Title: Methods and Measures for Semantic Network Analysis
Description: Implements several functions for the analysis of semantic networks including different network estimation algorithms, partial node bootstrapping (Kenett, Anaki, & Faust, 2014 <doi:10.3389/fnhum.2014.00407>), random walk simulation (Kenett & Austerweil, 2016 <http://alab.psych.wisc.edu/papers/files/Kenett16CreativityRW.pdf>), and a function to compute global network measures. Significance tests and plotting features are also implemented.
Author: Alexander P. Christensen [aut, cre] ,
Yoed N. Kenett [aut, ctb]
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNeT versions 1.4.4 dated 2023-08-12 and 1.4.5 dated 2025-11-03
DESCRIPTION | 23 MD5 | 82 R/NRW.R | 296 +- R/SemNeTShiny.R | 102 - R/bootSemNeT.R | 985 ++++----- R/compare_nets.R | 455 ++-- R/convert2igraph.R | 76 R/response.analysis.R | 304 +-- R/test.bootSemNeT.R | 1002 +++++----- R/utils-SemNeT.R | 3708 ++++++++++++++++++------------------- R/utils-SemNeTShiny.R | 4669 +++++++++++++++++++++++------------------------ man/ASPL.Rd | 74 man/CC.Rd | 74 man/CN.Rd | 122 - man/NRW.Rd | 124 - man/PF.Rd | 78 man/Q.Rd | 72 man/SemNeT-package.Rd | 76 man/SemNeTShiny.Rd | 108 - man/TMFG.Rd | 142 - man/bootSemNeT.Rd | 285 +- man/compare_nets.Rd | 212 +- man/convert2cytoscape.Rd | 96 man/convert2igraph.Rd | 4 man/equate.Rd | 88 man/finalize.Rd | 68 man/net.high.Rd | 48 man/net.low.Rd | 48 man/open.binary.Rd | 50 man/open.clean.Rd | 50 man/open.group.Rd | 50 man/plot.animateShiny.Rd | 88 man/plot.bootSemNeT.Rd | 78 man/plot.compareShiny.Rd | 141 - man/randnet.test.Rd | 110 - man/randwalk.Rd | 134 - man/response.analysis.Rd | 94 man/semnetmeas.Rd | 92 man/sim.fluency.Rd | 82 man/similarity.Rd | 150 - man/test.bootSemNeT.Rd | 304 +-- man/vignette.plots.Rd | 48 42 files changed, 7439 insertions(+), 7453 deletions(-)
Title: Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Description: Identification of ring borders on scanned image sections from dendrochronological samples. Processing of image reflectances to produce gray matrices and time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders or control of automatic detection. Routines to visually include/exclude ring borders on the R graphical devices, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to positive/negative extreme values in the smoothed time-series of gray values. Most of the in-package routines can be recursively implemented using the multiDetect() function.
Author: Wilson Lara [aut, cre] ,
Carlos Sierra [aut] ,
Felipe Bravo [aut]
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between measuRing versions 0.5.1 dated 2025-03-27 and 0.5.2 dated 2025-11-03
DESCRIPTION | 14 +++++++------- MD5 | 38 +++++++++++++++++++------------------- NEWS | 6 ++++++ R/dataSegments.R | 9 ++++++++- build/partial.rdb |binary man/colNarrow.Rd | 2 +- man/crossRings.Rd | 2 +- man/dataSegments.Rd | 2 +- man/grayDarker.Rd | 2 +- man/graySmoothed.Rd | 2 +- man/imageTogray.Rd | 2 +- man/lagIngray.Rd | 2 +- man/linearDetect.Rd | 2 +- man/multiDetect.Rd | 2 +- man/plotSegments.Rd | 2 +- man/reduceList.Rd | 2 +- man/ringBorders.Rd | 2 +- man/ringDetect.Rd | 2 +- man/ringSelect.Rd | 2 +- man/ringWidths.Rd | 2 +- 20 files changed, 55 insertions(+), 42 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer [aut, cre],
Celia Regal-Marques [aut]
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 3.1.0 dated 2025-10-27 and 3.1.1 dated 2025-11-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/LipidMS.R | 6 +----- README.md | 10 ++-------- 4 files changed, 9 insertions(+), 19 deletions(-)
Title: 'Schwab API' Interface
Description: Use R to interface with the 'Charles Schwab Trade API' <https://developer.schwab.com/>.
Functions include authentication, trading, price requests, account information, and option
chains. A user will need a Schwab brokerage account and Schwab Individual Developer app. See README
for authentication process and examples.
Author: Anthony Trevisan [aut, cre]
Maintainer: Anthony Trevisan <anthonytrevisan@gmail.com>
Diff between schwabr versions 0.1.3 dated 2025-02-24 and 0.1.4 dated 2025-11-03
DESCRIPTION | 6 - MD5 | 19 ++--- NAMESPACE | 1 NEWS.md | 7 + R/orders.R | 142 ++++++++++++++++++++++++++++++++++---- R/other.R | 22 ++++- README.md | 2 man/schwab_optionChain.Rd | 12 ++- man/schwab_placeOrder.Rd | 12 +++ man/schwab_replaceOrder.Rd |only tests/testthat/test-testOutputs.R | 3 11 files changed, 191 insertions(+), 35 deletions(-)
Title: Graph Community Detection Methods into Systematic Conservation
Planning
Description: An innovative tool-set that incorporates graph community detection
methods into systematic conservation planning. It is designed to
enhance spatial prioritization by focusing on the protection of
areas with high ecological connectivity. Unlike traditional
approaches that prioritize individual planning units, 'priorCON'
focuses on clusters of features that exhibit strong ecological
linkages. The 'priorCON' package is built upon the 'prioritizr'
package <doi:10.32614/CRAN.package.prioritizr>, using commercial
and open-source exact algorithm solvers that ensure optimal
solutions to prioritization problems.
Author: Christos Adam [aut, cre] ,
Aggeliki Doxa [aut] ,
Nikolaos Nagkoulis [aut] ,
Maria Papazekou [aut] ,
Antonios D. Mazaris [aut] ,
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between priorCON versions 0.1.6 dated 2025-08-19 and 0.1.7 dated 2025-11-03
DESCRIPTION | 6 +- MD5 | 24 ++++----- NAMESPACE | 2 NEWS.md | 8 +++ R/functions_connect.R | 112 +++++++++++++++++++++++++++++++------------ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction.html | 5 + man/basic_scenario.Rd | 2 man/connectivity_scenario.Rd | 2 man/get_outputs.Rd | 13 +++- man/preprocess_graphs.Rd | 11 ++-- 13 files changed, 126 insertions(+), 61 deletions(-)
Title: Similarity and Distance Quantification Between Probability
Functions
Description: Computes 46 optimized distance and similarity measures for comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.
Author: Hajk-Georg Drost [aut, cre] ,
Jakub Nowosad [ctb] ,
Andrew Brown [ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between philentropy versions 0.9.0 dated 2024-11-12 and 0.10.0 dated 2025-11-03
DESCRIPTION | 33 MD5 | 148 NAMESPACE | 1 NEWS.md | 14 R/RcppExports.R | 151 R/distance.R | 798 -- R/lin.cor.R | 23 R/utils.R | 3 README.md | 569 - build/vignette.rds |binary inst/doc/Distances.html | 5 inst/doc/Information_Theory.html | 5 inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 4 inst/doc/Many_Distances.R | 12 inst/doc/Many_Distances.Rmd | 24 inst/doc/Many_Distances.html |10323 ++++++++++++++++++++++++++++++++++- man/additive_symm_chi_sq.Rd | 2 man/avg.Rd | 2 man/bhattacharyya.Rd | 2 man/canberra.Rd | 2 man/chebyshev.Rd | 2 man/clark_sq.Rd | 2 man/cosine_dist.Rd | 2 man/czekanowski.Rd | 2 man/dice_dist.Rd | 2 man/dist_many_many.Rd | 15 man/dist_one_many.Rd | 23 man/dist_one_one.Rd | 2 man/distance.Rd | 11 man/divergence_sq.Rd | 2 man/euclidean.Rd | 2 man/fidelity.Rd | 2 man/gower.Rd | 2 man/harmonic_mean_dist.Rd | 2 man/hellinger.Rd | 2 man/inner_product.Rd | 2 man/intersection_dist.Rd | 2 man/jaccard.Rd | 2 man/jeffreys.Rd | 2 man/jensen_difference.Rd | 2 man/jensen_shannon.Rd | 2 man/k_divergence.Rd | 2 man/kulczynski_d.Rd | 2 man/kullback_leibler_distance.Rd | 2 man/kumar_hassebrook.Rd | 2 man/kumar_johnson.Rd | 2 man/lin.cor.Rd | 15 man/lorentzian.Rd | 2 man/manhattan.Rd | 2 man/matusita.Rd | 2 man/minkowski.Rd | 2 man/motyka.Rd | 2 man/neyman_chi_sq.Rd | 2 man/pearson_chi_sq.Rd | 2 man/prob_symm_chi_sq.Rd | 2 man/ruzicka.Rd | 2 man/soergel.Rd | 2 man/sorensen.Rd | 2 man/squared_chi_sq.Rd | 2 man/squared_chord.Rd | 2 man/squared_euclidean.Rd | 2 man/taneja.Rd | 2 man/tanimoto.Rd | 2 man/topsoe.Rd | 2 man/wave_hedges.Rd | 2 src/RcppExports.cpp | 124 src/dist_dispatch.h |only src/dist_matrix.cpp | 523 - src/distances.h | 2075 ------- src/distances_internal.h |only src/utils.h | 31 tests/testthat/test-dist-euclidean.R | 2 tests/testthat/test-distances.R | 81 vignettes/Introduction.Rmd | 2 vignettes/Many_Distances.Rmd | 24 76 files changed, 11430 insertions(+), 3701 deletions(-)
Title: Data Simulation Based on Latent Factors
Description: Generates data based on latent factor models. Data can be continuous, polytomous, dichotomous, or mixed. Skews, cross-loadings, wording effects, population errors, and local dependencies can be added. All parameters can be manipulated. Data categorization is based on Garrido, Abad, and Ponsoda (2011) <doi:10.1177/0013164410389489>.
Author: Alexander Christensen [aut, cre] ,
Luis Eduardo Garrido [aut] ,
Maria Dolores Nieto Canaveras [aut],
Hudson Golino [aut] ,
Marcos Jimenez [aut],
Francisco Abad [ctb],
Eduardo Garcia-Garzon [ctb],
Vithor Franco [aut]
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between latentFactoR versions 0.0.6 dated 2024-04-18 and 0.0.7 dated 2025-11-03
DESCRIPTION | 21 MD5 | 18 NEWS | 57 +- R/ESEM.R | 4 R/NEST.R | 137 ++--- R/add_population_error.R | 56 +- R/simulation_helpers.R | 178 +++--- R/utils-latentFactoR.R | 1199 +++++++++++++++++++++++--------------------- man/ESEM.Rd | 2 man/add_population_error.Rd | 4 10 files changed, 900 insertions(+), 776 deletions(-)
More information about vaccinationimpact at CRAN
Permanent link
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ.
NNG is a socket library for reliable, high-performance messaging over
in-process, IPC, TCP, WebSocket and secure TLS transports. Implements
'Scalability Protocols', a standard for common communications patterns
including publish/subscribe, request/reply and service discovery. As
its own threaded concurrency framework, provides a toolkit for
asynchronous programming and distributed computing. Intuitive 'aio'
objects resolve automatically when asynchronous operations complete,
and synchronisation primitives allow R to wait upon events signalled
by concurrent threads.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between nanonext versions 1.7.1 dated 2025-10-01 and 1.7.2 dated 2025-11-03
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 7 +++++++ R/aio.R | 2 +- R/sync.R | 4 +++- R/utils.R | 10 +++------- README.md | 9 ++++----- inst/doc/nanonext.html | 2 +- man/parse_url.Rd | 10 +++------- man/pipe_notify.Rd | 4 +++- man/unresolved.Rd | 2 +- src/comms.c | 18 ++++++++---------- src/nanonext.h | 1 + src/sync.c | 47 ++++++++++++++++++++--------------------------- src/thread.c | 12 ++++++++---- src/utils.c | 21 +++++++++------------ tests/tests.R | 2 +- 17 files changed, 92 insertions(+), 97 deletions(-)
Title: Lightweight Framework for Orchestrating Multi-Agent Large
Language Models
Description: Provides tools for creating agents with persistent state using
R6 classes <https://cran.r-project.org/package=R6> and the 'ellmer'
package <https://cran.r-project.org/package=ellmer>. Tracks prompts,
messages, and agent metadata for reproducible, multi-turn large language
model sessions.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between mini007 versions 0.2.0 dated 2025-10-29 and 0.2.1 dated 2025-11-03
DESCRIPTION | 10 MD5 | 18 NAMESPACE | 1 NEWS.md | 4 R/Agent.R | 12 R/LeadAgent.R | 20 + README.md | 545 +++++++++++++++++++++--------- man/Agent.Rd | 2 man/LeadAgent.Rd | 2 man/figures/README-unnamed-chunk-21-1.png |only tests |only 11 files changed, 447 insertions(+), 167 deletions(-)
Title: Joint Species Distribution Models
Description: Fits joint species distribution models ('jSDM') in a
hierarchical Bayesian framework (Warton and al. 2015
<doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in
'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize
computation efficiency.
Author: Ghislain Vieilledent [aut, cre] ,
Jeanne Clement [aut] ,
Frederic Gosselin [ctb] ,
CIRAD [cph, fnd]
Maintainer: Ghislain Vieilledent <ghislain.vieilledent@cirad.fr>
Diff between jSDM versions 0.2.6 dated 2023-07-22 and 0.2.7 dated 2025-11-03
DESCRIPTION | 48 MD5 | 32 NEWS.md | 22 R/get_residual_cor.R | 74 R/jSDM_binomial_probit_long_format.R | 2 README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/jSDM.R | 3 inst/doc/jSDM.Rmd | 7 inst/doc/jSDM.html | 2488 ++++++++++++++++++++++---------- inst/doc/proof.Rmd | 4 inst/doc/proof.html | 2384 +++++++++++++++++++++--------- man/jSDM_binomial_probit_long_format.Rd | 2 src/Rcpp_jSDM_useful.cpp | 16 vignettes/jSDM.Rmd | 7 vignettes/proof.Rmd | 4 17 files changed, 3542 insertions(+), 1556 deletions(-)
Title: Property-Based Testing
Description: Hedgehog will eat all your bugs.
'Hedgehog' is a property-based testing package in the spirit
of 'QuickCheck'. With 'Hedgehog', one can test properties
of their programs against randomly generated input, providing
far superior test coverage compared to unit testing. One of the
key benefits of 'Hedgehog' is integrated shrinking of
counterexamples, which allows one to quickly find the cause of
bugs, given salient examples when incorrect behaviour occurs.
Author: Huw Campbell [aut, cre]
Maintainer: Huw Campbell <huw.campbell@gmail.com>
Diff between hedgehog versions 0.1 dated 2018-08-22 and 0.2 dated 2025-11-03
DESCRIPTION | 12 MD5 | 44 - NAMESPACE | 2 R/gen.R | 6 R/property.R | 2 R/state.R | 2 R/testthat.R | 12 R/tree.R | 50 +- build/vignette.rds |binary inst/doc/hedgehog.R | 22 inst/doc/hedgehog.Rmd | 4 inst/doc/hedgehog.html | 891 ++++++++++++++++++++++++++++++++++++---- inst/doc/state-machines.R | 24 - inst/doc/state-machines.Rmd | 4 inst/doc/state-machines.html | 953 ++++++++++++++++++++++++++++++++++++------- man/command.Rd | 11 man/forall.Rd | 10 man/hedgehog.Rd | 1 man/tree.Rd | 1 man/tree.replicate.Rd | 9 vignettes/hedgehog-logo.png |binary vignettes/hedgehog.Rmd | 4 vignettes/state-machines.Rmd | 4 23 files changed, 1747 insertions(+), 321 deletions(-)
Title: Clustering with Compositional Data
Description: Cluster analysis with compositional data using the alpha--transformation. Relevant papers include: Tsagris M. and Kontemeniotis N. (2025), <doi:10.48550/arXiv.2509.05945>. Tsagris M.T., Preston S. and Wood A.T.A. (2011), <doi:10.48550/arXiv.1106.1451>. Garcia-Escudero Luis A., Gordaliza Alfonso, Matran Carlos, Mayo-Iscar Agustin. (2008), <doi:10.1214/07-AOS515>.
Author: Michail Tsagris [aut, cre],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalClust versions 1.1 dated 2025-09-24 and 1.2 dated 2025-11-03
DESCRIPTION | 12 ++++++------ MD5 | 14 ++++++++++---- NAMESPACE | 3 ++- R/alfa.R |only R/alfa.kmeans.R |only R/clust.plot.R |only R/index_max.R | 8 +++++--- man/CompositionalClust-package.Rd | 4 ++-- man/alfa.Rd |only man/alfa.kmeans.Rd |only man/clust.plot.Rd |only 11 files changed, 25 insertions(+), 16 deletions(-)
More information about CompositionalClust at CRAN
Permanent link
Title: Easily Build, Simulate, and Visualise Stock-and-Flow Models
Description: Stock-and-flow models are a computational method from the field of
system dynamics. They represent how systems change over time and are
mathematically equivalent to ordinary differential equations. 'sdbuildR'
(system dynamics builder) provides an intuitive interface for constructing
stock-and-flow models without requiring extensive domain knowledge. Models
can quickly be simulated and revised, supporting iterative development.
'sdbuildR' simulates models in 'R' and 'Julia', where 'Julia' offers unit
support and large-scale ensemble simulations. Additionally, 'sdbuildR' can
import models created in 'Insight Maker' (<https://insightmaker.com/>).
Author: Kyra Caitlin Evers [aut, cre, cph]
Maintainer: Kyra Caitlin Evers <kyra.c.evers@gmail.com>
Diff between sdbuildR versions 1.0.5 dated 2025-10-29 and 1.0.7 dated 2025-11-03
DESCRIPTION | 6 - MD5 | 24 +++--- NEWS.md | 8 ++ R/assemble_script_julia.R | 42 ++++++----- R/globals.R | 1 R/julia_setup.R | 103 ++++++++-------------------- R/simulate.R | 22 ++--- R/template.R | 4 - README.md | 6 + inst/Project.toml | 54 +++++++------- man/julia_status.Rd | 1 tests/testthat/test-assemble_script_julia.R | 1 tests/testthat/test-use_julia.R | 2 13 files changed, 124 insertions(+), 150 deletions(-)
More information about MannWhitneyCopula at CRAN
Permanent link
Title: Estimation of Environmental Variables and Genetic Parameters
Description: Performs analyzes and estimates of environmental covariates
and genetic parameters related to selection strategies and development
of superior genotypes. It has two main functionalities, the first being
about prediction models of covariates and environmental processes, while
the second deals with the estimation of genetic parameters and selection
strategies. Designed for researchers and professionals in genetics and
environmental sciences, the package combines statistical methods
for modeling and data analysis. This includes the plastochron estimate
proposed by Porta et al. (2024) <doi:10.1590/1807-1929/agriambi.v28n10e278299>,
Stress indices for genotype selection referenced by Ghazvini et al. (2024)
<doi:10.1007/s10343-024-00981-1>, the Environmental Stress Index described by
Tazzo et al. (2024) <https://revistas.ufg.br/vet/article/view/77035>,
industrial quality indices of wheat genotypes (Szareski et al., 2019),
<doi:10.4238/gmr18223>, Ear Indexes estimation [...truncated...]
Author: Willyan Junior Adorian Bandeira [aut, cre] ,
Ivan Ricardo Carvalho [aut, ctb] ,
Murilo Vieira Loro [aut, ctb] ,
Leonardo Cesar Pradebon [aut, ctb] ,
Jose Antonio Gonzalez da Silva [aut, ctb]
Maintainer: Willyan Junior Adorian Bandeira <bandeira.wjab@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2025-04-17
Diff between EstimateBreed versions 1.0.1 dated 2025-04-17 and 1.0.2 dated 2025-11-03
DESCRIPTION | 33 +++++++++++++++++---------------- MD5 | 14 +++++++------- NAMESPACE | 1 - R/zzz.R | 1 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/EnvironmentalAnalysis.html | 11 ++++++----- inst/doc/SelectionAnalysis.html | 9 +++++---- 8 files changed, 35 insertions(+), 34 deletions(-)
Title: Quality Assessment for Seasonal Adjustment
Description: Add-in to the 'RJDemetra' package on seasonal adjustments.
It allows to produce dashboards to summarise models and quickly check the quality of the seasonal adjustment.
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjdqa versions 0.1.5 dated 2024-06-15 and 0.1.6 dated 2025-11-03
DESCRIPTION | 18 +- MD5 | 31 ++-- NAMESPACE | 2 NEWS.md | 13 + R/autoplot.R |only R/sc_d_moving_holiday.R | 134 +++---------------- R/sc_d_net_effects.R | 296 ++----------------------------------------- R/sc_d_recent_history.R | 3 R/sc_d_seasonal.R | 28 ++-- R/sc_d_summary_diagnostics.R | 141 +++++--------------- R/sc_d_trading_day.R | 136 ++----------------- R/sc_dashboard.R | 25 --- R/simple_dashboard.R | 107 +++++++++++---- R/simple_dashboard2.R | 130 +----------------- README.md | 10 - man/plot.simple_dashboard.Rd | 12 - man/simple_dashboard.Rd | 15 +- 17 files changed, 269 insertions(+), 832 deletions(-)
Title: Correction Factors for Tree Plot Areas Intersected by Stand
Boundaries
Description: The German national forest inventory uses angle count sampling,
a sampling method first published as `Bitterlich, W.: Die Winkelzählmessung.
Allgemeine Forst- und Holzwirtschaftliche Zeitung, 58. Jahrg., Folge 11/12
vom Juni 1947` and extended by Grosenbaugh
(<https://academic.oup.com/jof/article-abstract/50/1/32/4684174>)
as probability proportional to size sampling.
When plots are located near stand boundaries, their sizes and hence
their probabilities need to be corrected.
Author: Andreas Dominik Cullmann [aut, cre],
Bernhard Boesch [ctb],
Christoph Fischer [ctb],
Gerald Kaendler [ctb]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between treePlotArea versions 2.1.0 dated 2024-04-04 and 3.0.0 dated 2025-11-03
DESCRIPTION | 8 +- MD5 | 16 ++--- NEWS.md | 8 ++ R/plot_tree_plot_area.R | 83 +++++++++++++++------------ build/vignette.rds |binary inst/NEWS.rd | 12 +++ inst/doc/An_Introduction_to_treePlotArea.pdf |binary inst/tinytest/test_plot.R | 4 - man/plot_tree_plot_area.Rd | 26 ++++++-- 9 files changed, 103 insertions(+), 54 deletions(-)
Title: Automated Reporting of Results and Statistical Models
Description: The aim of the 'report' package is to bridge the gap between
R’s output and the formatted results contained in your manuscript.
This package converts statistical models and data frames into textual
reports suited for publication, ensuring standardization and quality
in results reporting.
Author: Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Indrajeet Patil [aut] ,
Remi Theriault [aut, cre] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Rudolf Siegel [ctb] ,
Camden Bock [ctb]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between report versions 0.6.1 dated 2025-02-07 and 0.6.2 dated 2025-11-03
DESCRIPTION | 42 - MD5 | 206 ++++--- NEWS.md | 14 R/cite_easystats.R | 161 +++--- R/format_algorithm.R | 32 - R/format_model.R | 69 +- R/report.BFBayesFactor.R | 12 R/report.MixMod.R | 10 R/report.aov.R | 131 ++--- R/report.bayesfactor_models.R | 6 R/report.brmsfit.R | 278 +++++++++- R/report.character.R | 63 +- R/report.compare_performance.R | 52 +- R/report.data.frame.R | 105 ++-- R/report.estimate_contrasts.R | 17 R/report.factor.R | 28 - R/report.glmmTMB.R | 10 R/report.htest.R | 111 ++-- R/report.lavaan.R | 26 - R/report.lm.R | 520 ++++++++++++++------ R/report.lme.R | 10 R/report.lme4.R | 10 R/report.numeric.R | 108 +--- R/report.sessionInfo.R | 44 - R/report.stanreg.R | 66 +- R/report.test_performance.R | 51 + R/report_effectsize.R | 60 +- R/report_htest_chi2.R | 46 - R/report_htest_cor.R | 30 - R/report_htest_fisher.R | 40 - R/report_htest_friedman.R | 96 ++- R/report_htest_kruskal.R | 103 +++ R/report_htest_ttest.R | 26 - R/report_htest_wilcox.R | 16 R/report_info.R | 57 +- R/report_intercept.R | 25 R/report_misc.R | 12 R/report_parameters.R | 148 ++++- R/report_performance.R | 44 - R/report_sample.R | 32 - R/report_table.R | 30 - R/utils_combine_tables.R | 40 - R/utils_grouped_df.R | 23 README.md | 2 build/vignette.rds |binary inst/CITATION | 5 inst/WORDLIST | 8 inst/doc/cite_packages.html | 13 inst/doc/report.R | 12 inst/doc/report.Rmd | 4 inst/doc/report.html | 294 +++++------ inst/doc/report_table.html | 5 man/cite_easystats.Rd | 28 - man/format_formula.Rd | 6 man/report.BFBayesFactor.Rd | 2 man/report.aov.Rd | 9 man/report.bayesfactor_models.Rd | 2 man/report.brmsfit.Rd | 19 man/report.compare.loo.Rd | 2 man/report.compare_performance.Rd | 3 man/report.data.frame.Rd | 2 man/report.estimate_contrasts.Rd | 2 man/report.htest.Rd | 5 man/report.lavaan.Rd | 5 man/report.lm.Rd | 5 man/report.stanreg.Rd | 2 man/report.test_performance.Rd | 3 man/report_effectsize.Rd | 4 man/report_info.Rd | 4 man/report_intercept.Rd | 4 man/report_model.Rd | 4 man/report_parameters.Rd | 4 man/report_performance.Rd | 6 man/report_priors.Rd | 2 man/report_random.Rd | 6 man/report_statistics.Rd | 4 man/report_table.Rd | 6 man/report_text.Rd | 4 tests/testthat/_snaps/windows/report.brmsfit.md |only tests/testthat/_snaps/windows/report.data.frame.md | 12 tests/testthat/_snaps/windows/report.lavaan.md | 2 tests/testthat/_snaps/windows/report.lm.md | 2 tests/testthat/setup-00-toolchain.R |only tests/testthat/test-brms-performance-fix.R |only tests/testthat/test-cite_easystats.R |only tests/testthat/test-coverage-MixMod.R |only tests/testthat/test-coverage-brmsfit.R |only tests/testthat/test-coverage-compare-loo.R |only tests/testthat/test-coverage-glmmTMB.R |only tests/testthat/test-format_algorithm_formula.R |only tests/testthat/test-format_citation.R |only tests/testthat/test-glmmtmb-duplication-fix.R |only tests/testthat/test-issue-481-glmmtmb-duplication.R |only tests/testthat/test-report.BFBayesFactor.R |only tests/testthat/test-report.MixMod.R |only tests/testthat/test-report.bayesfactor_models.R | 47 + tests/testthat/test-report.brmsfit.R | 60 ++ tests/testthat/test-report.compare.loo.R |only tests/testthat/test-report.compare_performance.R |only tests/testthat/test-report.data.frame.R | 5 tests/testthat/test-report.estimate_contrasts.R |only tests/testthat/test-report.glmmTMB.R |only tests/testthat/test-report.htest-correlation.R | 31 - tests/testthat/test-report.lavaan.R | 1 tests/testthat/test-report.lm.R | 20 tests/testthat/test-report.lme.R |only tests/testthat/test-report.lmer.R | 1 tests/testthat/test-report.numeric.R |only tests/testthat/test-report.stanreg.R | 1 tests/testthat/test-report.survreg.R | 5 tests/testthat/test-report.test_performance.R |only tests/testthat/test-report_basic_methods.R |only tests/testthat/test-report_info_misc_text.R |only tests/testthat/test-report_stats_params.R |only tests/testthat/test-report_table.R |only tests/testthat/test-utils_helpers.R |only vignettes/report.Rmd | 4 117 files changed, 2295 insertions(+), 1392 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations
for bicopula theory. The lower, upper, product, and select other bicopula are implemented along
with operations including the diagonal, survival copula, dual of a copula, co-copula, and
numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical
derivatives and inverses of a bicopula are provided through which simulation is implemented.
Bicopula composition, convex combination, asymmetry extension, and products also are provided.
Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau,
Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-
Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and
positive/negative quadrant dependency, left (right) increasing (decreasing) are available.
Other features include Kullback-Leibler Divergence, Vuong Procedure, spectral measure, [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.2.9 dated 2025-09-29 and 2.2.11 dated 2025-11-03
copBasic-2.2.11/copBasic/DESCRIPTION | 8 ++++---- copBasic-2.2.11/copBasic/MD5 | 17 +++++++++-------- copBasic-2.2.11/copBasic/NAMESPACE | 3 ++- copBasic-2.2.11/copBasic/NEWS | 12 ++++++++++++ copBasic-2.2.11/copBasic/R/JOMAcop.R |only copBasic-2.2.11/copBasic/R/derCOP.R | 15 +++++++++++++++ copBasic-2.2.11/copBasic/build/partial.rdb |binary copBasic-2.2.11/copBasic/man/JOMAcop.Rd |only copBasic-2.2.11/copBasic/man/copBasic-package.Rd | 3 ++- copBasic-2.2.11/copBasic/man/lcomCOP.Rd | 2 +- copBasic-2.2.9/copBasic/man/LCOMDIA_GHcop.Rd |only 11 files changed, 45 insertions(+), 15 deletions(-)