Title: Analysis and Visualization of Basketball Data
Description: Contains data and code to accompany the book
P. Zuccolotto and M. Manisera (2020) Basketball Data Science. Applications with R. CRC Press. ISBN 9781138600799.
Author: Marco Sandri [aut, cre] ,
Paola Zuccolotto [aut] ,
Marica Manisera [aut]
Maintainer: Marco Sandri <basketballanalyzer.help@unibs.it>
Diff between BasketballAnalyzeR versions 0.8.0 dated 2025-04-17 and 0.8.1 dated 2025-10-30
BasketballAnalyzeR-0.8.0/BasketballAnalyzeR/R/scoredifference.R |only BasketballAnalyzeR-0.8.0/BasketballAnalyzeR/man/scoredifference.Rd |only BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/DESCRIPTION | 18 ++-- BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/MD5 | 22 ++--- BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/NAMESPACE | 1 BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/barline.R | 2 BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/drawNBAcourt.R | 44 +++++----- BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/expectedpts.R | 4 BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/plot.inequality.R | 6 - BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/plot.simplereg.R | 4 BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/scoringprob.R | 4 BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/R/shotchart.R | 36 +++++--- BasketballAnalyzeR-0.8.1/BasketballAnalyzeR/build/stage23.rdb |binary 13 files changed, 75 insertions(+), 66 deletions(-)
More information about BasketballAnalyzeR at CRAN
Permanent link
Title: Package Documentation Websites with 'Quarto', 'Docsify',
'Docute', or 'MkDocs'
Description: This is a simple and powerful package to create, render, preview,
and deploy documentation websites for 'R' packages. It is a lightweight and
flexible alternative to 'pkgdown', with support for many documentation
generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.
Author: Etienne Bacher [aut, cre, cph],
Vincent Arel-Bundock [aut]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between altdoc versions 0.6.0 dated 2025-09-19 and 0.7.0 dated 2025-10-30
altdoc-0.6.0/altdoc/tests/testthat/DESCRIPTION |only altdoc-0.6.0/altdoc/tests/testthat/_snaps/rd2qmd.md |only altdoc-0.7.0/altdoc/DESCRIPTION | 14 altdoc-0.7.0/altdoc/LICENSE | 4 altdoc-0.7.0/altdoc/MD5 | 137 - altdoc-0.7.0/altdoc/NAMESPACE | 12 altdoc-0.7.0/altdoc/NEWS.md | 23 altdoc-0.7.0/altdoc/R/render_docs.R | 3 altdoc-0.7.0/altdoc/R/settings_mkdocs.R | 27 altdoc-0.7.0/altdoc/R/setup_docs.R | 3 altdoc-0.7.0/altdoc/R/utils.R | 80 altdoc-0.7.0/altdoc/README.md | 488 ++-- altdoc-0.7.0/altdoc/build/vignette.rds |binary altdoc-0.7.0/altdoc/inst/doc/get-started.R | 6 altdoc-0.7.0/altdoc/inst/doc/get-started.Rmd | 10 altdoc-0.7.0/altdoc/inst/doc/get-started.html | 1136 +++++----- altdoc-0.7.0/altdoc/inst/docsify/docsify.html | 90 altdoc-0.7.0/altdoc/inst/docsify/docsify.md | 18 altdoc-0.7.0/altdoc/inst/docute/docute.html | 104 altdoc-0.7.0/altdoc/inst/gha/altdoc.yaml | 146 - altdoc-0.7.0/altdoc/inst/mkdocs/mkdocs.yml | 80 altdoc-0.7.0/altdoc/inst/preamble/preamble_man_qmd.yml | 12 altdoc-0.7.0/altdoc/inst/preamble/preamble_vignettes_qmd.yml | 12 altdoc-0.7.0/altdoc/inst/preamble/preamble_vignettes_rmd.yml | 8 altdoc-0.7.0/altdoc/inst/quarto_website/quarto_website.yml | 84 altdoc-0.7.0/altdoc/man/preview_docs.Rd | 62 altdoc-0.7.0/altdoc/man/render_docs.Rd | 4 altdoc-0.7.0/altdoc/man/setup_docs.Rd | 168 - altdoc-0.7.0/altdoc/man/setup_github_actions.Rd | 50 altdoc-0.7.0/altdoc/tests/testthat.R | 8 altdoc-0.7.0/altdoc/tests/testthat/_snaps/docsify/render_docs |only altdoc-0.7.0/altdoc/tests/testthat/_snaps/docsify/render_docs.md | 102 altdoc-0.7.0/altdoc/tests/testthat/_snaps/docute/render_docs |only altdoc-0.7.0/altdoc/tests/testthat/_snaps/mkdocs/render_docs |only altdoc-0.7.0/altdoc/tests/testthat/_snaps/mkdocs/render_docs.md | 498 ++-- altdoc-0.7.0/altdoc/tests/testthat/_snaps/rd2qmd |only altdoc-0.7.0/altdoc/tests/testthat/_snaps/render_docs.md |only altdoc-0.7.0/altdoc/tests/testthat/examples/examples-man/between.Rd | 36 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-man/between.md | 80 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-man/is-internal.Rd | 36 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-man/should-fail.Rd | 34 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-qmd/with-preamble.qmd | 26 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-qmd/without-preamble.qmd | 16 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-vignettes/several-outputs.Rmd | 48 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-vignettes/with-figure.Rmd | 50 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-yaml/basic.Rmd | 20 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-yaml/options.Rmd | 28 altdoc-0.7.0/altdoc/tests/testthat/examples/examples-yaml/several-outputs.Rmd | 32 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/NEWS.md | 18 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/README.Rmd | 82 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/README.md | 72 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/man/examplesIf_false.Rd | 44 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/man/examplesIf_true.Rd | 44 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/man/hello_base.Rd | 74 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/man/hello_r6.Rd | 178 - altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.altdoc/vignettes/test.Rmd | 42 altdoc-0.7.0/altdoc/tests/testthat/examples/testpkg.lifecycle/DESCRIPTION | 3 altdoc-0.7.0/altdoc/tests/testthat/test-check_md_structure.R | 1 altdoc-0.7.0/altdoc/tests/testthat/test-rd2qmd.R | 2 altdoc-0.7.0/altdoc/tests/testthat/test-render_docs.R | 190 + altdoc-0.7.0/altdoc/tests/testthat/test-setup_docs.R | 35 altdoc-0.7.0/altdoc/vignettes/customize.qmd | 546 ++-- altdoc-0.7.0/altdoc/vignettes/deploy.qmd | 176 - altdoc-0.7.0/altdoc/vignettes/get-started.Rmd | 10 64 files changed, 2785 insertions(+), 2527 deletions(-)
Title: Useful Functions for Harmonized W4M Tool Development
Description: Provides a set of utility function to prevent the spread of
utility scripts in W4M (Workflow4Metabolomics) tools, and centralize
them in a single package.
To note, some are meant to be replaced by the use of dedicated packages in the future, like
the parse_args() function: it is here only to prepare the ground for
more global changes in W4M scripts and tools.
This package is used by part of the W4M Galaxy modules, some of them
being available on the community-maintained GitHub repository for
Metabolomics' Galaxy tools <https://github.com/workflow4metabolomics/tools-metabolomics>.
See Delporte et al (2025) <doi:10.1002/cpz1.70095> for more details.
Author: Lain Pavot [aut],
Melanie Petera [aut, cre],
Helge Hecht [ctb]
Maintainer: Melanie Petera <melanie.petera@inrae.fr>
This is a re-admission after prior archival of version 1.0.0 dated 2023-09-08
Diff between W4MRUtils versions 1.0.0 dated 2023-09-08 and 1.2.1 dated 2025-10-30
DESCRIPTION | 33 MD5 | 193 - NAMESPACE | 117 - NEWS.md |only R/Filtering_datasets.R |only R/RcheckLibrary.R | 486 ++-- R/dataframe_helpers.R | 228 - R/galaxy.R | 1103 ++++----- R/intensity_checks.R |only R/logging.R | 1103 ++++----- R/miniTools.R | 1145 ++++------ R/optparse_helper.R | 591 ++--- R/utils.R | 1010 ++++---- README.md | 54 build/vignette.rds |binary inst/doc/W4MRUtils.R | 4 inst/doc/W4MRUtils.Rmd | 373 +-- inst/doc/W4MRUtils.html | 399 ++- inst/doc/logging.R | 2 inst/doc/logging.Rmd | 258 +- inst/doc/logging.html | 258 +- inst/doc/parse_arguments.R | 2 inst/doc/parse_arguments.Rmd | 164 - inst/doc/parse_arguments.html | 282 +- inst/extdata/example_df_read_table.csv | 10 man/Filtering_datasets.Rd |only man/W4MLogger.Rd | 126 - man/W4MLogger_-sub-info-warning-error-debug-verbose-close-brace.Rd | 70 man/W4MLogger_.message__.Rd | 66 man/W4MLogger_add_out_paths.Rd | 18 man/W4MLogger_finalize.Rd | 52 man/W4MLogger_set_debug.Rd | 32 man/W4MLogger_set_error.Rd | 32 man/W4MLogger_set_info.Rd | 32 man/W4MLogger_set_out_paths.Rd | 18 man/W4MLogger_set_verbose.Rd | 32 man/W4MLogger_set_warning.Rd | 32 man/check_err.Rd | 42 man/check_one_character.Rd | 138 - man/check_one_complex.Rd | 138 - man/check_one_integer.Rd | 138 - man/check_one_logical.Rd | 138 - man/check_one_numeric.Rd | 138 - man/check_param_type_n_length.Rd | 343 +- man/check_parameter_length.Rd | 325 +- man/check_parameter_type.Rd | 325 +- man/collapse.Rd | 51 man/collapse_lines.Rd | 51 man/convert_parameters.Rd | 80 man/df_force_numeric.Rd | 60 man/df_is.Rd | 72 man/df_read_table.Rd | 82 man/generic_filter.Rd |only man/get_base_dir.Rd | 36 man/get_logger.Rd | 117 - man/get_r_env.Rd | 42 man/import2.Rd | 128 - man/import3.Rd | 144 - man/in_galaxy_env.Rd | 30 man/intens_check.Rd |only man/intensity_checks.Rd |only man/match2.Rd | 52 man/match3.Rd | 50 man/metab_merge.Rd |only man/mini_tools.Rd | 33 man/optparse_character.Rd | 86 man/optparse_flag.Rd | 94 man/optparse_integer.Rd | 86 man/optparse_list.Rd | 144 - man/optparse_numeric.Rd | 86 man/optparse_parameters.Rd | 166 - man/parse_args.Rd | 152 - man/printf.Rd | 59 man/printfp.Rd | 94 man/printp.Rd | 59 man/reproduce_id.Rd | 104 man/run_galaxy_function.Rd | 73 man/run_galaxy_processing.Rd | 378 +-- man/show_galaxy_footer.Rd | 105 man/show_galaxy_header.Rd | 135 - man/show_sys.Rd | 41 man/shy_lib.Rd | 56 man/source_local.Rd | 106 man/stock_id.Rd | 116 - man/stopaste.Rd | 84 man/stopaste0.Rd | 80 man/stopf.Rd | 67 man/unmangle_galaxy_param.Rd | 54 man/unmangle_galaxy_string.Rd | 50 tests/testthat.R | 24 tests/testthat/Rplots.pdf |only tests/testthat/test-Filtering_datasets.R |only tests/testthat/test-RcheckLibrary.R | 516 ++-- tests/testthat/test-dataframe_helpers.R | 254 +- tests/testthat/test-galaxy.R | 256 +- tests/testthat/test-intensity_checks.R |only tests/testthat/test-logging.R | 408 +-- tests/testthat/test-miniTools.R | 754 +++--- tests/testthat/test-optparse-helpers.R | 170 - tests/testthat/test-utils.R | 242 +- vignettes/W4MRUtils.Rmd | 373 +-- vignettes/logging.Rmd | 258 +- vignettes/parse_arguments.Rmd | 164 - 103 files changed, 8310 insertions(+), 8662 deletions(-)
Title: Tools for the Analysis of Ecosystem Metabolism
Description: A collection of tools for the calculation of freewater metabolism
from in situ time series of dissolved oxygen, water temperature, and,
optionally, additional environmental variables. LakeMetabolizer implements
5 different metabolism models with diverse statistical underpinnings:
bookkeeping, ordinary least squares, maximum likelihood, Kalman filter,
and Bayesian. Each of these 5 metabolism models can be combined with
1 of 7 models for computing the coefficient of gas exchange across the
air–water interface (k). LakeMetabolizer also features a variety of
supporting functions that compute conversions and implement calculations
commonly applied to raw data prior to estimating metabolism (e.g., oxygen
saturation and optical conversion models).
Author: Luke Winslow [aut],
Jacob Zwart [cre, aut] ,
Ryan Batt [aut],
Jessica Corman [aut],
Hilary Dugan [aut],
Paul Hanson [aut],
Aline Jaimes [aut],
Jordan Read [aut],
Richard Woolway [aut]
Maintainer: Jacob Zwart <jayzlimno@gmail.com>
Diff between LakeMetabolizer versions 1.5.5 dated 2022-11-15 and 1.5.6 dated 2025-10-30
DESCRIPTION | 14 MD5 | 171 NEWS.md | 43 R/LakeMetabolizer-package.R |only R/addNAs.R | 140 R/byeShort.R | 44 R/calc.lw.net.R | 582 - R/calc.zeng.R | 478 R/date2doy.R | 16 R/getSchmidt.R | 106 R/helper.functions.R | 910 - R/k.cole.R | 52 R/k.crusius.R | 84 R/k.heiskanen.R | 306 R/k.macIntyre.R | 348 R/k.read.R | 2 R/k.read.soloviev.R | 424 R/k.vachon.R | 68 R/k600.2.kGAS.R | 124 R/load.all.data.R | 150 R/load.meta.R | 104 R/metab.bayesian.R | 2 R/metab.bookkeep.R | 244 R/metab.kalman.R | 710 - R/metab.mle.R | 456 R/metab.ols.R | 220 R/o2.at.sat.R | 320 R/par.to.sw.R | 122 R/sun.rise.set.R | 216 R/sw.to.par.R | 118 R/temp.kalman.R | 248 R/wind.scale.R | 128 demo/00Index | 6 inst/CITATION | 42 inst/extdata/mendota.doobs |20156 ++++++++++++++++++------------------ inst/extdata/mendota.meta | 16 inst/extdata/mendota.par |20162 ++++++++++++++++++------------------- inst/extdata/mendota.rh |16820 +++++++++++++++--------------- inst/extdata/mendota.wnd |20158 ++++++++++++++++++------------------ inst/extdata/mendota.wtr |19872 ++++++++++++++++++------------------ inst/extdata/sparkling.airT | 2594 ++-- inst/extdata/sparkling.doobs | 2594 ++-- inst/extdata/sparkling.meta | 16 inst/extdata/sparkling.par | 2594 ++-- inst/extdata/sparkling.rh | 2594 ++-- inst/extdata/sparkling.wnd | 2594 ++-- inst/extdata/sparkling.wtr | 2594 ++-- inst/extdata/troutbog.airT | 2594 ++-- inst/extdata/troutbog.doobs | 2594 ++-- inst/extdata/troutbog.meta | 16 inst/extdata/troutbog.par | 2594 ++-- inst/extdata/troutbog.rh | 2594 ++-- inst/extdata/troutbog.wnd | 2594 ++-- inst/extdata/troutbog.wtr | 2566 ++-- inst/jags/bayes.mod.allk.JAGS | 36 inst/jags/bayes.mod.bothk.JAGS | 42 inst/jags/bayes.mod.nok.JAGS | 32 man/calc.lw.net.Rd | 172 man/calc.zeng.Rd | 110 man/get.Ts.Rd | 56 man/get.vars.Rd | 54 man/getSchmidt.Rd | 72 man/has.vars.Rd | 54 man/is.day.Rd | 54 man/is.night.Rd | 54 man/k.read.Rd | 266 man/k.read.base.Rd | 290 man/k600.2.kGAS.Rd | 106 man/load.all.data.Rd | 68 man/load.meta.Rd | 54 man/metab.Rd | 218 man/metab.bayesian.Rd | 170 man/metab.bookkeep.Rd | 142 man/metab.kalman.Rd | 218 man/metab.mle.Rd | 220 man/metab.ols.Rd | 134 man/o2.at.sat.Rd | 218 man/par.to.sw.Rd | 98 man/rmv.vars.Rd | 62 man/sun.rise.set.Rd | 68 man/sw.to.par.Rd | 102 man/temp.kalman.Rd | 74 man/var.indx.Rd | 56 man/watts.in.Rd | 120 man/wind.scale.Rd | 104 tests/testthat.R | 8 tests/testthat/test_sun.rise.set.R | 44 87 files changed, 69452 insertions(+), 69438 deletions(-)
More information about LakeMetabolizer at CRAN
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Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, rational expectations, endogenous targeting and model renormalization, structural stability, stochastic simulation and forecast, optimal control, by A. Luciani (2022) <doi:10.13140/RG.2.2.31160.83202>.
Author: Andrea Luciani [aut, cre] ,
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
This is a re-admission after prior archival of version 4.1.0 dated 2025-10-20
Diff between bimets versions 4.1.0 dated 2025-10-20 and 4.1.1 dated 2025-10-30
bimets-4.1.0/bimets/vignettes/Thumbs.db |only bimets-4.1.1/bimets/DESCRIPTION | 8 - bimets-4.1.1/bimets/MD5 | 45 ++++---- bimets-4.1.1/bimets/NEWS.md | 6 + bimets-4.1.1/bimets/R/bimets_model_functions.R | 11 -- bimets-4.1.1/bimets/R/bimets_ts_functions.R | 127 ++++++++++++------------- bimets-4.1.1/bimets/README.md | 14 +- bimets-4.1.1/bimets/inst/doc/bimets.R | 17 ++- bimets-4.1.1/bimets/inst/doc/bimets.Rnw | 12 +- bimets-4.1.1/bimets/inst/doc/bimets.pdf |binary bimets-4.1.1/bimets/inst/doc/frb2bimets.R | 11 +- bimets-4.1.1/bimets/inst/doc/frb2bimets.Rnw | 9 + bimets-4.1.1/bimets/inst/doc/frb2bimets.pdf |binary bimets-4.1.1/bimets/man/BIMETS2CSV.Rd | 14 +- bimets-4.1.1/bimets/man/CSV2BIMETS.Rd | 13 +- bimets-4.1.1/bimets/man/MDL.Rd | 8 - bimets-4.1.1/bimets/man/RENORM.Rd | 2 bimets-4.1.1/bimets/man/SIMULATE.Rd | 4 bimets-4.1.1/bimets/man/STOCHSIMULATE.Rd | 2 bimets-4.1.1/bimets/man/bimets-package.Rd | 17 +-- bimets-4.1.1/bimets/man/bimetsDataset.Rd | 1 bimets-4.1.1/bimets/man/idxOver.Rd | 2 bimets-4.1.1/bimets/vignettes/bimets.Rnw | 12 +- bimets-4.1.1/bimets/vignettes/frb2bimets.Rnw | 9 + 24 files changed, 186 insertions(+), 158 deletions(-)
More information about contentanalysis at CRAN
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Title: Extensible Framework for Data Pattern Exploration
Description: A framework for systematic exploration of
association rules (Agrawal et al., 1994, <https://www.vldb.org/conf/1994/P487.PDF>),
contrast patterns (Chen, 2022, <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong et al., 1999, <doi:10.1145/312129.312191>),
subgroup discovery (Atzmueller, 2015, <doi:10.1002/widm.1144>),
and conditional correlations (Hájek, 1978, <doi:10.1007/978-3-642-66943-9>).
User-defined functions may also be supplied to guide custom pattern searches.
Supports both crisp (Boolean) and fuzzy data. Generates candidate conditions
expressed as elementary conjunctions, evaluates them on a dataset, and
inspects the induced sub-data for statistical, logical, or structural
properties such as associations, correlations, or contrasts. Includes methods
for visualization of logical structures and supports interactive exploration
through integrated Shiny applications.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 2.0.0 dated 2025-10-13 and 2.0.2 dated 2025-10-30
nuggets-2.0.0/nuggets/R/dichotomize.R |only nuggets-2.0.0/nuggets/man/dichotomize.Rd |only nuggets-2.0.2/nuggets/DESCRIPTION | 10 nuggets-2.0.2/nuggets/MD5 | 34 nuggets-2.0.2/nuggets/NAMESPACE | 3 nuggets-2.0.2/nuggets/NEWS.md | 12 nuggets-2.0.2/nuggets/R/association_matrix.R |only nuggets-2.0.2/nuggets/R/explore-associations.R | 2 nuggets-2.0.2/nuggets/R/nuggets-package.R | 1 nuggets-2.0.2/nuggets/R/testers.R | 20 nuggets-2.0.2/nuggets/build/vignette.rds |binary nuggets-2.0.2/nuggets/inst/doc/data-preparation.R |only nuggets-2.0.2/nuggets/inst/doc/data-preparation.Rmd |only nuggets-2.0.2/nuggets/inst/doc/data-preparation.html |only nuggets-2.0.2/nuggets/inst/doc/nuggets.R | 143 -- nuggets-2.0.2/nuggets/inst/doc/nuggets.Rmd | 595 ++---------- nuggets-2.0.2/nuggets/inst/doc/nuggets.html | 878 ++++++------------ nuggets-2.0.2/nuggets/man/association_matrix.Rd |only nuggets-2.0.2/nuggets/src/Makevars | 7 nuggets-2.0.2/nuggets/src/dig/CombinatorialProgress.h | 3 nuggets-2.0.2/nuggets/vignettes/data-preparation.Rmd |only nuggets-2.0.2/nuggets/vignettes/nuggets.Rmd | 595 ++---------- 22 files changed, 702 insertions(+), 1601 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.53 dated 2025-08-18 and 0.54 dated 2025-10-30
DESCRIPTION | 8 +++--- MD5 | 30 ++++++++++++------------ R/record.R | 51 ++++++++++++++++++++++++++++++++++++++++-- inst/doc/xfun.Rmd | 12 ++++----- inst/doc/xfun.html | 22 +++++++++--------- man/download_cache.Rd | 2 - man/github_releases.Rd | 2 - man/mime_type.Rd | 2 - man/news2md.Rd | 2 - man/record.Rd | 7 +++++ man/rest_api.Rd | 2 - man/retry.Rd | 2 - man/session_info.Rd | 2 - man/system3.Rd | 2 - tests/test-cran/test-record.R | 16 +++++++++++++ vignettes/xfun.Rmd | 12 ++++----- 16 files changed, 122 insertions(+), 52 deletions(-)
Title: Fundamental Clustering Problems Suite
Description: Over sixty clustering algorithms are provided in this package with consistent input and output, which enables the user to try out algorithms swiftly. Additionally, 26 statistical approaches for the estimation of the number of clusters as well as the mirrored density plot (MD-plot) of clusterability are implemented. The packages is published in Thrun, M.C., Stier Q.: "Fundamental Clustering Algorithms Suite" (2021), SoftwareX, <DOI:10.1016/j.softx.2020.100642>. Moreover, the fundamental clustering problems suite (FCPS) offers a variety of clustering challenges any algorithm should handle when facing real world data, see Thrun, M.C., Ultsch A.: "Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems" (2020), Data in Brief, <DOI:10.1016/j.dib.2020.105501>.
Author: Michael Thrun [aut, cre, cph] ,
Peter Nahrgang [ctr, ctb],
Felix Pape [ctr, ctb],
Vasyl Pihur [ctb],
Guy Brock [ctb],
Susmita Datta [ctb],
Somnath Datta [ctb],
Luis Winckelmann [com],
Alfred Ultsch [dtc, ctb],
Quirin Stier [ctb, rev]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between FCPS versions 1.3.4 dated 2023-10-19 and 1.3.5 dated 2025-10-30
FCPS-1.3.4/FCPS/R/DBscan.R |only FCPS-1.3.4/FCPS/man/DBscan.Rd |only FCPS-1.3.5/FCPS/DESCRIPTION | 31 FCPS-1.3.5/FCPS/MD5 | 40 FCPS-1.3.5/FCPS/NAMESPACE | 20 FCPS-1.3.5/FCPS/R/ClusterAMI.R |only FCPS-1.3.5/FCPS/R/ClusterCreateClassification.R | 19 FCPS-1.3.5/FCPS/R/ClusterNMI.R |only FCPS-1.3.5/FCPS/R/ClusterRedefine.R | 90 FCPS-1.3.5/FCPS/R/DBSCAN.R |only FCPS-1.3.5/FCPS/R/DatabionicSwarmClustering.R | 42 FCPS-1.3.5/FCPS/R/SubspaceClustering.R | 144 FCPS-1.3.5/FCPS/build/partial.rdb |binary FCPS-1.3.5/FCPS/build/vignette.rds |binary FCPS-1.3.5/FCPS/inst/doc/FCPS.R | 208 FCPS-1.3.5/FCPS/inst/doc/FCPS.html | 5057 ++++++++++----------- FCPS-1.3.5/FCPS/man/ClusterAMI.Rd |only FCPS-1.3.5/FCPS/man/ClusterARI.Rd | 2 FCPS-1.3.5/FCPS/man/ClusterCreateClassification.Rd | 114 FCPS-1.3.5/FCPS/man/ClusterNMI.Rd |only FCPS-1.3.5/FCPS/man/ClusterRedefine.Rd | 118 FCPS-1.3.5/FCPS/man/ClusterShannonInfo.Rd | 12 FCPS-1.3.5/FCPS/man/DBSCAN.Rd |only FCPS-1.3.5/FCPS/man/DatabionicSwarmClustering.Rd | 13 FCPS-1.3.5/FCPS/man/SubspaceClustering.Rd | 134 25 files changed, 3048 insertions(+), 2996 deletions(-)
Title: Sorted L1 Penalized Estimation
Description: Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm
(Bogdan et al. 2015). Supported models include
ordinary least-squares regression, binomial regression, multinomial
regression, and Poisson regression. Both dense and sparse predictor
matrices are supported. In addition, the package features predictor
screening rules that enable fast and efficient solutions to high-dimensional
problems.
Author: Johan Larsson [aut, cre] ,
Jonas Wallin [aut] ,
Malgorzata Bogdan [aut] ,
Ewout van den Berg [aut],
Chiara Sabatti [aut],
Emmanuel Candes [aut],
Evan Patterson [aut],
Weijie Su [aut],
Jakub Kala [aut],
Krystyna Grzesiak [aut],
Mathurin Massias [aut], [...truncated...]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between SLOPE versions 1.0.1 dated 2025-07-02 and 1.1.0 dated 2025-10-30
SLOPE-1.0.1/SLOPE/src/slope/clusters.h |only SLOPE-1.0.1/SLOPE/src/slope/constants.h |only SLOPE-1.0.1/SLOPE/src/slope/cv.h |only SLOPE-1.0.1/SLOPE/src/slope/diagnostics.h |only SLOPE-1.0.1/SLOPE/src/slope/estimate_alpha.h |only SLOPE-1.0.1/SLOPE/src/slope/folds.h |only SLOPE-1.0.1/SLOPE/src/slope/jit_normalization.h |only SLOPE-1.0.1/SLOPE/src/slope/logger.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/logistic.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/loss.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/multinomial.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/poisson.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/quadratic.h |only SLOPE-1.0.1/SLOPE/src/slope/losses/setup_loss.h |only SLOPE-1.0.1/SLOPE/src/slope/math.h |only SLOPE-1.0.1/SLOPE/src/slope/normalize.h |only SLOPE-1.0.1/SLOPE/src/slope/ols.h |only SLOPE-1.0.1/SLOPE/src/slope/regularization_sequence.h |only SLOPE-1.0.1/SLOPE/src/slope/score.h |only SLOPE-1.0.1/SLOPE/src/slope/screening.h |only SLOPE-1.0.1/SLOPE/src/slope/slope.h |only SLOPE-1.0.1/SLOPE/src/slope/slope_fit.h |only SLOPE-1.0.1/SLOPE/src/slope/slope_path.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/hybrid.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/hybrid_cd.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/pgd.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/setup_solver.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/slope_threshold.h |only SLOPE-1.0.1/SLOPE/src/slope/solvers/solver.h |only SLOPE-1.0.1/SLOPE/src/slope/sorted_l1_norm.h |only SLOPE-1.0.1/SLOPE/src/slope/threads.h |only SLOPE-1.0.1/SLOPE/src/slope/timer.h |only SLOPE-1.0.1/SLOPE/src/slope/utils.h |only SLOPE-1.1.0/SLOPE/DESCRIPTION | 6 SLOPE-1.1.0/SLOPE/MD5 | 146 ++++++++-------- SLOPE-1.1.0/SLOPE/NEWS.md | 7 SLOPE-1.1.0/SLOPE/R/data.R | 33 +++ SLOPE-1.1.0/SLOPE/README.md | 5 SLOPE-1.1.0/SLOPE/build/partial.rdb |only SLOPE-1.1.0/SLOPE/data/glioma.rda |only SLOPE-1.1.0/SLOPE/inst/WORDLIST | 21 ++ SLOPE-1.1.0/SLOPE/inst/doc/introduction.html | 13 - SLOPE-1.1.0/SLOPE/inst/doc/solvers.html | 13 - SLOPE-1.1.0/SLOPE/inst/include |only SLOPE-1.1.0/SLOPE/man/glioma.Rd |only SLOPE-1.1.0/SLOPE/man/student.Rd | 7 SLOPE-1.1.0/SLOPE/src/Makevars | 2 SLOPE-1.1.0/SLOPE/src/slope/clusters.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/cv.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/folds.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/kkt_check.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/kkt_check.h | 6 SLOPE-1.1.0/SLOPE/src/slope/logger.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/losses/logistic.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/losses/loss.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/losses/multinomial.cpp | 8 SLOPE-1.1.0/SLOPE/src/slope/losses/poisson.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/losses/quadratic.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/losses/setup_loss.cpp | 10 - SLOPE-1.1.0/SLOPE/src/slope/math.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/normalize.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/qnorm.cpp | 1 SLOPE-1.1.0/SLOPE/src/slope/qnorm.h | 13 - SLOPE-1.1.0/SLOPE/src/slope/regularization_sequence.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/score.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/screening.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/slope.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/solvers/hybrid.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/solvers/hybrid_cd.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/solvers/pgd.cpp | 6 SLOPE-1.1.0/SLOPE/src/slope/solvers/setup_solver.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/solvers/slope_threshold.cpp | 4 SLOPE-1.1.0/SLOPE/src/slope/sorted_l1_norm.cpp | 8 SLOPE-1.1.0/SLOPE/src/slope/timer.cpp | 2 SLOPE-1.1.0/SLOPE/src/slope/utils.cpp | 2 SLOPE-1.1.0/SLOPE/tests/testthat/test-binomial.R | 22 ++ 76 files changed, 231 insertions(+), 176 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards, Poisson, and Fine-Gray competing risks regression are supported. This work was sponsored by NASA Grants 80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb] ,
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb] ,
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.3.0 dated 2025-06-05 and 1.4.3 dated 2025-10-30
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Colossus-1.4.3/Colossus/src/Omnibus_Pieces.h | 48 Colossus-1.4.3/Colossus/src/Plot_Extensions.cpp | 377 Colossus-1.4.3/Colossus/src/Plot_Extensions.h | 34 Colossus-1.4.3/Colossus/src/R_Interface.cpp | 666 Colossus-1.4.3/Colossus/src/R_Interface.h | 55 Colossus-1.4.3/Colossus/src/RcppExports.cpp | 2731 ---- Colossus-1.4.3/Colossus/src/Step_Calc.cpp | 867 - Colossus-1.4.3/Colossus/src/Step_Calc.h | 37 Colossus-1.4.3/Colossus/src/Step_Grad.cpp |only Colossus-1.4.3/Colossus/src/Step_Grad.h |only Colossus-1.4.3/Colossus/src/Step_Newton.cpp |only Colossus-1.4.3/Colossus/src/Step_Newton.h |only Colossus-1.4.3/Colossus/src/Subterms_Risk.cpp | 448 Colossus-1.4.3/Colossus/src/Subterms_Risk.h | 31 Colossus-1.4.3/Colossus/tests/testthat/sholom.csv |only Colossus-1.4.3/Colossus/tests/testthat/test-Assigned.R | 331 Colossus-1.4.3/Colossus/tests/testthat/test-CaseControl.R | 452 Colossus-1.4.3/Colossus/tests/testthat/test-Cox_Plot.R | 197 Colossus-1.4.3/Colossus/tests/testthat/test-Cox_Regression.R | 211 Colossus-1.4.3/Colossus/tests/testthat/test-Formula.R |only Colossus-1.4.3/Colossus/tests/testthat/test-Gradient.R | 140 Colossus-1.4.3/Colossus/tests/testthat/test-Joint.R | 290 Colossus-1.4.3/Colossus/tests/testthat/test-Logbound.R | 311 Colossus-1.4.3/Colossus/tests/testthat/test-Logit.R |only Colossus-1.4.3/Colossus/tests/testthat/test-Multidose.R | 351 Colossus-1.4.3/Colossus/tests/testthat/test-Norm.R |only Colossus-1.4.3/Colossus/tests/testthat/test-Omnibus.R | 385 Colossus-1.4.3/Colossus/tests/testthat/test-Poisson_Regression.R | 23 Colossus-1.4.3/Colossus/tests/testthat/test-Poisson_Residual.R | 49 Colossus-1.4.3/Colossus/tests/testthat/test-Utility.R | 1376 -- Colossus-1.4.3/Colossus/vignettes/Alt_Run_Opt.Rmd | 122 Colossus-1.4.3/Colossus/vignettes/Control_Options.Rmd | 72 Colossus-1.4.3/Colossus/vignettes/Dose_Formula_Inputs.Rmd | 16 Colossus-1.4.3/Colossus/vignettes/Equation_Expression.Rmd | 61 Colossus-1.4.3/Colossus/vignettes/Excess_and_Predicted_Cases.Rmd | 18 Colossus-1.4.3/Colossus/vignettes/Grad_Hess.Rmd | 14 Colossus-1.4.3/Colossus/vignettes/Logistic.Rmd |only Colossus-1.4.3/Colossus/vignettes/Matched_Case_Control.Rmd | 63 Colossus-1.4.3/Colossus/vignettes/Multi_Realization.Rmd | 19 Colossus-1.4.3/Colossus/vignettes/Plotting_And_Analysis.Rmd | 46 Colossus-1.4.3/Colossus/vignettes/SMR_Analysis.Rmd | 31 Colossus-1.4.3/Colossus/vignettes/Script_Comparison_Epicure.Rmd | 51 Colossus-1.4.3/Colossus/vignettes/Starting-Description.Rmd | 54 Colossus-1.4.3/Colossus/vignettes/Time_Dep_Cov.Rmd | 5 Colossus-1.4.3/Colossus/vignettes/Wald_and_Log_Bound.Rmd | 152 214 files changed, 11255 insertions(+), 22249 deletions(-)
Title: Bayesian Model Selection Approach for Parsimonious Gaussian
Mixture Models
Description: Model-based clustering using Bayesian parsimonious Gaussian mixture models.
MCMC (Markov chain Monte Carlo) are used for parameter estimation. The RJMCMC (Reversible-jump Markov chain Monte Carlo) is used for model selection.
GREEN et al. (1995) <doi:10.1093/biomet/82.4.711>.
Author: Yaoxiang Li [aut, cre],
Xiang Lu [aut],
Tanzy Love [aut]
Maintainer: Yaoxiang Li <yl814@georgetown.edu>
Diff between bpgmm versions 1.0.9 dated 2022-06-01 and 1.1.1 dated 2025-10-30
bpgmm-1.0.9/bpgmm/man/EvaluateProposalPsy.Rd |only bpgmm-1.0.9/bpgmm/man/MstepRJMCMCupdate.Rd |only bpgmm-1.0.9/bpgmm/man/VstepRJMCMCupdate.Rd |only bpgmm-1.0.9/bpgmm/man/calculateRatio.Rd |only bpgmm-1.0.9/bpgmm/man/calculateVarList.Rd |only bpgmm-1.0.9/bpgmm/man/changeConstraintFormat.Rd |only bpgmm-1.0.9/bpgmm/man/clearCurrentThetaYlist.Rd |only bpgmm-1.0.9/bpgmm/man/combineClusterPara.Rd |only bpgmm-1.0.9/bpgmm/man/evaluatePrior.Rd |only bpgmm-1.0.9/bpgmm/man/evaluatePriorLambda.Rd |only bpgmm-1.0.9/bpgmm/man/evaluatePriorPsi.Rd |only bpgmm-1.0.9/bpgmm/man/getIndThetaY.Rd |only bpgmm-1.0.9/bpgmm/man/getRemovedIndThetaY.Rd |only bpgmm-1.0.9/bpgmm/man/getThetaYWithEmpty.Rd |only bpgmm-1.0.9/bpgmm/man/getZmat.Rd |only bpgmm-1.0.9/bpgmm/man/getmode.Rd |only bpgmm-1.0.9/bpgmm/man/likelihood.Rd |only bpgmm-1.0.9/bpgmm/man/listToStrVec.Rd |only bpgmm-1.0.9/bpgmm/man/sumerizeZ.Rd |only bpgmm-1.0.9/bpgmm/man/toNEthetaYlist.Rd |only bpgmm-1.0.9/bpgmm/man/updatePostThetaY.Rd |only bpgmm-1.0.9/bpgmm/man/updatePostZ.Rd |only bpgmm-1.1.1/bpgmm/DESCRIPTION | 21 bpgmm-1.1.1/bpgmm/MD5 | 87 - bpgmm-1.1.1/bpgmm/NAMESPACE | 14 bpgmm-1.1.1/bpgmm/R/PGMMmain.R | 316 ++---- bpgmm-1.1.1/bpgmm/R/RcppExports.R | 62 - bpgmm-1.1.1/bpgmm/R/bpgmm-package.R | 6 bpgmm-1.1.1/bpgmm/R/hyperParamClass.R | 78 - bpgmm-1.1.1/bpgmm/R/paramClass.R | 166 +-- bpgmm-1.1.1/bpgmm/R/pgmmMstep.R | 788 +++++++--------- bpgmm-1.1.1/bpgmm/R/pgmmStay.R | 529 ++--------- bpgmm-1.1.1/bpgmm/R/pgmmVstep.R | 423 +++----- bpgmm-1.1.1/bpgmm/R/pkgData.R | 82 - bpgmm-1.1.1/bpgmm/R/posteriorZ.R | 157 --- bpgmm-1.1.1/bpgmm/R/prior.R | 872 +++++++----------- bpgmm-1.1.1/bpgmm/R/proposalLambda.R | 953 +++++++------------- bpgmm-1.1.1/bpgmm/R/proposalPsi.R | 1083 ++++++++--------------- bpgmm-1.1.1/bpgmm/R/sourceR.R | 88 - bpgmm-1.1.1/bpgmm/R/summerizeRes.R | 93 - bpgmm-1.1.1/bpgmm/R/updatePostThetaY.R | 225 +--- bpgmm-1.1.1/bpgmm/R/utils.R | 869 +++--------------- bpgmm-1.1.1/bpgmm/R/zzz.R | 14 bpgmm-1.1.1/bpgmm/man/CalculateProposalLambda.Rd | 143 --- bpgmm-1.1.1/bpgmm/man/CalculateProposalPsy.Rd | 140 -- bpgmm-1.1.1/bpgmm/man/EvaluateProposalLambda.Rd | 151 --- bpgmm-1.1.1/bpgmm/man/Hparam-class.Rd | 3 bpgmm-1.1.1/bpgmm/man/generatePriorLambda.Rd | 27 bpgmm-1.1.1/bpgmm/man/generatePriorPsi.Rd | 17 bpgmm-1.1.1/bpgmm/man/generatePriorThetaY.Rd | 22 bpgmm-1.1.1/bpgmm/man/pgmmRJMCMC.Rd | 55 - bpgmm-1.1.1/bpgmm/man/stayMCMCupdate.Rd | 92 - bpgmm-1.1.1/bpgmm/man/summerizePgmmRJMCMC.Rd | 36 bpgmm-1.1.1/bpgmm/man/toEthetaYlist.Rd | 75 - bpgmm-1.1.1/bpgmm/src/Makevars | 16 bpgmm-1.1.1/bpgmm/src/Makevars.win |only 56 files changed, 2469 insertions(+), 5234 deletions(-)
Title: Meteorological Data Processing
Description: Set of tools aimed at processing meteorological data, converting hourly recorded data to daily, monthly and annual data.
Author: Wagner Martins dos Santos [aut, cre] ,
Hoi Leong Lee [aut],
Edimir Xavier Leal Ferraz [aut] ,
Abelardo Antonio de Assuncao Montenegro [aut],
Lady Daiane Costa de Sousa Martins [aut] ,
Alan Cezar Bezerra [aut],
Ênio Farias de Franca e Silva [aut],
Thi [...truncated...]
Maintainer: Wagner Martins dos Santos <wagnnerms97@gmail.com>
Diff between DataMetProcess versions 1.0.6 dated 2025-08-23 and 1.0.7 dated 2025-10-30
DESCRIPTION | 10 ++--- MD5 | 8 ++-- R/adjustDate.R | 58 ++++++++++++++++------------------ build/vignette.rds |binary inst/doc/DataMetProcess-vignette.html | 7 ++-- 5 files changed, 41 insertions(+), 42 deletions(-)
More information about DataMetProcess at CRAN
Permanent link
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Toph Allen [aut, cre],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Toph Allen <toph@posit.co>
Diff between connectapi versions 0.8.0 dated 2025-07-30 and 0.9.0 dated 2025-10-30
connectapi-0.8.0/connectapi/R/utils-ci.R |only connectapi-0.8.0/connectapi/inst/ci |only connectapi-0.8.0/connectapi/man/as.data.frame.connect_list_integrations.Rd |only connectapi-0.8.0/connectapi/man/as_tibble.connect_list_integrations.Rd |only connectapi-0.8.0/connectapi/tests/integrated/test-ldap.R |only connectapi-0.9.0/connectapi/DESCRIPTION | 10 connectapi-0.9.0/connectapi/MD5 | 182 +-- connectapi-0.9.0/connectapi/NAMESPACE | 19 connectapi-0.9.0/connectapi/NEWS.md | 17 connectapi-0.9.0/connectapi/R/connect.R | 14 connectapi-0.9.0/connectapi/R/content.R | 388 +++++-- connectapi-0.9.0/connectapi/R/deploy.R | 26 connectapi-0.9.0/connectapi/R/git.R | 35 connectapi-0.9.0/connectapi/R/integrations.R | 533 +++++++++- connectapi-0.9.0/connectapi/R/page.R | 6 connectapi-0.9.0/connectapi/R/promote.R | 2 connectapi-0.9.0/connectapi/R/schedule.R | 20 connectapi-0.9.0/connectapi/R/tags.R | 4 connectapi-0.9.0/connectapi/R/variant.R | 63 - connectapi-0.9.0/connectapi/README.md | 4 connectapi-0.9.0/connectapi/build/vignette.rds |binary connectapi-0.9.0/connectapi/inst/doc/customize-http.html | 4 connectapi-0.9.0/connectapi/inst/doc/getting-started.html | 4 connectapi-0.9.0/connectapi/man/Content.Rd | 71 - connectapi-0.9.0/connectapi/man/ContentTask.Rd | 4 connectapi-0.9.0/connectapi/man/EnvironmentR6.Rd | 4 connectapi-0.9.0/connectapi/man/PositConnect.Rd | 11 connectapi-0.9.0/connectapi/man/Task.Rd | 11 connectapi-0.9.0/connectapi/man/Vanity.Rd | 4 connectapi-0.9.0/connectapi/man/VariantR6.Rd | 18 connectapi-0.9.0/connectapi/man/VariantSchedule.Rd | 5 connectapi-0.9.0/connectapi/man/VariantTask.Rd | 5 connectapi-0.9.0/connectapi/man/as.data.frame.connect_content_list.Rd |only connectapi-0.9.0/connectapi/man/as.data.frame.connect_integration_list.Rd |only connectapi-0.9.0/connectapi/man/as_integration.Rd |only connectapi-0.9.0/connectapi/man/as_tibble.connect_content_list.Rd |only connectapi-0.9.0/connectapi/man/as_tibble.connect_integration_list.Rd |only connectapi-0.9.0/connectapi/man/bundle_dir.Rd | 2 connectapi-0.9.0/connectapi/man/bundle_path.Rd | 2 connectapi-0.9.0/connectapi/man/bundle_static.Rd | 2 connectapi-0.9.0/connectapi/man/connect.Rd | 2 connectapi-0.9.0/connectapi/man/content_delete.Rd | 4 connectapi-0.9.0/connectapi/man/content_item.Rd | 4 connectapi-0.9.0/connectapi/man/content_title.Rd | 4 connectapi-0.9.0/connectapi/man/content_update.Rd | 4 connectapi-0.9.0/connectapi/man/create_integration.Rd |only connectapi-0.9.0/connectapi/man/create_random_name.Rd | 4 connectapi-0.9.0/connectapi/man/dashboard_url.Rd | 4 connectapi-0.9.0/connectapi/man/delete_integration.Rd |only connectapi-0.9.0/connectapi/man/delete_thumbnail.Rd | 4 connectapi-0.9.0/connectapi/man/delete_vanity_url.Rd | 4 connectapi-0.9.0/connectapi/man/deploy.Rd | 2 connectapi-0.9.0/connectapi/man/deploy_repo.Rd | 4 connectapi-0.9.0/connectapi/man/environment.Rd | 4 connectapi-0.9.0/connectapi/man/get_associations.Rd |only connectapi-0.9.0/connectapi/man/get_bundles.Rd | 8 connectapi-0.9.0/connectapi/man/get_image.Rd | 4 connectapi-0.9.0/connectapi/man/get_integration.Rd |only connectapi-0.9.0/connectapi/man/get_integrations.Rd | 84 - connectapi-0.9.0/connectapi/man/get_job.Rd | 4 connectapi-0.9.0/connectapi/man/get_jobs.Rd | 4 connectapi-0.9.0/connectapi/man/get_log.Rd | 4 connectapi-0.9.0/connectapi/man/get_thumbnail.Rd | 4 connectapi-0.9.0/connectapi/man/get_vanity_url.Rd | 4 connectapi-0.9.0/connectapi/man/git.Rd | 4 connectapi-0.9.0/connectapi/man/has_thumbnail.Rd | 4 connectapi-0.9.0/connectapi/man/lock_content.Rd |only connectapi-0.9.0/connectapi/man/permissions.Rd | 4 connectapi-0.9.0/connectapi/man/search_content.Rd |only connectapi-0.9.0/connectapi/man/set_image.Rd | 4 connectapi-0.9.0/connectapi/man/set_integrations.Rd |only connectapi-0.9.0/connectapi/man/set_run_as.Rd | 4 connectapi-0.9.0/connectapi/man/set_thumbnail.Rd | 4 connectapi-0.9.0/connectapi/man/set_vanity_url.Rd | 4 connectapi-0.9.0/connectapi/man/swap_vanity_url.Rd | 4 connectapi-0.9.0/connectapi/man/swap_vanity_urls.Rd | 4 connectapi-0.9.0/connectapi/man/terminate_jobs.Rd | 4 connectapi-0.9.0/connectapi/man/update_integration.Rd |only connectapi-0.9.0/connectapi/man/verify_content_name.Rd | 4 connectapi-0.9.0/connectapi/tests/integrated/helper.R | 4 connectapi-0.9.0/connectapi/tests/integrated/test-content.R | 50 connectapi-0.9.0/connectapi/tests/integrated/test-deploy.R | 20 connectapi-0.9.0/connectapi/tests/integrated/test-get.R | 4 connectapi-0.9.0/connectapi/tests/integrated/test-git.R | 12 connectapi-0.9.0/connectapi/tests/integrated/test-run-as.R | 8 connectapi-0.9.0/connectapi/tests/testthat.R | 16 connectapi-0.9.0/connectapi/tests/testthat/2024.08.0/__api__/v1/content/c3426b0b/README.md | 4 connectapi-0.9.0/connectapi/tests/testthat/2024.08.0/__api__/v1/content/c3426b0b/repository.R |only connectapi-0.9.0/connectapi/tests/testthat/2024.08.0/__api__/v1/content/f2f37341/repository.json |only connectapi-0.9.0/connectapi/tests/testthat/2024.12.0/__api__/v1/content |only connectapi-0.9.0/connectapi/tests/testthat/2024.12.0/__api__/v1/oauth/integrations |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/content |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations-7ae937-POST.R |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations-aef9b2-POST.json |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations.json |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations/0000001.json |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations/0000002.json |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations/60586f1c-DELETE.204 |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations/60586f1c-b90ada-PATCH.R |only connectapi-0.9.0/connectapi/tests/testthat/2025.07.0/__api__/v1/oauth/integrations/60586f1c-c0720f-PATCH.json |only connectapi-0.9.0/connectapi/tests/testthat/2025.09.0 |only connectapi-0.9.0/connectapi/tests/testthat/test-content.R | 196 +++ connectapi-0.9.0/connectapi/tests/testthat/test-git.R | 35 connectapi-0.9.0/connectapi/tests/testthat/test-integrations.R | 245 ++++ connectapi-0.9.0/connectapi/tests/testthat/test-page.R |only 105 files changed, 1759 insertions(+), 509 deletions(-)
Title: Bayesian Cost Effectiveness Analysis
Description: Produces an economic evaluation of a sample of suitable variables of
cost and effectiveness / utility for two or more interventions,
e.g. from a Bayesian model in the form of MCMC simulations.
This package computes the most cost-effective alternative and
produces graphical summaries and probabilistic sensitivity analysis,
see Baio et al (2017) <doi:10.1007/978-3-319-55718-2>.
Author: Gianluca Baio [aut, cre, cph] ,
Andrea Berardi [aut] ,
Anna Heath [aut] ,
Nathan Green [aut]
Maintainer: Gianluca Baio <g.baio@ucl.ac.uk>
Diff between BCEA versions 2.4.81 dated 2025-07-14 and 2.4.82 dated 2025-10-30
BCEA-2.4.81/BCEA/R/make.report.R |only BCEA-2.4.81/BCEA/inst/jags |only BCEA-2.4.81/BCEA/inst/rmarkdown |only BCEA-2.4.81/BCEA/man/make.report.Rd |only BCEA-2.4.81/BCEA/man/openPDF.Rd |only BCEA-2.4.82/BCEA/DESCRIPTION | 25 +- BCEA-2.4.82/BCEA/MD5 | 84 +++---- BCEA-2.4.82/BCEA/NAMESPACE | 13 - BCEA-2.4.82/BCEA/NEWS.md | 38 +++ BCEA-2.4.82/BCEA/R/BCEA-deprecated.R | 9 BCEA-2.4.82/BCEA/R/CEriskav.R | 3 BCEA-2.4.82/BCEA/R/CEriskav_plot_graph.R | 155 ++++++++------ BCEA-2.4.82/BCEA/R/CreateInputs.R | 14 + BCEA-2.4.82/BCEA/R/bcea.R | 12 - BCEA-2.4.82/BCEA/R/bcea.default.R | 92 +++++--- BCEA-2.4.82/BCEA/R/ceac.plot.R | 14 - BCEA-2.4.82/BCEA/R/ceac_plot_graph.R | 2 BCEA-2.4.82/BCEA/R/ceplane_plot_graph.R | 301 ++++++++++++++-------------- BCEA-2.4.82/BCEA/R/compute_xxx.R | 1 BCEA-2.4.82/BCEA/R/contour.R | 6 BCEA-2.4.82/BCEA/R/contour_graph.R | 2 BCEA-2.4.82/BCEA/R/evppi.R | 4 BCEA-2.4.82/BCEA/R/evppi_plot_ggplot.R | 37 ++- BCEA-2.4.82/BCEA/R/info.rank.R | 1 BCEA-2.4.82/BCEA/R/info_rank_graph.R | 9 BCEA-2.4.82/BCEA/R/line_labels.R | 2 BCEA-2.4.82/BCEA/R/misc_helpers.R | 10 BCEA-2.4.82/BCEA/R/new_bcea.R | 143 +++++++------ BCEA-2.4.82/BCEA/R/prep_delta_ce.R | 45 ++-- BCEA-2.4.82/BCEA/R/struct.psa.R | 3 BCEA-2.4.82/BCEA/R/zzz.R | 2 BCEA-2.4.82/BCEA/build/partial.rdb |binary BCEA-2.4.82/BCEA/man/BCEA-deprecated.Rd | 9 BCEA-2.4.82/BCEA/man/CEriskav_assign.Rd | 3 BCEA-2.4.82/BCEA/man/bcea.Rd | 22 -- BCEA-2.4.82/BCEA/man/ceac.plot.Rd | 14 - BCEA-2.4.82/BCEA/man/contour.Rd | 6 BCEA-2.4.82/BCEA/man/createInputs.Rd | 14 + BCEA-2.4.82/BCEA/man/evppi.Rd | 8 BCEA-2.4.82/BCEA/man/quiet.Rd | 2 BCEA-2.4.82/BCEA/tests/testthat/test-bcea.R | 30 +- 41 files changed, 637 insertions(+), 498 deletions(-)
Title: Deep Neural Networks for Survival Analysis Using 'torch'
Description: Provides deep learning models for right-censored survival data using the 'torch' backend.
Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox,
and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation,
hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score,
and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.
Author: Imad EL BADISY [aut, cre]
Maintainer: Imad EL BADISY <elbadisyimad@gmail.com>
Diff between survdnn versions 0.6.0 dated 2025-07-22 and 0.6.3 dated 2025-10-30
DESCRIPTION | 8 +++--- MD5 | 54 ++++++++++++++++++++--------------------- NEWS.md | 53 ++++++++++++++++++++++++++++++++++------ R/evaluation.R | 6 ++++ R/gridsearch_survdnn.R | 5 --- R/losses.R | 1 R/metrics.R | 6 ++++ R/plot.survdnn.R | 2 + R/predict.survdnn.R | 2 + R/print.survdnn.R | 2 + R/summary.survdnn.R | 2 + R/survdnn.R | 4 +++ R/zzz.R | 25 ++++++++----------- README.md | 56 +++++++++++++++++++++++++++---------------- man/brier.Rd | 2 + man/build_dnn.Rd | 2 + man/cindex_survmat.Rd | 2 + man/cv_survdnn.Rd | 2 + man/evaluate_survdnn.Rd | 2 + man/gridsearch_survdnn.Rd | 5 --- man/ibs_survmat.Rd | 2 + man/plot.survdnn.Rd | 2 + man/predict.survdnn.Rd | 2 + man/print.survdnn.Rd | 2 + man/summarize_cv_survdnn.Rd | 2 + man/summary.survdnn.Rd | 2 + man/survdnn.Rd | 2 + tests/testthat/test-losses.R | 12 ++++++--- 28 files changed, 180 insertions(+), 87 deletions(-)
Title: Policy Learning
Description: Package for learning and evaluating (subgroup) policies via doubly robust loss functions. Policy learning methods include doubly robust blip/conditional average treatment effect learning and sequential policy tree learning. Methods for (subgroup) policy evaluation include doubly robust cross-fitting and online estimation/sequential validation. See Nordland and Holst (2022) <doi:10.48550/arXiv.2212.02335> for documentation and references.
Author: Andreas Nordland [aut, cre],
Klaus Holst [aut]
Maintainer: Andreas Nordland <andreasnordland@gmail.com>
Diff between polle versions 1.5 dated 2024-09-06 and 1.6.0 dated 2025-10-30
polle-1.5/polle/tests/testthat/test-policy_data_functions.R |only polle-1.5/polle/tests/testthat/test-policy_eval_subgroup.R |only polle-1.5/polle/tests/testthat/test-policy_learn_blip.R |only polle-1.5/polle/tests/testthat/test-policy_learn_drql.R |only polle-1.5/polle/tests/testthat/test-policy_learn_earl.R |only polle-1.5/polle/tests/testthat/test-policy_learn_owl.R |only polle-1.5/polle/tests/testthat/test-policy_learn_ptl.R |only polle-1.5/polle/tests/testthat/test-policy_learn_ql.R |only polle-1.5/polle/tests/testthat/test-policy_learn_rwl.R |only polle-1.6.0/polle/DESCRIPTION | 22 polle-1.6.0/polle/MD5 | 158 +- polle-1.6.0/polle/NAMESPACE | 16 polle-1.6.0/polle/NEWS.md | 9 polle-1.6.0/polle/R/Q_function.R | 93 - polle-1.6.0/polle/R/blip.R | 296 +++- polle-1.6.0/polle/R/c_function.R |only polle-1.6.0/polle/R/c_models.R |only polle-1.6.0/polle/R/drql.R | 17 polle-1.6.0/polle/R/earl.R | 3 polle-1.6.0/polle/R/estimate_target.R | 525 ++++++-- polle-1.6.0/polle/R/fit_functions.R | 123 + polle-1.6.0/polle/R/g_function.R | 104 - polle-1.6.0/polle/R/g_models.R | 202 +-- polle-1.6.0/polle/R/helper_functions.R | 62 polle-1.6.0/polle/R/history_functions.R | 26 polle-1.6.0/polle/R/m_function.R |only polle-1.6.0/polle/R/model_designs.R |only polle-1.6.0/polle/R/nuisance_functions.R | 16 polle-1.6.0/polle/R/owl.R | 10 polle-1.6.0/polle/R/policy_data.R | 482 ++++--- polle-1.6.0/polle/R/policy_data_functions.R | 339 +++-- polle-1.6.0/polle/R/policy_def.R | 50 polle-1.6.0/polle/R/policy_eval.R | 585 ++++++-- polle-1.6.0/polle/R/policy_eval_functions.R | 35 polle-1.6.0/polle/R/policy_eval_online.R |only polle-1.6.0/polle/R/policy_learn.R | 15 polle-1.6.0/polle/R/polle-package.R | 4 polle-1.6.0/polle/R/ptl.R | 14 polle-1.6.0/polle/R/q_models.R | 64 polle-1.6.0/polle/R/rql.R | 3 polle-1.6.0/polle/R/rwl.R | 3 polle-1.6.0/polle/R/simulation.R | 9 polle-1.6.0/polle/build/partial.rdb |binary polle-1.6.0/polle/build/vignette.rds |binary polle-1.6.0/polle/inst/doc/optimal_subgroup.html | 39 polle-1.6.0/polle/inst/doc/policy_data.R | 1 polle-1.6.0/polle/inst/doc/policy_data.Rmd | 1 polle-1.6.0/polle/inst/doc/policy_data.html | 480 +++---- polle-1.6.0/polle/inst/doc/policy_eval.R | 22 polle-1.6.0/polle/inst/doc/policy_eval.html | 86 - polle-1.6.0/polle/inst/doc/policy_learn.html | 249 +-- polle-1.6.0/polle/inst/doc/right_censoring.R |only polle-1.6.0/polle/inst/doc/right_censoring.Rmd |only polle-1.6.0/polle/inst/doc/right_censoring.html |only polle-1.6.0/polle/man/c_model.Rd |only polle-1.6.0/polle/man/control_blip.Rd | 5 polle-1.6.0/polle/man/figures |only polle-1.6.0/polle/man/fit_c_functions.Rd |only polle-1.6.0/polle/man/g_model.Rd | 2 polle-1.6.0/polle/man/get_event.Rd |only polle-1.6.0/polle/man/get_history.Rd | 4 polle-1.6.0/polle/man/get_id_stage.Rd | 6 polle-1.6.0/polle/man/plot.policy_data.Rd | 5 polle-1.6.0/polle/man/policy_data.Rd | 6 polle-1.6.0/polle/man/policy_eval.Rd | 37 polle-1.6.0/polle/man/policy_eval_online.Rd |only polle-1.6.0/polle/man/policy_learn.Rd | 8 polle-1.6.0/polle/man/polle-package.Rd | 2 polle-1.6.0/polle/man/predict.nuisance_functions.Rd | 8 polle-1.6.0/polle/man/q_model.Rd | 2 polle-1.6.0/polle/man/sim_two_stage.Rd | 2 polle-1.6.0/polle/tests/test-all.R | 2 polle-1.6.0/polle/tests/testthat/test-c_cox.R |only polle-1.6.0/polle/tests/testthat/test-fit_c_functions.R |only polle-1.6.0/polle/tests/testthat/test-fit_functions.R | 159 ++ polle-1.6.0/polle/tests/testthat/test-fit_m_function.R |only polle-1.6.0/polle/tests/testthat/test-g_models.R | 141 +- polle-1.6.0/polle/tests/testthat/test-model_designs.R |only polle-1.6.0/polle/tests/testthat/test-policy_data-functions.R |only polle-1.6.0/polle/tests/testthat/test-policy_data-right-censoring.R |only polle-1.6.0/polle/tests/testthat/test-policy_data.R | 281 ++-- polle-1.6.0/polle/tests/testthat/test-policy_def.R | 10 polle-1.6.0/polle/tests/testthat/test-policy_eval-censoring.R |only polle-1.6.0/polle/tests/testthat/test-policy_eval-subgroup.R |only polle-1.6.0/polle/tests/testthat/test-policy_eval.R | 655 +++++++++- polle-1.6.0/polle/tests/testthat/test-policy_eval_online.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-blip-censoring.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-blip.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-drql.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-earl.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-owl.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-ptl.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-ql.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn-rwl.R |only polle-1.6.0/polle/tests/testthat/test-policy_learn.R | 121 + polle-1.6.0/polle/tests/testthat/test-q_glmnet.R | 70 + polle-1.6.0/polle/tests/testthat/test-q_models.R | 56 polle-1.6.0/polle/vignettes/policy_data.Rmd | 1 polle-1.6.0/polle/vignettes/ref.bib | 15 polle-1.6.0/polle/vignettes/right_censoring.Rmd |only 100 files changed, 4056 insertions(+), 1705 deletions(-)
Title: Higher Level 'API' for 'torch'
Description: A high level interface for 'torch' providing utilities to reduce the
the amount of code needed for common tasks, abstract away torch details and
make the same code work on both the 'CPU' and 'GPU'. It's flexible enough to
support expressing a large range of models. It's heavily inspired by 'fastai' by
Howard et al. (2020) <doi:10.48550/arXiv.2002.04688>, 'Keras' by Chollet et al. (2015) and
'PyTorch Lightning' by Falcon et al. (2019) <doi:10.5281/zenodo.3828935>.
Author: Daniel Falbel [aut, cre, cph],
Christophe Regouby [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between luz versions 0.5.0 dated 2025-07-29 and 0.5.1 dated 2025-10-30
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 4 + R/module.R | 8 ++- inst/doc/get-started.R | 88 +++++++++++++++++++++---------------------- inst/doc/get-started.html | 40 +++++++++++-------- tests/testthat/test-module.R | 28 +++++++++++++ 7 files changed, 113 insertions(+), 73 deletions(-)
Title: Alternative and Fast ROC Analysis
Description: Alternative and fast algorithms for the analysis of receiver operating
characteristics curves (ROC curves) as described in Thomas et al. (2017)
<doi:10.1186/s41512-017-0017-y> and Thomas et al. (2023) <doi:10.1016/j.ajogmf.2023.101110>.
Author: Gregoire Thomas [aut, cre] ,
Robin Tuytten [ctb] ,
Jef Moerman [ctb],
Xavier Robin [cph] ,
Stefan Siegert [cph]
Maintainer: Gregoire Thomas <gregoire.thomas@SQU4RE.com>
Diff between alternativeROC versions 1.0.1 dated 2025-08-19 and 1.0.3 dated 2025-10-30
DESCRIPTION | 10 +-- MD5 | 14 ++--- NEWS | 11 ++++ R/rocperf.R | 96 ++++++++++++++++++++++++++--------- R/rocsesp.R | 7 +- man/rocperf.Rd | 19 +++++-- tests/testthat/test_rocperf.R | 110 ++++++++++++++++++++--------------------- tests/testthat/test_rocperfZ.R |only tests/testthat/test_rocsesp.R |only 9 files changed, 171 insertions(+), 96 deletions(-)
More information about alternativeROC at CRAN
Permanent link
Title: Procedures Related to the Zadeh's Extension Principle for Fuzzy
Data
Description: Procedures for calculation, plotting, animation, and approximation of the outputs for fuzzy numbers (see A.I. Ban, L. Coroianu, P. Grzegorzewski "Fuzzy Numbers: Approximations, Ranking and Applications" (2015)) based on the Zadeh's Extension Principle (see de Barros, L.C., Bassanezi, R.C., Lodwick, W.A. (2017) <doi:10.1007/978-3-662-53324-6_2>).
Author: Maciej Romaniuk [cre, aut] ),
Abbas Parchami [aut] ),
Przemyslaw Grzegorzewski [aut] )
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between ZEP versions 0.2.3 dated 2025-09-24 and 0.3.1 dated 2025-10-30
ZEP-0.2.3/ZEP/R/AnimateZFunction.R |only ZEP-0.2.3/ZEP/R/ApplyZFunction.R |only ZEP-0.2.3/ZEP/R/PlotZFunction.R |only ZEP-0.2.3/ZEP/man/AnimateZFunction.Rd |only ZEP-0.2.3/ZEP/man/ApplyZFunction.Rd |only ZEP-0.2.3/ZEP/man/PlotZFunction.Rd |only ZEP-0.2.3/ZEP/tests/testthat/_snaps/ApplyZFunction.md |only ZEP-0.2.3/ZEP/tests/testthat/test-AnimateZFunction.R |only ZEP-0.2.3/ZEP/tests/testthat/test-ApplyZFunction.R |only ZEP-0.2.3/ZEP/tests/testthat/test-PlotZFunction.R |only ZEP-0.3.1/ZEP/DESCRIPTION | 12 - ZEP-0.3.1/ZEP/MD5 | 36 +-- ZEP-0.3.1/ZEP/NAMESPACE | 6 ZEP-0.3.1/ZEP/R/AnimateListZEP.R |only ZEP-0.3.1/ZEP/R/AnimateZEP.R | 204 ++++-------------- ZEP-0.3.1/ZEP/R/ApplyZEP.R |only ZEP-0.3.1/ZEP/R/FuzzyApproximation.R | 4 ZEP-0.3.1/ZEP/R/PlotZEP.R |only ZEP-0.3.1/ZEP/R/approximationMehodsInside.R | 2 ZEP-0.3.1/ZEP/man/AnimateListZEP.Rd |only ZEP-0.3.1/ZEP/man/AnimateZEP.Rd | 54 ++-- ZEP-0.3.1/ZEP/man/ApplyZEP.Rd |only ZEP-0.3.1/ZEP/man/FuzzyApproximation.Rd | 2 ZEP-0.3.1/ZEP/man/PlotZEP.Rd |only ZEP-0.3.1/ZEP/tests/testthat/_snaps/ApplyZEP.md |only ZEP-0.3.1/ZEP/tests/testthat/test-AnimateListZEP.R |only ZEP-0.3.1/ZEP/tests/testthat/test-AnimateZEP.R | 18 - ZEP-0.3.1/ZEP/tests/testthat/test-ApplyZEP.R |only ZEP-0.3.1/ZEP/tests/testthat/test-PlotZEP.R |only 29 files changed, 120 insertions(+), 218 deletions(-)
Title: Analysis of Oceanographic Argo Floats
Description: Supports the analysis of oceanographic data recorded by Argo autonomous drifting profiling floats. Functions are provided to (a) download and cache data files, (b) subset data in various ways, (c) handle quality-control flags and (d) plot the results according to oceanographic conventions. A shiny app is provided for easy exploration of datasets. The package is designed to work well with the 'oce' package, providing a wide range of processing capabilities that are particular to oceanographic analysis. See Kelley, Harbin, and Richards (2021) <doi:10.3389/fmars.2021.635922> for more on the scientific context and applications.
Author: Dan Kelley [aut, cre, cph] ,
Jaimie Harbin [aut] ,
Dewey Dunnington [ctb] ,
Clark Richards [ctb]
Maintainer: Dan Kelley <dan.kelley@dal.ca>
Diff between argoFloats versions 1.0.7 dated 2023-10-17 and 1.0.9 dated 2025-10-30
DESCRIPTION | 19 MD5 | 100 - R/AllClass.R | 394 ++--- R/adjusted.R | 139 +- R/debug.R | 97 - R/defaults.R | 27 R/download.R | 65 R/extdata.R | 13 R/get.R | 473 +++--- R/mapApp.R | 51 R/merge.R | 132 + R/misc.R | 8 R/plot.R | 790 ++++++----- R/plot_TS.R | 203 +- R/qc.R | 128 - R/read.R | 214 +-- R/show.R | 61 R/subset.R | 956 +++++++------ R/summary.R | 51 README.md | 32 build/partial.rdb |binary build/vignette.rds |binary inst/doc/argoFloats.R | 134 - inst/doc/argoFloats.html | 15 inst/doc/qc.R | 158 +- inst/doc/qc.html | 17 inst/shiny/mapApp/app.R | 2131 ++++++++++++++++--------------- man/D4900785_048.nc.Rd | 2 man/R3901602_163.nc.Rd | 2 man/SD5903586_001.nc.Rd | 6 man/SR2902204_131.nc.Rd | 2 man/applyQC.Rd | 16 man/argoFloats.Rd | 2 man/argoFloatsDebug.Rd | 8 man/figures/README-unnamed-chunk-6-1.png |binary man/getIndex.Rd | 16 man/hexToBits.Rd | 4 man/index.Rd | 2 man/indexBgc.Rd | 6 man/indexDeep.Rd | 6 man/indexSynthetic.Rd | 6 man/merge-argoFloats-method.Rd | 6 man/plot-argoFloats-method.Rd | 76 - man/readProfiles.Rd | 24 man/showQCTests.Rd | 2 man/sub-sub-argoFloats-method.Rd | 8 man/subset-argoFloats-method.Rd | 180 ++ man/useAdjusted.Rd | 8 tests/testthat/test_download.R | 271 +-- tests/testthat/test_merge.R | 39 tests/testthat/test_subset.R | 269 ++- 51 files changed, 4074 insertions(+), 3295 deletions(-)
Title: Causal Inference with Super Learner and Deep Neural Networks
Description: Functions for deep learning estimation of Conditional Average Treatment Effects (CATEs)
from meta-learner models and Population Average Treatment Effects on the Treated (PATT) in settings with
treatment noncompliance using reticulate, TensorFlow and Keras3. Functions in the package also implements
the conformal prediction framework that enables computation and illustration of conformal prediction (CP)
intervals for estimated individual treatment effects (ITEs) from meta-learner models. Additional
functions in the package permit users to estimate the meta-learner CATEs and the PATT in settings with
treatment noncompliance using weighted ensemble learning via the super learner approach and R neural networks.
Author: Nguyen K. Huynh [aut, cre] ,
Bumba Mukherjee [aut] ,
Yang Yang [aut]
Maintainer: Nguyen K. Huynh <khoinguyen.huynh@r.hit-u.ac.jp>
Diff between DeepLearningCausal versions 0.0.106 dated 2025-06-11 and 0.0.107 dated 2025-10-30
DeepLearningCausal-0.0.106/DeepLearningCausal/R/global.R |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/metalearner_deepneural.Rd |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/pattc_deepneural.Rd |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/plot.metalearner_deepneural.Rd |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/plot.pattc_deepneural.Rd |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/print.metalearner_deepneural.Rd |only DeepLearningCausal-0.0.106/DeepLearningCausal/man/print.pattc_deepneural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/DESCRIPTION | 65 DeepLearningCausal-0.0.107/DeepLearningCausal/MD5 | 81 DeepLearningCausal-0.0.107/DeepLearningCausal/NAMESPACE | 27 DeepLearningCausal-0.0.107/DeepLearningCausal/R/deep_meta_learners.R |only DeepLearningCausal-0.0.107/DeepLearningCausal/R/meta_learners.R | 1271 ++++++---- DeepLearningCausal-0.0.107/DeepLearningCausal/R/neural_meta_learners.R | 126 DeepLearningCausal-0.0.107/DeepLearningCausal/R/patt_deep.R |only DeepLearningCausal-0.0.107/DeepLearningCausal/R/patt_ensemble.R | 62 DeepLearningCausal-0.0.107/DeepLearningCausal/R/patt_neural.R | 138 - DeepLearningCausal-0.0.107/DeepLearningCausal/R/plots.R | 457 ++- DeepLearningCausal-0.0.107/DeepLearningCausal/R/py_setup.R |only DeepLearningCausal-0.0.107/DeepLearningCausal/R/utils.R | 72 DeepLearningCausal-0.0.107/DeepLearningCausal/R/zzz.R |only DeepLearningCausal-0.0.107/DeepLearningCausal/data/exp_data.rda |binary DeepLearningCausal-0.0.107/DeepLearningCausal/data/exp_data_full.rda |binary DeepLearningCausal-0.0.107/DeepLearningCausal/data/pop_data.rda |binary DeepLearningCausal-0.0.107/DeepLearningCausal/data/pop_data_full.rda |binary DeepLearningCausal-0.0.107/DeepLearningCausal/man/build_model.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/check_cran_deps.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/check_python_modules.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/complier_mod.Rd | 69 DeepLearningCausal-0.0.107/DeepLearningCausal/man/conformal_plot.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/deep_complier_mod.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/deep_predict.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/deep_response_model.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/hte_plot.Rd | 19 DeepLearningCausal-0.0.107/DeepLearningCausal/man/metalearner_deeplearning.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/metalearner_ensemble.Rd | 59 DeepLearningCausal-0.0.107/DeepLearningCausal/man/metalearner_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/neuralnet_complier_mod.Rd | 3 DeepLearningCausal-0.0.107/DeepLearningCausal/man/neuralnet_pattc_counterfactuals.Rd | 4 DeepLearningCausal-0.0.107/DeepLearningCausal/man/neuralnet_response_model.Rd | 9 DeepLearningCausal-0.0.107/DeepLearningCausal/man/pattc_counterfactuals.Rd | 66 DeepLearningCausal-0.0.107/DeepLearningCausal/man/pattc_deeplearning.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/pattc_deeplearning_counterfactuals.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/pattc_ensemble.Rd | 197 - DeepLearningCausal-0.0.107/DeepLearningCausal/man/pattc_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/plot.metalearner_ensemble.Rd | 2 DeepLearningCausal-0.0.107/DeepLearningCausal/man/plot.metalearner_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/plot.pattc_deeplearning.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/plot.pattc_ensemble.Rd | 2 DeepLearningCausal-0.0.107/DeepLearningCausal/man/plot.pattc_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/popcall.Rd | 2 DeepLearningCausal-0.0.107/DeepLearningCausal/man/print.metalearner_deeplearning.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/print.metalearner_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/print.pattc_deeplearning.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/print.pattc_neural.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/python_ready.Rd |only DeepLearningCausal-0.0.107/DeepLearningCausal/man/response_model.Rd | 4 DeepLearningCausal-0.0.107/DeepLearningCausal/tests |only 57 files changed, 1749 insertions(+), 986 deletions(-)
More information about DeepLearningCausal at CRAN
Permanent link
Title: Optimal Categorisation of Continuous Variables in Prediction
Models
Description: Allows the user to categorise a continuous predictor variable in a logistic or a Cox proportional hazards regression setting, by maximising the discriminative ability of the model. I Barrio, I Arostegui, MX Rodriguez-Alvarez, JM Quintana (2015) <doi:10.1177/0962280215601873>. I Barrio, MX Rodriguez-Alvarez, L Meira-Machado, C Esteban, I Arostegui (2017) <https://www.idescat.cat/sort/sort411/41.1.3.barrio-etal.pdf>.
Author: Irantzu Barrio [aut, cre],
Maria Xose Rodriguez-Alvarez [aut],
Inmaculada Arostegui [ctb],
Diana Marcela Perez [ctb]
Maintainer: Irantzu Barrio <irantzu.barrio@ehu.eus>
Diff between CatPredi versions 1.3 dated 2022-01-10 and 1.4 dated 2025-10-30
DESCRIPTION | 17 ++- MD5 | 54 ++++++------ NAMESPACE | 6 + R/backaddfor.R |only R/backaddfor.cind.R |only R/calculate.CPE.R | 53 +++++------ R/catpredi.R | 40 ++++++-- R/catpredi.survival.R | 64 +++++++++++--- R/comp.cutpoints.survival.R | 173 +++++++++++++++++++------------------- R/compare.AUC.ht.R |only R/controlcatpredi.R | 15 +-- R/controlcatpredi.survival.R | 16 +-- R/cpe.opt.corrected.R | 78 ++++++++--------- R/k.points.max.cind.R | 49 +++++----- R/plot.catpredi.R | 44 +++++++-- R/plot.catpredi.survival.R | 22 ++-- R/print.catpredi.R | 107 ++++++++++++----------- R/print.catpredi.survival.R | 179 ++++++++++++++++++++-------------------- R/select.cutpoint.cpe.R | 60 ++++++------- man/CatPredi-package.Rd | 62 +++++++------ man/catpredi.Rd | 26 ++++- man/catpredi.survival.Rd | 169 ++++++++++++++++++------------------- man/comp.cutpoints.Rd | 148 ++++++++++++++++----------------- man/comp.cutpoints.survival.Rd | 146 ++++++++++++++++---------------- man/compare.AUC.ht.Rd |only man/controlcatpredi.Rd | 83 +++++++++--------- man/controlcatpredi.survival.Rd | 4 man/plot.catpredi.Rd | 12 +- man/plot.catpredi.survival.Rd | 112 ++++++++++++------------- man/summary.catpredi.Rd | 132 ++++++++++++++--------------- 30 files changed, 988 insertions(+), 883 deletions(-)
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.0.2 dated 2025-08-19 and 1.1.0 dated 2025-10-30
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Title: A Tidy Implementation of Heatmap
Description: This is a tidy implementation for heatmap. At the
moment it is based on the (great) package 'ComplexHeatmap'. The goal
of this package is to interface a tidy data frame with this powerful
tool. Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names). Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...). Labels size
adjusted by row and column total number. Default use of Brewer and
Viridis palettes.
Author: Stefano Mangiola [aut, cre],
Anthony Papenfuss [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyHeatmap versions 1.12.3 dated 2025-10-26 and 1.13.1 dated 2025-10-30
DESCRIPTION | 6 MD5 | 42 ++- R/classes.R | 6 R/functions.R | 19 + R/methods.R | 21 + R/tidyHeatmap-package.R |only build/stage23.rdb |binary inst/NEWS.rd | 18 - inst/doc/introduction.R | 101 ++++++++ inst/doc/introduction.Rmd | 111 +++++++++ inst/doc/introduction.html | 362 +++++++++++++++++++----------- man/layer_text-method.Rd | 6 man/tidyHeatmap-package.Rd |only tests/testthat/_snaps/color-functionality |only tests/testthat/test-color-functionality.R |only vignettes/introduction.Rmd | 111 +++++++++ 16 files changed, 641 insertions(+), 162 deletions(-)
Title: Targeted Inference
Description: Various methods for targeted and semiparametric inference including
augmented inverse probability weighted (AIPW) estimators for missing data and
causal inference (Bang and Robins (2005) <doi:10.1111/j.1541-0420.2005.00377.x>),
variable importance and conditional average treatment effects (CATE)
(van der Laan (2006) <doi:10.2202/1557-4679.1008>),
estimators for risk differences and relative risks (Richardson et al. (2017)
<doi:10.1080/01621459.2016.1192546>), assumption lean inference for generalized
linear model parameters (Vansteelandt et al. (2022) <doi:10.1111/rssb.12504>).
Author: Klaus K. Holst [aut, cre],
Benedikt Sommer [aut],
Andreas Nordland [aut]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between targeted versions 0.5 dated 2024-02-22 and 0.6 dated 2025-10-30
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targeted-0.6/targeted/R/softmax.R | 19 targeted-0.6/targeted/R/superlearner.R |only targeted-0.6/targeted/R/targeted-methods.R | 86 - targeted-0.6/targeted/R/targeted-package.R | 133 + targeted-0.6/targeted/R/test_intersection_sw.R |only targeted-0.6/targeted/R/truncatedscore.R |only targeted-0.6/targeted/R/utils.R | 85 - targeted-0.6/targeted/README.md | 399 +++-- targeted-0.6/targeted/build/partial.rdb |binary targeted-0.6/targeted/build/vignette.rds |binary targeted-0.6/targeted/data |only targeted-0.6/targeted/demo/targeted.R | 2 targeted-0.6/targeted/inst/README.Rmd |only targeted-0.6/targeted/inst/doc/predictionclass.R |only targeted-0.6/targeted/inst/doc/predictionclass.Rmd |only targeted-0.6/targeted/inst/doc/predictionclass.html |only targeted-0.6/targeted/inst/doc/riskregression.R | 14 targeted-0.6/targeted/inst/doc/riskregression.Rmd | 14 targeted-0.6/targeted/inst/doc/riskregression.html | 649 +------- targeted-0.6/targeted/inst/include/targeted_RcppExports.h | 42 targeted-0.6/targeted/inst/misc/dp.R | 2 targeted-0.6/targeted/inst/misc/logohex1.png |only targeted-0.6/targeted/inst/misc/multiclasspred.Rmd | 27 targeted-0.6/targeted/inst/misc/proto.R | 58 targeted-0.6/targeted/inst/slowtest |only targeted-0.6/targeted/inst/slowtest.R |only targeted-0.6/targeted/inst/tinytest |only targeted-0.6/targeted/man/ML.Rd | 18 targeted-0.6/targeted/man/RATE.Rd | 12 targeted-0.6/targeted/man/RATE.surv.Rd | 40 targeted-0.6/targeted/man/SL.Rd | 16 targeted-0.6/targeted/man/aipw.Rd | 20 targeted-0.6/targeted/man/alean.Rd | 31 targeted-0.6/targeted/man/ate.Rd | 55 targeted-0.6/targeted/man/calibration-class.Rd | 15 targeted-0.6/targeted/man/calibration.Rd | 14 targeted-0.6/targeted/man/cate.Rd | 134 + targeted-0.6/targeted/man/cate_link.Rd | 2 targeted-0.6/targeted/man/constructor_shared.Rd |only targeted-0.6/targeted/man/cross_validated-class.Rd | 2 targeted-0.6/targeted/man/crr.Rd | 12 targeted-0.6/targeted/man/cumhaz.Rd |only targeted-0.6/targeted/man/cv.default.Rd |only targeted-0.6/targeted/man/cv.learner_sl.Rd |only targeted-0.6/targeted/man/deprecate_arg_warn.Rd |only targeted-0.6/targeted/man/deprecated_argument_names.Rd |only targeted-0.6/targeted/man/design.Rd | 33 targeted-0.6/targeted/man/estimate_truncatedscore.Rd |only targeted-0.6/targeted/man/expand.list.Rd | 8 targeted-0.6/targeted/man/figures/README-lrplot-1.png |only targeted-0.6/targeted/man/figures/README-lrsl_plot-1.png |only targeted-0.6/targeted/man/figures/README-simplot-1.png |only targeted-0.6/targeted/man/figures/logo.png |only targeted-0.6/targeted/man/figures/logohex2.png |only targeted-0.6/targeted/man/figures/target.pdf |only targeted-0.6/targeted/man/figures/target.svg |only targeted-0.6/targeted/man/figures/targeted.svg |only targeted-0.6/targeted/man/int_surv.Rd |only targeted-0.6/targeted/man/learner.Rd |only targeted-0.6/targeted/man/learner_expand_grid.Rd |only targeted-0.6/targeted/man/learner_gam.Rd |only targeted-0.6/targeted/man/learner_glm.Rd |only targeted-0.6/targeted/man/learner_glmnet_cv.Rd |only targeted-0.6/targeted/man/learner_grf.Rd |only targeted-0.6/targeted/man/learner_hal.Rd |only targeted-0.6/targeted/man/learner_isoreg.Rd |only targeted-0.6/targeted/man/learner_mars.Rd |only targeted-0.6/targeted/man/learner_naivebayes.Rd |only targeted-0.6/targeted/man/learner_sl.Rd |only targeted-0.6/targeted/man/learner_stratify.Rd |only targeted-0.6/targeted/man/learner_svm.Rd |only targeted-0.6/targeted/man/learner_xgboost.Rd |only targeted-0.6/targeted/man/ml_model.Rd | 246 --- targeted-0.6/targeted/man/naivebayes-class.Rd |only targeted-0.6/targeted/man/naivebayes.Rd |only targeted-0.6/targeted/man/nondom.Rd | 6 targeted-0.6/targeted/man/predict.naivebayes.Rd |only targeted-0.6/targeted/man/predict.superlearner.Rd |only targeted-0.6/targeted/man/reexports.Rd |only targeted-0.6/targeted/man/riskreg.Rd | 78 - targeted-0.6/targeted/man/riskreg_cens.Rd | 13 targeted-0.6/targeted/man/score.superlearner.Rd |only targeted-0.6/targeted/man/scoring.Rd |only targeted-0.6/targeted/man/solve_ode.Rd | 3 targeted-0.6/targeted/man/specify_ode.Rd | 23 targeted-0.6/targeted/man/stratify.Rd |only targeted-0.6/targeted/man/superlearner.Rd |only targeted-0.6/targeted/man/targeted-class.Rd | 15 targeted-0.6/targeted/man/targeted-package.Rd | 21 targeted-0.6/targeted/man/terms.design.Rd |only targeted-0.6/targeted/man/test_intersection_sw.Rd |only targeted-0.6/targeted/man/truncatedscore.Rd |only targeted-0.6/targeted/man/weights.superlearner.Rd |only targeted-0.6/targeted/src/Makevars | 25 targeted-0.6/targeted/src/RcppExports.cpp | 79 + targeted-0.6/targeted/src/target |only targeted-0.6/targeted/src/utils_interface.cpp | 28 targeted-0.6/targeted/tests/tinytest.R |only targeted-0.6/targeted/vignettes/predictionclass.Rmd |only targeted-0.6/targeted/vignettes/riskregression.Rmd | 14 176 files changed, 4113 insertions(+), 3194 deletions(-)
Title: Econdataverse 'IMF Data API' Client
Description: Provides user-friendly functions for programmatic access to macroeconomic data from the International Monetary Fund's 'SDMX 3.0 IMF Data API' <https://data.imf.org/en/Resource-Pages/IMF-API>.
Author: Teal Insights [cre, cph],
Christopher C. Smith [aut],
Christoph Scheuch [ctb]
Maintainer: Teal Insights <lte@tealinsights.com>
Diff between imfapi versions 0.1.0 dated 2025-10-25 and 0.1.1 dated 2025-10-30
DESCRIPTION | 16 - MD5 | 14 - NEWS.md | 4 R/imf_get.R | 57 ++++- README.md | 16 - man/imf_get.Rd | 2 tests/testthat/test-imf_get.R | 387 +++++++++++++++++++++++++++++++++- tests/testthat/test-perform_request.R | 4 8 files changed, 475 insertions(+), 25 deletions(-)
Title: Data Analysis using Bootstrap-Coupled Estimation
Description: Data Analysis using Bootstrap-Coupled ESTimation. Estimation
statistics is a simple framework that avoids the pitfalls of
significance testing. It uses familiar statistical concepts: means,
mean differences, and error bars. More importantly, it focuses on the
effect size of one's experiment/intervention, as opposed to a false
dichotomy engendered by P values. An estimation plot has two key
features: 1. It presents all datapoints as a swarmplot, which orders
each point to display the underlying distribution. 2. It presents the
effect size as a bootstrap 95% confidence interval on a separate but
aligned axes. Estimation plots are introduced in Ho et al., Nature
Methods 2019, 1548-7105. <doi:10.1038/s41592-019-0470-3>. The
free-to-view PDF is located at
<https://www.nature.com/articles/s41592-019-0470-3.epdf?author_access_token=Euy6APITxsYA3huBKOFBvNRgN0jAjWel9jnR3ZoTv0Pr6zJiJ3AA5aH4989gOJS_dajtNr1Wt17D0fh-t4GFcvqwMYN03qb8C33na_UrCUcGrt-Z0J9aPL6TPSbOxIC-pbHWKUDo2XsUOr3hQmlR [...truncated...]
Author: Joses W. Ho [aut] ,
Kah Seng Lian [aut],
Ana Rosa Castillo [aut],
Zhuoyu Wang [aut],
Jun Yang Liao [aut],
Felicia Low [aut],
Tayfun Tumkaya [aut] ,
Jonathan Anns [ctb] ,
Yishan Mai [cre, ctb] ,
Sangyu Xu [ctb] ,
Zinan Lu [ctb],
Hyungwon Choi [ctb] ,
[...truncated...]
Maintainer: Yishan Mai <maiyishan@u.duke.nus.edu>
Diff between dabestr versions 2025.3.14 dated 2025-02-26 and 2025.3.15 dated 2025-10-30
DESCRIPTION | 29 MD5 | 59 - NEWS.md | 3 build/vignette.rds |binary inst/doc/plot_aesthetics.R | 32 inst/doc/plot_aesthetics.html | 19 inst/doc/sample_datasets.R | 18 inst/doc/sample_datasets.html | 1 inst/doc/tutorial_basics.R | 26 inst/doc/tutorial_basics.html | 395 ++++------ inst/doc/tutorial_deltadelta.R | 50 - inst/doc/tutorial_deltadelta.html | 171 +--- inst/doc/tutorial_minimeta.R | 18 inst/doc/tutorial_minimeta.Rmd | 2 inst/doc/tutorial_minimeta.html | 143 +-- inst/doc/tutorial_proportion_plots.R | 40 - inst/doc/tutorial_proportion_plots.html | 169 +--- inst/doc/tutorial_repeated_measures.R | 46 - inst/doc/tutorial_repeated_measures.html | 39 tests/testthat/_snaps/001_plotter/deltadelta-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/minimeta-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/multigroup-baseline-colour-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/multigroup-baseline-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/multigroup-sequential-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/multigroup-unpaired-mean-diff-colour.new.svg |only tests/testthat/_snaps/001_plotter/multigroup-unpaired-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/proportion-baseline-flow-false-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/proportion-baseline-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/proportion-paired-mean-diff-float-false.new.svg |only tests/testthat/_snaps/001_plotter/proportion-paired-mean-diff-float-true.new.svg |only tests/testthat/_snaps/001_plotter/proportion-sequential-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/proportion-unpaired-mean-diff-float-false.new.svg |only tests/testthat/_snaps/001_plotter/proportion-unpaired-mean-diff-float-true.new.svg |only tests/testthat/_snaps/001_plotter/proportion-unpaired-multigroup-mean-diff.new.svg |only tests/testthat/_snaps/001_plotter/two-groups-unpaired-mean-diff-colour-float-false.new.svg |only tests/testthat/_snaps/001_plotter/two-groups-unpaired-mean-diff-colour-float-true.new.svg |only tests/testthat/_snaps/001_plotter/two-groups-unpaired-mean-diff-float-false.new.svg |only tests/testthat/_snaps/001_plotter/two-groups-unpaired-mean-diff-float-true.new.svg |only tests/testthat/test_002_plot_components.R | 4 vignettes/tutorial_minimeta.Rmd | 2 40 files changed, 527 insertions(+), 739 deletions(-)
Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and
PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically
access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types.
Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between PubChemR versions 2.1.5 dated 2025-08-29 and 2.1.6 dated 2025-10-30
PubChemR-2.1.5/PubChemR/build |only PubChemR-2.1.5/PubChemR/inst/doc |only PubChemR-2.1.5/PubChemR/vignettes |only PubChemR-2.1.6/PubChemR/DESCRIPTION | 14 ++++++-------- PubChemR-2.1.6/PubChemR/MD5 | 16 ++-------------- PubChemR-2.1.6/PubChemR/inst/CITATION |only 6 files changed, 8 insertions(+), 22 deletions(-)
Title: Latent Variable Models
Description: A general implementation of Structural Equation Models
with latent variables (MLE, 2SLS, and composite likelihood
estimators) with both continuous, censored, and ordinal
outcomes (Holst and Budtz-Joergensen (2013) <doi:10.1007/s00180-012-0344-y>).
Mixture latent variable models and non-linear latent variable models
(Holst and Budtz-Joergensen (2020) <doi:10.1093/biostatistics/kxy082>).
The package also provides methods for graph exploration (d-separation,
back-door criterion), simulation of general non-linear latent variable
models, and estimation of influence functions for a broad range of
statistical models.
Author: Klaus K. Holst [aut, cre],
Brice Ozenne [ctb],
Thomas Gerds [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava versions 1.8.1 dated 2025-01-12 and 1.8.2 dated 2025-10-30
lava-1.8.1/lava/data/serotonin2.rda |only lava-1.8.1/lava/man/closed.testing.Rd |only lava-1.8.1/lava/man/serotonin2.Rd |only lava-1.8.1/lava/man/sim.Rd |only lava-1.8.2/lava/DESCRIPTION | 8 lava-1.8.2/lava/INDEX | 8 lava-1.8.2/lava/MD5 | 56 +-- lava-1.8.2/lava/NAMESPACE | 7 lava-1.8.2/lava/NEWS.md | 5 lava-1.8.2/lava/R/compare.R | 2 lava-1.8.2/lava/R/contr.R | 2 lava-1.8.2/lava/R/lava-package.R | 36 +- lava-1.8.2/lava/R/multipletesting.R | 167 +++++++--- lava-1.8.2/lava/R/sim.default.R | 7 lava-1.8.2/lava/R/sim.lvm.R | 39 +- lava-1.8.2/lava/README.md | 5 lava-1.8.2/lava/build/partial.rdb |binary lava-1.8.2/lava/build/vignette.rds |binary lava-1.8.2/lava/data/deprdiag.csv |only lava-1.8.2/lava/inst/doc/correlation.html | 102 +++--- lava-1.8.2/lava/inst/doc/influencefunction.R | 4 lava-1.8.2/lava/inst/doc/influencefunction.Rmd | 296 +++++++++---------- lava-1.8.2/lava/inst/doc/influencefunction.html | 143 ++++----- lava-1.8.2/lava/inst/doc/nonlinear.html | 66 ++-- lava-1.8.2/lava/man/closed_testing.Rd |only lava-1.8.2/lava/man/compare.Rd | 1 lava-1.8.2/lava/man/contr.Rd | 2 lava-1.8.2/lava/man/deprdiag.Rd |only lava-1.8.2/lava/man/figures/logohex.png |only lava-1.8.2/lava/man/hubble.Rd | 4 lava-1.8.2/lava/man/sim.default.Rd | 3 lava-1.8.2/lava/man/sim.lvm.Rd |only lava-1.8.2/lava/tests/testthat/test-closed_testing.R |only lava-1.8.2/lava/vignettes/influencefunction.Rmd | 296 +++++++++---------- 34 files changed, 659 insertions(+), 600 deletions(-)
Title: A Comprehensive Collection of Health and Human Motion Datasets
Description: Provides a broad collection of datasets focused on health, biomechanics, and human motion.
It includes clinical, physiological, and kinematic information from diverse sources,
covering aspects such as surgery outcomes, vital signs, rheumatoid arthritis, osteoarthritis,
accelerometry, gait analysis, motion sensing, and biomechanics experiments.
Designed for researchers, analysts, and students, the package facilitates exploration
and analysis of data related to health monitoring, physical activity, and rehabilitation.
Author: Oscar Alejandro Sialer Gallo [aut, cre]
Maintainer: Oscar Alejandro Sialer Gallo <alejandro.sialer.gallo@gmail.com>
Diff between healthmotionR versions 0.1.0 dated 2025-10-06 and 0.2.0 dated 2025-10-30
DESCRIPTION | 27 +++++--- MD5 | 70 +++++++++++----------- NAMESPACE | 1 NEWS.md |only R/data-documentation.R | 2 R/healthmotionR-packages.R | 2 R/view_datasets_healthmotionR.R |only inst/CITATION | 14 ++-- inst/doc/healthmotionR_vignette.html | 7 +- man/view_datasets_healthmotionR.Rd |only tests/testthat/test-AtrialFibrillation_list.R | 2 tests/testthat/test-BasicMotions_list.R | 2 tests/testthat/test-FingerMovements_char.R | 2 tests/testthat/test-HandMovementDir_char.R | 2 tests/testthat/test-Heartbeat_char.R | 2 tests/testthat/test-KinData_df.R | 2 tests/testthat/test-StandWalkJump_list.R | 2 tests/testthat/test-Stepping_df.R | 2 tests/testthat/test-acceldata2_list.R | 2 tests/testthat/test-acceldata_list.R | 2 tests/testthat/test-accelimp_list.R | 2 tests/testthat/test-admiral_vs_tbl_df.R | 2 tests/testthat/test-angle_walk_array.R | 2 tests/testthat/test-body_metrics_df.R | 2 tests/testthat/test-infant_walking_df.R | 2 tests/testthat/test-knee_speed_tbl_df.R | 2 tests/testthat/test-meniscal_list.R | 2 tests/testthat/test-motion_sense_list.R | 2 tests/testthat/test-motionpaths_list.R | 2 tests/testthat/test-osteoarthritis_df.R | 2 tests/testthat/test-rheuma_df.R | 2 tests/testthat/test-run_biomech_tbl_df.R | 2 tests/testthat/test-surgerydat_df.R | 2 tests/testthat/test-view_datasets_healthmotionR.R |only tests/testthat/test-vs_peds_tbl_df.R | 2 tests/testthat/test-walk_biomech_tbl_df.R | 2 tests/testthat/test-walking_df.R | 2 tests/testthat/test-z_labels_monitoring_df.R | 2 38 files changed, 96 insertions(+), 81 deletions(-)
Title: Grouped Hyper Data Frame: An Extension of Hyper Data Frame
Description: An S3 class 'groupedHyperframe' that
inherits from hyper data frame. Batch
processes on point-pattern hyper column.
Aggregation of function-value-table hyper
column(s) and numeric hyper column(s) over a
nested grouping structure.
Author: Tingting Zhan [aut, cre] ,
Inna Chervoneva [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.3.0 dated 2025-10-14 and 0.3.1 dated 2025-10-30
groupedHyperframe-0.3.0/groupedHyperframe/R/split_kmeans.R |only groupedHyperframe-0.3.0/groupedHyperframe/man/aggregate.groupedHyperframe.Rd |only groupedHyperframe-0.3.0/groupedHyperframe/man/cli_defunct_.Rd |only groupedHyperframe-0.3.0/groupedHyperframe/man/kmeans.Rd |only groupedHyperframe-0.3.0/groupedHyperframe/man/log_ppp.Rd |only groupedHyperframe-0.3.0/groupedHyperframe/man/split_kmeans.Rd |only groupedHyperframe-0.3.0/groupedHyperframe/man/vignette_methods.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/DESCRIPTION | 19 groupedHyperframe-0.3.1/groupedHyperframe/MD5 | 67 groupedHyperframe-0.3.1/groupedHyperframe/NAMESPACE | 55 groupedHyperframe-0.3.1/groupedHyperframe/R/Defunct.R | 70 groupedHyperframe-0.3.1/groupedHyperframe/R/aggregate.R | 63 groupedHyperframe-0.3.1/groupedHyperframe/R/append_marks.R | 1 groupedHyperframe-0.3.1/groupedHyperframe/R/as.groupedHyperframe.R | 20 groupedHyperframe-0.3.1/groupedHyperframe/R/data_doc.R | 5 groupedHyperframe-0.3.1/groupedHyperframe/R/interpolation.fv.R | 2 groupedHyperframe-0.3.1/groupedHyperframe/R/kmeans.R | 85 groupedHyperframe-0.3.1/groupedHyperframe/R/kmeans_S3.R |only groupedHyperframe-0.3.1/groupedHyperframe/R/loess.fv.R |only groupedHyperframe-0.3.1/groupedHyperframe/R/op_hyperframe.R | 931 ++++------ groupedHyperframe-0.3.1/groupedHyperframe/R/ppp_S3.R | 110 - groupedHyperframe-0.3.1/groupedHyperframe/R/rmax.R | 7 groupedHyperframe-0.3.1/groupedHyperframe/R/vignette.R | 92 groupedHyperframe-0.3.1/groupedHyperframe/R/vtrapz.R | 77 groupedHyperframe-0.3.1/groupedHyperframe/data/bib.rda |only groupedHyperframe-0.3.1/groupedHyperframe/inst/doc/groupedHyperframe.R | 56 groupedHyperframe-0.3.1/groupedHyperframe/inst/doc/groupedHyperframe.html | 125 - groupedHyperframe-0.3.1/groupedHyperframe/inst/doc/groupedHyperframe.qmd | 272 +- groupedHyperframe-0.3.1/groupedHyperframe/inst/extR |only groupedHyperframe-0.3.1/groupedHyperframe/man/Math.ppp.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/aggregate.hyperframe.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/as.groupedHyperframe.Rd | 3 groupedHyperframe-0.3.1/groupedHyperframe/man/batch.Rd | 5 groupedHyperframe-0.3.1/groupedHyperframe/man/bib.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/cli_.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/groupedHyperframe-package.Rd | 4 groupedHyperframe-0.3.1/groupedHyperframe/man/kmeans_etc.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/loess.fv.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/methods2kable.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/plot.pppkm.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/print.pppkm.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/split.hyperframekm.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/split.pppkm.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/split.pppkmlist.Rd |only groupedHyperframe-0.3.1/groupedHyperframe/man/visualize_vtrapz.Rd | 10 groupedHyperframe-0.3.1/groupedHyperframe/vignettes/groupedHyperframe.qmd | 272 +- 46 files changed, 1108 insertions(+), 1243 deletions(-)
More information about groupedHyperframe at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-16 0.1.1