Title: Simple, Consistent Wrappers for Common String Operations
Description: A consistent, simple and easy to use set of wrappers around
the fantastic 'stringi' package. All function and argument names (and
positions) are consistent, all functions deal with "NA"'s and zero
length vectors in the same way, and the output from one function is
easy to feed into the input of another.
Author: Hadley Wickham [aut, cre, cph],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between stringr versions 1.5.2 dated 2025-09-08 and 1.6.0 dated 2025-11-04
DESCRIPTION | 11 MD5 | 200 ++++---- NAMESPACE | 5 NEWS.md | 132 +++-- R/case.R | 91 +++ R/compat-obj-type.R | 30 - R/compat-purrr.R | 16 R/compat-types-check.R | 236 +++++---- R/conv.R | 2 R/count.R | 20 R/detect.R | 152 +++++- R/dup.R | 18 R/escape.R | 3 R/extract.R | 68 ++ R/glue.R | 13 R/interp.R | 62 +- R/length.R | 4 R/locate.R | 49 +- R/match.R | 16 R/modifiers.R | 44 + R/pad.R | 13 R/replace.R | 147 ++++-- R/sort.R | 47 - R/split.R | 60 +- R/sub.R | 31 - R/subset.R | 12 R/trim.R | 10 R/trunc.R | 30 - R/unique.R | 4 R/utils.R | 46 + R/view.R | 29 - R/word.R | 4 R/wrap.R | 25 - build/vignette.rds |binary inst/doc/from-base.R | 5 inst/doc/from-base.Rmd | 7 inst/doc/from-base.html | 898 ++++++++++++++++++------------------- inst/doc/locale-sensitive.R |only inst/doc/locale-sensitive.Rmd |only inst/doc/locale-sensitive.html |only inst/doc/regular-expressions.R | 15 inst/doc/regular-expressions.Rmd | 28 + inst/doc/regular-expressions.html | 139 +++-- inst/doc/stringr.R | 2 inst/doc/stringr.Rmd | 3 man/str_count.Rd | 3 man/str_detect.Rd | 4 man/str_dup.Rd | 5 man/str_extract.Rd | 3 man/str_glue.Rd | 5 man/str_like.Rd | 29 - man/str_locate.Rd | 3 man/str_match.Rd | 2 man/str_remove.Rd | 4 man/str_replace.Rd | 14 man/str_split.Rd | 3 man/str_sub.Rd | 14 man/str_subset.Rd | 4 man/str_to_camel.Rd |only man/str_view.Rd | 4 man/str_which.Rd | 4 po |only tests/testthat/_snaps/conv.md |only tests/testthat/_snaps/detect.md | 20 tests/testthat/_snaps/dup.md |only tests/testthat/_snaps/equal.md |only tests/testthat/_snaps/flatten.md |only tests/testthat/_snaps/interp.md |only tests/testthat/_snaps/match.md | 13 tests/testthat/_snaps/modifiers.md | 15 tests/testthat/_snaps/replace.md | 26 + tests/testthat/_snaps/split.md | 2 tests/testthat/_snaps/sub.md |only tests/testthat/_snaps/view.md | 4 tests/testthat/test-case.R | 45 + tests/testthat/test-conv.R | 7 tests/testthat/test-count.R | 17 tests/testthat/test-detect.R | 50 +- tests/testthat/test-dup.R | 23 tests/testthat/test-equal.R | 2 tests/testthat/test-escape.R | 4 tests/testthat/test-extract.R | 20 tests/testthat/test-flatten.R | 2 tests/testthat/test-glue.R | 8 tests/testthat/test-interp.R | 25 - tests/testthat/test-length.R | 6 tests/testthat/test-locate.R | 30 + tests/testthat/test-match.R | 59 +- tests/testthat/test-modifiers.R | 13 tests/testthat/test-pad.R | 24 tests/testthat/test-remove.R | 5 tests/testthat/test-replace.R | 65 ++ tests/testthat/test-sort.R | 6 tests/testthat/test-split.R | 38 + tests/testthat/test-sub.R | 22 tests/testthat/test-subset.R | 18 tests/testthat/test-trim.R | 19 tests/testthat/test-trunc.R | 42 + tests/testthat/test-unique.R | 8 tests/testthat/test-utils.R |only tests/testthat/test-view.R | 2 tests/testthat/test-word.R | 5 tests/testthat/test-wrap.R | 5 vignettes/from-base.Rmd | 7 vignettes/locale-sensitive.Rmd |only vignettes/regular-expressions.Rmd | 28 + vignettes/stringr.Rmd | 3 107 files changed, 2365 insertions(+), 1151 deletions(-)
Title: Estimating Hidden Population Size using Respondent Driven
Sampling Data
Description: Estimate the size of a networked population based on
respondent-driven sampling data. The package is part of the "RDS Analyst"
suite of packages for the analysis of respondent-driven sampling data.
See Handcock, Gile and Mar (2014) <doi:10.1214/14-EJS923>,
Handcock, Gile and Mar (2015) <doi:10.1111/biom.12255>,
Kim and Handcock (2021) <doi:10.1093/jssam/smz055>, and
McLaughlin, et. al. (2023) <doi:10.1214/23-AOAS1807>.
Author: Mark S. Handcock [aut, cre, cph] ,
Krista J. Gile [aut, cph],
Brian Kim [ctb],
Katherine R. McLaughlin [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between sspse versions 1.1.0-2 dated 2024-09-06 and 1.1.0-3 dated 2025-11-04
DESCRIPTION | 14 MD5 | 112 ++-- R/dsizeprior.R | 3 R/impute.visibility.R | 34 - R/likcmp.R | 10 R/likelihoodsize.R | 14 R/plot.sspse.R | 32 - R/poscmp.R | 26 R/poscmpwp.R | 30 - R/posnbinom.R | 10 R/pospln.R | 10 R/pospreddeg.R | 4 R/posteriornbinom.R | 14 R/posteriorsize.R | 176 +++--- R/print.summary.sspse.R | 2 R/sspse.utilities.R | 4 R/summary.size.R | 6 build/partial.rdb |binary man/impute.visibility.Rd | 9 man/plot.pospreddeg.Rd | 2 man/plot.sspse.Rd | 2 man/posize_warning.Rd | 14 man/pospreddeg.Rd | 2 man/posteriorsize.Rd | 18 man/print.summary.sspse.Rd | 2 man/summary.sspse.Rd | 2 src/dis.c | 36 - src/dis.h | 8 src/likelihoodcmp.c | 28 - src/likelihoodcmp.h | 6 src/mcmc.c | 48 - src/mcmc.h | 12 src/posteriorcmp.c | 28 - src/posteriorcmp.h | 6 src/posteriorcmp2.c | 18 src/posteriorcmp2.h | 4 src/posteriorcmpdisease.c | 895 +++++++++++++++++++--------------- src/posteriorcmpdisease_Ising.c |only src/posteriorcmpdisease_Ising.h |only src/posteriorcmpdisease_paired.aux.h |only src/posteriorcmpdisease_paired.h |only src/posteriorcmpdisease_paired_alth.h |only src/posteriorcmpdisease_u_given_d.h |only src/posteriorcmpvis.c | 48 - src/posteriorcmpvis.h | 10 src/posteriorcmpvis2.c | 54 +- src/posteriorcmpvis2.h | 8 src/posteriorcmpwpvis.c | 46 - src/posteriorcmpwpvis.h | 10 src/posteriorcmpwpvis2.c | 44 - src/posteriorcmpwpvis2.h | 8 src/posteriorcmpwpvis_binomial.c | 44 - src/posteriorcmpwpvis_binomial.h | 10 src/posteriorcmpwpvisdisease.c |only src/posteriorcmpwpvisdisease.h |only src/posteriornbinom.c | 24 src/posteriornbinom.h | 6 src/posteriorpln.c | 26 src/posteriorpln.h | 6 src/posteriorplndisease.c | 28 - src/posteriorplndisease.h | 6 61 files changed, 1120 insertions(+), 899 deletions(-)
Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for
R.
Author: Hadley Wickham [aut, cre] ,
Lionel Henry [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between purrr versions 1.1.0 dated 2025-07-10 and 1.2.0 dated 2025-11-04
purrr-1.1.0/purrr/R/deprec-map.R |only purrr-1.1.0/purrr/man/at_depth.Rd |only purrr-1.1.0/purrr/man/get-attr.Rd |only purrr-1.1.0/purrr/man/reduce_right.Rd |only purrr-1.1.0/purrr/tests/testthat/_snaps/deprec-map.md |only purrr-1.1.0/purrr/tests/testthat/test-deprec-map.R |only purrr-1.2.0/purrr/DESCRIPTION | 12 purrr-1.2.0/purrr/MD5 | 179 ++++++------- purrr-1.2.0/purrr/NAMESPACE | 7 purrr-1.2.0/purrr/NEWS.md | 30 ++ purrr-1.2.0/purrr/R/adverb-partial.R | 46 --- purrr-1.2.0/purrr/R/adverb-safely.R | 3 purrr-1.2.0/purrr/R/coerce.R | 17 - purrr-1.2.0/purrr/R/deprec-cross.R | 26 - purrr-1.2.0/purrr/R/deprec-invoke.R | 16 - purrr-1.2.0/purrr/R/deprec-lift.R | 12 purrr-1.2.0/purrr/R/deprec-prepend.R | 2 purrr-1.2.0/purrr/R/deprec-rerun.R | 2 purrr-1.2.0/purrr/R/deprec-splice.R | 2 purrr-1.2.0/purrr/R/deprec-utils.R | 23 - purrr-1.2.0/purrr/R/deprec-when.R | 2 purrr-1.2.0/purrr/R/detect.R | 31 -- purrr-1.2.0/purrr/R/every-some-none.R | 59 ++-- purrr-1.2.0/purrr/R/imap.R | 5 purrr-1.2.0/purrr/R/keep.R | 15 - purrr-1.2.0/purrr/R/list-flatten.R | 23 + purrr-1.2.0/purrr/R/list-modify.R | 2 purrr-1.2.0/purrr/R/list-simplify.R | 5 purrr-1.2.0/purrr/R/map-mapper.R | 13 purrr-1.2.0/purrr/R/map-raw.R | 12 purrr-1.2.0/purrr/R/map.R | 22 + purrr-1.2.0/purrr/R/map2.R | 8 purrr-1.2.0/purrr/R/parallelization.R | 63 +++- purrr-1.2.0/purrr/R/pluck-depth.R | 2 purrr-1.2.0/purrr/R/pluck.R | 13 purrr-1.2.0/purrr/R/pmap.R | 6 purrr-1.2.0/purrr/R/progress-bars.R | 20 + purrr-1.2.0/purrr/R/reduce.R | 79 ----- purrr-1.2.0/purrr/R/utils.R | 16 - purrr-1.2.0/purrr/README.md | 4 purrr-1.2.0/purrr/build/vignette.rds |binary purrr-1.2.0/purrr/inst/doc/base.R | 6 purrr-1.2.0/purrr/inst/doc/base.Rmd | 48 +-- purrr-1.2.0/purrr/inst/doc/base.html | 34 +- purrr-1.2.0/purrr/inst/doc/other-langs.Rmd | 6 purrr-1.2.0/purrr/inst/doc/other-langs.html | 9 purrr-1.2.0/purrr/inst/doc/purrr.R |only purrr-1.2.0/purrr/inst/doc/purrr.Rmd |only purrr-1.2.0/purrr/inst/doc/purrr.html |only purrr-1.2.0/purrr/man/accumulate.Rd | 9 purrr-1.2.0/purrr/man/auto_browse.Rd | 3 purrr-1.2.0/purrr/man/cross.Rd | 8 purrr-1.2.0/purrr/man/detect.Rd | 20 - purrr-1.2.0/purrr/man/every.Rd | 4 purrr-1.2.0/purrr/man/imap.Rd | 5 purrr-1.2.0/purrr/man/in_parallel.Rd | 63 +++- purrr-1.2.0/purrr/man/insistently.Rd | 3 purrr-1.2.0/purrr/man/keep.Rd | 6 purrr-1.2.0/purrr/man/keep_at.Rd | 5 purrr-1.2.0/purrr/man/list_flatten.Rd | 21 + purrr-1.2.0/purrr/man/map.Rd | 4 purrr-1.2.0/purrr/man/map2.Rd | 2 purrr-1.2.0/purrr/man/map_depth.Rd | 2 purrr-1.2.0/purrr/man/map_if.Rd | 2 purrr-1.2.0/purrr/man/map_raw.Rd | 2 purrr-1.2.0/purrr/man/negate.Rd | 4 purrr-1.2.0/purrr/man/partial.Rd | 19 - purrr-1.2.0/purrr/man/pluck.Rd | 14 - purrr-1.2.0/purrr/man/possibly.Rd | 3 purrr-1.2.0/purrr/man/purrr-package.Rd | 2 purrr-1.2.0/purrr/man/quietly.Rd | 3 purrr-1.2.0/purrr/man/safely.Rd | 3 purrr-1.2.0/purrr/man/slowly.Rd | 3 purrr-1.2.0/purrr/src/coerce.c | 40 -- purrr-1.2.0/purrr/src/every-some-none.c |only purrr-1.2.0/purrr/src/init.c | 6 purrr-1.2.0/purrr/tests/testthat/_snaps/adverb-partial.md | 18 - purrr-1.2.0/purrr/tests/testthat/_snaps/coerce.md | 32 -- purrr-1.2.0/purrr/tests/testthat/_snaps/detect.md | 15 - purrr-1.2.0/purrr/tests/testthat/_snaps/every-some-none.md | 117 ++++++++ purrr-1.2.0/purrr/tests/testthat/_snaps/list-flatten.md | 2 purrr-1.2.0/purrr/tests/testthat/_snaps/progress-bars.md |only purrr-1.2.0/purrr/tests/testthat/_snaps/reduce.md | 21 - purrr-1.2.0/purrr/tests/testthat/_snaps/utils.md | 6 purrr-1.2.0/purrr/tests/testthat/test-adverb-partial.R | 45 --- purrr-1.2.0/purrr/tests/testthat/test-coerce.R | 20 - purrr-1.2.0/purrr/tests/testthat/test-detect.R | 17 - purrr-1.2.0/purrr/tests/testthat/test-every-some-none.R | 144 ++++++++++ purrr-1.2.0/purrr/tests/testthat/test-list-flatten.R | 5 purrr-1.2.0/purrr/tests/testthat/test-list-simplify.R | 5 purrr-1.2.0/purrr/tests/testthat/test-map-mapper.R | 2 purrr-1.2.0/purrr/tests/testthat/test-progress-bars.R |only purrr-1.2.0/purrr/tests/testthat/test-reduce.R | 60 ---- purrr-1.2.0/purrr/tests/testthat/test-utils.R | 2 purrr-1.2.0/purrr/vignettes/base.Rmd | 48 +-- purrr-1.2.0/purrr/vignettes/other-langs.Rmd | 6 purrr-1.2.0/purrr/vignettes/purrr.Rmd |only 97 files changed, 828 insertions(+), 873 deletions(-)
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem, including consistency, traceability, and Nonmem compatibility of Data. Rigorously checks final Nonmem datasets. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre],
Brian Reilly [ctb],
Eric Anderson [ctb]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.2.1 dated 2025-07-07 and 0.2.2 dated 2025-11-04
NMdata-0.2.1/NMdata/tests/testthat/testOutput/pk.RData |only NMdata-0.2.1/NMdata/tests/testthat/testReference/NMscanInput_7.rds |only NMdata-0.2.1/NMdata/tests/testthat/testReference/addOmegaCorr_01.rds |only NMdata-0.2.2/NMdata/DESCRIPTION | 6 NMdata-0.2.2/NMdata/MD5 | 287 ++++-- NMdata-0.2.2/NMdata/NAMESPACE | 9 NMdata-0.2.2/NMdata/NEWS.md | 114 ++ NMdata-0.2.2/NMdata/R/NMapplyFilters.R | 234 ++--- NMdata-0.2.2/NMdata/R/NMcheckData.R | 12 NMdata-0.2.2/NMdata/R/NMctl.R |only NMdata-0.2.2/NMdata/R/NMextractFormats.R |only NMdata-0.2.2/NMdata/R/NMextractText.R | 11 NMdata-0.2.2/NMdata/R/NMgenText.R | 12 NMdata-0.2.2/NMdata/R/NMreadExt.R | 41 NMdata-0.2.2/NMdata/R/NMreadFilters.R | 38 NMdata-0.2.2/NMdata/R/NMreadInits.R | 216 +++- NMdata-0.2.2/NMdata/R/NMreadParsText.R | 84 + NMdata-0.2.2/NMdata/R/NMreadSection.R | 4 NMdata-0.2.2/NMdata/R/NMreadTab.R | 2 NMdata-0.2.2/NMdata/R/NMreadTabSlow.R | 2 NMdata-0.2.2/NMdata/R/NMrelate.R | 3 NMdata-0.2.2/NMdata/R/NMscanData.R | 2 NMdata-0.2.2/NMdata/R/NMscanInput.R | 45 - NMdata-0.2.2/NMdata/R/NMscanTables.R | 8 NMdata-0.2.2/NMdata/R/NMtransInp.R | 434 ++++++++-- NMdata-0.2.2/NMdata/R/NMwriteSectionOne.R | 11 NMdata-0.2.2/NMdata/R/addParType.R | 147 ++- NMdata-0.2.2/NMdata/R/colLabels.R | 18 NMdata-0.2.2/NMdata/R/compareCols.R | 17 NMdata-0.2.2/NMdata/R/dcastSe.R | 2 NMdata-0.2.2/NMdata/R/dtFillObs.R |only NMdata-0.2.2/NMdata/R/dtapply.R |only NMdata-0.2.2/NMdata/R/fnAppend.R | 68 + NMdata-0.2.2/NMdata/R/lapplydt.R |only NMdata-0.2.2/NMdata/R/mergeCheck.R | 12 NMdata-0.2.2/NMdata/R/summary_NMdata.R | 2 NMdata-0.2.2/NMdata/R/tmpcol.R | 48 - NMdata-0.2.2/NMdata/README.md | 4 NMdata-0.2.2/NMdata/man/NMapplyFilters.Rd | 42 NMdata-0.2.2/NMdata/man/NMreadExt.Rd | 32 NMdata-0.2.2/NMdata/man/NMreadParsText.Rd | 12 NMdata-0.2.2/NMdata/man/NMscanInput.Rd | 45 - NMdata-0.2.2/NMdata/man/NMtransInp.Rd | 21 NMdata-0.2.2/NMdata/man/addParType.Rd |only NMdata-0.2.2/NMdata/man/addParameter.Rd |only NMdata-0.2.2/NMdata/man/addSameBlocks.Rd |only NMdata-0.2.2/NMdata/man/as.NMctl.Rd |only NMdata-0.2.2/NMdata/man/colLabels.Rd | 6 NMdata-0.2.2/NMdata/man/compareCols.Rd | 6 NMdata-0.2.2/NMdata/man/dcastSe.Rd | 2 NMdata-0.2.2/NMdata/man/dtFillCols.Rd |only NMdata-0.2.2/NMdata/man/dtapply.Rd |only NMdata-0.2.2/NMdata/man/fnAppend.Rd | 19 NMdata-0.2.2/NMdata/man/initsToExt.Rd | 9 NMdata-0.2.2/NMdata/man/lapplydt.Rd |only NMdata-0.2.2/NMdata/man/readCtl.Rd |only NMdata-0.2.2/NMdata/man/tmpcol.Rd | 3 NMdata-0.2.2/NMdata/tests/testthat/testData/R/run_models.R | 14 NMdata-0.2.2/NMdata/tests/testthat/testData/data/xgxr6.csv |only NMdata-0.2.2/NMdata/tests/testthat/testData/data/xgxr6.rds |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/backup_pred030 |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/backup_xgxr054 |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/backup_xgxr055 |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/backup_xgxr056 |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.ext |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.lst |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.mod | 22 NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.phi |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.pnm |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.shk |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030.xml |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/pred030_res.txt |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.ext |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.lst |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.phi |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.shk |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.txt |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr054.xml |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.ext |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.lst |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.phi |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.shk |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.txt |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr055.xml |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.ext |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.lst |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.phi |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.shk |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.txt |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr056.xml |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr057.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr058.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.ext |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.lst |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.mod |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.phi |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.shk |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059.xml |only NMdata-0.2.2/NMdata/tests/testthat/testData/nonmem/xgxr059_res.txt |only NMdata-0.2.2/NMdata/tests/testthat/testOutput/xgxr032_VarCov_1 |only NMdata-0.2.2/NMdata/tests/testthat/testReference/NMreadExt_01.rds |binary NMdata-0.2.2/NMdata/tests/testthat/testReference/NMreadExt_02.rds |binary NMdata-0.2.2/NMdata/tests/testthat/testReference/NMreadExt_03.rds |binary 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NMdata-0.2.2/NMdata/tests/testthat/testReference/lapplydt_01.rds |only NMdata-0.2.2/NMdata/tests/testthat/testReference/lapplydt_02.rds |only NMdata-0.2.2/NMdata/tests/testthat/test_NMapplyFilters.R |only NMdata-0.2.2/NMdata/tests/testthat/test_NMcheckColnames.R | 18 NMdata-0.2.2/NMdata/tests/testthat/test_NMcheckDataFile.R | 4 NMdata-0.2.2/NMdata/tests/testthat/test_NMreadExt.R | 22 NMdata-0.2.2/NMdata/tests/testthat/test_NMreadFilters.R |only NMdata-0.2.2/NMdata/tests/testthat/test_NMreadInits.R | 103 ++ NMdata-0.2.2/NMdata/tests/testthat/test_NMreadParText.R | 136 +++ NMdata-0.2.2/NMdata/tests/testthat/test_NMrelate.R | 43 NMdata-0.2.2/NMdata/tests/testthat/test_NMscanData.R | 107 ++ NMdata-0.2.2/NMdata/tests/testthat/test_NMscanInput.R | 184 +++- NMdata-0.2.2/NMdata/tests/testthat/test_NMtransInp.R |only NMdata-0.2.2/NMdata/tests/testthat/test_NMwriteSectionOne.R |only NMdata-0.2.2/NMdata/tests/testthat/test_addCor.R | 13 NMdata-0.2.2/NMdata/tests/testthat/test_dtapply.R |only NMdata-0.2.2/NMdata/tests/testthat/test_fnAppend.R | 33 NMdata-0.2.2/NMdata/tests/testthat/test_lapplydt.R |only NMdata-0.2.2/NMdata/tests/testthat/test_tmpcol.R |only 176 files changed, 2174 insertions(+), 615 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for
performance. Offers convenient utilities for working with in-memory and
larger-than-memory data while retaining full 'dplyr' compatibility.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 1.1.2 dated 2025-09-18 and 1.1.3 dated 2025-11-04
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 15 +++++++++++++++ R/read_file_duckdb.R | 6 +++++- R/sql.R | 2 +- inst/doc/developers.html | 6 +++--- inst/doc/duckdb.html | 10 +++++----- inst/doc/extend.html | 8 ++++---- inst/doc/fallback.html | 2 +- inst/doc/large.html | 4 ++-- inst/doc/limits.html | 8 ++++---- inst/doc/prudence.html | 6 +++--- man/read_sql_duckdb.Rd | 2 ++ tests/testthat/test-read_csv_duckdb.R | 14 ++++++++++++++ 14 files changed, 75 insertions(+), 40 deletions(-)
Title: Estimation of Organic Carbon Stocks and Sequestration Rates from
Soil Core Data
Description: Tools to estimate soil organic carbon stocks and sequestration rates
in blue carbon ecosystems. 'BlueCarbon' contains functions to estimate and correct
for core compaction, estimate sample thickness, estimate organic carbon content
from organic matter content, estimate organic carbon stocks and
sequestration rates, and visualize the error of carbon stock extrapolation.
Author: Nerea Pineiro-Juncal [aut, cre, cph] ,
Julen Astigarraga [aut] ,
Valentina Costa [aut] ,
Marcio Martins [aut] ,
Francisco Rodriguez-Sanchez [aut]
Maintainer: Nerea Pineiro-Juncal <np.juncal@gmail.com>
Diff between BlueCarbon versions 0.1.0 dated 2025-02-21 and 0.1.1 dated 2025-11-04
BlueCarbon-0.1.0/BlueCarbon/man/figures/estimate_h().png |only BlueCarbon-0.1.1/BlueCarbon/DESCRIPTION | 30 + BlueCarbon-0.1.1/BlueCarbon/MD5 | 36 +- BlueCarbon-0.1.1/BlueCarbon/NEWS.md | 4 BlueCarbon-0.1.1/BlueCarbon/R/estimate_oc.R | 6 BlueCarbon-0.1.1/BlueCarbon/R/estimate_oc_stock.R | 2 BlueCarbon-0.1.1/BlueCarbon/R/test_extrapolation.R | 4 BlueCarbon-0.1.1/BlueCarbon/README.md | 207 +++++++------ BlueCarbon-0.1.1/BlueCarbon/build/partial.rdb |binary BlueCarbon-0.1.1/BlueCarbon/build/vignette.rds |only BlueCarbon-0.1.1/BlueCarbon/inst/CITATION | 2 BlueCarbon-0.1.1/BlueCarbon/inst/doc |only BlueCarbon-0.1.1/BlueCarbon/man/BlueCarbon-package.Rd | 4 BlueCarbon-0.1.1/BlueCarbon/man/estimate_oc_stock.Rd | 2 BlueCarbon-0.1.1/BlueCarbon/man/figures/BC_workflow.png |binary BlueCarbon-0.1.1/BlueCarbon/man/figures/compaction.png |binary BlueCarbon-0.1.1/BlueCarbon/man/figures/estimate_h.png |only BlueCarbon-0.1.1/BlueCarbon/man/figures/estimate_stock.png |binary BlueCarbon-0.1.1/BlueCarbon/man/figures/logo.png |only BlueCarbon-0.1.1/BlueCarbon/vignettes |only 20 files changed, 174 insertions(+), 123 deletions(-)
Title: Basic Sensitivity Analysis of Epidemiological Results
Description: Basic sensitivity analysis of the observed relative risks
adjusting for unmeasured confounding and misclassification of the
exposure/outcome, or both. It follows the bias analysis methods and
examples from the book by Fox M.P., MacLehose R.F., and Lash T.L. "Applying
Quantitative Bias Analysis to Epidemiologic Data, second ed.", ('Springer', 2021).
Author: Denis Haine [aut, cre]
Maintainer: Denis Haine <cheval@zaclys.net>
Diff between episensr versions 2.0.0 dated 2025-05-15 and 2.1.0 dated 2025-11-04
episensr-2.0.0/episensr/R/boot.bias.R |only episensr-2.0.0/episensr/R/confounders.array.R |only episensr-2.0.0/episensr/R/confounders.evalue.R |only episensr-2.0.0/episensr/R/confounders.ext.R |only episensr-2.0.0/episensr/R/confounders.limit.R |only episensr-2.0.0/episensr/R/plot.episensr.booted.R |only episensr-2.0.0/episensr/R/plot.episensr.probsens.R |only episensr-2.0.0/episensr/R/print.episensr.booted.R |only episensr-2.0.0/episensr/R/probsens.irr.R |only episensr-2.0.0/episensr/R/probsens.irr.conf.R |only episensr-2.0.0/episensr/man/boot.bias.Rd |only episensr-2.0.0/episensr/man/confounders.array.Rd |only episensr-2.0.0/episensr/man/confounders.evalue.Rd |only episensr-2.0.0/episensr/man/confounders.ext.Rd |only episensr-2.0.0/episensr/man/confounders.limit.Rd |only episensr-2.0.0/episensr/man/plot.episensr.booted.Rd |only episensr-2.0.0/episensr/man/plot.episensr.probsens.Rd |only episensr-2.0.0/episensr/man/print.episensr.booted.Rd |only episensr-2.0.0/episensr/man/probsens.irr.Rd |only episensr-2.0.0/episensr/man/probsens.irr.conf.Rd |only episensr-2.0.0/episensr/tests/testthat/test-confounders.array.R |only episensr-2.0.0/episensr/tests/testthat/test-confounders.emm.R |only episensr-2.0.0/episensr/tests/testthat/test-confounders.evalue.R |only episensr-2.0.0/episensr/tests/testthat/test-confounders.ext.R |only episensr-2.0.0/episensr/tests/testthat/test-confounders.limit.R |only episensr-2.0.0/episensr/tests/testthat/test-confounders.poly.R |only episensr-2.1.0/episensr/DESCRIPTION | 12 - episensr-2.1.0/episensr/MD5 | 116 +++++----- episensr-2.1.0/episensr/NAMESPACE | 19 + episensr-2.1.0/episensr/NEWS.md | 17 + episensr-2.1.0/episensr/R/boot_bias.r |only episensr-2.1.0/episensr/R/confounders_array.R |only episensr-2.1.0/episensr/R/confounders_evalue.R |only episensr-2.1.0/episensr/R/confounders_ext.R |only episensr-2.1.0/episensr/R/confounders_limit.R |only episensr-2.1.0/episensr/R/confounding.R | 46 +-- episensr-2.1.0/episensr/R/misclassification.R | 49 +++- episensr-2.1.0/episensr/R/plot.episensr_booted.R |only episensr-2.1.0/episensr/R/plot.episensr_probsens.R |only episensr-2.1.0/episensr/R/print.episensr.R | 6 episensr-2.1.0/episensr/R/print.episensr_booted.R |only episensr-2.1.0/episensr/R/probsens_irr.R |only episensr-2.1.0/episensr/R/probsens_irr_conf.R |only episensr-2.1.0/episensr/R/rename.R |only episensr-2.1.0/episensr/R/selection.R | 49 +++- episensr-2.1.0/episensr/README.md | 19 - episensr-2.1.0/episensr/build/vignette.rds |binary episensr-2.1.0/episensr/inst/CITATION | 6 episensr-2.1.0/episensr/inst/doc/b_probabilistic.Rmd | 6 episensr-2.1.0/episensr/inst/doc/b_probabilistic.html | 26 +- episensr-2.1.0/episensr/inst/doc/c_multiple_bias.Rmd | 2 episensr-2.1.0/episensr/inst/doc/c_multiple_bias.html | 8 episensr-2.1.0/episensr/inst/doc/d_other_sens.R | 18 - episensr-2.1.0/episensr/inst/doc/d_other_sens.Rmd | 24 +- episensr-2.1.0/episensr/inst/doc/d_other_sens.html | 26 +- episensr-2.1.0/episensr/inst/doc/episensr.R | 2 episensr-2.1.0/episensr/inst/doc/episensr.Rmd | 24 +- episensr-2.1.0/episensr/inst/doc/episensr.html | 26 +- episensr-2.1.0/episensr/man/boot_bias.Rd |only episensr-2.1.0/episensr/man/confounders.Rd | 52 ++-- episensr-2.1.0/episensr/man/confounders_array.Rd |only episensr-2.1.0/episensr/man/confounders_evalue.Rd |only episensr-2.1.0/episensr/man/confounders_ext.Rd |only episensr-2.1.0/episensr/man/confounders_limit.Rd |only episensr-2.1.0/episensr/man/misclass.Rd | 20 + episensr-2.1.0/episensr/man/misclass_cov.Rd | 2 episensr-2.1.0/episensr/man/plot.episensr_booted.Rd |only episensr-2.1.0/episensr/man/plot.episensr_probsens.Rd |only episensr-2.1.0/episensr/man/plot.mbias.Rd | 4 episensr-2.1.0/episensr/man/print.episensr_booted.Rd |only episensr-2.1.0/episensr/man/probsens_irr.Rd |only episensr-2.1.0/episensr/man/probsens_irr_conf.Rd |only episensr-2.1.0/episensr/man/rename.Rd |only episensr-2.1.0/episensr/man/selection.Rd | 26 +- episensr-2.1.0/episensr/tests/testthat/test-boot.R | 8 episensr-2.1.0/episensr/tests/testthat/test-confounders_array.R |only episensr-2.1.0/episensr/tests/testthat/test-confounders_emm.R |only episensr-2.1.0/episensr/tests/testthat/test-confounders_evalue.R |only episensr-2.1.0/episensr/tests/testthat/test-confounders_ext.R |only episensr-2.1.0/episensr/tests/testthat/test-confounders_limit.R |only episensr-2.1.0/episensr/tests/testthat/test-confounders_poly.R |only episensr-2.1.0/episensr/tests/testthat/test-probsens.R | 76 +++--- episensr-2.1.0/episensr/vignettes/b_probabilistic.Rmd | 6 episensr-2.1.0/episensr/vignettes/c_multiple_bias.Rmd | 2 episensr-2.1.0/episensr/vignettes/d_other_sens.Rmd | 24 +- episensr-2.1.0/episensr/vignettes/episensr.Rmd | 24 +- 86 files changed, 434 insertions(+), 311 deletions(-)
Title: Dimension Reduction Methods for Multivariate Time Series
Description: Estimates VAR and VARX models with Structured Penalties.
Author: Will Nicholson [cre, aut],
David Matteson [aut],
Jacob Bien [aut]
Maintainer: Will Nicholson <wbn8@cornell.edu>
Diff between BigVAR versions 1.1.3 dated 2025-06-28 and 1.1.4 dated 2025-11-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/BigVAR.html | 18 +++++------------- src/ExperimentalBigVARFunctionsX.cpp | 16 ++++++++-------- 4 files changed, 20 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-25 0.2.2
2025-02-01 0.2.1
2024-10-16 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-06 0.1.9
2025-08-27 0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-09 0.5.7
2023-10-04 0.5.6
2023-01-23 0.5.5
2022-11-07 0.5.4
2022-08-25 0.5.3
2022-08-19 0.5.2
2022-02-08 0.5.0
2021-10-29 0.4.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-20 0.7-30
2024-07-09 0.6-192
2024-06-29 0.6-186
2024-01-15 0.6-163
2022-09-06 0.6-142
2022-05-27 0.6-135
Title: ROC-Optimizing Binary Classifiers
Description: Implements ROC (Receiver Operating Characteristic)–Optimizing
Binary Classifiers, supporting both linear and kernel models. Both model
types provide a variety of surrogate loss functions. In addition, linear
models offer multiple regularization penalties, whereas kernel models
support a range of kernel functions. Scalability for large datasets is
achieved through approximation-based options, which accelerate training
and make fitting feasible on large data. Utilities are provided for model
training, prediction, and cross-validation. The implementation builds on
the ROC-Optimizing Support Vector Machines. For more information, see
Hernàndez-Orallo, José, et al. (2004) <doi:10.1145/1046456.1046489>,
presented in the ROC Analysis in AI Workshop (ROCAI-2004).
Author: Gimun Bae [aut, cre],
Seung Jun Shin [aut]
Maintainer: Gimun Bae <gimunbae0201@gmail.com>
Diff between roclab versions 0.1.3 dated 2025-10-28 and 0.1.4 dated 2025-11-04
DESCRIPTION | 8 MD5 | 26 - NAMESPACE | 6 R/roc.R |only R/roclearn.R | 706 ++++++++++++++++++------------------- README.md | 18 inst/doc/roclab-intro.R | 50 +- inst/doc/roclab-intro.Rmd | 50 +- inst/doc/roclab-intro.html | 181 +++++---- man/plot_roc.Rd |only tests/testthat/test-cv.kroclearn.R | 2 tests/testthat/test-cv.roclearn.R | 2 tests/testthat/test-kroclearn.R | 31 + tests/testthat/test-roclearn.R | 36 + vignettes/roclab-intro.Rmd | 50 +- 15 files changed, 668 insertions(+), 498 deletions(-)
Title: Flexible Non-Linear Least Square Model Fitting
Description: Provides tools for flexible non-linear least squares model fitting using general-purpose optimization techniques. The package supports a variety of optimization algorithms, including those provided by the 'optimx' package, making it suitable for handling complex non-linear models. Features include parallel processing support via the 'future' and 'foreach' packages, comprehensive model diagnostics, and visualization capabilities. Implements methods described in Nash and Varadhan (2011, <doi:10.18637/jss.v043.i09>).
Author: Johan Aparicio [cre, aut],
Jeffrey Endelman [aut],
University of Wisconsin Madison [cph]
Maintainer: Johan Aparicio <aparicioarce@wisc.edu>
This is a re-admission after prior archival of version 1.2.0 dated 2025-04-16
Diff between flexFitR versions 1.2.0 dated 2025-04-16 and 1.2.1 dated 2025-11-04
DESCRIPTION | 8 +- MD5 | 28 ++++----- NEWS.md | 127 +++++++++++++++++++++-------------------- R/02_modeler.R | 16 +++-- R/14_tangent.R | 11 +++ README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/canopy-model.html | 20 +++--- inst/doc/how_to_start.html | 38 ++++++------ inst/doc/maturity-model.html | 24 +++++-- inst/doc/plotting.html | 6 - inst/doc/predicted_values.html | 16 ++--- man/compute_tangent.Rd | 3 man/dot-fitter_curve.Rd | 17 ++++- 15 files changed, 183 insertions(+), 134 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.6.0 dated 2025-10-28 and 1.6.1 dated 2025-11-04
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 11 +++++++++++ R/accounts.R | 12 ++++++++++-- R/http.R | 14 ++++++++++---- R/ide.R | 6 ++++-- man/connectSPCSUser.Rd | 8 ++++++++ tests/testthat/_snaps/ide.md | 24 ++++++++++++++++++++++++ tests/testthat/test-http.R | 17 ----------------- tests/testthat/test-ide.R | 18 ++++++++++++++++++ tests/testthat/test-spcs.R | 36 +++++++++++++++++++++++++++++++++++- 11 files changed, 133 insertions(+), 39 deletions(-)
Title: A Pharmacometrics Data Transformation and Analysis Tool
Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between ruminate versions 0.3.1 dated 2025-01-10 and 0.3.2 dated 2025-11-04
DESCRIPTION | 9 ++--- MD5 | 9 ++--- R/simulate_rules.R | 55 +++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/noncompartmental_analysis.html | 8 ++-- tests/testthat/test-rxode2.R |only 6 files changed, 51 insertions(+), 30 deletions(-)