Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason [aut, cre]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.6.6 dated 2025-01-15 and 1.7.0 dated 2025-10-22
echarty-1.6.6/echarty/tests/testthat/sl.shape.points |only echarty-1.7.0/echarty/DESCRIPTION | 10 echarty-1.7.0/echarty/MD5 | 77 - echarty-1.7.0/echarty/NAMESPACE | 2 echarty-1.7.0/echarty/NEWS.md | 23 echarty-1.7.0/echarty/R/echarty.R | 892 +++++++---- echarty-1.7.0/echarty/R/util.R | 622 +++++--- echarty-1.7.0/echarty/build/vignette.rds |binary echarty-1.7.0/echarty/demo/coder.R | 5 echarty-1.7.0/echarty/demo/eshiny.R | 1 echarty-1.7.0/echarty/demo/examples.R | 1368 +++++++++++------- echarty-1.7.0/echarty/demo/js2r.R | 5 echarty-1.7.0/echarty/inst/doc/echarty.Rmd | 83 - echarty-1.7.0/echarty/inst/doc/echarty.html | 95 - echarty-1.7.0/echarty/inst/htmlwidgets/echarty.js | 134 - echarty-1.7.0/echarty/inst/js/echarts.min.js | 4 echarty-1.7.0/echarty/inst/js/renderers.js | 114 + echarty-1.7.0/echarty/man/Introduction.Rd | 259 +-- echarty-1.7.0/echarty/man/ec.clmn.Rd | 13 echarty-1.7.0/echarty/man/ec.data.Rd | 23 echarty-1.7.0/echarty/man/ec.fromJson.Rd | 8 echarty-1.7.0/echarty/man/ec.init.Rd | 64 echarty-1.7.0/echarty/man/ec.inspect.Rd | 6 echarty-1.7.0/echarty/man/ec.paxis.Rd | 6 echarty-1.7.0/echarty/man/ec.plugjs.Rd | 3 echarty-1.7.0/echarty/man/ec.registerMap.Rd |only echarty-1.7.0/echarty/man/ec.theme.Rd | 6 echarty-1.7.0/echarty/man/ec.upd.Rd | 18 echarty-1.7.0/echarty/man/ec.util.Rd | 156 -- echarty-1.7.0/echarty/man/ecr.band.Rd | 10 echarty-1.7.0/echarty/man/ecr.ebars.Rd | 10 echarty-1.7.0/echarty/tests/testthat.R | 1 echarty-1.7.0/echarty/tests/testthat/test-ec.clmn.R | 24 echarty-1.7.0/echarty/tests/testthat/test-ec.util.R | 181 +- echarty-1.7.0/echarty/tests/testthat/test-other.R | 140 + echarty-1.7.0/echarty/tests/testthat/test-presets.R | 181 +- echarty-1.7.0/echarty/tests/testthat/test-renderers.R | 78 - echarty-1.7.0/echarty/vignettes/echarty.Rmd | 83 - 38 files changed, 2931 insertions(+), 1774 deletions(-)
Title: Bayesian Estimation of Probit Unfolding Models for Binary
Preference Data
Description: Bayesian estimation and analysis methods for Probit Unfolding Models (PUMs), a novel class of scaling models designed for binary preference data. These models allow for both monotonic and non-monotonic response functions. The package supports Bayesian inference for both static and dynamic PUMs using Markov chain Monte Carlo (MCMC) algorithms with minimal or no tuning. Key functionalities include posterior sampling, hyperparameter selection, data preprocessing, model fit evaluation, and visualization. The methods are particularly suited to analyzing voting data, such as from the U.S. Congress or Supreme Court, but can also be applied in other contexts where non-monotonic responses are expected. For methodological details, see Shi et al. (2025) <doi:10.48550/arXiv.2504.00423>.
Author: Skylar Shi [aut, cre] ,
Abel Rodriguez [aut] ,
Rayleigh Lei [aut] ,
Jonathan Olmsted [cph]
Maintainer: Skylar Shi <dshi98@uw.edu>
Diff between pumBayes versions 1.0.0 dated 2025-05-30 and 1.0.1 dated 2025-10-22
DESCRIPTION | 8 MD5 | 38 - R/RcppExports.R | 70 +- R/calc_waic.R | 334 ++++++------- R/dtnorm.R | 58 +- R/h116.R | 92 +-- R/item_char.R | 122 ++-- R/post_rank.R | 86 +-- R/predict_ideal.R | 194 +++---- R/predict_irt.R | 230 ++++----- R/predict_pum.R | 244 ++++----- R/preprocess_rollcall.R | 354 +++++++------- R/sample_pum_dynamic.R | 650 +++++++++++++------------- R/sample_pum_static.R | 506 ++++++++++---------- R/scotus.1937.2021.R | 68 +- R/tune_hyper.R | 130 ++--- R/utils.R | 6 README.md | 43 + man/preprocess_rollcall.Rd | 70 +- src/three_utility_probit_helper_functions.cpp | 14 20 files changed, 1662 insertions(+), 1655 deletions(-)
Title: A Comprehensive Toolkit for Clinical HLA Informatics
Description: A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author: Nicholas Brown [cre, aut] ,
Busra Coskun [aut]
Maintainer: Nicholas Brown <nicholas.brown@pennmedicine.upenn.edu>
Diff between immunogenetr versions 1.0.0 dated 2025-08-19 and 1.0.1 dated 2025-10-22
DESCRIPTION | 8 +- MD5 | 14 ++--- NEWS.md | 6 +- R/HLA_mismatch_base.R | 42 +++++++++++++-- R/HLA_truncate.R | 5 + README.md | 9 ++- man/HLA_truncate.Rd | 5 + tests/testthat/test-HLA_mismatch_base.R | 88 ++++++++++++++++++++++++++++++++ 8 files changed, 158 insertions(+), 19 deletions(-)
Title: Automatic Univariate Time Series Modelling of many Kinds
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
time series models of many kinds.
Harvey AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Gómez V, Maravall A (2000) <doi:10.1002/9781118032978>.
Pedregal DJ, Trapero JR and Holgado E (2024) <doi:10.1016/j.ijforecast.2023.09.004>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 5.1.2 dated 2025-10-21 and 5.1.4 dated 2025-10-22
ChangeLog | 2 +- DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/ARIMAmodel.h | 4 ++-- src/UCompC.cpp | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Extracts and summarizes metadata from data frames, including variable names, labels, types, and missing values. Computes compact descriptive statistics, frequency tables, and cross-tabulations to assist with efficient data exploration. Includes an interactive and exportable codebook generator for documenting variable metadata. Facilitates the identification of missing data patterns and structural issues in datasets. Designed to streamline initial data management and exploratory analysis workflows within 'R'.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.2.1 dated 2025-10-04 and 0.3.0 dated 2025-10-22
DESCRIPTION | 12 MD5 | 27 - NAMESPACE | 3 NEWS.md | 26 - R/code_book.R |only R/copy_clipboard.R | 277 +++++----- R/count_n.R | 34 - R/cross_tab.R | 847 ++++++++++++++++----------------- R/freq.R | 539 ++++++++++----------- R/varlist.R | 721 ++++++++++++++-------------- README.md | 9 man/code_book.Rd |only man/spicy-package.Rd | 2 tests/testthat/test-code_book.R |only tests/testthat/test-count_n.R | 1 tests/testthat/test-label_from_names.R | 58 +- 16 files changed, 1300 insertions(+), 1256 deletions(-)
Title: Bootstrapping for Propensity Score Analysis
Description: It is often advantageous to test a hypothesis more than once
in the context of propensity score analysis (Rosenbaum, 2012)
<doi:10.1093/biomet/ass032>. The functions in this package facilitate
bootstrapping for propensity score analysis (PSA). By default,
bootstrapping using two classification tree methods (using 'rpart' and
'ctree' functions), two matching methods (using 'Matching' and
'MatchIt' packages), and stratification with logistic regression. A
framework is described for users to implement additional propensity
score methods. Visualizations are emphasized for diagnosing balance;
exploring the correlation relationships between bootstrap samples and
methods; and to summarize results.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between PSAboot versions 1.3.8 dated 2023-10-23 and 1.3.9 dated 2025-10-22
PSAboot-1.3.8/PSAboot/man/getPSAbootMethods.Rd |only PSAboot-1.3.9/PSAboot/DESCRIPTION | 14 - PSAboot-1.3.9/PSAboot/MD5 | 99 ++++++-------- PSAboot-1.3.9/PSAboot/NEWS.md | 4 PSAboot-1.3.9/PSAboot/R/PSAboot-package.R | 3 PSAboot-1.3.9/PSAboot/R/PSAboot.R | 26 ++- PSAboot-1.3.9/PSAboot/R/balance.R | 6 PSAboot-1.3.9/PSAboot/R/balance.boxplot.R | 4 PSAboot-1.3.9/PSAboot/R/balance.matching.R | 2 PSAboot-1.3.9/PSAboot/R/balance.plot.R | 2 PSAboot-1.3.9/PSAboot/R/balance.print.R | 2 PSAboot-1.3.9/PSAboot/R/boot.matching.R | 4 PSAboot-1.3.9/PSAboot/R/boot.strata.R | 4 PSAboot-1.3.9/PSAboot/R/boot.weighting.R | 6 PSAboot-1.3.9/PSAboot/R/boxplot.PSAboot.R | 2 PSAboot-1.3.9/PSAboot/R/hist.PSAboot.R | 4 PSAboot-1.3.9/PSAboot/R/plot.PSAboot.R | 2 PSAboot-1.3.9/PSAboot/R/plot.PSAboot.matrix.R | 2 PSAboot-1.3.9/PSAboot/R/print.PSAboot.R | 2 PSAboot-1.3.9/PSAboot/R/quantiles.R | 4 PSAboot-1.3.9/PSAboot/R/summary.PSAboot.R | 6 PSAboot-1.3.9/PSAboot/build/vignette.rds |binary PSAboot-1.3.9/PSAboot/inst/doc/MatchingOrder.html | 12 - PSAboot-1.3.9/PSAboot/inst/doc/PSAboot.R | 2 PSAboot-1.3.9/PSAboot/inst/doc/PSAboot.Rmd | 8 - PSAboot-1.3.9/PSAboot/inst/doc/PSAboot.html | 74 ++-------- PSAboot-1.3.9/PSAboot/man/PSAboot-package.Rd | 12 + PSAboot-1.3.9/PSAboot/man/PSAboot.Rd | 19 ++ PSAboot-1.3.9/PSAboot/man/as.data.frame.PSAbootSummary.Rd | 2 PSAboot-1.3.9/PSAboot/man/balance.Rd | 6 PSAboot-1.3.9/PSAboot/man/balance.matching.Rd | 2 PSAboot-1.3.9/PSAboot/man/boot.ctree.Rd | 4 PSAboot-1.3.9/PSAboot/man/boot.matching.Rd | 6 PSAboot-1.3.9/PSAboot/man/boot.matchit.Rd | 4 PSAboot-1.3.9/PSAboot/man/boot.rpart.Rd | 4 PSAboot-1.3.9/PSAboot/man/boot.strata.Rd | 4 PSAboot-1.3.9/PSAboot/man/boot.weighting.Rd | 4 PSAboot-1.3.9/PSAboot/man/boxplot.PSAboot.Rd | 2 PSAboot-1.3.9/PSAboot/man/boxplot.PSAboot.balance.Rd | 4 PSAboot-1.3.9/PSAboot/man/calculate_ps_weights.Rd | 6 PSAboot-1.3.9/PSAboot/man/hist.PSAboot.Rd | 4 PSAboot-1.3.9/PSAboot/man/matrixplot.Rd | 2 PSAboot-1.3.9/PSAboot/man/plot.PSAboot.Rd | 2 PSAboot-1.3.9/PSAboot/man/plot.PSAboot.balance.Rd | 2 PSAboot-1.3.9/PSAboot/man/print.PSAboot.Rd | 2 PSAboot-1.3.9/PSAboot/man/print.PSAboot.balance.Rd | 2 PSAboot-1.3.9/PSAboot/man/print.PSAbootSummary.Rd | 2 PSAboot-1.3.9/PSAboot/man/q25.Rd | 2 PSAboot-1.3.9/PSAboot/man/q75.Rd | 2 PSAboot-1.3.9/PSAboot/man/summary.PSAboot.Rd | 2 PSAboot-1.3.9/PSAboot/vignettes/PSAboot.Rmd | 8 - 51 files changed, 196 insertions(+), 207 deletions(-)
Title: Optimizing Acoustic Signal Detection
Description: Facilitates the automatic detection of acoustic signals,
providing functions to diagnose and optimize the performance of detection
routines. Detections from other software can also be explored and optimized.
This package has been peer-reviewed by rOpenSci.
Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
Author: Marcelo Araya-Salas [aut, cre] ,
Alec L. Robitaille [rev] ,
Sam Lapp [rev]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
This is a re-admission after prior archival of version 1.0.3 dated 2025-07-22
Diff between ohun versions 1.0.3 dated 2025-07-22 and 1.0.4 dated 2025-10-22
DESCRIPTION | 6 +- MD5 | 32 ++++++------ NEWS.md | 7 ++ R/energy_detector.R | 18 ++++++- R/internal_functions.R | 7 ++ R/reassemble_detection.R | 8 +-- R/split_acoustic_data.R | 12 +++- build/vignette.rds |binary data/lbh1.rda |binary data/lbh2.rda |binary data/lbh_reference.rda |binary inst/doc/energy_based_detection.html | 83 ++++++++++++++++----------------- inst/doc/intro_to_ohun.html | 76 +++++++++++++++--------------- inst/doc/template_based_detection.html | 74 ++++++++++++++--------------- man/energy_detector.Rd | 4 - man/reassemble_detection.Rd | 8 +-- man/split_acoustic_data.Rd | 8 ++- 17 files changed, 192 insertions(+), 151 deletions(-)
Title: Hidden Markov Cognitive Diagnosis Models for Learning
Description: Fitting hidden Markov models of learning under the cognitive diagnosis framework.
The estimation of the hidden Markov diagnostic classification model,
the first order hidden Markov model, the reduced-reparameterized unified learning model,
and the joint learning model for responses and response times.
Author: Susu Zhang [aut],
Shiyu Wang [aut],
Yinghan Chen [aut],
Sunbeom Kwon [aut, cre]
Maintainer: Sunbeom Kwon <sunbeom2@illinois.edu>
Diff between hmcdm versions 2.1.1 dated 2023-03-19 and 2.1.2 dated 2025-10-22
DESCRIPTION | 6 MD5 | 36 +- NEWS.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/DINA_FOHM.R | 2 inst/doc/DINA_FOHM.html | 257 ++++++++++---------- inst/doc/DINA_HO_RT_joint.R | 2 inst/doc/DINA_HO_RT_joint.html | 525 ++++++++++++++++++++--------------------- inst/doc/DINA_HO_RT_sep.R | 2 inst/doc/DINA_HO_RT_sep.html | 341 +++++++++++++------------- inst/doc/HMDCM.R | 2 inst/doc/HMDCM.html | 503 +++++++++++++++++++-------------------- inst/doc/NIDA_indept.R | 2 inst/doc/NIDA_indept.html | 287 +++++++++++----------- inst/doc/rRUM_indept.R | 2 inst/doc/rRUM_indept.html | 318 ++++++++++++------------ src/basic_functions.cpp | 2 src/mcmc_functions.cpp | 14 - 19 files changed, 1164 insertions(+), 1143 deletions(-)
Title: Vegetation Patterns
Description: Find, visualize and explore patterns of differential taxa in
vegetation data (namely in a phytosociological table), using the
Differential Value (DiffVal). Patterns are searched through
mathematical optimization algorithms. Ultimately, Total Differential
Value (TDV) optimization aims at obtaining classifications of
vegetation data based on differential taxa, as in the traditional
geobotanical approach (Monteiro-Henriques 2025,
<doi:10.3897/VCS.140466>). The Gurobi optimizer, as well
as the R package 'gurobi', can be installed from
<https://www.gurobi.com/products/gurobi-optimizer/>. The useful
vignette Gurobi Installation Guide, from package 'prioritizr', can be
found here:
<https://prioritizr.net/articles/gurobi_installation_guide.html>.
Author: Tiago Monteiro-Henriques [aut, cre] ,
Jorge Orestes Cerdeira [aut] ,
Fundacao para a Ciencia e a Tecnologia, Portugal [fnd]
Maintainer: Tiago Monteiro-Henriques <tmh.dev@icloud.com>
Diff between diffval versions 1.1.0 dated 2023-03-09 and 1.2.0 dated 2025-10-22
DESCRIPTION | 22 +++++---- MD5 | 38 ++++++++-------- NAMESPACE | 1 NEWS.md | 22 ++++++--- R/bigdata_tdv.R | 7 +- R/internal_assignment.R |only R/optim_tdv_gurobi_k_2.R | 103 ++++++++++++++++++++++---------------------- R/optim_tdv_hill_climb.R | 69 +++++++++++++++++------------ R/optim_tdv_simul_anne.R | 26 ++++++----- R/tabulation.R | 19 +++++--- R/tdv.R | 14 ++++- R/utils.R | 55 +++++++++++------------ README.md | 64 +++++++++++++++++++++------ build/partial.rdb |binary man/bigdata_tdv.Rd | 4 - man/diffval-package.Rd | 4 - man/internal_assignment.Rd |only man/optim_tdv_gurobi_k_2.Rd | 4 - man/optim_tdv_hill_climb.Rd | 59 +++++++++++++++---------- man/optim_tdv_simul_anne.Rd | 16 +++--- man/tdv.Rd | 14 ++++- 21 files changed, 321 insertions(+), 220 deletions(-)
Title: Estimating Climate Representativeness
Description: Offers tools to estimate the climate representativeness of reference polygons and quantifies its transformation under future climate change scenarios. Approaches described in Mingarro and Lobo (2018) <doi:10.32800/abc.2018.41.0333> and Mingarro and Lobo (2022) <doi:10.1017/S037689292100014X>.
Author: Mario Mingarro [aut, cre] ,
Gabriel del Barrio [ctb] ,
Jorge M. Lobo [ctb]
Maintainer: Mario Mingarro <mario_mingarro@mncn.csic.es>
Diff between ClimaRep versions 0.7 dated 2025-08-24 and 1.0 dated 2025-10-22
DESCRIPTION | 35 ++++++---- MD5 | 22 +++--- R/mh_rep.R | 2 R/mh_rep_ch.R | 24 ++---- R/rep_overlay.R | 26 +++---- R/vif_filter.R | 48 ++++++------- README.md | 166 ++++++++++++++++++++++++------------------------ man/ClimaRep-package.Rd | 10 ++ man/figures/F_9.jpeg |binary man/mh_rep_ch.Rd | 10 +- man/rep_overlay.Rd | 18 ++--- man/vif_filter.Rd | 4 - 12 files changed, 191 insertions(+), 174 deletions(-)
Title: Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data
Description: Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.
Author: Lisa Bramer [aut, cre],
Kelly Stratton [aut],
Daniel Claborne [aut],
Evan Glasscock [ctb],
Rachel Richardson [ctb],
David Degnan [ctb],
Evan Martin [ctb]
Maintainer: Lisa Bramer <lisa.bramer@pnnl.gov>
Diff between pmartR versions 2.5.0 dated 2025-04-23 and 2.5.1 dated 2025-10-22
pmartR-2.5.0/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt.svg |only pmartR-2.5.1/pmartR/DESCRIPTION | 8 pmartR-2.5.1/pmartR/MD5 | 85 pmartR-2.5.1/pmartR/R/imd_anova.R | 26 pmartR-2.5.1/pmartR/R/plot_fns.R | 1107 +++++----- pmartR-2.5.1/pmartR/man/plot-naRes.Rd | 5 pmartR-2.5.1/pmartR/man/plot-rmdFilt.Rd | 23 pmartR-2.5.1/pmartR/man/plot.statRes.Rd | 11 pmartR-2.5.1/pmartR/man/statres_histogram.Rd |only pmartR-2.5.1/pmartR/src/Makevars | 1 pmartR-2.5.1/pmartR/src/Makevars.win | 1 pmartR-2.5.1/pmartR/src/imd_anova.cpp | 10 pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-color-g.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-color-gp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-color-gs.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-color-gsp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-color-hist-g.svg |only 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pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-legend-g.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-legend-gp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-legend-gs.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-legend-gsp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-legend-p.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-hist-p.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-legend-g.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-legend-gp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-legend-gs.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-legend-gsp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-legend-p.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-p.svg |only 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pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-sample-legend-gs.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-sample-legend-gsp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-sample-legend-p.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-sampleg.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-samplegp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-samplegs.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-samplegsp.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-rmdfilt-samplep.svg |only pmartR-2.5.1/pmartR/tests/testthat/_snaps/plots/plot-statres-histogram.svg |only pmartR-2.5.1/pmartR/tests/testthat/test_imd_anova.R | 45 pmartR-2.5.1/pmartR/tests/testthat/test_plots.R | 52 75 files changed, 836 insertions(+), 538 deletions(-)
Title: MAnifold-Constrained Gaussian Process Inference
Description: Provides fast and accurate inference for the parameter estimation problem in Ordinary Differential
Equations, including the case when there are unobserved system components. Implements the MAGI method
(MAnifold-constrained Gaussian process Inference) of Yang, Wong, and Kou (2021) <doi:10.1073/pnas.2020397118>.
A user guide is provided by the accompanying software paper Wong, Yang, and Kou (2024) <doi:10.18637/jss.v109.i04>.
Author: Shihao Yang [aut, cre] ,
Samuel W.K. Wong [aut] ,
S.C. Kou [ctb, cph]
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>
Diff between magi versions 1.2.4 dated 2024-06-22 and 1.2.5 dated 2025-10-22
DESCRIPTION | 14 MD5 | 12 build/partial.rdb |binary build/vignette.rds |binary inst/doc/magi-vignette.R | 408 -------------- inst/doc/magi-vignette.html | 1273 +++++++++++++++++++++++++------------------- src/hmc.cpp | 4 7 files changed, 760 insertions(+), 951 deletions(-)
Title: Animated Interactive Grammar of Graphics
Description: Functions are provided for defining animated,
interactive data visualizations in R code, and rendering
on a web page. The 2018 Journal of Computational and
Graphical Statistics paper,
<doi:10.1080/10618600.2018.1513367>
describes the concepts implemented.
Author: Toby Hocking [aut, cre] ,
Biplab Sutradhar [ctb] ,
Hadley Wickham [aut] ,
Winston Chang [aut] ,
RStudio [cph] ,
Nicholas Lewin-Koh [aut] ,
Martin Maechler [aut] ,
Randall Prium [aut] ,
Susan VanderPlas [aut] ,
Carson Sievert [aut] ,
Kevin Ferris [aut [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between animint2 versions 2025.9.16 dated 2025-09-22 and 2025.10.17 dated 2025-10-22
animint2-2025.10.17/animint2/DESCRIPTION | 14 animint2-2025.10.17/animint2/MD5 | 57 animint2-2025.10.17/animint2/NEWS.md | 30 animint2-2025.10.17/animint2/R/geom-.r | 47 animint2-2025.10.17/animint2/R/geom-text.r | 2 animint2-2025.10.17/animint2/R/utilities.r | 2 animint2-2025.10.17/animint2/R/uu_zzz.r | 6 animint2-2025.10.17/animint2/R/z_animint.R | 56 animint2-2025.10.17/animint2/R/z_animintHelpers.R | 249 -- animint2-2025.10.17/animint2/R/z_knitr.R | 53 animint2-2025.10.17/animint2/R/z_pages.R | 39 animint2-2025.10.17/animint2/R/z_print.R | 2 animint2-2025.10.17/animint2/build/partial.rdb |binary animint2-2025.10.17/animint2/inst/htmljs/animint.js | 891 +++++----- animint2-2025.10.17/animint2/man/animint.Rd | 2 animint2-2025.10.17/animint2/man/animint2dir.Rd | 16 animint2-2025.10.17/animint2/man/animint2pages.Rd | 9 animint2-2025.10.17/animint2/man/knit_print.animint.Rd | 4 animint2-2025.10.17/animint2/tests/testthat/test-compiler-guides.R | 14 animint2-2025.10.17/animint2/tests/testthat/test-compiler-save-separate-chunks.R | 90 - animint2-2025.10.17/animint2/tests/testthat/test-renderer1-chunk-WorldBank-NA.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer1-chunk-tooltip.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer1-chunk-vars.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer1-geom-label-aligned.R | 8 animint2-2025.10.17/animint2/tests/testthat/test-renderer2-chunk-showSelected-same.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer3-chunk-NA-separate-lines.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer3-knit-print-pdf.R |only animint2-2025.10.17/animint2/tests/testthat/test-renderer3-knit-print.R | 6 animint2-2025.10.17/animint2/tests/testthat/test-renderer3-path-key.R | 32 animint2-2025.9.16/animint2/man/colsNotToCopy.Rd |only animint2-2025.9.16/animint2/tests/testthat/pids.txt |only animint2-2025.9.16/animint2/tests/testthat/test-renderer1-WorldBank-NA.R |only animint2-2025.9.16/animint2/tests/testthat/test-renderer1-tooltip.R |only animint2-2025.9.16/animint2/tests/testthat/test-renderer2-showSelected-same.R |only animint2-2025.9.16/animint2/tests/testthat/test-renderer3-NA-separate-lines.R |only animint2-2025.9.16/animint2/tests/testthat/testthat-problems.rds |only 36 files changed, 742 insertions(+), 887 deletions(-)
Title: The Phoenix Pediatric Sepsis and Septic Shock Criteria
Description: Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as
described in "Development and Validation of the Phoenix Criteria for
Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt,
Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto
and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr.
Russell contributed equally to the manuscript), "International Consensus
Criteria for Pediatric Sepsis and Septic Shock" by Schlapbach, Watson,
Sorce, Argent, et al. (2024) <doi:10.1001/jama.2024.0179> (Drs Schlapbach,
Watson, Sorce, and Argent contributed equally) and the application note
"phoenix: an R package and Python module for calculating the Phoenix
pediatric sepsis score and criteria" by DeWitt, Russell, Rebull,
Sanchez-Pinto, and Bennett (2024) <doi:10.1093/jamiaopen/ooae066>.
Author: Peter DeWitt [aut, cre] ,
Seth Russell [ctb] ,
Meg Rebull [ctb] ,
Tell Bennett [ctb] ,
L. Nelson Sanchez-Pinto [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between phoenix versions 1.1.2 dated 2025-05-02 and 1.1.3 dated 2025-10-22
phoenix-1.1.2/phoenix/man/figures/examples.R |only phoenix-1.1.2/phoenix/man/figures/hand-drawn-phoenix.pdf |only phoenix-1.1.2/phoenix/man/figures/hex.R |only phoenix-1.1.2/phoenix/man/figures/phoenix.png |only phoenix-1.1.2/phoenix/man/figures/phoenix.svg |only phoenix-1.1.2/phoenix/man/figures/phoenix.xcf |only phoenix-1.1.2/phoenix/man/figures/phoenix_1200x1200.png |only phoenix-1.1.2/phoenix/man/figures/phoenix_600x600.png |only phoenix-1.1.2/phoenix/man/figures/phoenix_hex.png |only phoenix-1.1.3/phoenix/DESCRIPTION | 8 - phoenix-1.1.3/phoenix/MD5 | 59 ++++------ phoenix-1.1.3/phoenix/NEWS.md | 5 phoenix-1.1.3/phoenix/R/data-sets.R | 4 phoenix-1.1.3/phoenix/R/phoenix-package.R | 4 phoenix-1.1.3/phoenix/R/phoenix.R | 2 phoenix-1.1.3/phoenix/R/phoenix8.R | 8 - phoenix-1.1.3/phoenix/R/phoenix_cardiovascular.R | 4 phoenix-1.1.3/phoenix/R/phoenix_renal.R | 4 phoenix-1.1.3/phoenix/R/phoenix_respiratory.R | 2 phoenix-1.1.3/phoenix/README.md | 35 ++++-- phoenix-1.1.3/phoenix/build/partial.rdb |binary phoenix-1.1.3/phoenix/build/vignette.rds |binary phoenix-1.1.3/phoenix/data/sepsis.rda |binary phoenix-1.1.3/phoenix/inst/CITATION | 82 ++++++--------- phoenix-1.1.3/phoenix/inst/doc/phoenix.Rmd | 2 phoenix-1.1.3/phoenix/inst/doc/phoenix.html | 29 ++--- phoenix-1.1.3/phoenix/man/phoenix-package.Rd | 4 phoenix-1.1.3/phoenix/man/phoenix.Rd | 4 phoenix-1.1.3/phoenix/man/phoenix8.Rd | 8 - phoenix-1.1.3/phoenix/man/phoenix_cardiovascular.Rd | 4 phoenix-1.1.3/phoenix/man/phoenix_neurologic.Rd | 2 phoenix-1.1.3/phoenix/man/phoenix_renal.Rd | 4 phoenix-1.1.3/phoenix/man/phoenix_respiratory.Rd | 2 phoenix-1.1.3/phoenix/man/sepsis.Rd | 4 phoenix-1.1.3/phoenix/vignettes/phoenix.Rmd | 2 35 files changed, 143 insertions(+), 139 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] ,
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
Francois Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.15.0 dated 2025-09-16 and 2.16.0 dated 2025-10-22
DESCRIPTION | 12 MD5 | 39 NAMESPACE | 3 NEWS.md | 21 R/copy_labels.R | 8 R/dictionary_to_labels.R |only R/lookfor.R | 178 +++- R/val_labels.R | 33 R/var_label.R | 31 inst/doc/look_for.R | 6 inst/doc/look_for.Rmd | 10 inst/doc/look_for.html | 1237 ++++++++++++++++++++++++++++- man/dictionary_to_variable_labels.Rd |only man/look_for.Rd | 42 man/names_prefixed_by_values.Rd | 5 man/val_labels.Rd | 7 man/var_label.Rd | 16 tests/testthat/test-copy_labels.r | 8 tests/testthat/test-dictionary_to_labels.R |only tests/testthat/test-labelled.r | 23 tests/testthat/test_lookfor.R | 52 + vignettes/look_for.Rmd | 10 22 files changed, 1647 insertions(+), 94 deletions(-)
Title: Process ArcGIS Protocol Buffer FeatureCollections
Description: Fast processing of ArcGIS FeatureCollection protocol buffers in R.
It is designed to work seamlessly with 'httr2' and integrates with 'sf'.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcpbf versions 0.1.7 dated 2025-04-10 and 0.2.0 dated 2025-10-22
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ src/rust/arcpbf/Cargo.toml | 2 +- src/rust/arcpbf/src/geometry/point.rs | 2 +- src/rust/arcpbf/src/parse.rs | 9 +++++++-- src/rust/esripbf/Cargo.toml | 3 +-- 7 files changed, 25 insertions(+), 16 deletions(-)
Title: Create Upset Plots
Description: Create Upset plots using a combination of 'ggplot2' and 'patchwork'.
Author: Stevie Pederson [aut, cre]
Maintainer: Stevie Pederson <stephen.pederson.au@gmail.com>
Diff between SimpleUpset versions 0.1.2 dated 2025-10-06 and 0.1.3 dated 2025-10-22
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------- NAMESPACE | 1 NEWS.md | 4 +++ R/simpleUpSet.R | 22 ++++++++++++++++---- inst/doc/introduction.html | 34 ++++++++++++++++---------------- man/simpleUpSet.Rd | 3 +- tests/testthat/test-private_functions.R | 22 +++++++++++++++++++- 8 files changed, 74 insertions(+), 32 deletions(-)
Title: Practical Numerical Math Functions
Description: Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans W. Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 2.4.4 dated 2023-11-09 and 2.4.6 dated 2025-10-22
DESCRIPTION | 8 +++--- MD5 | 28 +++++++++++---------- NEWS | 12 +++++++-- NEWS.md | 21 ++++++++++++---- R/dblquad.R | 41 -------------------------------- R/erf.R | 8 +++--- R/fminunc.R | 11 ++++++-- R/midpoint.R | 64 +++++++++++++++++++++++++++++++++++++++++++++++--- R/simpson.R |only README.md | 2 - man/midpoint.Rd | 12 ++++----- man/ode.Rd | 2 - man/pracma-package.Rd | 2 - man/simpadpt.Rd | 2 - man/simpson.Rd |only man/simpson2d.Rd | 2 - 16 files changed, 129 insertions(+), 86 deletions(-)
Title: Water Quality Assessment and Environmental Compliance in Brazil
Description: Tools to import, clean, validate, and analyze freshwater quality data in Brazil.
Implements water quality indices including the Water Quality Index (WQI/IQA),
the Trophic State Index (TSI/IET) after Carlson (1977) <doi:10.4319/lo.1977.22.2.0361>
and Lamparelli (2004) <https://www.teses.usp.br/teses/disponiveis/41/41134/tde-20032006-075813/publico/TeseLamparelli2004.pdf>,
and the National Sanitation Foundation Water Quality Index (NSF WQI)
<doi:10.1007/s11157-023-09650-7>. The package also checks
compliance with Brazilian standard CONAMA Resolution 357/2005
<https://conama.mma.gov.br/?id=450&option=com_sisconama&task=arquivo.download>
and generates reproducible reports for routine monitoring workflows.
Author: Vinicius Saraiva Santos [aut, cre]
Maintainer: Vinicius Saraiva Santos <vinisaraiva@gmail.com>
Diff between tikatuwq versions 0.6.2 dated 2025-10-07 and 0.7.2 dated 2025-10-22
DESCRIPTION | 8 - MD5 | 36 ++++-- NAMESPACE | 6 + NEWS.md | 94 +++++++++++------ R/param_analysis.R |only R/param_analysis_multi.R |only R/plot_trend.R | 10 + README.md | 155 ++++++++++++++++++++--------- inst/CITATION | 22 ++-- inst/doc/tikatuwq.R | 12 +- inst/doc/tikatuwq.Rmd | 14 +- inst/doc/tikatuwq.html | 7 + man/param_analysis.Rd |only man/param_analysis_multi.Rd |only man/param_plot.Rd |only man/param_plot_multi.Rd |only man/param_summary.Rd |only man/param_summary_multi.Rd |only man/param_trend.Rd |only man/param_trend_multi.Rd |only tests/testthat/test-param_analysis.R |only tests/testthat/test-param_analysis_multi.R |only tests/testthat/test-plot_map.R | 24 ++-- tests/testthat/test-plot_trend.R | 23 ++-- vignettes/tikatuwq.Rmd | 14 +- 25 files changed, 284 insertions(+), 141 deletions(-)
Title: Access to the 'RESOURCECODE' Hindcast Database
Description: Utility functions to download data from the 'RESOURCECODE'
hindcast database of sea-states, time series of sea-state parameters
and time series of 1D and 2D wave spectra. See
<https://resourcecode.ifremer.fr> for more details about the available
data. Also provides facilities to plot and analyse downloaded data,
such as computing the sea-state parameters from both the 1D and 2D
surface elevation variance spectral density.
Author: Nicolas Raillard [aut, cre]
Maintainer: Nicolas Raillard <nicolas.raillard@ifremer.fr>
Diff between resourcecode versions 0.3.0 dated 2025-08-21 and 0.4.0 dated 2025-10-22
resourcecode-0.3.0/resourcecode/R/zzz.R |only resourcecode-0.3.0/resourcecode/man/figures/README-plot-bathymetry-1.png |only resourcecode-0.3.0/resourcecode/man/figures/README-unnamed-chunk-2-1.png |only resourcecode-0.4.0/resourcecode/DESCRIPTION | 18 resourcecode-0.4.0/resourcecode/MD5 | 81 resourcecode-0.4.0/resourcecode/NAMESPACE | 6 resourcecode-0.4.0/resourcecode/NEWS.md | 15 resourcecode-0.4.0/resourcecode/R/data.R | 67 resourcecode-0.4.0/resourcecode/R/download_data.R | 69 resourcecode-0.4.0/resourcecode/R/orbital_speed.R | 161 - resourcecode-0.4.0/resourcecode/R/plots.R | 237 +- resourcecode-0.4.0/resourcecode/R/specta_data_ploting.R | 110 + resourcecode-0.4.0/resourcecode/R/specta_data_processing.R | 889 ++++------ resourcecode-0.4.0/resourcecode/R/spectral_data_download.R | 742 ++++---- resourcecode-0.4.0/resourcecode/R/utils.R | 304 ++- resourcecode-0.4.0/resourcecode/README.md | 26 resourcecode-0.4.0/resourcecode/data/rscd_data_example.rda |only resourcecode-0.4.0/resourcecode/data/rscd_dir.rda |binary resourcecode-0.4.0/resourcecode/data/rscd_freq.rda |binary resourcecode-0.4.0/resourcecode/inst/doc/resourcecode.html | 82 resourcecode-0.4.0/resourcecode/man/closest_point_field.Rd | 9 resourcecode-0.4.0/resourcecode/man/closest_point_spec.Rd | 2 resourcecode-0.4.0/resourcecode/man/compute_sea_state_1d_spectrum.Rd | 41 resourcecode-0.4.0/resourcecode/man/compute_sea_state_2d_spectrum.Rd | 41 resourcecode-0.4.0/resourcecode/man/convert_spectrum_2d1d.Rd | 77 resourcecode-0.4.0/resourcecode/man/cut_seasons.Rd | 8 resourcecode-0.4.0/resourcecode/man/figures/README-bathymetry-1.png |only resourcecode-0.4.0/resourcecode/man/figures/README-data_fetcher-1.png |binary resourcecode-0.4.0/resourcecode/man/fractional_day_of_year.Rd |only resourcecode-0.4.0/resourcecode/man/get_1d_spectrum.Rd | 2 resourcecode-0.4.0/resourcecode/man/get_2d_spectrum.Rd | 2 resourcecode-0.4.0/resourcecode/man/get_parameters.Rd | 2 resourcecode-0.4.0/resourcecode/man/metconv2zmcomp.Rd |only resourcecode-0.4.0/resourcecode/man/plot_1d_specta.Rd |only resourcecode-0.4.0/resourcecode/man/plot_2d_specta.Rd | 7 resourcecode-0.4.0/resourcecode/man/rscd_data_example.Rd |only resourcecode-0.4.0/resourcecode/man/rscd_mapplot.Rd | 9 resourcecode-0.4.0/resourcecode/man/zmcomp2metconv.Rd | 2 resourcecode-0.4.0/resourcecode/src/Makevars | 2 resourcecode-0.4.0/resourcecode/src/Makevars.win | 2 resourcecode-0.4.0/resourcecode/tests/testthat/Rplots.pdf |binary resourcecode-0.4.0/resourcecode/tests/testthat/test-data_download.R | 57 resourcecode-0.4.0/resourcecode/tests/testthat/test-fractional_day_of_year.R |only resourcecode-0.4.0/resourcecode/tests/testthat/test-plots.R | 70 resourcecode-0.4.0/resourcecode/tests/testthat/test-test_closest_point.R |only resourcecode-0.4.0/resourcecode/tests/testthat/test-test_cut_seasons.R | 134 - resourcecode-0.4.0/resourcecode/tests/testthat/test-test_utils.R | 54 47 files changed, 1846 insertions(+), 1482 deletions(-)
Title: A Model Library for 'nlmixr2'
Description: A model library for 'nlmixr2'. The models include
(and plan to include) pharmacokinetic, pharmacodynamic, and
disease models used in pharmacometrics. Where applicable,
references for each model are included in the meta-data for
each individual model. The package also includes model
composition and modification functions to make model updates
easier.
Author: Richard Hooijmaijers [aut],
Matthew Fidler [aut] ,
Bill Denney [aut, cre]
Maintainer: Bill Denney <wdenney@humanpredictions.com>
Diff between nlmixr2lib versions 0.3.0 dated 2024-10-07 and 0.3.1 dated 2025-10-22
DESCRIPTION | 19 +- MD5 | 66 +++++----- NEWS.md | 6 R/convertMM.R | 4 R/modeldb.R | 1 R/readModelDb.R | 5 README.md | 2 build/vignette.rds |binary data/modeldb.rda |binary inst/WORDLIST | 9 + inst/doc/Grimm_2023.R |only inst/doc/Grimm_2023.Rmd |only inst/doc/Grimm_2023.html |only inst/doc/Kyhl_2016_nalmefene.R |only inst/doc/Kyhl_2016_nalmefene.Rmd |only inst/doc/Kyhl_2016_nalmefene.html |only inst/doc/list-of-models.html | 37 +++-- inst/modeldb.qs |only inst/modeldb/endogenous/phenylalanine_charbonneau_2021.R | 4 inst/modeldb/pharmacodynamics/indirect_1cpt_inhi_kout_r0rmaxcrmax.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_inhi_kin_kin_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_inhi_kin_kout_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_inhi_kout_kin_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_inhi_kout_kout_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_stim_kin_kin_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_stim_kin_kout_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_stim_kout_kin_t.R | 2 inst/modeldb/pharmacodynamics/indirect_circ_1cpt_stim_kout_kout_t.R | 2 inst/modeldb/pharmacodynamics/indirect_prec_1cpt_inhi_CLV.R | 2 inst/modeldb/pharmacodynamics/indirect_prec_1cpt_inhi_r0rmaxcrmax.R | 2 inst/modeldb/pharmacodynamics/indirect_prec_1cpt_stim_CLV.R | 2 inst/modeldb/pharmacodynamics/indirect_prec_1cpt_stim_r0rmaxcrmax.R | 2 inst/modeldb/specificDrugs/Grimm_2023_gantenerumab.R |only inst/modeldb/specificDrugs/Grimm_2023_trontinemab.R |only inst/modeldb/specificDrugs/Kyhl_2016_nalmefene.R |only man/modeldb.Rd | 2 tests/testthat/test-addWeibullAbs.R | 2 tests/testthat/test-searchReplace.R | 5 vignettes/Grimm_2023.Rmd |only vignettes/Kyhl_2016_nalmefene.Rmd |only 40 files changed, 119 insertions(+), 69 deletions(-)
Title: Mediterranean Landscape Simulation
Description: Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.
Author: Miquel De Caceres [aut, cre],
Aitor Ameztegui [aut] ,
Maria Gonzalez [aut] ,
Nuria Aquilue [aut],
Daniel Caviedes-Voullieme [aut],
Mario Morales-Hernandez [aut],
Mario Beltran [ctb],
Rodrigo Balaguer-Romano [ctb] ,
Roberto Molowny-Horas [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfateland versions 2.7.0 dated 2025-08-28 and 2.8.1 dated 2025-10-22
medfateland-2.7.0/medfateland/man/shinyplot_land.Rd |only medfateland-2.7.0/medfateland/src/tetis.h |only medfateland-2.8.1/medfateland/DESCRIPTION | 12 medfateland-2.8.1/medfateland/MD5 | 61 - medfateland-2.8.1/medfateland/NAMESPACE | 5 medfateland-2.8.1/medfateland/R/RcppExports.R | 44 medfateland-2.8.1/medfateland/R/default_watershed_control.R | 14 medfateland-2.8.1/medfateland/R/extract_variables.R | 128 +- medfateland-2.8.1/medfateland/R/initialize_landscape.R | 2 medfateland-2.8.1/medfateland/R/model_land.R | 460 +--------- medfateland-2.8.1/medfateland/R/model_land_utils.R |only medfateland-2.8.1/medfateland/R/model_spatial.R | 16 medfateland-2.8.1/medfateland/R/optimization_rock.R | 1 medfateland-2.8.1/medfateland/R/overland_routing.R | 12 medfateland-2.8.1/medfateland/R/plot.spwb_land.R | 137 ++ medfateland-2.8.1/medfateland/R/shinyplot_land.R | 56 - medfateland-2.8.1/medfateland/R/sysdata.rda |binary medfateland-2.8.1/medfateland/man/default_watershed_control.Rd | 7 medfateland-2.8.1/medfateland/man/extract_variables.Rd | 25 medfateland-2.8.1/medfateland/man/plot.spwb_land.Rd | 9 medfateland-2.8.1/medfateland/man/shinyplot.sf.Rd |only medfateland-2.8.1/medfateland/man/shinyplot.spwb_land.Rd |only medfateland-2.8.1/medfateland/man/spwb_land.Rd | 5 medfateland-2.8.1/medfateland/src/RcppExports.cpp | 151 +-- medfateland-2.8.1/medfateland/src/spwbland.cpp | 122 +- medfateland-2.8.1/medfateland/src/spwbland.h | 22 medfateland-2.8.1/medfateland/src/tetis.cpp | 371 +++++--- medfateland-2.8.1/medfateland/src/tetis_channel.cpp | 29 medfateland-2.8.1/medfateland/src/tetis_channel.h | 2 medfateland-2.8.1/medfateland/tests/testthat/test_desc.R | 11 medfateland-2.8.1/medfateland/tests/testthat/test_land.R | 69 + medfateland-2.8.1/medfateland/tests/testthat/test_land_day.R | 32 medfateland-2.8.1/medfateland/tests/testthat/test_spatial.R | 13 medfateland-2.8.1/medfateland/tests/testthat/test_spatial_day.R | 13 34 files changed, 946 insertions(+), 883 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmaps for Data Analysis
Description: Facilitates building topology preserving maps for data analysis.
Author: Zubin Dowlaty [aut, cre],
Mu Sigma, Inc. [cph]
Maintainer: Zubin Dowlaty <zubin.dowlaty@mu-sigma.com>
Diff between HVT versions 25.2.6 dated 2025-10-14 and 25.2.7 dated 2025-10-22
HVT-25.2.6/HVT/R/create_highlighted_results_table.R |only HVT-25.2.7/HVT/DESCRIPTION | 30 +++++------ HVT-25.2.7/HVT/MD5 | 22 ++++---- HVT-25.2.7/HVT/NAMESPACE | 2 HVT-25.2.7/HVT/NEWS.md | 2 HVT-25.2.7/HVT/R/OptimizationResults.R |only HVT-25.2.7/HVT/R/plotMsmKN.R | 16 +++++- HVT-25.2.7/HVT/README.md | 42 ++++++++-------- HVT-25.2.7/HVT/inst/doc/HVT.R | 16 +++--- HVT-25.2.7/HVT/inst/doc/HVT.Rmd | 30 ++++++----- HVT-25.2.7/HVT/inst/doc/HVT.html | 52 ++++++++++---------- HVT-25.2.7/HVT/man/OptimizationResults.Rd |only HVT-25.2.7/HVT/man/plotMsmKN.Rd |only HVT-25.2.7/HVT/vignettes/HVT.Rmd | 30 ++++++----- 14 files changed, 135 insertions(+), 107 deletions(-)
Title: Call Google's 'Natural Language', 'Cloud Translation', 'Cloud
Speech', and 'Cloud Text-to-Speech' APIs
Description: Access Google Cloud machine learning APIs for text and speech tasks.
Use the Cloud Translation API for text detection and translation, the Natural Language API
to analyze sentiment, entities, and syntax, the Cloud Speech API to transcribe audio to text,
and the Cloud Text-to-Speech API to synthesize text into audio files.
Author: Aleksander Dietrichson [ctb],
Mark Edmondson [aut],
John Muschelli [ctb],
Neal Richardson [rev] ,
Julia Gustavsen [rev] ,
Cheryl Isabella Lim [aut, cre]
Maintainer: Cheryl Isabella Lim <cheryl.academic@gmail.com>
Diff between googleLanguageR versions 0.3.1 dated 2025-08-24 and 0.3.1.1 dated 2025-10-22
DESCRIPTION | 44 +++------ MD5 | 21 ++-- NEWS.md | 21 ++++ R/translate.R | 146 ++++++++++++++++++++++--------- README.md | 4 inst/doc/nlp.html | 4 inst/doc/setup.html | 4 inst/doc/speech.html | 4 inst/doc/text-to-speech.html | 6 - inst/doc/translation.html | 4 man/gl_translate.Rd | 2 tests/testthat/test_translate_batching.R |only 12 files changed, 167 insertions(+), 93 deletions(-)
More information about googleLanguageR at CRAN
Permanent link
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play and spatial shooting data are also available for the Spanish league. Methods for analysis include a
population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls, offensive rebounds and different types of shooting charts.
Please see Vinue [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.3.4 dated 2025-02-14 and 1.4 dated 2025-10-22
DESCRIPTION | 25 +++--- MD5 | 158 ++++++++++++++++++++++++-------------- NAMESPACE | 50 ++++++++++-- NEWS | 4 R/do_OE.R | 2 R/do_add_adv_stats.R | 3 R/do_best_zones.R |only R/do_clutch_time.R | 2 R/do_divide_court_zones.R |only R/do_filter_data.R |only R/do_four_factors_df.R | 5 - R/do_ft_fouls.R | 4 R/do_lineup.R | 17 ++-- R/do_map_nats.R | 4 R/do_possession.R | 8 - R/do_possession_stats.R |only R/do_prepare_data.R | 26 +++--- R/do_prepare_data_gradient.R |only R/do_prepare_data_or.R | 48 ++++++----- R/do_prepare_data_to.R | 14 +-- R/do_preproc_period.R |only R/do_process_acb_pbp.R | 17 +--- R/do_reb_off_success.R | 2 R/do_rpackage_stats.R |only R/do_scrape_days_acb.R |only R/do_scrape_shots_acb.R |only R/do_shots_stats.R |only R/do_stats.R | 4 R/do_stats_per_period.R | 30 +------ R/do_stats_teams.R | 15 ++- R/do_time_out_success.R | 2 R/do_usage.R |only R/do_violin_box_plots.R |only R/do_viz_shots_gradient.R |only R/do_viz_shots_scatter.R |only R/do_volume_threes.R |only R/get_barplot_monthly_stats.R | 4 R/get_bubble_plot.R | 15 ++- R/get_four_factors_plot.R | 13 ++- R/get_heatmap_bb.R | 3 R/get_shooting_plot.R | 36 ++++---- R/get_stats_seasons.R | 5 + R/get_table_results.R | 2 R/scraping_games_acb.R | 5 - build/partial.rdb |only build/vignette.rds |binary data/acb_players_2425.RData |only data/acb_shooting_data_2425.RData |only data/metrics_player_zone.RData |only inst/doc/BAwiR.R | 4 inst/doc/BAwiR.Rmd | 8 + inst/doc/BAwiR.html | 23 ++--- inst/doc/BAwiR_pbp.R | 35 ++------ inst/doc/BAwiR_pbp.Rmd | 37 ++------ inst/doc/BAwiR_pbp.html | 69 ++++++---------- inst/doc/BAwiR_sc.R |only inst/doc/BAwiR_sc.Rmd |only inst/doc/BAwiR_sc.html |only inst/parquet.png |only man/BAwiR-package.Rd | 41 +++++++-- man/acb_games_2223_coach.Rd | 2 man/acb_games_2223_info.Rd | 2 man/acb_players_2425.Rd |only man/acb_shooting_data_2425.Rd |only man/acb_vbc_cz_pbp_2223.Rd | 2 man/acb_vbc_cz_sl_2223.Rd | 2 man/do_OE.Rd | 2 man/do_add_adv_stats.Rd | 1 man/do_best_zones.Rd |only man/do_divide_court_zones.Rd |only man/do_filter_data.Rd |only man/do_four_factors_df.Rd | 5 - man/do_possession.Rd | 2 man/do_possession_stats.Rd |only man/do_prepare_data.Rd | 2 man/do_prepare_data_gradient.Rd |only man/do_prepare_data_or.Rd | 4 man/do_prepare_data_to.Rd | 2 man/do_preproc_period.Rd |only man/do_process_acb_pbp.Rd | 2 man/do_rpackage_stats.Rd |only man/do_scrape_days_acb.Rd |only man/do_scrape_shots_acb.Rd |only man/do_shots_stats.Rd |only man/do_stats.Rd | 2 man/do_stats_per_period.Rd | 30 +------ man/do_stats_teams.Rd | 4 man/do_usage.Rd |only man/do_violin_box_plots.Rd |only man/do_viz_shots_gradient.Rd |only man/do_viz_shots_scatter.Rd |only man/do_volume_threes.Rd |only man/get_barplot_monthly_stats.Rd | 4 man/get_bubble_plot.Rd | 6 + man/get_four_factors_plot.Rd | 7 + man/get_shooting_plot.Rd | 10 +- man/get_stats_seasons.Rd | 5 + man/metrics_player_zone.Rd |only vignettes/BAwiR.Rmd | 8 + vignettes/BAwiR_pbp.Rmd | 37 ++------ vignettes/BAwiR_sc.Rmd |only 101 files changed, 483 insertions(+), 398 deletions(-)
Title: General Modules for 'teal' Applications
Description: Prebuilt 'shiny' modules containing tools for viewing data,
visualizing data, understanding missing and outlier values within your
data and performing simple data analysis. This extends 'teal'
framework that supports reproducible research and analysis.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Ondrej Slama [ctb],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Nikolas Burkoff [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.modules.general versions 0.5.0 dated 2025-08-20 and 0.5.1 dated 2025-10-22
DESCRIPTION | 12 MD5 | 188 - NAMESPACE | 67 NEWS.md | 720 ++-- R/teal.modules.general.R | 43 R/tm_a_pca.R | 2324 ++++++------- R/tm_a_regression.R | 2110 +++++------ R/tm_data_table.R | 698 +-- R/tm_file_viewer.R | 510 +- R/tm_front_page.R | 528 +- R/tm_g_association.R | 1160 +++--- R/tm_g_bivariate.R | 2240 ++++++------ R/tm_g_distribution.R | 2840 ++++++++-------- R/tm_g_response.R | 1254 +++---- R/tm_g_scatterplot.R | 2200 ++++++------ R/tm_g_scatterplotmatrix.R | 1220 +++--- R/tm_missing_data.R | 2836 +++++++-------- R/tm_outliers.R | 2746 +++++++-------- R/tm_t_crosstable.R | 1040 ++--- R/tm_variable_browser.R | 2536 +++++++------- R/utils.R | 752 ++-- build/vignette.rds |binary inst/WORDLIST | 31 inst/doc/decorate-module-output.R | 840 ++-- inst/doc/decorate-module-output.html | 1750 ++++----- inst/doc/teal-modules-general.R | 154 inst/doc/teal-modules-general.html | 998 ++--- inst/doc/using-association-plot.R | 544 +-- inst/doc/using-association-plot.html | 1320 +++---- inst/doc/using-bivariate-plot.R | 1182 +++--- inst/doc/using-bivariate-plot.html | 1958 +++++------ inst/doc/using-cross-table.R | 224 - inst/doc/using-cross-table.html | 992 ++--- inst/doc/using-data-table.R | 162 inst/doc/using-data-table.html | 934 ++--- inst/doc/using-outliers-module.R | 326 - inst/doc/using-outliers-module.html | 1100 +++--- inst/doc/using-regression-plots.R | 478 +- inst/doc/using-regression-plots.html | 1254 +++---- inst/doc/using-response-plot.R | 698 +-- inst/doc/using-response-plot.html | 1474 ++++---- inst/doc/using-scatterplot-matrix.R | 254 - inst/doc/using-scatterplot-matrix.html | 1032 ++--- inst/doc/using-scatterplot.R | 686 +-- inst/doc/using-scatterplot.html | 1462 ++++---- man/srv_decorate_teal_data.Rd | 72 man/tm_a_pca.Rd | 414 +- man/tm_a_regression.Rd | 492 +- man/tm_g_association.Rd | 418 +- man/tm_g_bivariate.Rd | 560 +-- man/tm_g_distribution.Rd | 396 +- man/tm_g_response.Rd | 472 +- man/tm_g_scatterplot.Rd | 660 +-- man/tm_g_scatterplotmatrix.Rd | 476 +- man/tm_missing_data.Rd | 350 - man/tm_outliers.Rd | 418 +- man/tm_t_crosstable.Rd | 448 +- tests/testthat/helper-TealAppDriver.R | 96 tests/testthat/test-examples.R | 360 +- tests/testthat/test-shinytest2-tm_a_pca.R | 526 +- tests/testthat/test-shinytest2-tm_a_regression.R | 368 +- tests/testthat/test-shinytest2-tm_data_table.R | 210 - tests/testthat/test-shinytest2-tm_file_viewer.R | 198 - tests/testthat/test-shinytest2-tm_front_page.R | 144 tests/testthat/test-shinytest2-tm_g_association.R | 228 - tests/testthat/test-shinytest2-tm_g_bivariate.R | 488 +- tests/testthat/test-shinytest2-tm_g_distribution.R | 254 - tests/testthat/test-shinytest2-tm_g_response.R | 228 - tests/testthat/test-shinytest2-tm_g_scatterplot.R | 414 +- tests/testthat/test-shinytest2-tm_g_scatterplotmatrix.R | 238 - tests/testthat/test-shinytest2-tm_misssing_data.R | 358 +- tests/testthat/test-shinytest2-tm_outliers.R | 642 +-- tests/testthat/test-shinytest2-tm_t_crosstable.R | 222 - tests/testthat/test-shinytest2-tm_variable_browser.R | 462 +- tests/testthat/test_bivariate_ggplot_call.R | 195 - 75 files changed, 29319 insertions(+), 29365 deletions(-)
More information about teal.modules.general at CRAN
Permanent link
Title: Modelling of Extreme Values
Description: Various tools for the analysis of univariate, multivariate and functional extremes. Exact simulation from max-stable processes (Dombry, Engelke and Oesting, 2016, <doi:10.1093/biomet/asw008>, R-Pareto processes for various parametric models, including Brown-Resnick (Wadsworth and Tawn, 2014, <doi:10.1093/biomet/ast042>) and Extremal Student (Thibaud and Opitz, 2015, <doi:10.1093/biomet/asv045>). Threshold selection methods, including Wadsworth (2016) <doi:10.1080/00401706.2014.998345>, and Northrop and Coleman (2014) <doi:10.1007/s10687-014-0183-z>. Multivariate extreme diagnostics. Estimation and likelihoods for univariate extremes, e.g., Coles (2001) <doi:10.1007/978-1-4471-3675-0>.
Author: Leo Belzile [aut, cre] ,
Jennifer L. Wadsworth [aut],
Paul J. Northrop [aut] ,
Raphael Huser [aut] ,
Scott D. Grimshaw [aut] ,
Jin Zhang [ctb],
Michael A. Stephens [ctb],
Art B. Owen [ctb]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between mev versions 1.17 dated 2024-07-09 and 2.0 dated 2025-10-22
mev-1.17/mev/R/automrl.R |only mev-1.17/mev/man/chibar.Rd |only mev-1.17/mev/man/dot-C1.Rd |only mev-1.17/mev/man/dot-Joint_MLE_NHPP.Rd |only mev-1.17/mev/man/dot-exp_info_algebraic.Rd |only mev-1.17/mev/man/dot-mvrnorm_arma.Rd |only mev-1.17/mev/man/dot-score_algebraic.Rd |only mev-1.17/mev/man/jac.Rd |only mev-1.17/mev/man/vmetric.diag.Rd |only mev-2.0/mev/DESCRIPTION | 40 mev-2.0/mev/MD5 | 255 mev-2.0/mev/NAMESPACE | 110 mev-2.0/mev/NEWS.md | 160 mev-2.0/mev/R/NCdiag.R | 660 +- mev-2.0/mev/R/RcppExports.R | 40 mev-2.0/mev/R/Stein.R |only mev-2.0/mev/R/Wdiag.R | 854 +- mev-2.0/mev/R/asymcoef.R | 541 - mev-2.0/mev/R/coefvariation.R | 564 + mev-2.0/mev/R/datasets.R | 26 mev-2.0/mev/R/distributions.R | 399 - mev-2.0/mev/R/egp.R | 3153 +++++++--- mev-2.0/mev/R/erm.R |only mev-2.0/mev/R/extcoef.R | 533 + mev-2.0/mev/R/extgp.R |only mev-2.0/mev/R/extremogram.R | 170 mev-2.0/mev/R/genquantselect.R |only mev-2.0/mev/R/gp.R | 1499 ++-- mev-2.0/mev/R/infomattest.R | 802 +- 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Title: 'shiny' Application for Biological Dosimetry
Description: A tool to perform all different statistical tests and calculations
needed by Biological dosimetry Laboratories. Detailed documentation is
available in <https://biodosetools-team.github.io/documentation/>.
Author: Alfredo Hernandez [aut] ,
Anna Frances-Abellan [aut, cre] ,
David Endesfelder [aut],
Pere Puig [aut]
Maintainer: Anna Frances-Abellan <anna.frances@uab.cat>
Diff between biodosetools versions 3.7 dated 2025-10-14 and 3.7.1 dated 2025-10-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/utils-md.R | 45 ++++++++++++++++++++++++--------------------- inst/doc/interlab.html | 12 ++++++------ 4 files changed, 36 insertions(+), 33 deletions(-)
Title: Streamline Bioacoustic Analysis
Description: Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. 'warbleR' makes use of the basic sound analysis tools from the packages 'tuneR' and 'seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
Author: Marcelo Araya-Salas [aut, cre] ,
Grace Smith-Vidaurre [aut]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
This is a re-admission after prior archival of version 1.1.36 dated 2025-07-28
Diff between warbleR versions 1.1.36 dated 2025-07-28 and 1.1.37 dated 2025-10-22
DESCRIPTION | 6 MD5 | 60 +++--- NEWS.md | 8 R/acoustic_activity.R | 27 +- R/consolidate.R | 2 R/cross_correlation.R | 2 R/fix_wavs.R | 2 R/freq_ts.R | 4 R/query_xc.R | 313 --------------------------------- R/selection_table.R | 4 R/simulate_songs.R | 2 R/spectro_analysis.R | 2 R/warbleR-package.R | 2 R/xc_maps.R | 311 -------------------------------- README.md | 11 - build/vignette.rds |binary data/comp_matrix.rda |binary data/lbh_selec_table.rda |binary data/sim_coor_sing.rda |binary data/sth_annotations.rda |binary inst/doc/a_warbleR.html | 48 ++--- inst/doc/b_annotation_data_format.html | 92 ++++----- inst/doc/c_warbleR_workflow_02.html | 12 - man/acoustic_activity.Rd | 23 +- man/consolidate.Rd | 2 man/fix_wavs.Rd | 2 man/freq_ts.Rd | 4 man/map_xc.Rd | 17 - man/query_xc.Rd | 46 ---- man/simulate_songs.Rd | 2 man/warbleR.Rd | 2 31 files changed, 180 insertions(+), 826 deletions(-)
Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test
code with earlier versions of those same objects. If objects are unchanged
the tests pass, otherwise execution stops with error details. If in
interactive mode, tests can be reviewed through the provided interactive
environment.
Author: Brodie Gaslam [aut, cre],
Michael https://github.com/MichaelChirico [ctb],
R Core Team [cph]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between unitizer versions 1.4.22 dated 2025-03-18 and 1.4.23 dated 2025-10-22
unitizer-1.4.22/unitizer/tests/not-cran.R |only unitizer-1.4.23/unitizer/DESCRIPTION | 8 ++++---- unitizer-1.4.23/unitizer/MD5 | 13 ++++++------- unitizer-1.4.23/unitizer/NEWS.md | 7 +++++++ unitizer-1.4.23/unitizer/R/demo.R | 1 + unitizer-1.4.23/unitizer/R/load.R | 6 ++++++ unitizer-1.4.23/unitizer/build/vignette.rds |binary unitizer-1.4.23/unitizer/tests/_helper/init.R | 3 +++ 8 files changed, 27 insertions(+), 11 deletions(-)
Title: Download and Analyze Crash Data
Description: Easily Download Analysis-Ready Crash Data from the U.S. National Highway Traffic Safety Administration.
Author: Steve Jackson [aut, cre]
Maintainer: Steve Jackson <steve.jackson@toxcel.com>
This is a re-admission after prior archival of version 2.0.1 dated 2025-10-02
Diff between rfars versions 2.0.1 dated 2025-10-02 and 2.0.2 dated 2025-10-22
DESCRIPTION | 12 MD5 | 62 R/counts.R | 11 R/get_fars.R | 17 R/get_gescrss.R | 17 R/sysdata.rda |only README.md | 5633 ++++++++++++++-- data/fars_codebook.rda |binary data/geo_relations.rda |binary data/gescrss_codebook.rda |binary inst/doc/Alcohol_Counts.R | 230 inst/doc/Alcohol_Counts.Rmd | 74 inst/doc/Alcohol_Counts.html | 41 inst/doc/Counts.R | 196 inst/doc/Counts.Rmd | 105 inst/doc/Counts.html |11483 ++++++++++++++++++++++++++++++++- inst/doc/Crash_sequence_of_events.R | 162 inst/doc/Crash_sequence_of_events.Rmd | 197 inst/doc/Crash_sequence_of_events.html | 358 - inst/doc/Searchable_Codebooks.R | 28 inst/doc/Searchable_Codebooks.Rmd | 49 inst/doc/Searchable_Codebooks.html | 5861 +++++++++------- man/get_fars.Rd | 9 man/get_gescrss.Rd | 9 tests |only vignettes/Alcohol_Counts.Rmd | 74 vignettes/Counts.Rmd | 105 vignettes/Crash_sequence_of_events.Rmd | 197 vignettes/Searchable_Codebooks.Rmd | 49 29 files changed, 21131 insertions(+), 3848 deletions(-)
Title: Abstractions for Promise-Based Asynchronous Programming
Description: Provides fundamental abstractions for doing asynchronous
programming in R using promises. Asynchronous programming is useful
for allowing a single R process to orchestrate multiple tasks in the
background while also attending to something else. Semantics are
similar to 'JavaScript' promises, but with a syntax that is idiomatic
R.
Author: Joe Cheng [aut],
Barret Schloerke [aut, cre] ,
Winston Chang [aut] ,
Charlie Gao [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between promises versions 1.3.3 dated 2025-05-29 and 1.4.0 dated 2025-10-22
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promises-1.4.0/promises/man/with_promise_domain.Rd | 19 promises-1.4.0/promises/tests/spelling.R | 3 promises-1.4.0/promises/tests/testthat/_snaps |only promises-1.4.0/promises/tests/testthat/helper.R |only promises-1.4.0/promises/tests/testthat/test-aplus-2-1.R | 2 promises-1.4.0/promises/tests/testthat/test-aplus-2-2.R | 58 - promises-1.4.0/promises/tests/testthat/test-aplus-2-3.R | 2 promises-1.4.0/promises/tests/testthat/test-combining.R | 11 promises-1.4.0/promises/tests/testthat/test-cpp.R | 32 promises-1.4.0/promises/tests/testthat/test-domains.R | 225 +++- promises-1.4.0/promises/tests/testthat/test-hybrid-then-visibility.R |only promises-1.4.0/promises/tests/testthat/test-hybrid-then.R |only promises-1.4.0/promises/tests/testthat/test-legacy-aplus-2-2.R |only promises-1.4.0/promises/tests/testthat/test-legacy-domains.R |only promises-1.4.0/promises/tests/testthat/test-legacy-promise-map.R |only promises-1.4.0/promises/tests/testthat/test-methods.R | 89 + promises-1.4.0/promises/tests/testthat/test-ordering.R |only promises-1.4.0/promises/tests/testthat/test-otel.R |only promises-1.4.0/promises/tests/testthat/test-promise-map.R |only promises-1.4.0/promises/tests/testthat/test-then.R |only promises-1.4.0/promises/tests/testthat/test-visibility.R | 39 promises-1.4.0/promises/tests/testthat/test-zzz-future_promise.R | 47 - 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Title: Power Analysis for Differential Expression Studies
Description: Provides a convenient framework to simulate, test, power, and visualize
data for differential expression studies with lognormal or negative binomial
outcomes. Supported designs are two-sample comparisons of independent or
dependent outcomes. Power may be summarized in the context of controlling the
per-family error rate or family-wise error rate. Negative binomial methods are
described in Yu, Fernandez, and Brock (2017) <doi:10.1186/s12859-017-1648-2>
and Yu, Fernandez, and Brock (2020) <doi:10.1186/s12859-020-3541-7>.
Author: Brett Klamer [aut, cre] ,
Lianbo Yu [aut]
Maintainer: Brett Klamer <code@brettklamer.com>
Diff between depower versions 2025.1.20 dated 2025-01-23 and 2025.10.21 dated 2025-10-22
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Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox& [...truncated...]
Author: Steffen Kothe [aut, cre],
Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.4.1 dated 2025-04-08 and 1.4.2 dated 2025-10-22
DESCRIPTION | 8 MD5 | 1011 +++++----- NAMESPACE | 336 +-- NEWS.md | 730 +++---- R/acsaf_box_mergetime.R | 856 ++++---- R/add_grid_info.R | 210 +- R/arith_wrapper.R | 446 ++-- R/arithc_wrapper.R | 248 +- R/box_mergetime.R | 796 ++++---- R/calc_allDatesNc.R | 76 R/calc_field.R | 74 R/calc_overlapping_time.R | 328 +-- R/calc_regres_coef_a.R | 30 R/calc_regres_coef_b.R | 30 R/calc_timestepNc.R | 250 +- R/calc_timx_result.R | 122 - R/calc_trend.R | 136 - R/calc_trend_advanced.R | 254 +- R/change_att.R | 226 +- R/check.coordinate.system.R | 80 R/check_constant.R | 10 R/check_dims.R | 58 R/check_format.R | 20 R/check_infile.R | 18 R/check_infiles.R | 24 R/check_nc_version.R | 26 R/check_outfile.R | 18 R/check_overwrite.R | 14 R/check_variable.R | 10 R/cmsaf.abs.R | 302 +-- R/cmsaf.add.R | 168 - R/cmsaf.addc.R | 134 - R/cmsaf.adjust.two.files.R | 514 ++--- R/cmsaf.cat.R | 482 ++--- R/cmsaf.detrend.R | 378 +-- R/cmsaf.div.R | 168 - R/cmsaf.divc.R | 134 - R/cmsaf.mk.test.R | 406 ++-- R/cmsaf.mul.R | 168 - R/cmsaf.mulc.R | 136 - R/cmsaf.regres.R | 352 +-- R/cmsaf.stats.R | 244 +- R/cmsaf.stats.station.data.R | 428 ++-- R/cmsaf.sub.R | 166 - R/cmsaf.sub.rel.R | 294 +-- R/cmsaf.subc.R | 136 - R/cmsaf.transform.coordinate.system.R | 220 +- R/cmsafops.R | 198 +- R/constants.R | 280 +- R/correct_filename.R | 20 R/dayavg.R | 132 - R/daymax.R | 124 - R/daymean.R | 132 - R/daymin.R | 124 - R/daypctl.R | 130 - R/dayrange.R | 364 +-- R/daysd.R | 124 - R/daysum.R | 122 - R/dayvar.R | 124 - R/dayx_wrapper.R | 302 +-- R/define_dims.R | 86 R/define_vars.R | 46 R/define_vars_mk.test.R | 62 R/define_vars_trend.R | 84 R/define_vars_trend_advanced.R | 102 - R/divdpm.R | 132 - R/extract.level.R | 402 ++-- R/extract.period.R | 526 ++--- R/fld_cor_covar_wrapper.R | 286 +- R/fldcor.R | 152 - R/fldcovar.R | 152 - R/fldmax.R | 126 - R/fldmean.R | 126 - R/fldmin.R | 126 - R/fldrange.R | 128 - R/fldsd.R | 126 - R/fldsum.R | 126 - R/fldx_wrapper.R | 210 +- R/getDateID.R | 28 R/getTimeRange.R | 78 R/get_basename.R | 68 R/get_climatology.R | 58 R/get_cor_data.R | 62 R/get_cor_data_fld.R | 32 R/get_date_time.R | 68 R/get_dimensions.R | 110 - R/get_nc_version.R | 34 R/get_processing_time_string.R | 40 R/get_time.R | 198 +- R/get_time_bnds_1.R | 14 R/get_time_bnds_from_file.R | 16 R/get_time_bnds_mul.R | 28 R/get_time_bounds.R | 26 R/get_time_bounds_doy.R | 26 R/get_time_bounds_hour.R | 26 R/get_time_bounds_month.R | 26 R/get_time_bounds_run.R | 18 R/get_time_bounds_timrange.R | 54 R/get_time_bounds_year.R | 26 R/get_time_info.R | 42 R/get_var_atts.R | 36 R/get_var_from_vars.R | 26 R/get_var_from_vars_all.R | 26 R/get_var_prec.R | 16 R/gridboxmax.R | 130 - R/gridboxmean.R | 130 - R/gridboxmin.R | 130 - R/gridboxrange.R | 130 - R/gridboxsd.R | 130 - R/gridboxsum.R | 130 - R/gridboxvar.R | 130 - R/gridboxx_wrapper.R | 558 ++--- R/hourmean.R | 128 - R/hoursum.R | 128 - R/hourx_wrapper.R | 236 +- R/is_leap_year.R | 6 R/is_url.R | 4 R/keep_sig_alongside.R |only R/levbox_mergetime.R | 186 - R/map_regular.R | 598 +++--- R/mermean.R | 126 - R/merx_wrapper.R | 218 +- R/mon.anomaly.R | 420 ++-- R/mon.anomaly.climatology.R | 357 +-- R/mon_num_above.R | 130 - R/mon_num_below.R | 130 - R/mon_num_equal.R | 130 - R/mon_num_wrapper.R | 276 +- R/monavg.R | 136 - R/mondaymean.R | 400 ++-- R/monmax.R | 124 - R/monmean.R | 136 - R/monmin.R | 124 - R/monpctl.R | 134 - R/monsd.R | 126 - R/monsum.R | 124 - R/monvar.R | 126 - R/monx_wrapper.R | 342 +-- R/muldpm.R | 130 - R/multimonmean.R | 342 +-- R/multimonsum.R | 364 +-- R/multiplelm.R | 34 R/ncinfo.R | 242 +- R/num_above.R | 134 - R/num_below.R | 134 - R/num_equal.R | 134 - R/num_wrapper.R | 182 - R/read_file.R | 163 - R/read_file_all.R | 144 - R/read_gridfile.R | 54 R/read_ncvar.R | 174 - R/redefine_grid_vars.R | 72 R/release_questions.R | 36 R/remap.R | 660 +++--- R/runmax.R | 132 - R/runmean.R | 126 - R/runmin.R | 130 - R/runrange.R | 126 - R/runsd.R | 132 - R/runsum.R | 132 - R/runx_wrapper.R | 310 +-- R/seas.anomaly.R | 464 ++-- R/seasmean.R | 128 - R/seassd.R | 128 - R/seassum.R | 128 - R/seasvar.R | 130 - R/seasx_wrapper.R | 322 +-- R/sellonlatbox.R | 446 ++-- R/selmon.R | 310 +-- R/selperiod.R | 356 +-- R/selpoint.R | 506 ++--- R/selpoint.multi.R | 800 ++++---- R/seltime.R | 310 +-- R/selyear.R | 314 +-- R/set_seasons.R | 54 R/simplelm.R | 46 R/simplelm2.R | 50 R/tim_cor_covar_wrapper.R | 356 +-- R/timavg.R | 138 - R/timcor.R | 152 - R/timcovar.R | 152 - R/timcumsum.R | 598 +++--- R/timmax.R | 124 - R/timmean.R | 126 - R/timmin.R | 124 - R/timpctl.R | 134 - R/timsd.R | 126 - R/timselmean.R | 124 - R/timselsum.R | 130 - R/timselx_wrapper.R | 238 +- R/timsum.R | 126 - R/timx_wrapper.R | 164 - R/trend.R | 296 +-- R/trend_advanced.R | 332 +-- R/wfldmean.R | 130 - R/write_output_file.R | 222 +- R/write_output_file_mk.test.R | 228 +- R/write_output_file_trend.R | 264 +- R/write_output_file_trend_advanced.R | 284 +- R/xdpm_wrapper.R | 244 +- R/ydaymax.R | 124 - R/ydaymean.R | 322 +-- R/ydaymin.R | 124 - R/ydayrange.R | 124 - R/ydaysd.R | 126 - R/ydaysum.R | 122 - R/ydayx_wrapper.R | 270 +- R/ydrunmean.R | 132 - R/ydrunsd.R | 132 - R/ydrunsum.R | 132 - R/ydrunx_wrapper.R | 98 - R/year.anomaly.R | 318 +-- R/yearmax.R | 126 - R/yearmean.R | 308 +-- R/yearmin.R | 124 - R/yearrange.R | 126 - R/yearsd.R | 126 - R/yearsum.R | 308 +-- R/yearvar.R | 124 - R/yearx_wrapper.R | 258 +- R/ymonmax.R | 126 - R/ymonmean.R | 126 - R/ymonmedian.R | 126 - R/ymonmin.R | 126 - R/ymonsd.R | 126 - R/ymonsum.R | 126 - R/ymonx_wrapper.R | 270 +- R/yseasmax.R | 126 - R/yseasmean.R | 132 - R/yseasmin.R | 126 - R/yseassd.R | 126 - R/yseasx_wrapper.R | 256 +- R/zonmean.R | 126 - R/zonsum.R | 126 - R/zonx_wrapper.R | 230 +- inst/WORDLIST | 363 +-- man/acsaf_box_mergetime.Rd | 118 - man/add_grid_info.Rd | 76 man/box_mergetime.Rd | 244 +- man/calc_allDatesNc.Rd | 32 man/calc_overlapping_time.Rd | 76 man/calc_timestepNc.Rd | 32 man/change_att.Rd | 178 - man/check.coordinate.system.Rd | 40 man/cmsaf.abs.Rd | 188 - man/cmsaf.add.Rd | 240 +- man/cmsaf.addc.Rd | 198 +- man/cmsaf.adjust.two.files.Rd | 112 - man/cmsaf.cat.Rd | 168 - man/cmsaf.detrend.Rd | 198 +- man/cmsaf.div.Rd | 240 +- man/cmsaf.divc.Rd | 198 +- man/cmsaf.mk.test.Rd | 208 +- man/cmsaf.mul.Rd | 240 +- man/cmsaf.mulc.Rd | 200 +- man/cmsaf.regres.Rd | 196 +- man/cmsaf.stats.Rd | 118 - man/cmsaf.stats.station.data.Rd | 96 - man/cmsaf.sub.Rd | 238 +- man/cmsaf.sub.rel.Rd | 110 - man/cmsaf.subc.Rd | 200 +- man/cmsaf.transform.coordinate.system.Rd | 74 man/dayavg.Rd | 206 +- man/daymax.Rd | 196 +- man/daymean.Rd | 206 +- man/daymin.Rd | 196 +- man/daypctl.Rd | 204 +- man/dayrange.Rd | 198 +- man/daysd.Rd | 196 +- man/daysum.Rd | 196 +- man/dayvar.Rd | 196 +- man/divdpm.Rd | 194 +- man/extract.level.Rd | 222 +- man/extract.period.Rd | 200 +- man/fldcor.Rd | 214 +- man/fldcovar.Rd | 214 +- man/fldmax.Rd | 180 - man/fldmean.Rd | 180 - man/fldmin.Rd | 180 - man/fldrange.Rd | 182 - man/fldsd.Rd | 180 - man/fldsum.Rd | 180 - man/get_basename.Rd | 66 man/get_date_time.Rd | 54 man/get_dimensions.Rd | 32 man/get_nc_version.Rd | 28 man/get_processing_time_string.Rd | 42 man/get_time.Rd | 52 man/get_time_info.Rd | 36 man/gridboxmax.Rd | 194 +- man/gridboxmean.Rd | 194 +- man/gridboxmin.Rd | 194 +- man/gridboxrange.Rd | 194 +- man/gridboxsd.Rd | 194 +- man/gridboxsum.Rd | 194 +- man/gridboxvar.Rd | 194 +- man/hourmean.Rd | 174 - man/hoursum.Rd | 174 - man/levbox_mergetime.Rd | 256 +- man/map_regular.Rd | 166 - man/mermean.Rd | 162 - man/mon.anomaly.Rd | 210 +- man/mon.anomaly.climatology.Rd | 81 man/mon_num_above.Rd | 216 +- man/mon_num_below.Rd | 216 +- man/mon_num_equal.Rd | 216 +- man/monavg.Rd | 220 +- man/mondaymean.Rd | 208 +- man/monmax.Rd | 208 +- man/monmean.Rd | 220 +- man/monmin.Rd | 208 +- man/monpctl.Rd | 220 +- man/monsd.Rd | 210 +- man/monsum.Rd | 208 +- man/monvar.Rd | 210 +- man/muldpm.Rd | 194 +- man/multimonmean.Rd | 222 +- man/multimonsum.Rd | 220 +- man/ncinfo.Rd | 126 - man/num_above.Rd | 206 +- man/num_below.Rd | 206 +- man/num_equal.Rd | 206 +- man/read_file.Rd | 39 man/read_ncvar.Rd | 128 - man/remap.Rd | 264 +- man/runmax.Rd | 194 +- man/runmean.Rd | 190 - man/runmin.Rd | 192 +- man/runrange.Rd | 190 - man/runsd.Rd | 194 +- man/runsum.Rd | 194 +- man/seas.anomaly.Rd | 184 - man/seasmean.Rd | 188 - man/seassd.Rd | 188 - man/seassum.Rd | 188 - man/seasvar.Rd | 188 - man/sellonlatbox.Rd | 212 +- man/selmon.Rd | 192 +- man/selperiod.Rd | 198 +- man/selpoint.Rd | 216 +- man/selpoint.multi.Rd | 254 +- man/seltime.Rd | 192 +- man/selyear.Rd | 194 +- man/timavg.Rd | 210 +- man/timcor.Rd | 214 +- man/timcovar.Rd | 214 +- man/timcumsum.Rd | 86 man/timmax.Rd | 196 +- man/timmean.Rd | 198 +- man/timmin.Rd | 196 +- man/timpctl.Rd | 208 +- man/timsd.Rd | 198 +- man/timselmean.Rd | 174 - man/timselsum.Rd | 178 - man/timsum.Rd | 198 +- man/trend.Rd | 238 +- man/trend_advanced.Rd | 258 +- man/wfldmean.Rd | 184 - man/ydaymax.Rd | 196 +- man/ydaymean.Rd | 198 +- man/ydaymin.Rd | 196 +- man/ydayrange.Rd | 196 +- man/ydaysd.Rd | 198 +- man/ydaysum.Rd | 196 +- man/ydrunmean.Rd | 194 +- man/ydrunsd.Rd | 194 +- man/ydrunsum.Rd | 194 +- man/year.anomaly.Rd | 182 - man/yearmax.Rd | 182 - man/yearmean.Rd | 182 - man/yearmin.Rd | 182 - man/yearrange.Rd | 182 - man/yearsd.Rd | 182 - man/yearsum.Rd | 182 - man/yearvar.Rd | 182 - man/ymonmax.Rd | 210 +- man/ymonmean.Rd | 210 +- man/ymonmedian.Rd | 210 +- man/ymonmin.Rd | 210 +- man/ymonsd.Rd | 210 +- man/ymonsum.Rd | 210 +- man/yseasmax.Rd | 186 - man/yseasmean.Rd | 192 +- man/yseasmin.Rd | 186 - man/yseassd.Rd | 186 - man/zonmean.Rd | 170 - man/zonsum.Rd | 170 - tests/spelling.R | 6 tests/testdata/SelpointRef_A.csv | 74 tests/testdata/SelpointRef_B.csv | 74 tests/testthat.R | 8 tests/testthat/create_testdata.R | 2964 +++++++++++++++---------------- tests/testthat/helper.R | 16 tests/testthat/test_add_grid_info.R | 1252 ++++++------- tests/testthat/test_box_mergetime.R | 2314 ++++++++++++------------ tests/testthat/test_change_att.R | 1384 +++++++------- tests/testthat/test_cmsaf.abs.R | 406 ++-- tests/testthat/test_cmsaf.add.R | 1934 ++++++++++---------- tests/testthat/test_cmsaf.addc.R | 1954 ++++++++++---------- tests/testthat/test_cmsaf.cat.R | 1562 ++++++++-------- tests/testthat/test_cmsaf.detrend.R | 394 ++-- tests/testthat/test_cmsaf.div.R | 1978 ++++++++++---------- tests/testthat/test_cmsaf.divc.R | 1808 +++++++++--------- tests/testthat/test_cmsaf.mul.R | 1944 ++++++++++---------- tests/testthat/test_cmsaf.mulc.R | 1946 ++++++++++---------- tests/testthat/test_cmsaf.regres.R | 378 +-- tests/testthat/test_cmsaf.sub.R | 1890 +++++++++---------- tests/testthat/test_cmsaf.subc.R | 1934 ++++++++++---------- tests/testthat/test_dayavg.R | 1376 +++++++------- tests/testthat/test_daymax.R | 1376 +++++++------- tests/testthat/test_daymean.R | 1376 +++++++------- tests/testthat/test_daymin.R | 1376 +++++++------- tests/testthat/test_daypctl.R | 1376 +++++++------- tests/testthat/test_dayrange.R | 1256 ++++++------- tests/testthat/test_daysd.R | 1376 +++++++------- tests/testthat/test_daysum.R | 1376 +++++++------- tests/testthat/test_dayvar.R | 1376 +++++++------- tests/testthat/test_divdpm.R | 1180 ++++++------ tests/testthat/test_extract.level.R | 1546 +++------------- tests/testthat/test_extract.period.R | 744 +++---- tests/testthat/test_fldcor.R | 168 - tests/testthat/test_fldcovar.R | 168 - tests/testthat/test_fldmax.R | 392 ++-- tests/testthat/test_fldmean.R | 390 ++-- tests/testthat/test_fldmin.R | 390 ++-- tests/testthat/test_fldrange.R | 392 ++-- tests/testthat/test_fldsd.R | 392 ++-- tests/testthat/test_fldsum.R | 392 ++-- tests/testthat/test_gridboxmax.R | 244 +- tests/testthat/test_gridboxmean.R | 244 +- tests/testthat/test_gridboxmin.R | 244 +- tests/testthat/test_gridboxrange.R | 244 +- tests/testthat/test_gridboxsd.R | 244 +- tests/testthat/test_gridboxsum.R | 244 +- tests/testthat/test_gridboxvar.R | 244 +- tests/testthat/test_levbox_mergetime.R | 192 +- tests/testthat/test_mermean.R | 184 - tests/testthat/test_mon.anomaly.R | 226 +- tests/testthat/test_monavg.R | 422 ++-- tests/testthat/test_monmax.R | 412 ++-- tests/testthat/test_monmean.R | 410 ++-- tests/testthat/test_monmin.R | 410 ++-- tests/testthat/test_monpctl.R | 428 ++-- tests/testthat/test_monsd.R | 416 ++-- tests/testthat/test_monsum.R | 414 ++-- tests/testthat/test_monvar.R | 428 ++-- tests/testthat/test_muldpm.R | 178 - tests/testthat/test_multimonmean.R | 178 - tests/testthat/test_multimonsum.R | 180 - tests/testthat/test_runmax.R | 188 - tests/testthat/test_runmean.R | 192 +- tests/testthat/test_runmin.R | 190 - tests/testthat/test_runrange.R | 172 - tests/testthat/test_runsd.R | 188 - tests/testthat/test_runsum.R | 190 - tests/testthat/test_seasmean.R | 178 - tests/testthat/test_seassd.R | 260 +- tests/testthat/test_seassum.R | 178 - tests/testthat/test_seasvar.R | 260 +- tests/testthat/test_sellonlatbox.R | 2264 +++++++++++------------ tests/testthat/test_selmon.R | 1834 +++++++++---------- tests/testthat/test_selperiod.R | 1832 +++++++++---------- tests/testthat/test_selpoint.R | 1728 +++++++++--------- tests/testthat/test_selpoint.multi.R | 144 - tests/testthat/test_seltime.R | 1518 +++++++-------- tests/testthat/test_selyear.R | 1832 +++++++++---------- tests/testthat/test_timavg.R | 1462 +++++++-------- tests/testthat/test_timcor.R | 234 +- tests/testthat/test_timcovar.R | 232 +- tests/testthat/test_timcumsum.R | 762 +++---- tests/testthat/test_timmax.R | 1612 ++++++++-------- tests/testthat/test_timmean.R | 1462 +++++++-------- tests/testthat/test_timmin.R | 1612 ++++++++-------- tests/testthat/test_timpctl.R | 1922 ++++++++++---------- tests/testthat/test_timsd.R | 1608 ++++++++-------- tests/testthat/test_timselmean.R | 192 +- tests/testthat/test_timselsum.R | 192 +- tests/testthat/test_timsum.R | 1460 +++++++-------- tests/testthat/test_wfldmean.R | 382 +-- tests/testthat/test_ydaymax.R | 534 ++--- tests/testthat/test_ydaymean.R | 508 ++--- tests/testthat/test_ydaymin.R | 534 ++--- tests/testthat/test_ydayrange.R | 466 ++-- tests/testthat/test_ydaysd.R | 466 ++-- tests/testthat/test_ydaysum.R | 534 ++--- tests/testthat/test_ydrunmean.R | 242 +- tests/testthat/test_ydrunsd.R | 246 +- tests/testthat/test_ydrunsum.R | 238 +- tests/testthat/test_year.anomaly.R | 386 ++-- tests/testthat/test_yearmax.R | 406 ++-- tests/testthat/test_yearmean.R | 388 ++-- tests/testthat/test_yearmin.R | 406 ++-- tests/testthat/test_yearrange.R | 406 ++-- tests/testthat/test_yearsd.R | 406 ++-- tests/testthat/test_yearsum.R | 396 ++-- tests/testthat/test_yearvar.R | 406 ++-- tests/testthat/test_ymonmax.R | 886 ++++----- tests/testthat/test_ymonmean.R | 408 ++-- tests/testthat/test_ymonmin.R | 408 ++-- tests/testthat/test_ymonsd.R | 414 ++-- tests/testthat/test_ymonsum.R | 408 ++-- tests/testthat/test_yseasmax.R | 404 ++-- tests/testthat/test_yseasmean.R | 404 ++-- tests/testthat/test_yseasmin.R | 404 ++-- tests/testthat/test_yseassd.R | 408 ++-- tests/testthat/test_zonmean.R | 176 - tests/testthat/test_zonsum.R | 176 - 507 files changed, 79228 insertions(+), 80102 deletions(-)
Title: Sparse Gaussian Graphical Modeling with Variable Clustering
Description: Perform sparse estimation of a Gaussian graphical model (GGM) with node aggregation through variable clustering. Currently, the package implements the clusterpath estimator of the Gaussian graphical model (CGGM) (Touw, Alfons, Groenen & Wilms, 2025; <doi:10.48550/arXiv.2407.00644>).
Author: Daniel J.W. Touw [aut] ,
Andreas Alfons [aut, cre] ,
Ines Wilms [aut] ,
Patrick J.F. Groenen [ths]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between clusterGGM versions 0.1.0 dated 2025-10-17 and 0.1.1 dated 2025-10-22
clusterGGM-0.1.0/clusterGGM/src/clock.h |only clusterGGM-0.1.1/clusterGGM/DESCRIPTION | 8 +- clusterGGM-0.1.1/clusterGGM/MD5 | 16 ++--- clusterGGM-0.1.1/clusterGGM/NEWS |only clusterGGM-0.1.1/clusterGGM/R/cggm.R | 3 - clusterGGM-0.1.1/clusterGGM/R/cggm_wrapper.R | 2 clusterGGM-0.1.1/clusterGGM/build/partial.rdb |binary clusterGGM-0.1.1/clusterGGM/man/cggm.Rd | 3 - clusterGGM-0.1.1/clusterGGM/src/cggm_export.cpp | 66 ------------------------ clusterGGM-0.1.1/clusterGGM/src/utils.cpp | 14 +++++ 10 files changed, 26 insertions(+), 86 deletions(-)
Title: Latent Space Item Response Model
Description: Analysis of dichotomous and continuous response data using latent factor by both 1PL LSIRM and 2PL LSIRM as described in Jeon et al. (2021) <doi:10.1007/s11336-021-09762-5>. It includes original 1PL LSIRM and 2PL LSIRM provided for binary response data and its extension for continuous response data. Bayesian model selection with spike-and-slab prior and method for dealing data with missing value under missing at random, missing completely at random are also supported. Various diagnostic plots are available to inspect the latent space and summary of estimated parameters.
Author: Dongyoung Go [aut],
Gwanghee Kim [aut, cre],
Jina Park [aut],
Ickhoon Jin [ctb],
Minjeong Jeon [ctb]
Maintainer: Gwanghee Kim <musagh08@yonsei.ac.kr>
Diff between lsirm12pl versions 1.3.8 dated 2025-10-14 and 1.3.9 dated 2025-10-22
DESCRIPTION | 8 MD5 | 162 ++++++------- R/RcppExports.R | 144 ++++++------ R/lsirm.R | 243 ++++++++++---------- R/lsirm1pl_fixed_gamma.R | 11 R/lsirm1pl_fixed_gamma_mar.R | 10 R/lsirm1pl_fixed_gamma_mcar.R | 11 R/lsirm1pl_mar.R | 9 R/lsirm1pl_mar_ss.R | 14 - R/lsirm1pl_mcar.R | 9 R/lsirm1pl_mcar_ss.R | 8 R/lsirm1pl_normal_fixed_gamma.R | 12 - R/lsirm1pl_normal_fixed_gamma_mar.R | 14 - R/lsirm1pl_normal_fixed_gamma_mcar.R | 14 - R/lsirm1pl_normal_mar.R | 16 - R/lsirm1pl_normal_mar_ss.R | 18 - R/lsirm1pl_normal_mcar.R | 17 - R/lsirm1pl_normal_mcar_ss.R | 18 - R/lsirm1pl_normal_o.R | 12 - R/lsirm1pl_normal_ss.R | 18 - R/lsirm1pl_o.R | 8 R/lsirm1pl_ss.R | 8 R/lsirm2pl_fixed_gamma.R | 12 - R/lsirm2pl_fixed_gamma_mar.R | 14 - R/lsirm2pl_fixed_gamma_mcar.R | 14 - R/lsirm2pl_mar.R | 14 - R/lsirm2pl_mar_ss.R | 18 - R/lsirm2pl_mcar.R | 14 - R/lsirm2pl_mcar_ss.R | 18 - R/lsirm2pl_normal_fixed_gamma.R | 14 - R/lsirm2pl_normal_fixed_gamma_mar.R | 16 - R/lsirm2pl_normal_fixed_gamma_mcar.R | 16 - R/lsirm2pl_normal_mar.R | 18 - R/lsirm2pl_normal_mar_ss.R | 18 - R/lsirm2pl_normal_mcar.R | 18 - R/lsirm2pl_normal_mcar_ss.R | 18 - R/lsirm2pl_normal_o.R | 12 - R/lsirm2pl_normal_ss.R | 14 - R/lsirm2pl_o.R | 313 +++++++++++++------------- R/lsirm2pl_ss.R | 16 - man/lsirm1pl.Rd | 6 man/lsirm1pl_fixed_gamma.Rd | 8 man/lsirm1pl_fixed_gamma_mar.Rd | 8 man/lsirm1pl_fixed_gamma_mcar.Rd | 8 man/lsirm1pl_mar.Rd | 8 man/lsirm1pl_mar_ss.Rd | 8 man/lsirm1pl_mcar.Rd | 8 man/lsirm1pl_mcar_ss.Rd | 8 man/lsirm1pl_normal_fixed_gamma.Rd | 8 man/lsirm1pl_normal_fixed_gamma_mar.Rd | 8 man/lsirm1pl_normal_fixed_gamma_mcar.Rd | 8 man/lsirm1pl_normal_mar.Rd | 8 man/lsirm1pl_normal_mar_ss.Rd | 8 man/lsirm1pl_normal_mcar.Rd | 8 man/lsirm1pl_normal_mcar_ss.Rd | 8 man/lsirm1pl_normal_o.Rd | 8 man/lsirm1pl_normal_ss.Rd | 8 man/lsirm1pl_o.Rd | 8 man/lsirm1pl_ss.Rd | 8 man/lsirm2pl.Rd | 9 man/lsirm2pl_fixed_gamma.Rd | 11 man/lsirm2pl_fixed_gamma_mar.Rd | 11 man/lsirm2pl_fixed_gamma_mcar.Rd | 11 man/lsirm2pl_mar.Rd | 11 man/lsirm2pl_mar_ss.Rd | 11 man/lsirm2pl_mcar.Rd | 11 man/lsirm2pl_mcar_ss.Rd | 11 man/lsirm2pl_normal_fixed_gamma.Rd | 11 man/lsirm2pl_normal_fixed_gamma_mar.Rd | 11 man/lsirm2pl_normal_fixed_gamma_mcar.Rd | 11 man/lsirm2pl_normal_mar.Rd | 11 man/lsirm2pl_normal_mar_ss.Rd | 11 man/lsirm2pl_normal_mcar.Rd | 11 man/lsirm2pl_normal_mcar_ss.Rd | 11 man/lsirm2pl_normal_o.Rd | 11 man/lsirm2pl_normal_ss.Rd | 11 man/lsirm2pl_o.Rd | 11 man/lsirm2pl_ss.Rd | 11 src/RcppExports.cpp | 378 +++++++++++++++++++------------- src/lsirm1pl.cpp | 256 ++++++++++++--------- src/lsirm2pl.cpp | 334 +++++++++++++++------------- src/utility_cpp.cpp | 93 ++++--- 82 files changed, 1623 insertions(+), 1156 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp [aut, cre]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.13.1 dated 2025-06-02 and 0.13.2 dated 2025-10-22
DESCRIPTION | 7 MD5 | 512 ++-- NAMESPACE | 400 +-- NEWS | 382 +-- R/00_codeOrganization.R | 44 R/00_steps_to_implement_distribution.R | 20 R/00_steps_to_implement_estimator.R | 18 R/00_steps_to_implement_model.R | 30 R/01_classes.R | 444 ++-- R/02_algebrahelpers_Solve.R | 122 - R/02_algebrahelpers_blockToeplitz.R | 40 R/02_algebrahelpers_checkJacobian.R | 250 +- R/02_algebrahelpers_expected_latent_residual_covs.R | 124 - R/02_algebrahelpers_expectedmodel.R | 48 R/02_algebrahelpers_kronecker.R | 2 R/02_algebrahelpers_lavUtils.R | 48 R/02_algebrahelpers_matrixexponent.R | 20 R/02_algebrahelpers_maxcor.R | 22 R/02_algebrahelpers_modelMatrix.R | 26 R/02_algebrahelpers_quantiletransform.R | 20 R/02_algebrahelpers_spectralshift.R | 50 R/02_algebrahelpers_trysolve.R | 52 R/02_algebrahelpers_vectorize.R | 56 R/02_algebrahelpers_vectorizeMatrices.R | 116 - R/02_algebrahelpers_weighted_geomean.R | 2 R/02_modelformation_PCCPDC.R | 32 R/03_modelformation_adjust_p_values.R | 116 - R/03_modelformation_defaultoptimizer.R | 6 R/03_modelformation_factorstart.R | 40 R/03_modelformation_fixAdj.R | 162 - R/03_modelformation_fixMatrix.R | 160 - R/03_modelformation_fixMu.R | 82 R/03_modelformation_fixTau.R | 170 - R/03_modelformation_formModelMatrices.R | 152 - R/03_modelformation_generateParameterTable.R | 540 ++-- R/03_modelformation_impliedcovstructures.R | 272 +- R/03_modelformation_labtoind.R | 56 R/03_modelformation_matrixSetup_Isingbeta.R | 65 R/03_modelformation_matrixSetup_Isingtau.R | 54 R/03_modelformation_matrixSetup_SD.R | 102 R/03_modelformation_matrixSetup_beta.R | 76 R/03_modelformation_matrixSetup_cholesky.R | 126 - R/03_modelformation_matrixSetup_delta.R | 124 - R/03_modelformation_matrixSetup_isingomega.R | 64 R/03_modelformation_matrixSetup_kappa.R | 134 - R/03_modelformation_matrixSetup_lambda.R | 452 ++-- R/03_modelformation_matrixSetup_mu.R | 68 R/03_modelformation_matrixSetup_omega.R | 200 - R/03_modelformation_matrixSetup_rho.R | 104 R/03_modelformation_matrixSetup_sigma.R | 130 - R/03_modelformation_matrixSetup_tau.R | 74 R/03_modelformation_missingpatterns.R | 314 +- R/03_modelformation_missingpatterns_covs.R | 174 - R/03_modelformation_samplestats.R | 16 R/03_modelformation_samplestats_norawts.R | 1304 ++++++------ R/03_modelformation_samplestats_rawts.R | 192 - R/03_modelformation_sparseordense.R | 90 R/03_modelformation_startvaluesandbounds.R | 104 R/03_modelformation_tsData.R | 344 +-- R/04_generalFit_fitfunction.R | 88 R/04_generalFit_gradient.R | 258 +- R/04_generalFit_logLikelihood.R | 36 R/04_generalfit_FisherInformation.R | 468 ++-- R/04_generalfit_VCOV.R | 28 R/04_generalfit_impliedModel.R | 80 R/04_generalfit_loglikelihood_Ising.R | 176 - R/04_generalfit_loglikelihood_gauss.R | 232 +- R/04_generalfit_prepareModel.R | 154 - R/04_modelformation_matrixSetup_flexcov.R | 138 - R/05_MLestimator_expected_hessian_Gauss.R | 126 - R/05_MLestimator_expected_hessian_Ising.R | 178 - R/05_MLestimator_fit_Gauss.R | 36 R/05_MLestimator_fit_Ising.R | 76 R/05_MLestimator_fitfunction.R | 22 R/05_MLestimator_gradient_Gauss.R | 146 - R/05_MLestimator_gradient_Ising.R | 164 - R/06_ULS_expectedHessian.R | 64 R/06_ULS_fitfunction.R | 154 - R/06_ULS_gradient.R | 124 - R/06_weightsMatrix.R | 76 R/07_FIMLestimator_expected_hessian_Gauss.R | 302 +- R/07_FIMLestimator_fit_Gauss.R | 194 - R/07_FIMLestimator_fitfunction.R | 20 R/07_FIMLestimator_gradient_Gauss.R | 302 +- R/08_outputHelpers_NAtoFALSE.R | 4 R/08_outputHelpers_NAtoTRUE.R | 4 R/08_outputHelpers_goodNum.R | 92 R/08_outputHelpers_logo.R | 72 R/09_modelmodification_clearpars.R | 40 R/09_modelmodifivation_emergencystart.R | 166 - R/14_varcov_derivatives.R | 434 ++-- R/14_varcov_implied.R | 92 R/14_varcov_prepare.R | 136 - R/15_lvm_derivatives.R | 428 +-- R/15_lvm_identify.R | 436 ++-- R/15_lvm_implied.R | 122 - R/15_lvm_prepare.R | 122 - R/16_var1_derivatives.R | 362 +-- R/16_var1_implied.R | 150 - R/16_var1_prepare.R | 188 - R/18_dlvm1_derivatives.R | 814 +++---- R/18_dlvm1_identify.R | 518 ++-- R/18_dlvm1_implied.R | 258 +- R/18_dlvm1_prepare.R | 116 - R/19_tsdlvm1_derivatives.R | 424 +-- R/19_tsdlvm1_identify.R | 396 +-- R/19_tsdlvm1_implied.R | 218 +- R/19_tsdlvm1_prepare.R | 116 - R/20_meta_varcov_derivatives.R | 584 ++--- R/20_meta_varcov_implied.R | 148 - R/20_meta_varcov_prepare.R | 98 R/21_Ising_derivatives.R | 57 R/21_Ising_helperfunctions.R | 32 R/21_Ising_identify.R | 146 - R/21_Ising_implied.R | 33 R/21_Ising_prepare.R | 128 - R/22_ml_lvm_derivatives.R | 424 +-- R/22_ml_lvm_identify.R | 576 ++--- R/22_ml_lvm_implied.R | 258 +- R/22_ml_lvm_prepare.R | 116 - R/RcppExports.R | 1342 ++++++------ R/a_models_Ising.R | 478 ++-- R/a_models_bifactor.R | 90 R/a_models_cholesky.R | 18 R/a_models_corr.R | 18 R/a_models_dlvm1.R | 2166 ++++++++++---------- R/a_models_frombootnet.R | 78 R/a_models_ggm.R | 18 R/a_models_gvar.R | 8 R/a_models_joingroups.R | 244 +- R/a_models_latentgrowth.R | 198 - R/a_models_lnm.R | 6 R/a_models_lrnm.R | 6 R/a_models_lvm.R | 858 +++---- R/a_models_meta_ggm.R | 4 R/a_models_meta_varcov.R | 1310 ++++++------ R/a_models_ml_lnm.R | 4 R/a_models_ml_lrnm.R | 4 R/a_models_ml_lvm.R | 1196 +++++------ R/a_models_ml_rnm.R | 4 R/a_models_ml_tsdlvm1.R | 356 +-- R/a_models_ml_tslvgvar.R | 44 R/a_models_panelgvar.R | 154 - R/a_models_precision.R | 18 R/a_models_ri_clpm.R | 450 ++-- R/a_models_rnm.R | 6 R/a_models_sem.R | 6 R/a_models_tsdlvm1.R | 826 +++---- R/a_models_tslvgvar.R | 6 R/a_models_var1.R | 642 ++--- R/a_models_varcov.R | 812 +++---- R/b_modelexpansions_addMIs.R | 450 ++-- R/b_modelexpansions_addSEs.R | 206 - R/b_modelexpansions_addfit.R | 560 ++--- R/b_modelexpansions_identify.R | 70 R/b_modelexpansions_updateModel.R | 32 R/c_runmodel.R | 1732 +++++++-------- R/d_stepup.R | 890 ++++---- R/e_modelmodifications_fixpar.R | 218 +- R/e_modelmodifications_fixstart.R | 72 R/e_modelmodifications_freepar.R | 264 +- R/e_modelmodifications_groupequal.R | 266 +- R/e_modelmodifications_groupfree.R | 252 +- R/e_modelmodifications_intersectionmodel.R | 414 +-- R/e_modelmodifications_partialprune.R | 708 +++--- R/e_modelmodifications_prune.R | 634 ++--- R/e_modelmodifications_ri_clpm_stationarity.R | 214 - R/e_modelmodifications_setequal.R | 110 - R/e_modelmodifications_transmod.R | 574 ++--- R/e_modelmodifications_unionmodel.R | 404 +-- R/f_conveneince_changedata.R | 168 - R/f_conveneince_fake_optimr.R | 60 R/f_conveneince_generate.R | 66 R/f_conveneince_setEstimator.R | 6 R/f_conveneince_setoptimizer.R | 56 R/f_conveneince_setverbose.R | 8 R/f_conveneince_usecpp.R | 22 R/f_convenience_CIplot.R | 878 ++++---- R/f_convenience_MIs.R | 268 +- R/f_convenience_aggregate_bootstraps.R | 414 +-- R/f_convenience_bootstrap.R | 174 - R/f_convenience_bootstrap_SEs.R | 12 R/f_convenience_bootstrap_warning.R | 4 R/f_convenience_covML.R | 24 R/f_convenience_ergodicity.R | 450 ++-- R/f_convenience_factorscores.R | 164 - R/f_convenience_fit.R | 98 R/f_convenience_getmatrix.R | 298 +- R/f_convenience_logbook.R | 84 R/f_convenience_parameters.R | 346 +-- R/f_convenience_printMethod.R | 236 +- R/f_convenience_printMethod_bootstrap.R | 180 - R/f_convenience_residuals.R | 64 R/f_convenience_simplestructure.R | 22 R/g_simulations_replicator.R | 154 - R/h_modelsearch.R | 878 ++++---- build/partial.rdb |binary man/CIplot.Rd | 232 +- man/Ising.Rd | 366 +-- man/Jonas.Rd | 64 man/MIs.Rd | 134 - man/StarWars.Rd | 76 man/aggregate_bootstraps.Rd | 64 man/algebraMatrices.Rd | 86 man/bifactor.Rd | 72 man/bootstrap.Rd | 78 man/changedata.Rd | 82 man/convenience.Rd | 116 - man/covML.Rd | 94 man/diagnostics.Rd | 106 man/dlvm1_family.Rd | 482 ++-- man/emergencystart.Rd | 54 man/esa.Rd | 140 - man/factorscores.Rd | 56 man/fit.Rd | 96 man/fixpar_freepar.Rd | 126 - man/fixstart.Rd | 68 man/generate.Rd | 54 man/getVCOV.Rd | 56 man/getmatrix.Rd | 134 - man/groupequal_groupfree.Rd | 108 man/latentgrowth.Rd | 146 - man/logbook.Rd | 52 man/lvm_family.Rd | 1102 +++++----- man/meta_varcov.Rd | 268 +- man/ml_lvm.Rd | 396 +-- man/ml_tsdlvm1.Rd | 124 - man/modelsearch.Rd | 182 - man/modelupdate.Rd | 102 man/parameters.Rd | 96 man/parequal.Rd | 80 man/partialprune.Rd | 190 - man/prune.Rd | 182 - man/psychonetrics-class.Rd | 128 - man/psychonetrics-package.Rd | 50 man/psychonetrics_bootstrap-class.Rd | 88 man/psychonetrics_log-class.Rd | 68 man/ri_clpm.Rd | 128 - man/runmodel.Rd | 186 - man/setverbose.Rd | 52 man/simplestructure.Rd | 44 man/stepup.Rd | 204 - man/transmod.Rd | 158 - man/tsdlvm1_family.Rd | 426 +-- man/unionmodel_intersectionmodel.Rd | 94 man/var1_family.Rd | 478 ++-- man/varcov_family.Rd | 478 ++-- src/02_algebrahelpers_RcppHelpers.cpp | 4 src/05_MLestimator_gradient_Ising_cpp.cpp | 2 src/06_ULS_fitfunction_cpp.cpp | 2 src/06_ULS_gradient_cpp.cpp | 2 src/06_WLS_Wmat.cpp | 6 src/14_varcov_derivatives_cpp.cpp | 6 src/21_Ising_derivatives.cpp | 13 src/21_Ising_expectedHessian.cpp | 2 src/21_Ising_implied_cpp.cpp | 43 src/21_Ising_prepare_cpp.cpp | 5 257 files changed, 27068 insertions(+), 26941 deletions(-)
Title: Describe, Package, and Share Biodiversity Data
Description: The Darwin Core data standard is widely used to share
biodiversity information, most notably by the Global Biodiversity Information
Facility and its partner nodes; but converting data to this standard can be
tricky. 'galaxias' is functionally similar to 'devtools', but with a focus on
building Darwin Core Archives rather than R packages, enabling data to be
shared and re-used with relative ease. For details see
Wieczorek and colleagues (2012) <doi:10.1371/journal.pone.0029715>.
Author: Martin Westgate [aut, cre],
Shandiya Balasubramaniam [aut],
Dax Kellie [aut]
Maintainer: Martin Westgate <martin.westgate@csiro.au>
Diff between galaxias versions 0.1.0 dated 2025-07-07 and 0.1.1 dated 2025-10-22
DESCRIPTION | 6 MD5 | 24 +-- NEWS.md | 7 R/build_archive.R | 3 R/use_data.R | 6 build/vignette.rds |binary inst/doc/events-example.R | 4 inst/doc/events-example.html | 8 - inst/doc/occurrences-example.R | 4 inst/doc/occurrences-example.html | 255 +++++++++++++++++------------------- inst/doc/quick_start_guide.R | 82 +++++------ tests/testthat/test-build_archive.R | 6 tests/testthat/test-use_data.R | 20 ++ 13 files changed, 229 insertions(+), 196 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis.
Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included.
The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000).
Other references include:
a) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2018). "An elliptically symmetric angular Gaussian distribution". Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>.
b) Tsagris M. and Alenazi A. (2019). "Comparison of discriminant analysis methods on the sphere". Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>.
c) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2020). "Spherical regression models with general covariates and anisotropic errors". Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872 [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Christos Adam [aut],
Zehao Yu [aut],
Anamul Sajib [ctb],
Eli Amson [ctb],
Micah J. Waldstein [ctb],
Panagiotis Papastamoulis [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 7.2 dated 2025-07-02 and 7.3 dated 2025-10-22
DESCRIPTION | 12 +++++----- MD5 | 54 ++++++++++++++++++++++----------------------- R/cardio.mle.R | 23 ++++++++++++------- R/group.gof.R | 1 R/kuiper.R | 1 R/tang.conc.R | 1 R/watson.R | 1 man/Directional-package.Rd | 8 +++++- man/bic.mixvmf.Rd | 3 +- man/dirda.Rd | 3 +- man/dirda.cv.Rd | 4 +-- man/dmixvmf.Rd | 3 +- man/dsespc.Rd | 2 - man/dvm.Rd | 6 ++--- man/iag.reg.Rd | 7 ++--- man/mixvmf.mle.Rd | 3 +- man/pc.test.Rd | 6 ++--- man/rmixvmf.Rd | 3 +- man/rsespc.Rd | 6 +++-- man/score.cipc.Rd | 4 ++- man/sespc.mle.Rd | 4 ++- man/sespc.reg.Rd | 6 +++-- man/spcauchy2test.Rd | 3 +- man/spher.sespc.contour.Rd | 4 ++- man/spml.mle.Rd | 7 +++-- man/vmf.contour.Rd | 3 +- man/vmf.mle.Rd | 9 ++++--- man/vmfreg.Rd | 3 +- 28 files changed, 112 insertions(+), 78 deletions(-)
Title: Harness ArcGIS Data Services
Description: Enables users of 'ArcGIS Enterprise', 'ArcGIS Online', or
'ArcGIS Platform' to read, write, publish, or manage vector and raster
data via ArcGIS location services REST API endpoints
<https://developers.arcgis.com/rest/>.
Author: Josiah Parry [aut, cre] ,
Eli Pousson [ctb] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb] ,
Antony Barja [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgislayers versions 0.5.0 dated 2025-09-19 and 0.5.1 dated 2025-10-22
arcgislayers-0.5.0/arcgislayers/man/figures/README-unnamed-chunk-16-1.png |only arcgislayers-0.5.0/arcgislayers/man/figures/README-unnamed-chunk-4-1.png |only arcgislayers-0.5.0/arcgislayers/man/figures/README-unnamed-chunk-7-1.png |only arcgislayers-0.5.0/arcgislayers/man/figures/README-unnamed-chunk-8-1.png |only arcgislayers-0.5.1/arcgislayers/DESCRIPTION | 6 arcgislayers-0.5.1/arcgislayers/MD5 | 52 - arcgislayers-0.5.1/arcgislayers/NEWS.md | 8 arcgislayers-0.5.1/arcgislayers/R/arc-add-delete.R | 2 arcgislayers-0.5.1/arcgislayers/R/arc-read.R | 72 + arcgislayers-0.5.1/arcgislayers/R/import-standalone-obj-type.R | 46 - arcgislayers-0.5.1/arcgislayers/R/import-standalone-types-check.R | 281 +++--- arcgislayers-0.5.1/arcgislayers/man/encode_field_values.Rd | 7 arcgislayers-0.5.1/arcgislayers/man/modify.Rd | 2 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-arc-select-respect-crs.R | 1 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-arc_raster.R | 1 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-arc_select.R | 9 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-attachments.R | 23 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-date-parsing.R | 1 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-encode-field-values.R | 445 ---------- arcgislayers-0.5.1/arcgislayers/tests/testthat/test-get-layer.R | 61 + arcgislayers-0.5.1/arcgislayers/tests/testthat/test-get-layers.R | 60 + arcgislayers-0.5.1/arcgislayers/tests/testthat/test-map-services.R | 5 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-page-size.R | 2 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-pbf.R | 6 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-raster-fns.R | 4 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-return-geometry.R | 4 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-returned-fields.R | 27 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-unset-token.R | 1 arcgislayers-0.5.1/arcgislayers/tests/testthat/test-update-fields.R | 8 29 files changed, 462 insertions(+), 672 deletions(-)
Title: Plotting Decision Curve Analysis with Coloured Bars
Description: Decision curve analysis is a method for evaluating and comparing prediction models that incorporates clinical consequences, requires only the data set on which the models are tested, and can be applied to models that have either continuous or dichotomous results. The 'ggscidca' package adds coloured bars of discriminant relevance to the traditional decision curve. Improved practicality and aesthetics. This method was described by Balachandran VP (2015) <doi:10.1016/S1470-2045(14)71116-7>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>
Diff between ggscidca versions 0.2.5 dated 2025-09-05 and 0.2.6 dated 2025-10-22
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- NAMESPACE | 1 + R/scidca.coxph.R | 1 + R/scidca.scisvycoxph.R |only man/scidca.scisvycoxph.Rd |only 6 files changed, 10 insertions(+), 6 deletions(-)