ man/getWikiFiles.Rd | 88 ++++++++++++++++++++-------------------- man/httrGetJSON.Rd | 62 ++++++++++++++-------------- man/limitRequester.Rd | 3 - man/nametoWikiFrame.Rd | 74 +++++++++++++++++----------------- man/nametoWikiHtml.Rd | 70 ++++++++++++++++---------------- man/nametoWikiURL.Rd | 74 +++++++++++++++++----------------- man/preName.Rd | 60 +++++++++++++-------------- man/searchWiki.Rd | 96 ++++++++++++++++++++++---------------------- man/selectLang.Rd | 48 +++++++++++----------- man/urltoFrame.Rd | 70 ++++++++++++++++---------------- man/urltoHtml.Rd | 86 +++++++++++++++++++-------------------- man/validUrl.Rd | 56 ++++++++++++------------- man/w_query.Rd | 4 - 22 files changed, 537 insertions(+), 532 deletions(-)
Title: A Modular, Integrated Approach to Maximum Entropy Distribution
Modeling
Description: Tools for training, selecting, and evaluating maximum entropy
(and standard logistic regression) distribution models. This package
provides tools for user-controlled transformation of explanatory variables,
selection of variables by nested model comparison, and flexible model
evaluation and projection. It follows principles based on the maximum-
likelihood interpretation of maximum entropy modeling, and uses infinitely-
weighted logistic regression for model fitting. The package is described in
Vollering et al. (2019; <doi:10.1002/ece3.5654>).
Author: Julien Vollering [aut, cre],
Sabrina Mazzoni [aut],
Rune Halvorsen [aut],
Steven Phillips [cph],
Michael Bedward [ctb]
Maintainer: Julien Vollering <julienvollering@gmail.com>
Diff between MIAmaxent versions 1.3.1 dated 2024-08-23 and 1.4.0 dated 2025-10-18
MIAmaxent-1.3.1/MIAmaxent/inst/doc/a-modeling-example.html.asis |only MIAmaxent-1.3.1/MIAmaxent/man/release_questions.Rd |only MIAmaxent-1.3.1/MIAmaxent/vignettes/a-modeling-example.html.asis |only MIAmaxent-1.4.0/MIAmaxent/DESCRIPTION | 12 MIAmaxent-1.4.0/MIAmaxent/MD5 | 32 MIAmaxent-1.4.0/MIAmaxent/NEWS.md | 158 ++-- MIAmaxent-1.4.0/MIAmaxent/R/deriveVars.R | 1 MIAmaxent-1.4.0/MIAmaxent/R/plotFOP.R | 2 MIAmaxent-1.4.0/MIAmaxent/R/testAUC.R | 9 MIAmaxent-1.4.0/MIAmaxent/R/utils.R | 30 MIAmaxent-1.4.0/MIAmaxent/README.md | 6 MIAmaxent-1.4.0/MIAmaxent/build/partial.rdb |binary MIAmaxent-1.4.0/MIAmaxent/build/vignette.rds |binary MIAmaxent-1.4.0/MIAmaxent/inst/doc/NCEAS.R |only MIAmaxent-1.4.0/MIAmaxent/inst/doc/NCEAS.Rmd |only MIAmaxent-1.4.0/MIAmaxent/inst/doc/NCEAS.html |only MIAmaxent-1.4.0/MIAmaxent/inst/doc/a-modeling-example.R |only MIAmaxent-1.4.0/MIAmaxent/inst/doc/a-modeling-example.Rmd |only MIAmaxent-1.4.0/MIAmaxent/inst/doc/a-modeling-example.html | 323 +++++----- MIAmaxent-1.4.0/MIAmaxent/vignettes/NCEAS.Rmd |only MIAmaxent-1.4.0/MIAmaxent/vignettes/a-modeling-example.Rmd | 73 -- MIAmaxent-1.4.0/MIAmaxent/vignettes/references.bib |only 22 files changed, 330 insertions(+), 316 deletions(-)
Title: Marginal Modeling for Exposure Data with Values Below the LOD
Description: Functions of marginal mean and quantile regression models are used to analyze environmental exposure and biomonitoring data with repeated measurements and non-detects (i.e., values below the limit of detection (LOD)), as well as longitudinal exposure data that include non-detects and time-dependent covariates. For more details see Chen IC, Bertke SJ, Curwin BD (2021) <doi:10.1038/s41370-021-00345-1>, Chen IC, Bertke SJ, Estill CF (2024) <doi:10.1038/s41370-024-00640-7>, Chen IC, Bertke SJ, Dahm MM (2024) <doi:10.1093/annweh/wxae068>, and Chen IC (2025) <doi:10.1038/s41370-025-00752-8>.
Author: I-Chen Chen [cre, aut] ,
Philip Westgate [ctb],
Liya Fu [ctb]
Maintainer: I-Chen Chen <flecsh@gmail.com>
Diff between marlod versions 0.2.1 dated 2025-05-27 and 0.2.2 dated 2025-10-18
DESCRIPTION | 8 +-- MD5 | 16 +++---- NEWS.md | 62 +++++++++++++++-------------- R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/marlod.html | 106 +++++++++++++++++++++++++-------------------------- man/Fillin.Rd | 6 +- man/Modified.QIF.Rd | 12 ++--- 9 files changed, 109 insertions(+), 103 deletions(-)
Title: Interpretation of Heterogeneous Single-Cell Gene Expression Data
Description: We develop a novel matrix factorization tool named 'scINSIGHT' to jointly analyze multiple single-cell gene expression samples from biologically heterogeneous sources, such as different disease phases, treatment groups, or developmental stages. Given multiple gene expression samples from different biological conditions, 'scINSIGHT' simultaneously identifies common and condition-specific gene modules and quantify their expression levels in each sample in a lower-dimensional space. With the factorized results, the inferred expression levels and memberships of common gene modules can be used to cluster cells and detect cell identities, and the condition-specific gene modules can help compare functional differences in transcriptomes from distinct conditions. Please also see Qian K, Fu SW, Li HW, Li WV (2022) <doi:10.1186/s13059-022-02649-3>.
Author: Kun Qian [aut, ctb, cre] ,
Wei Vivian Li [aut, ctb]
Maintainer: Kun Qian <Kun_Qian@foxmail.com>
Diff between scINSIGHT versions 0.1.4 dated 2022-05-29 and 0.1.5 dated 2025-10-18
DESCRIPTION | 14 ++++++++------ MD5 | 9 +++++---- R/RcppExports.R | 30 +++++++++++++++--------------- README.md |only src/Makevars | 2 +- src/Makevars.win | 2 +- 6 files changed, 30 insertions(+), 27 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 2.1 dated 2025-06-17 and 2.2 dated 2025-10-18
DESCRIPTION | 8 +-- MD5 | 110 +++++++++++++++++++++++++++------------------------- R/ABWilcox.R | 2 R/ABbinomial.R | 9 ++-- R/ABdescrip.R | 3 - R/ABma.R | 16 ++++--- R/ABregres.R | 21 +++++++-- R/ABrf2.R | 3 - R/ABrobust.R | 7 +-- R/ABttest.R | 6 ++ R/Aregres.R | 17 +++++--- R/Arimadiff.R | 6 +- R/Arimama.R | 5 +- R/Arobust.R | 2 R/CDCabove.R | 9 ++-- R/CDCbelow.R | 9 ++-- R/Cchart.R | 14 +++--- R/GABrf2.R | 2 R/GABttest.R | 2 R/Gindex.R | 15 ++++--- R/IRDabove.R | 6 +- R/IRDbelow.R | 6 +- R/NAPabove.R | 6 +- R/NAPbelow.R | 6 +- R/PANDabove.R | 6 +- R/PANDbelow.R | 3 - R/PEMabove.R | 6 +- R/PEMbelow.R | 8 +-- R/PNDabove.R | 6 +- R/PNDbelow.R | 6 +- R/Pchart.R | 17 ++++---- R/RMEffectsize.R |only R/RMttest.R |only R/RSIQRline.R | 3 - R/RSPCline.R |only R/Rchart.R | 16 +------ R/Rchartsd.R | 6 +- R/RobustCDCabove.R | 11 ++--- R/RobustCDCbelow.R | 10 ++-- R/SPClegend.R | 8 ++- R/SPCline.R | 4 - R/XRchart.R | 11 ----- R/Xmrchart.R | 9 ---- R/diffchart.R | 12 +++-- R/meanabove.R | 7 ++- R/meanbelow.R | 11 +++-- R/medabove.R | 10 ++-- R/medbelow.R | 7 +-- R/metareg.R | 2 R/metaregi.R | 3 - R/regabove.R | 13 +++--- R/regbelow.R | 10 +++- R/robregabove.R | 12 ++--- R/robregbelow.R | 11 +++-- R/trimabove.R | 8 ++- R/trimbelow.R | 8 ++- man/RMEffectsize.Rd |only man/RMttest.Rd |only man/RSPCline.Rd |only 59 files changed, 292 insertions(+), 242 deletions(-)
Title: Flexible Client for the 'Financial Modeling Prep' API
Description: Provides a flexible interface to the 'Financial Modeling Prep' API
<https://site.financialmodelingprep.com/developer/docs>. The package
supports all available endpoints and parameters, enabling R users
to interact with a wide range of financial data.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between fmpapi versions 0.2.1 dated 2025-05-07 and 1.0.0 dated 2025-10-18
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 6 ++ R/fmp_get.R | 44 +++++++++++++++---- README.md | 8 --- man/fmp_get.Rd | 2 tests/testthat/test-fmp_get.R | 96 ++++++++++++++++++++++++++++++++++++++++++ 7 files changed, 147 insertions(+), 27 deletions(-)
Title: Transition Network Analysis (TNA)
Description: Provides tools for performing Transition Network Analysis (TNA) to
study relational dynamics, including functions for building and plotting TNA
models, calculating centrality measures, and identifying dominant events and
patterns. TNA statistical techniques (e.g., bootstrapping and permutation
tests) ensure the reliability of observed insights and confirm that
identified dynamics are meaningful. See (Saqr et al., 2025)
<doi:10.1145/3706468.3706513> for more details on TNA.
Author: Mohammed Saqr [aut],
Santtu Tikka [aut],
Sonsoles Lopez-Pernas [aut, cre]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between tna versions 1.0.0 dated 2025-07-15 and 1.1.0 dated 2025-10-18
tna-1.0.0/tna/tests/testthat/test-tna.R |only tna-1.1.0/tna/DESCRIPTION | 16 tna-1.1.0/tna/MD5 | 152 +++-- tna-1.1.0/tna/NAMESPACE | 18 tna-1.1.0/tna/NEWS.md | 15 tna-1.1.0/tna/R/betweenness.R | 7 tna-1.1.0/tna/R/bootstrap.R | 143 ++++- tna-1.1.0/tna/R/build.R | 395 ++++++++++++-- tna-1.1.0/tna/R/centralities.R | 47 - tna-1.1.0/tna/R/check.R | 91 ++- tna-1.1.0/tna/R/cliques.R | 3 tna-1.1.0/tna/R/clusters.R | 549 ++++++-------------- tna-1.1.0/tna/R/coef.R |only tna-1.1.0/tna/R/colors.R | 8 tna-1.1.0/tna/R/communities.R | 17 tna-1.1.0/tna/R/compare.R | 192 ++++++ tna-1.1.0/tna/R/data.R | 257 ++++++--- tna-1.1.0/tna/R/groups.R |only tna-1.1.0/tna/R/indices.R |only tna-1.1.0/tna/R/mmm.R |only tna-1.1.0/tna/R/permutation.R | 59 +- tna-1.1.0/tna/R/plot.R | 393 +++++++++----- tna-1.1.0/tna/R/print.R | 222 +++++--- tna-1.1.0/tna/R/pruning.R | 6 tna-1.1.0/tna/R/summary.R | 41 + tna-1.1.0/tna/R/tna-package.R | 8 tna-1.1.0/tna/R/utilities.R | 74 ++ tna-1.1.0/tna/R/vcov.R |only tna-1.1.0/tna/R/zzz.R | 11 tna-1.1.0/tna/data/engagement.rda |binary tna-1.1.0/tna/data/engagement_mmm.rda |binary tna-1.1.0/tna/inst/doc/communities_and_cliques.html | 21 tna-1.1.0/tna/inst/doc/complete_tutorial.html | 8 tna-1.1.0/tna/inst/doc/grouped_sequences.html | 124 ++-- tna-1.1.0/tna/man/betweenness_network.Rd | 7 tna-1.1.0/tna/man/bootstrap.Rd | 10 tna-1.1.0/tna/man/bootstrap_cliques.Rd |only tna-1.1.0/tna/man/build_model.Rd | 125 +++- tna-1.1.0/tna/man/centralities.Rd | 10 tna-1.1.0/tna/man/cluster_sequences.Rd |only tna-1.1.0/tna/man/communities.Rd | 8 tna-1.1.0/tna/man/compare.Rd | 5 tna-1.1.0/tna/man/compare.group_tna.Rd | 9 tna-1.1.0/tna/man/compare_sequences.Rd |only tna-1.1.0/tna/man/estimate_centrality_stability.Rd | 40 + tna-1.1.0/tna/man/group_model.Rd | 53 + tna-1.1.0/tna/man/import_data.Rd | 5 tna-1.1.0/tna/man/import_onehot.Rd |only tna-1.1.0/tna/man/mmm_stats.Rd | 5 tna-1.1.0/tna/man/permutation_test.Rd | 3 tna-1.1.0/tna/man/permutation_test.group_tna.Rd | 9 tna-1.1.0/tna/man/plot.group_tna.Rd | 2 tna-1.1.0/tna/man/plot.group_tna_bootstrap.Rd | 4 tna-1.1.0/tna/man/plot.group_tna_communities.Rd | 2 tna-1.1.0/tna/man/plot.tna_comparison.Rd | 5 tna-1.1.0/tna/man/plot.tna_sequence_comparison.Rd |only tna-1.1.0/tna/man/plot_associations.Rd |only tna-1.1.0/tna/man/plot_compare.Rd | 5 tna-1.1.0/tna/man/plot_compare.group_tna.Rd | 5 tna-1.1.0/tna/man/plot_mosaic.group_tna.Rd | 2 tna-1.1.0/tna/man/plot_sequences.Rd | 11 tna-1.1.0/tna/man/prepare_data.Rd | 55 +- tna-1.1.0/tna/man/print.summary.group_tna.Rd | 2 tna-1.1.0/tna/man/print.tna.Rd | 7 tna-1.1.0/tna/man/print.tna_communities.Rd | 2 tna-1.1.0/tna/man/print.tna_comparison.Rd | 5 tna-1.1.0/tna/man/print.tna_data.Rd | 1 tna-1.1.0/tna/man/print.tna_sequence_comparison.Rd |only tna-1.1.0/tna/man/print.tna_stability.Rd | 2 tna-1.1.0/tna/man/rename_groups.Rd | 6 tna-1.1.0/tna/man/simulate.tna.Rd | 1 tna-1.1.0/tna/man/sna.Rd |only tna-1.1.0/tna/tests/testthat/helper-mock.R | 53 + tna-1.1.0/tna/tests/testthat/test-bootstrap.R | 8 tna-1.1.0/tna/tests/testthat/test-build.R |only tna-1.1.0/tna/tests/testthat/test-centralities.R | 4 tna-1.1.0/tna/tests/testthat/test-clusters.R | 123 ---- tna-1.1.0/tna/tests/testthat/test-compare.R | 17 tna-1.1.0/tna/tests/testthat/test-data.R | 76 ++ tna-1.1.0/tna/tests/testthat/test-groups.R |only tna-1.1.0/tna/tests/testthat/test-indices.R |only tna-1.1.0/tna/tests/testthat/test-mmm.R |only tna-1.1.0/tna/tests/testthat/test-permutation.R | 34 - tna-1.1.0/tna/tests/testthat/test-plot.R | 85 ++- tna-1.1.0/tna/tests/testthat/test-print.R | 31 + tna-1.1.0/tna/tests/testthat/test-pruning.R | 2 86 files changed, 2473 insertions(+), 1243 deletions(-)
Title: Reproducible and Flexible Label Design
Description: An open-source R package to deploys reproducible and flexible labels using layers.
The 'huito' package is part of the 'inkaverse' project for developing different procedures and
tools used in plant science and experimental designs.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between huito versions 0.2.5 dated 2024-09-05 and 0.2.6 dated 2025-10-18
huito-0.2.5/huito/inst/doc/labels.Rmd |only huito-0.2.5/huito/vignettes/labels.Rmd |only huito-0.2.6/huito/DESCRIPTION | 21 - huito-0.2.6/huito/MD5 | 50 +-- huito-0.2.6/huito/NEWS.md | 7 huito-0.2.6/huito/R/include_image.R | 3 huito-0.2.6/huito/R/include_text.R | 21 + huito-0.2.6/huito/R/label_layout.R | 7 huito-0.2.6/huito/R/label_print.R | 21 - huito-0.2.6/huito/build/vignette.rds |binary huito-0.2.6/huito/inst/doc/germinar.R | 7 huito-0.2.6/huito/inst/doc/germinar.Rmd | 9 huito-0.2.6/huito/inst/doc/germinar.html | 52 +-- huito-0.2.6/huito/inst/doc/huito.R | 6 huito-0.2.6/huito/inst/doc/huito.html | 4 huito-0.2.6/huito/inst/doc/labels.R | 37 +- huito-0.2.6/huito/inst/doc/labels.html | 465 +++++++++++-------------------- huito-0.2.6/huito/inst/doc/labels.qmd |only huito-0.2.6/huito/inst/doc/stickers.R | 32 +- huito-0.2.6/huito/inst/doc/stickers.Rmd | 32 +- huito-0.2.6/huito/inst/doc/stickers.html | 73 +++- huito-0.2.6/huito/man/fieldbook.Rd | 14 huito-0.2.6/huito/man/include_text.Rd | 8 huito-0.2.6/huito/man/label_layout.Rd | 7 huito-0.2.6/huito/man/label_print.Rd | 11 huito-0.2.6/huito/vignettes/germinar.Rmd | 9 huito-0.2.6/huito/vignettes/labels.qmd |only huito-0.2.6/huito/vignettes/stickers.Rmd | 32 +- 28 files changed, 479 insertions(+), 449 deletions(-)
Title: A 'ggplot2' Extension for Composable Visualization
Description: A 'ggplot2' extension providing an integrative framework for
composable visualization, enabling the creation of complex multi-plot
layouts such as insets, circular arrangements, and multi-panel compositions.
Built on the grammar of graphics, it offers tools to align, stack, and nest
plots, simplifying the construction of richly annotated figures for
high-dimensional data contexts—such as genomics, transcriptomics, and
microbiome studies—by making it easy to link related plots, overlay
clustering results, or highlight shared patterns.
Author: Yun Peng [aut, cre] ,
Shixiang Wang [aut] ,
Guangchuang Yu [ths]
Maintainer: Yun Peng <yunyunp96@163.com>
Diff between ggalign versions 1.1.0 dated 2025-09-11 and 1.2.0 dated 2025-10-18
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Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre] ,
Conrad Sanderson [cph] ,
Ryan Curtin [cph] ,
Siddharth Agrawal [cph] ),
Brendan Frey [cph] ),
Delbert Dueck [cph] ,
Vitalie Spinu [ctb] ,
Frederiek - Maarten Kerckhof [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.3.4 dated 2025-09-14 and 1.3.5 dated 2025-10-18
DESCRIPTION | 26 ++++-------- MD5 | 26 ++++++------ NEWS.md | 10 ++++ R/RcppExports.R | 4 + R/clustering_functions.R | 29 +++++++++++--- README.md | 20 ++------- build/vignette.rds |binary inst/doc/the_clusterR_package.html | 12 ++--- inst/include/ClusterRHeader.h | 76 ++++++++++++++++++++++++++++++++++++- man/predict_GMM.Rd | 3 - src/RcppExports.cpp | 15 +++++++ src/export_inst_folder_headers.cpp | 15 +++++++ src/init.c | 2 tests/testthat/test-gmm.R | 71 ++++++++++++++++++++++++++++++++++ 14 files changed, 251 insertions(+), 58 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
'Cramer V' for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.7.2 dated 2023-02-01 and 0.7.3 dated 2025-10-18
DESCRIPTION | 8 - MD5 | 44 ++++---- NEWS.md | 10 + R/box_m.R | 10 - R/sign_test.R | 2 R/wilcox_test.R | 2 README.md | 91 ++++++++---------- man/box_m.Rd | 10 - man/chisq_test.Rd | 2 man/cor_plot.Rd | 14 +- man/fisher_test.Rd | 8 - man/wilcox_test.Rd | 2 tests/testthat/test-remove_ns.R | 47 ++++++--- tests/testthat/test-wilcox_test.R | 32 +++++- tools/README-comaprison-against-reference-group-1.png |binary tools/README-comaprison-against-reference-group-2.png |binary tools/README-comparison-against-base-mean-1.png |binary tools/README-custoize-p-value-labels-1.png |binary tools/README-grouped-two-sample-t-test-1.png |binary tools/README-paired-t-test-1.png |binary tools/README-pairwise-comparisons-1.png |binary tools/README-unnamed-chunk-10-1.png |binary tools/README-unpaired-two-sample-t-test-1.png |binary 23 files changed, 161 insertions(+), 121 deletions(-)
Title: Non-Smooth Regularization for Structural Equation Models
Description: Provides regularized structural equation modeling
(regularized SEM) with non-smooth penalty functions (e.g., lasso) building
on 'lavaan'. The package is heavily inspired by the
['regsem'](<https://github.com/Rjacobucci/regsem>) and
['lslx'](<https://github.com/psyphh/lslx>) packages.
Author: Jannik H. Orzek [aut, cre, cph]
Maintainer: Jannik H. Orzek <jannik.orzek@mailbox.org>
Diff between lessSEM versions 1.5.6 dated 2025-08-25 and 1.5.7 dated 2025-10-18
DESCRIPTION | 6 +- MD5 | 30 +++++----- inst/doc/Definition-Variables-and-Multi-Group-SEM.html | 5 + inst/doc/Estimator-Settings.html | 5 + inst/doc/General-Purpose-Optimization.html | 5 + inst/doc/Mixed-Penalties.html | 5 + inst/doc/Parameter-transformations.html | 5 + inst/doc/The-Structural-Equation-Model.html | 5 + inst/doc/lessSEM.html | 5 + inst/include/lesstimate/include/lesstimate/bfgs.h | 2 inst/include/lesstimate/include/lesstimate/bfgsOptim.h | 4 - inst/include/lesstimate/include/lesstimate/glmnet_class.h | 4 - inst/include/lesstimate/include/lesstimate/glmnet_lsp.h | 2 inst/include/lesstimate/include/lesstimate/glmnet_mcp.h | 2 inst/include/lesstimate/include/lesstimate/ista_class.h | 6 +- inst/include/lesstimate/include/lesstimate/ista_mixedPenalty.h | 2 16 files changed, 51 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-06 2.1.16
2022-01-20 2.1.9
2021-12-02 2.1.7
2021-03-15 2.0.7
2020-12-16 2.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-06 0.6.3
2024-07-14 0.6.2
2024-04-09 0.6.1
2023-10-16 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-11 0.3.8
Title: Fuzzy Clustering
Description: Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visualizing fuzzy clustering results.
Author: Paolo Giordani [aut, cre],
Maria Brigida Ferraro [aut],
Alessio Serafini [aut]
Maintainer: Paolo Giordani <paolo.giordani@uniroma1.it>
Diff between fclust versions 2.1.2 dated 2025-07-22 and 2.1.3 dated 2025-10-18
DESCRIPTION | 10 ++--- MD5 | 14 ++++---- NEWS.md | 4 ++ inst/CITATION | 2 - src/F.cpp | 4 +- src/FKM_rcpp.cpp | 92 +++++++++++++++++++++++++++---------------------------- src/func.cpp | 2 - src/memDeg.cpp | 2 - 8 files changed, 67 insertions(+), 63 deletions(-)
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 3.1-8 dated 2025-08-18 and 3.1-9 dated 2025-10-18
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 16 ++++++++++++++++ data/austates.rda |binary data/shelling.rda |binary inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + 7 files changed, 28 insertions(+), 10 deletions(-)
Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that
should be familiar to experienced R users. Provides a wrapper for several
topic models that take similarly-formatted input and give similarly-formatted
output. Has additional functionality for analyzing and diagnostics for
topic models.
Author: Tommy Jones [aut, cre],
William Doane [ctb],
Mattias Attbom [ctb]
Maintainer: Tommy Jones <jones.thos.w@gmail.com>
Diff between textmineR versions 3.0.5 dated 2021-06-28 and 3.0.6 dated 2025-10-18
DESCRIPTION | 11 MD5 | 68 - NEWS.md | 17 R/other_utilities.R | 5 R/textmineR.R | 3 R/topic_modeling_core.R | 22 README.md | 10 build/vignette.rds |binary inst/doc/a_start_here.R | 33 inst/doc/a_start_here.Rmd | 3 inst/doc/a_start_here.html | 604 ++++++++++------- inst/doc/b_document_clustering.R | 27 inst/doc/b_document_clustering.Rmd | 11 inst/doc/b_document_clustering.html | 353 +++++----- inst/doc/c_topic_modeling.R | 21 inst/doc/c_topic_modeling.Rmd | 11 inst/doc/c_topic_modeling.html | 1245 ++++++++++++++++++++---------------- inst/doc/d_text_embeddings.R | 14 inst/doc/d_text_embeddings.Rmd | 10 inst/doc/d_text_embeddings.html | 622 ++++++++++------- inst/doc/e_doc_summarization.R | 241 +++--- inst/doc/e_doc_summarization.Rmd | 27 inst/doc/e_doc_summarization.html | 536 ++++++++------- inst/doc/f_tidytext_example.R | 11 inst/doc/f_tidytext_example.Rmd | 11 inst/doc/f_tidytext_example.html | 317 +++++---- man/nih.Rd | 5 man/textmineR.Rd | 19 src/RcppExports.cpp | 5 vignettes/a_start_here.Rmd | 3 vignettes/b_document_clustering.Rmd | 11 vignettes/c_topic_modeling.Rmd | 11 vignettes/d_text_embeddings.Rmd | 10 vignettes/e_doc_summarization.Rmd | 27 vignettes/f_tidytext_example.Rmd | 11 35 files changed, 2485 insertions(+), 1850 deletions(-)
Title: Kalman Filter
Description: 'Rcpp' implementation of the multivariate Kalman filter for state space models that can handle missing values and exogenous data in the observation and state equations. There is also a function to handle time varying parameters.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard [aut, cre]
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between kalmanfilter versions 2.1.1 dated 2024-03-07 and 2.2.0 dated 2025-10-18
kalmanfilter-2.1.1/kalmanfilter/man/Rginv.Rd |only kalmanfilter-2.1.1/kalmanfilter/man/contains.Rd |only kalmanfilter-2.1.1/kalmanfilter/man/gen_inv.Rd |only kalmanfilter-2.1.1/kalmanfilter/man/kalman_filter_cpp.Rd |only kalmanfilter-2.2.0/kalmanfilter/DESCRIPTION | 10 kalmanfilter-2.2.0/kalmanfilter/MD5 | 32 kalmanfilter-2.2.0/kalmanfilter/NEWS.md | 6 kalmanfilter-2.2.0/kalmanfilter/R/RcppExports.R | 61 kalmanfilter-2.2.0/kalmanfilter/build/partial.rdb |binary kalmanfilter-2.2.0/kalmanfilter/build/vignette.rds |binary kalmanfilter-2.2.0/kalmanfilter/inst/doc/kalmanfilter_vignette.R | 729 +++++----- kalmanfilter-2.2.0/kalmanfilter/inst/doc/kalmanfilter_vignette.Rmd | 3 kalmanfilter-2.2.0/kalmanfilter/inst/doc/kalmanfilter_vignette.html | 423 ++--- kalmanfilter-2.2.0/kalmanfilter/man/kalman_filter.Rd | 208 +- kalmanfilter-2.2.0/kalmanfilter/man/kalmanfilter-package.Rd | 30 kalmanfilter-2.2.0/kalmanfilter/man/sw_dcf.Rd | 48 kalmanfilter-2.2.0/kalmanfilter/man/treasuries.Rd | 42 kalmanfilter-2.2.0/kalmanfilter/src/kalmanfilter.cpp | 525 +++---- kalmanfilter-2.2.0/kalmanfilter/vignettes/kalmanfilter_vignette.Rmd | 3 19 files changed, 1033 insertions(+), 1087 deletions(-)
Title: Semi-Parametric Joint Modeling of Longitudinal and Survival Data
Description: Maximum likelihood estimation for the semi-parametric joint modeling of competing risks and (multivariate) longitudinal data applying customized linear scan algorithms, proposed by Li and colleagues (2022) <doi:10.1155/2022/1362913>.
The time-to-event data is modelled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal
outcome is modelled using a linear mixed effects model. The association is captured by shared random effects. The model
is estimated using an Expectation Maximization algorithm.
Author: Shanpeng Li [aut, cre],
Ning Li [ctb],
Hong Wang [ctb],
Jin Zhou [ctb],
Hua Zhou [ctb],
Gang Li [ctb]
Maintainer: Shanpeng Li <lishanpeng0913@ucla.edu>
Diff between FastJM versions 1.5.1 dated 2025-07-23 and 1.5.2 dated 2025-10-18
DESCRIPTION | 11 MD5 | 45 - NAMESPACE | 4 NEWS.md | 4 R/CIF1mv.CR.R | 8 R/CIF2mv.CR.R | 8 R/FastJM.R | 2 R/Pkmv.us.R | 8 R/estepMV_worker.R |only R/estepMV_workerSF.R |only R/getbSig.R | 32 R/getbSig_grad.R | 13 R/getbSig_gradSF.R | 11 R/getbsigSF.R | 11 R/logLikCRmv.R |only R/mvdiff.R | 26 R/mvdiffSF.R | 20 R/mvjmcs.R | 585 +++++----------- R/survfitmvjmcs.R |only README.md | 631 +++++++++--------- man/mvjmcs.Rd | 9 man/survfitmvjmcs.Rd |only src/getmvCov.cpp | 16 src/getmvCovSF.cpp | 20 src/nonmix.cpp | 1691 +++++++++++++++++++++++++------------------------ src/normalApproxSF.cpp | 409 +++++------ 26 files changed, 1747 insertions(+), 1817 deletions(-)
Title: Probabilistic Regression Trees
Description: Implementation of Probabilistic Regression Trees (PRTree),
providing functions for model fitting and prediction, with specific adaptations
to handle missing values. The main computations are implemented in 'Fortran'
for high efficiency. The package is based on the PRTree methodology described in
Alkhoury et al. (2020), "Smooth and Consistent Probabilistic Regression Trees"
<https://proceedings.neurips.cc/paper_files/paper/2020/file/8289889263db4a40463e3f358bb7c7a1-Paper.pdf>.
Details on the treatment of missing data and implementation aspects are presented in
Prass, T.S.; Neimaier, A.S.; Pumi, G. (2025), "Handling Missing Data in Probabilistic Regression Trees:
Methods and Implementation in R" <doi:10.48550/arXiv.2510.03634>.
Author: Alisson Silva Neimaier [aut] ,
Taiane Schaedler Prass [aut, ths, cre]
Maintainer: Taiane Schaedler Prass <taianeprass@gmail.com>
Diff between PRTree versions 1.0.0 dated 2025-10-09 and 1.0.1 dated 2025-10-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/prtree_main.R | 2 +- inst/news.md | 7 ++++++- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Breeding-Related Mixed-Effects Models
Description: Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between lme4breeding versions 1.0.80 dated 2025-09-22 and 1.0.90 dated 2025-10-18
lme4breeding-1.0.80/lme4breeding/man/fillData.Rd |only lme4breeding-1.0.90/lme4breeding/ChangeLog | 15 lme4breeding-1.0.90/lme4breeding/DESCRIPTION | 8 lme4breeding-1.0.90/lme4breeding/MD5 | 82 lme4breeding-1.0.90/lme4breeding/NAMESPACE | 11 lme4breeding-1.0.90/lme4breeding/R/lmebreed.R | 420 +++- lme4breeding-1.0.90/lme4breeding/R/utils.R | 185 +- lme4breeding-1.0.90/lme4breeding/build/vignette.rds |binary lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.gxe.R | 178 +- lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.gxe.Rmd | 215 +- lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.gxe.html | 624 +++---- lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.qg.R | 59 lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.qg.Rmd | 79 lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.qg.html | 854 ++++------ lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.summaries.R |only lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.summaries.Rmd |only lme4breeding-1.0.90/lme4breeding/inst/doc/lmebreed.summaries.html |only lme4breeding-1.0.90/lme4breeding/man/DT_augment.Rd | 13 lme4breeding-1.0.90/lme4breeding/man/DT_big.Rd | 16 lme4breeding-1.0.90/lme4breeding/man/DT_btdata.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_cornhybrids.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_cpdata.Rd | 8 lme4breeding-1.0.90/lme4breeding/man/DT_example.Rd | 29 lme4breeding-1.0.90/lme4breeding/man/DT_expdesigns.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_fulldiallel.Rd | 8 lme4breeding-1.0.90/lme4breeding/man/DT_gryphon.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_h2.Rd | 21 lme4breeding-1.0.90/lme4breeding/man/DT_halfdiallel.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_ige.Rd | 5 lme4breeding-1.0.90/lme4breeding/man/DT_legendre.Rd | 17 lme4breeding-1.0.90/lme4breeding/man/DT_mohring.Rd | 3 lme4breeding-1.0.90/lme4breeding/man/DT_polyploid.Rd | 7 lme4breeding-1.0.90/lme4breeding/man/DT_rice.Rd | 11 lme4breeding-1.0.90/lme4breeding/man/DT_sleepstudy.Rd | 8 lme4breeding-1.0.90/lme4breeding/man/DT_technow.Rd | 6 lme4breeding-1.0.90/lme4breeding/man/DT_wheat.Rd | 24 lme4breeding-1.0.90/lme4breeding/man/DT_yatesoats.Rd | 14 lme4breeding-1.0.90/lme4breeding/man/Dtable.Rd |only lme4breeding-1.0.90/lme4breeding/man/getCi.Rd |only lme4breeding-1.0.90/lme4breeding/man/lme4breeding-package.Rd | 90 - lme4breeding-1.0.90/lme4breeding/man/lmebreed-class.Rd | 52 lme4breeding-1.0.90/lme4breeding/man/lmebreed.Rd | 104 - lme4breeding-1.0.90/lme4breeding/man/mkMmeIndex.Rd |only lme4breeding-1.0.90/lme4breeding/vignettes/lmebreed.gxe.Rmd | 215 +- lme4breeding-1.0.90/lme4breeding/vignettes/lmebreed.qg.Rmd | 79 lme4breeding-1.0.90/lme4breeding/vignettes/lmebreed.summaries.Rmd |only 46 files changed, 1923 insertions(+), 1567 deletions(-)
Title: Create Color-Coded Choropleth Maps in R
Description: Easily create color-coded (choropleth) maps in R. No knowledge of
cartography or shapefiles needed; go directly from your geographically
identified data to a highly customizable map with a single line of code!
Supported geographies: U.S. states, counties, census tracts, and zip codes,
world countries and sub-country regions (e.g., provinces, prefectures, etc.).
Author: Ari Lamstein [aut],
Zhaochen He [ctb, cre],
Brian Johnson [ctb],
Trulia, Inc. [cph]
Maintainer: Zhaochen He <zhaochen.he@cnu.edu>
Diff between choroplethr versions 5.0.0 dated 2025-06-26 and 5.0.1 dated 2025-10-18
choroplethr-5.0.0/choroplethr/R/get_usa_demographics.R |only choroplethr-5.0.0/choroplethr/data/congress116.regions.rdata |only choroplethr-5.0.0/choroplethr/data/continental_us_states.rdata |only choroplethr-5.0.0/choroplethr/data/df_congress116_demographics.rdata |only choroplethr-5.0.0/choroplethr/data/df_congress116_party.rdata |only choroplethr-5.0.0/choroplethr/data/df_pop_country.rdata |only choroplethr-5.0.0/choroplethr/data/df_pop_county.rdata |only choroplethr-5.0.0/choroplethr/data/df_pop_ny_tract.rdata |only choroplethr-5.0.0/choroplethr/data/df_pop_state.rdata |only choroplethr-5.0.0/choroplethr/data/df_president_ts.rdata |only choroplethr-5.0.0/choroplethr/data/df_state_age_2010.rdata |only choroplethr-5.0.0/choroplethr/data/df_state_age_2015.rdata |only choroplethr-5.0.0/choroplethr/man/congress116.regions.Rd |only choroplethr-5.0.0/choroplethr/man/continental_us_states.Rd |only choroplethr-5.0.0/choroplethr/man/df_congress116_demographics.Rd |only choroplethr-5.0.0/choroplethr/man/df_congress116_party.Rd |only choroplethr-5.0.0/choroplethr/man/df_pop_country.Rd |only choroplethr-5.0.0/choroplethr/man/df_pop_county.Rd |only choroplethr-5.0.0/choroplethr/man/df_pop_ny_tract.Rd |only choroplethr-5.0.0/choroplethr/man/df_pop_state.Rd |only choroplethr-5.0.0/choroplethr/man/df_president_ts.Rd |only choroplethr-5.0.0/choroplethr/man/df_state_age_2010.Rd |only choroplethr-5.0.0/choroplethr/man/df_state_age_2015.Rd |only choroplethr-5.0.0/choroplethr/man/get_admin1_map.Rd |only choroplethr-5.0.0/choroplethr/man/get_county_demographics.Rd |only choroplethr-5.0.0/choroplethr/man/get_state_demographics.Rd |only choroplethr-5.0.0/choroplethr/man/get_tract_demographics.Rd |only choroplethr-5.0.1/choroplethr/DESCRIPTION | 28 choroplethr-5.0.1/choroplethr/LICENSE | 4 choroplethr-5.0.1/choroplethr/MD5 | 164 - choroplethr-5.0.1/choroplethr/NAMESPACE | 76 choroplethr-5.0.1/choroplethr/NEWS.md | 22 choroplethr-5.0.1/choroplethr/R/acs.R | 355 +-- choroplethr-5.0.1/choroplethr/R/admin1.R | 251 +- choroplethr-5.0.1/choroplethr/R/choropleth.R | 973 ++++------ choroplethr-5.0.1/choroplethr/R/country.R | 249 +- choroplethr-5.0.1/choroplethr/R/county.R | 237 +- choroplethr-5.0.1/choroplethr/R/data.R | 474 +--- choroplethr-5.0.1/choroplethr/R/init.R | 4 choroplethr-5.0.1/choroplethr/R/internal-docs.R | 133 - choroplethr-5.0.1/choroplethr/R/state.R | 221 +- choroplethr-5.0.1/choroplethr/R/tract.R | 212 +- choroplethr-5.0.1/choroplethr/R/zip.R |only choroplethr-5.0.1/choroplethr/README.md | 283 +- choroplethr-5.0.1/choroplethr/data/admin1.map.rda |only choroplethr-5.0.1/choroplethr/data/admin1.regions.rda |only choroplethr-5.0.1/choroplethr/data/country.map.rda |binary choroplethr-5.0.1/choroplethr/data/country.regions.rda |binary choroplethr-5.0.1/choroplethr/data/county.map.2015.rda |binary choroplethr-5.0.1/choroplethr/data/county.map.2024.rda |binary choroplethr-5.0.1/choroplethr/data/county.regions.2015.rda |binary choroplethr-5.0.1/choroplethr/data/county.regions.2024.rda |binary choroplethr-5.0.1/choroplethr/data/df_country_demographics.rda |binary choroplethr-5.0.1/choroplethr/data/df_county_demographics.rda |binary choroplethr-5.0.1/choroplethr/data/df_ny_tract_demographics.rda |binary choroplethr-5.0.1/choroplethr/data/df_ri_zip_demographics.rda |only choroplethr-5.0.1/choroplethr/data/df_state_demographics.rda |binary choroplethr-5.0.1/choroplethr/data/state.map.bigdc.rda |binary choroplethr-5.0.1/choroplethr/data/state.map.hex.rda |binary choroplethr-5.0.1/choroplethr/data/state.map.hires.rda |binary choroplethr-5.0.1/choroplethr/data/state.map.lores.rda |binary choroplethr-5.0.1/choroplethr/data/state.regions.rda |binary choroplethr-5.0.1/choroplethr/data/zip_lookup.rda |only choroplethr-5.0.1/choroplethr/man/Choropleth.Rd | 264 +- choroplethr-5.0.1/choroplethr/man/admin1.map.Rd |only choroplethr-5.0.1/choroplethr/man/admin1.regions.Rd |only choroplethr-5.0.1/choroplethr/man/admin1_choropleth.Rd | 358 +-- choroplethr-5.0.1/choroplethr/man/common_args.Rd | 251 +- choroplethr-5.0.1/choroplethr/man/country.map.Rd | 32 choroplethr-5.0.1/choroplethr/man/country.regions.Rd | 24 choroplethr-5.0.1/choroplethr/man/country_choropleth.Rd | 352 +-- choroplethr-5.0.1/choroplethr/man/county.map.2015.Rd | 30 choroplethr-5.0.1/choroplethr/man/county.map.2024.Rd | 30 choroplethr-5.0.1/choroplethr/man/county.regions.2015.Rd | 24 choroplethr-5.0.1/choroplethr/man/county.regions.2024.Rd | 24 choroplethr-5.0.1/choroplethr/man/county_choropleth.Rd | 310 +-- choroplethr-5.0.1/choroplethr/man/county_choropleth_acs.Rd | 105 - choroplethr-5.0.1/choroplethr/man/df_country_demographics.Rd | 34 choroplethr-5.0.1/choroplethr/man/df_county_demographics.Rd | 36 choroplethr-5.0.1/choroplethr/man/df_japan_census.Rd | 35 choroplethr-5.0.1/choroplethr/man/df_ny_tract_demographics.Rd | 36 choroplethr-5.0.1/choroplethr/man/df_president.Rd | 40 choroplethr-5.0.1/choroplethr/man/df_ri_zip_demographics.Rd |only choroplethr-5.0.1/choroplethr/man/df_state_demographics.Rd | 36 choroplethr-5.0.1/choroplethr/man/get_acs_data.Rd | 82 choroplethr-5.0.1/choroplethr/man/get_tract_map.Rd | 39 choroplethr-5.0.1/choroplethr/man/get_zip_map.Rd |only choroplethr-5.0.1/choroplethr/man/state.map.bigdc.Rd | 24 choroplethr-5.0.1/choroplethr/man/state.map.hex.Rd | 30 choroplethr-5.0.1/choroplethr/man/state.map.hires.Rd | 2 choroplethr-5.0.1/choroplethr/man/state.map.lores.Rd | 30 choroplethr-5.0.1/choroplethr/man/state.regions.Rd | 24 choroplethr-5.0.1/choroplethr/man/state_choropleth.Rd | 354 +-- choroplethr-5.0.1/choroplethr/man/state_choropleth_acs.Rd | 108 - choroplethr-5.0.1/choroplethr/man/tract_choropleth.Rd | 305 +-- choroplethr-5.0.1/choroplethr/man/zip_choropleth.Rd |only choroplethr-5.0.1/choroplethr/man/zip_lookup.Rd |only choroplethr-5.0.1/choroplethr/tests/testthat.R | 24 choroplethr-5.0.1/choroplethr/tests/testthat/superceeded/test_legacy.R | 492 ++--- choroplethr-5.0.1/choroplethr/tests/testthat/test-core.R | 98 - choroplethr-5.0.1/choroplethr/tests/testthat/test-country.R | 48 choroplethr-5.0.1/choroplethr/tests/testthat/test-county.R | 44 102 files changed, 3678 insertions(+), 3733 deletions(-)