Title: Client for Rserve
Description: Client for Rserve, allowing to connect to Rserve instances and issue commands.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between RSclient versions 0.7-10 dated 2023-11-28 and 0.7-11 dated 2025-11-06
DESCRIPTION | 13 ++++++++----- MD5 | 15 ++++++++------- NEWS | 7 +++++++ man/RCC.Rd | 5 ++++- src/cli.c | 30 +++++++++++++++++++++++++++++- src/qap.h | 1 + src/qap_decode.c | 10 +++++++--- src/qap_encode.c | 1 - src/rcompat.h |only 9 files changed, 64 insertions(+), 18 deletions(-)
Title: Fit Growth Curves to Fish Data
Description: Fit growth models to otoliths and/or tagging data, using the 'RTMB'
package and maximum likelihood. The otoliths (or similar measurements of age)
provide direct observed coordinates of age and length. The tagging data
provide information about the observed length at release and length at
recapture at a later time, where the age at release is unknown and estimated
as a vector of parameters. The growth models provided by this package can be
fitted to otoliths only, tagging data only, or a combination of the two.
Growth variability can be modelled as constant or increasing with length.
Author: Arni Magnusson [aut, cre],
Mark Maunder [aut]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between fishgrowth versions 1.0.3 dated 2025-10-01 and 1.0.4 dated 2025-11-06
DESCRIPTION | 8 ++++---- MD5 | 39 ++++++++++++++++++++------------------- NEWS.md | 9 +++++++++ R/gcm.R | 10 +++++++++- R/gompertz.R | 10 +++++++++- R/gompertzo.R | 10 +++++++++- R/na_omit.R |only R/richards.R | 10 +++++++++- R/richardso.R | 10 +++++++++- R/schnute3.R | 10 +++++++++- R/vonbert.R | 10 +++++++++- R/vonberto.R | 10 +++++++++- build/partial.rdb |binary man/gcm.Rd | 5 ++++- man/gompertz.Rd | 5 ++++- man/gompertzo.Rd | 5 ++++- man/richards.Rd | 5 ++++- man/richardso.Rd | 5 ++++- man/schnute3.Rd | 5 ++++- man/vonbert.Rd | 5 ++++- man/vonberto.Rd | 5 ++++- 21 files changed, 137 insertions(+), 39 deletions(-)
Title: Spatial Projection of Network Signals along Geodesic Paths
Description: For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing graph data.
Author: Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Sysbiolab and Collaborators [fnd],
Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between PathwaySpace versions 1.0.2 dated 2025-07-27 and 1.1.0 dated 2025-11-06
PathwaySpace-1.0.2/PathwaySpace/vignettes/figures/fig10.png |only PathwaySpace-1.0.2/PathwaySpace/vignettes/figures/fig11.png |only PathwaySpace-1.0.2/PathwaySpace/vignettes/figures/fig12.png |only PathwaySpace-1.0.2/PathwaySpace/vignettes/figures/fig13.png |only PathwaySpace-1.0.2/PathwaySpace/vignettes/figures/fig9.png |only PathwaySpace-1.1.0/PathwaySpace/DESCRIPTION | 28 PathwaySpace-1.1.0/PathwaySpace/MD5 | 88 - PathwaySpace-1.1.0/PathwaySpace/NAMESPACE | 6 PathwaySpace-1.1.0/PathwaySpace/R/pspaceChecks.R | 235 +-- PathwaySpace-1.1.0/PathwaySpace/R/pspaceClasses.R | 4 PathwaySpace-1.1.0/PathwaySpace/R/pspaceDecay.R | 616 +++++++--- PathwaySpace-1.1.0/PathwaySpace/R/pspaceGenerics.R | 8 PathwaySpace-1.1.0/PathwaySpace/R/pspaceMethods.R | 300 ++-- PathwaySpace-1.1.0/PathwaySpace/R/pspaceMisc.R | 13 PathwaySpace-1.1.0/PathwaySpace/R/pspacePlots.R | 108 - PathwaySpace-1.1.0/PathwaySpace/R/pspaceSupplements.R | 590 ++++++--- PathwaySpace-1.1.0/PathwaySpace/R/pspaceWatershed.R | 8 PathwaySpace-1.1.0/PathwaySpace/build/partial.rdb |binary PathwaySpace-1.1.0/PathwaySpace/build/vignette.rds |binary PathwaySpace-1.1.0/PathwaySpace/inst/doc/PathwaySpace.R | 121 - PathwaySpace-1.1.0/PathwaySpace/inst/doc/PathwaySpace.Rmd | 340 +---- PathwaySpace-1.1.0/PathwaySpace/inst/doc/PathwaySpace.html | 462 ++----- PathwaySpace-1.1.0/PathwaySpace/man/PathwaySpace-class.Rd | 2 PathwaySpace-1.1.0/PathwaySpace/man/PathwaySpace-package.Rd | 1 PathwaySpace-1.1.0/PathwaySpace/man/buildPathwaySpace.Rd | 16 PathwaySpace-1.1.0/PathwaySpace/man/circularProjection-methods.Rd | 52 PathwaySpace-1.1.0/PathwaySpace/man/expDecay.Rd | 66 - PathwaySpace-1.1.0/PathwaySpace/man/getPathwaySpace-methods.Rd | 2 PathwaySpace-1.1.0/PathwaySpace/man/linearDecay.Rd | 66 - PathwaySpace-1.1.0/PathwaySpace/man/plotPathwaySpace-methods.Rd | 6 PathwaySpace-1.1.0/PathwaySpace/man/polarDecay.Rd |only PathwaySpace-1.1.0/PathwaySpace/man/polarProjection-methods.Rd | 77 - PathwaySpace-1.1.0/PathwaySpace/man/signalAggregation.Rd | 13 PathwaySpace-1.1.0/PathwaySpace/man/signalDecay.Rd | 32 PathwaySpace-1.1.0/PathwaySpace/man/silhouetteMapping-methods.Rd | 24 PathwaySpace-1.1.0/PathwaySpace/man/summitMapping-methods.Rd | 4 PathwaySpace-1.1.0/PathwaySpace/man/summitWatershed.Rd | 2 PathwaySpace-1.1.0/PathwaySpace/man/vertexSignal-accessors.Rd | 6 PathwaySpace-1.1.0/PathwaySpace/man/weibullDecay.Rd | 76 - PathwaySpace-1.1.0/PathwaySpace/vignettes/PathwaySpace.Rmd | 340 +---- PathwaySpace-1.1.0/PathwaySpace/vignettes/bibliography.bib | 21 PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig1.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig3.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig4.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig5.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig6.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig7.png |binary PathwaySpace-1.1.0/PathwaySpace/vignettes/figures/fig8.png |binary 48 files changed, 1848 insertions(+), 1885 deletions(-)
Title: Analyze Mathematical Models of Healthcare Facility Transmission
Description: Calculate useful quantities for a user-defined differential equation
model of infectious disease transmission among individuals in a healthcare
facility. Input rates of transition between states of individuals with and
without the disease-causing organism, distributions of states at facility
admission, relative infectivity of transmissible states, and the facility length
of stay distribution. Calculate the model equilibrium and the basic facility
reproduction number, as described in Toth et al. (2025)
<doi:10.1371/journal.pcbi.1013577>.
Author: Damon Toth [aut, cre, cph] ,
Centers for Disease Control and Prevention [fnd]
Maintainer: Damon Toth <damon.toth@hsc.utah.edu>
Diff between facilityepimath versions 0.1.0 dated 2025-03-07 and 0.2.1 dated 2025-11-06
facilityepimath-0.1.0/facilityepimath/inst/figure1results.R |only facilityepimath-0.1.0/facilityepimath/inst/figure2results.R |only facilityepimath-0.1.0/facilityepimath/inst/table3and4results.R |only facilityepimath-0.2.1/facilityepimath/DESCRIPTION | 16 +-- facilityepimath-0.2.1/facilityepimath/MD5 | 21 ++- facilityepimath-0.2.1/facilityepimath/NEWS.md | 10 + facilityepimath-0.2.1/facilityepimath/README.md | 53 +++++----- facilityepimath-0.2.1/facilityepimath/build/vignette.rds |binary facilityepimath-0.2.1/facilityepimath/inst/Toth2025figure1.R |only facilityepimath-0.2.1/facilityepimath/inst/Toth2025figure2.R |only facilityepimath-0.2.1/facilityepimath/inst/Toth2025figure3.R |only facilityepimath-0.2.1/facilityepimath/inst/Toth2025table3and4.R |only facilityepimath-0.2.1/facilityepimath/inst/doc/equilibrium-and-R0.Rmd | 6 - facilityepimath-0.2.1/facilityepimath/inst/doc/equilibrium-and-R0.html | 15 +- facilityepimath-0.2.1/facilityepimath/vignettes/equilibrium-and-R0.Rmd | 6 - 15 files changed, 73 insertions(+), 54 deletions(-)
More information about facilityepimath at CRAN
Permanent link
Title: Functions to Scrape Rugby Data
Description: Provides a set of functions to scrape and analyze rugby data.
Supports competitions including the National Rugby League, New South Wales Cup,
Queensland Cup, Super League, and various representative and women's competitions.
Includes functions to fetch player statistics, match results, ladders, venues, and coaching data.
Designed to assist analysts, fans, and researchers in exploring historical and current rugby league data.
See Woods et al. (2017) <doi:10.1123/ijspp.2016-0187> for an example of rugby league performance analysis methodology.
Author: Daniel Tomaro [aut, cre]
Maintainer: Daniel Tomaro <danieltomaro@icloud.com>
Diff between nrlR versions 0.1.1 dated 2025-09-01 and 0.1.2 dated 2025-11-06
DESCRIPTION | 8 ++++-- MD5 | 6 ++--- NEWS.md | 66 ++++++++++++++++++++++++------------------------------- R/fetch_lineup.R | 56 +++++++++++++++++++++++++--------------------- 4 files changed, 67 insertions(+), 69 deletions(-)
Title: Rapid Manipulation of the Variant Call Format (VCF)
Description: The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
Author: Zilong Li [aut, cre] ,
Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and
Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas and Davies,
Robert M [cph]
Maintainer: Zilong Li <zilong.dk@gmail.com>
Diff between vcfppR versions 0.8.1 dated 2025-08-25 and 0.8.2 dated 2025-11-06
vcfppR-0.8.1/vcfppR/src/htslib-1.21/htslib-uninstalled.pc |only vcfppR-0.8.1/vcfppR/src/htslib-1.21/htslib_static.mk |only vcfppR-0.8.2/vcfppR/DESCRIPTION | 6 vcfppR-0.8.2/vcfppR/MD5 | 44 + vcfppR-0.8.2/vcfppR/NAMESPACE | 1 vcfppR-0.8.2/vcfppR/NEWS.md | 6 vcfppR-0.8.2/vcfppR/R/vcf-compare.R | 157 +++++- vcfppR-0.8.2/vcfppR/R/vcf-plot.R | 49 +- vcfppR-0.8.2/vcfppR/R/vcf-tables.R | 95 ++++ vcfppR-0.8.2/vcfppR/README.md | 35 + vcfppR-0.8.2/vcfppR/build/vignette.rds |binary vcfppR-0.8.2/vcfppR/inst/doc/concordance-of-two-vcf-files.html | 226 +++++----- vcfppR-0.8.2/vcfppR/inst/extdata/imputed.gt.vcf.gz.tbi |only vcfppR-0.8.2/vcfppR/inst/extdata/platinum.sv.vcf.gz |only vcfppR-0.8.2/vcfppR/inst/extdata/platinum.sv.vcf.gz.tbi |only vcfppR-0.8.2/vcfppR/inst/extdata/svupp.call.vcf.gz |only vcfppR-0.8.2/vcfppR/inst/extdata/svupp.call.vcf.gz.tbi |only vcfppR-0.8.2/vcfppR/man/figures/README-gtgq-1.png |only vcfppR-0.8.2/vcfppR/man/subset.vcftable.Rd |only vcfppR-0.8.2/vcfppR/man/vcfcomp.Rd | 62 +- vcfppR-0.8.2/vcfppR/man/vcfplot.Rd | 11 vcfppR-0.8.2/vcfppR/src/htslib-1.21/config.mk | 24 - vcfppR-0.8.2/vcfppR/src/htslib-1.21/config.status | 93 +--- vcfppR-0.8.2/vcfppR/src/htslib-1.21/htslib.pc.tmp | 8 vcfppR-0.8.2/vcfppR/tests/testthat/test-vcf-comp.R | 209 +++++++++ vcfppR-0.8.2/vcfppR/tests/testthat/test-vcf-errors.R |only vcfppR-0.8.2/vcfppR/tests/testthat/test-vcf-plot.R |only vcfppR-0.8.2/vcfppR/tests/testthat/test-vcf-subset.R |only vcfppR-0.8.2/vcfppR/tests/testthat/test-vcf-table.R | 222 +++++++++ 29 files changed, 1003 insertions(+), 245 deletions(-)
Title: Estimating Hidden Population Size using Respondent Driven
Sampling Data
Description: Estimate the size of a networked population based on
respondent-driven sampling data. The package is part of the "RDS Analyst"
suite of packages for the analysis of respondent-driven sampling data.
See Handcock, Gile and Mar (2014) <doi:10.1214/14-EJS923>,
Handcock, Gile and Mar (2015) <doi:10.1111/biom.12255>,
Kim and Handcock (2021) <doi:10.1093/jssam/smz055>, and
McLaughlin, et. al. (2023) <doi:10.1214/23-AOAS1807>.
Author: Mark S. Handcock [aut, cre, cph] ,
Krista J. Gile [aut, cph],
Brian Kim [ctb],
Katherine R. McLaughlin [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between sspse versions 1.1.0-3 dated 2025-11-04 and 1.1.0-4 dated 2025-11-06
DESCRIPTION | 8 +++---- MD5 | 20 +++++++++---------- R/impute.visibility.R | 8 +++++-- R/plot.sspse.R | 5 ++-- R/poscmpwp.R | 1 R/posteriorsize.R | 48 ++++++++++++++++++++++++++++------------------- build/partial.rdb |binary man/impute.visibility.Rd | 6 +++++ man/posize_warning.Rd | 14 ------------- man/posteriorsize.Rd | 10 ++++----- src/posteriorcmpwpvis.c | 21 +++++++++++++++----- 11 files changed, 81 insertions(+), 60 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.1.1 dated 2025-10-27 and 1.3.0 dated 2025-11-06
DESCRIPTION | 12 ++-- MD5 | 26 ++++----- R/SEQopts.R | 9 ++- R/class_definitions.R | 4 + R/class_setters.R | 4 + R/internal_covariates.R | 4 + R/internal_hazard.R | 9 ++- R/internal_survival.R | 20 +++++-- build/vignette.rds |binary man/SEQopts.Rd | 6 ++ tests/testthat/test_coefficients.R | 97 +++++++++++++++++-------------------- tests/testthat/test_covariates.R | 15 ++--- tests/testthat/test_misc.R | 8 +++ tests/testthat/test_multinomial.R | 50 ++++++++----------- 14 files changed, 147 insertions(+), 117 deletions(-)
Title: Post-Estimation Functions for Generalized Linear Mixed Models
Description: Several functions for working with mixed effects regression models for limited dependent variables. The functions facilitate post-estimation of model predictions or margins, and comparisons between model predictions for assessing or probing moderation. Additional helper functions facilitate model comparisons and implements simulation-based inference for model predictions of alternative-specific outcome models. See also, Melamed and Doan (2024, ISBN: 978-1032509518).
Author: David Melamed [aut, cre]
Maintainer: David Melamed <dmmelamed@gmail.com>
This is a re-admission after prior archival of version 1.2.2 dated 2024-09-04
Diff between catregs versions 1.2.2 dated 2024-09-04 and 1.2.4 dated 2025-11-06
DESCRIPTION | 9 +++++---- MD5 | 32 ++++++++++++++++---------------- R/functions.R | 8 ++++---- build/vignette.rds |binary inst/doc/compare.margins.R | 8 ++++++-- inst/doc/compare.margins.Rmd | 8 ++++++-- inst/doc/compare.margins.html | 23 +++++++++++------------ inst/doc/count.fit.html | 5 +++-- inst/doc/daign.html | 5 +++-- inst/doc/first.diff.fitted.html | 5 +++-- inst/doc/list.coef.html | 5 +++-- inst/doc/margins.dat.clogit.html | 11 ++++++----- inst/doc/margins.dat.html | 5 +++-- inst/doc/margins.des.html | 5 +++-- inst/doc/second.diff.fitted.html | 5 +++-- man/compare.margins.Rd | 11 +++++++---- vignettes/compare.margins.Rmd | 8 ++++++-- 17 files changed, 88 insertions(+), 65 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-01 0.5.0
2022-10-03 0.4.1
2022-08-29 0.4.0
2022-08-20 0.3.3
2021-09-05 0.3.2
2021-05-21 0.3.1
2021-04-21 0.3.0
Title: Build Species Distribution Modeling using 'caret'
Description: Use machine learning algorithms and advanced geographic information system tools to
build Species Distribution Modeling in a extensible and modern fashion.
Author: Dayani Bailly [aut] ,
Edivando Couto [aut] ,
Jose Hilario Delconte Ferreira [aut] ,
Marcos R. Lima [aut] ,
Reginaldo Re [aut] ,
Valeria Batista [aut] ,
Luiz Fernando Esser [aut, cre, cph]
Maintainer: Luiz Fernando Esser <luizesser@gmail.com>
Diff between caretSDM versions 1.1.4 dated 2025-08-29 and 1.2.3 dated 2025-11-06
DESCRIPTION | 17 MD5 | 67 - NAMESPACE | 16 NEWS.md | 21 R/add_predictors.R | 3 R/add_scenarios.R | 76 + R/change_sdm.r |only R/correlate_sdm.r |only R/gcms_ensembles.R | 5 R/generated-globals.R | 2 R/mahal.dist.R | 97 +- R/maxent.R | 300 +++++-- R/plot.R | 102 +- R/predict_sdm.R | 2 R/pseudoabsences.R | 147 +-- R/sdm_area.R | 63 - R/summary_sdm.R | 99 +- R/tidyverse.R | 8 R/train_sdm.R | 92 +- R/tuneGrid_sdm.r |only R/use_mem.R | 2 man/correlate_sdm.Rd |only man/gcms_ensembles.Rd | 2 man/plot_occurrences.Rd | 5 man/prediction_change_sdm.Rd |only man/pseudoabsences.Rd | 18 man/train_sdm.Rd | 7 man/tuneGrid_sdm.Rd |only man/use_mem.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/predict_sdm.md | 234 +++-- tests/testthat/_snaps/sdm_area.md | 2 tests/testthat/_snaps/train_sdm.md | 1372 ++++------------------------------- tests/testthat/test-add_predictors.R | 2 tests/testthat/test-add_scenarios.R | 51 - tests/testthat/test-data_clean.R | 3 tests/testthat/test-plot.R | 10 tests/testthat/test-train_sdm.R | 45 - 38 files changed, 1110 insertions(+), 1762 deletions(-)
Title: Double Machine Learning for Static Panel Models with Fixed
Effects
Description: The 'xtdml' package implements partially linear panel regression (PLPR) models with high-dimensional confounding variables and an exogenous treatment variable within the double machine learning framework. The package is used to estimate the structural parameter (treatment effect) in static panel data models with fixed effects using the approaches established in Clarke and Polselli (2025) <doi:10.1093/ectj/utaf011>. 'xtdml' is built on the object-oriented package 'DoubleML' (Bach et al., 2024) <doi:10.18637/jss.v108.i03> using the 'mlr3' ecosystem.
Author: Annalivia Polselli [aut, cre]
Maintainer: Annalivia Polselli <apolselli.econ@gmail.com>
Diff between xtdml versions 0.1.6 dated 2025-10-08 and 0.1.8 dated 2025-11-06
xtdml-0.1.6/xtdml/README.md |only xtdml-0.1.8/xtdml/DESCRIPTION | 18 xtdml-0.1.8/xtdml/MD5 | 27 xtdml-0.1.8/xtdml/NAMESPACE | 1 xtdml-0.1.8/xtdml/R/dataset.R | 4 xtdml-0.1.8/xtdml/R/helper.R | 907 +++++++++----------- xtdml-0.1.8/xtdml/R/xtdml_data.R | 164 ++- xtdml-0.1.8/xtdml/R/xtdml_main.R | 145 +-- xtdml-0.1.8/xtdml/R/xtdml_plr.R | 127 -- xtdml-0.1.8/xtdml/R/zzz.R | 38 xtdml-0.1.8/xtdml/man/make_plpr_data.Rd | 4 xtdml-0.1.8/xtdml/man/xtdml.Rd | 120 +- xtdml-0.1.8/xtdml/man/xtdml_data.Rd | 16 xtdml-0.1.8/xtdml/man/xtdml_data_from_data_frame.Rd | 17 xtdml-0.1.8/xtdml/man/xtdml_plr.Rd | 166 --- 15 files changed, 869 insertions(+), 885 deletions(-)
Title: Reference Interval Estimation using Real-World Data
Description: Indirect method for the estimation of reference intervals (RIs)
using Real-World Data ('RWD') and methods for comparing and verifying RIs.
Estimates RIs by applying advanced statistical methods to routine
diagnostic test measurements, which include both pathological and
non-pathological samples, to model the distribution of non-pathological
samples. This distribution is then used to derive reference intervals
and support RI verification, i.e., deciding if a specific RI is suitable
for the local population. The package also provides functions for
printing and plotting algorithm results. See ?refineR for a detailed
description of features. Version 1.0 of the algorithm is described in
'Ammer et al. (2021)' <doi:10.1038/s41598-021-95301-2>. Additional
guidance is in 'Ammer et al. (2023)' <doi:10.1093/jalm/jfac101>. The
verification method is described in 'Beck et al. (2025)'
<doi:10.1515/cclm-2025-0728>.
Author: Matthias Beck [aut, cre] ,
Tatjana Ammer [aut] ,
Christopher M Rank [aut],
Andre Schuetzenmeister [aut]
Maintainer: Matthias Beck <matthias.beck.mb1@roche.com>
Diff between refineR versions 1.6.2 dated 2024-08-21 and 2.0.0 dated 2025-11-06
DESCRIPTION | 53 + MD5 | 95 ++- NAMESPACE | 4 NEWS.md | 13 R/plot.R | 850 ++++++++++++++++---------------- R/utils.R | 768 +++++++++++++++++----------- R/utilsRIVerification.R |only build/partial.rdb |only build/vignette.rds |binary inst/doc/refineR_package.R | 4 inst/doc/refineR_package.Rmd | 17 inst/doc/refineR_package.html | 116 ++-- inst/doc/verification.R |only inst/doc/verification.html |only inst/doc/verification.rmd |only man/BoxCox.Rd | 44 - man/addGrid.Rd | 54 +- man/alignVec.Rd |only man/as.rgb.Rd | 74 +- man/ashDensity.Rd | 60 +- man/calculateCostHist.Rd | 80 +-- man/cdfTruncatedBoxCox.Rd |only man/checkInvalidArgs.Rd |only man/createVerificationTab.Rd |only man/defineSearchRegions.Rd | 56 +- man/estimateAB.Rd | 42 - man/findMainPeak.Rd | 58 +- man/findPeaksAndValleys.Rd | 40 - man/findRI.Rd | 142 ++--- man/findRoundingBase.Rd | 40 - man/generateHistData.Rd | 48 - man/getEquivalenceLimits.Rd |only man/getRI.Rd | 79 +- man/getRIMargins.Rd |only man/getRISimilarity.Rd |only man/getRIfromRWDRI.Rd |only man/getSumForPArea.Rd | 86 +-- man/getVerificationArgs.Rd |only man/invBoxCox.Rd | 44 - man/optimizeGrid.Rd | 54 +- man/perc_ci_asymptotic.Rd |only man/plot.RWDRI.Rd | 152 +++-- man/plotRIVerification.Rd |only man/pnormApprox.Rd | 56 +- man/print.RWDRI.Rd | 85 +-- man/printDataFractionWithinOutsideRI.Rd |only man/printSimilarityTable.Rd |only man/printTableHeader.Rd |only man/printTableRows.Rd |only man/printVerificationTable.Rd |only man/refineR-Package.Rd | 24 man/testParam.Rd | 88 +-- man/testcase1.Rd | 34 - man/testcase2.Rd | 34 - man/testcase3.Rd | 34 - man/testcase4.Rd | 34 - man/testcase5.Rd | 34 - man/verifyRI.Rd |only vignettes/refineR_package.Rmd | 17 vignettes/verification.rmd |only 60 files changed, 1914 insertions(+), 1599 deletions(-)
Title: A Fast Permutation-Based Split-Half Reliability Algorithm
Description: Accurately estimates the reliability of cognitive tasks using a fast and flexible permutation-based split-half reliability algorithm that supports stratified splitting while maintaining equal split sizes. See Kahveci, Bathke, and Blechert (2025) <doi:10.3758/s13423-024-02597-y> for details.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@plus.ac.at>
Diff between rapidsplithalf versions 0.4 dated 2025-01-28 and 0.5 dated 2025-11-06
DESCRIPTION | 13 +- MD5 | 36 ++--- NAMESPACE | 13 -- R/data.R | 4 R/helpers.R | 99 ++++++++++------ R/rapidsplit.R | 235 ++++++++++++++++++++------------------ R/spearmanbrown.R | 2 R/zzz.R | 11 + inst/doc/rapidsplithalf.Rmd | 4 inst/doc/rapidsplithalf.html | 36 ++--- man/figures/README-iatrel-1.png |binary man/figures/README-plotter-1.png |binary man/figures/README-plotter2-1.png |binary man/foodAAT.Rd | 2 man/raceIAT.Rd | 2 man/rapidsplit.Rd | 41 +++--- man/rapidsplithalf.Rd | 4 src/corByColumns.cpp | 10 + vignettes/rapidsplithalf.Rmd | 4 19 files changed, 284 insertions(+), 232 deletions(-)
More information about rapidsplithalf at CRAN
Permanent link
Title: Statistical Methods for Survival Data with Dependent Censoring
Description: Several statistical methods for analyzing survival data under various forms of dependent
censoring are implemented in the package. In addition to accounting for dependent censoring, it
offers tools to adjust for unmeasured confounding factors. The implemented approaches allow
users to estimate the dependency between survival time and dependent censoring time, based
solely on observed survival data. For more details on the methods, refer to Deresa and Van
Keilegom (2021) <doi:10.1093/biomet/asaa095>, Czado and Van Keilegom (2023)
<doi:10.1093/biomet/asac067>, Crommen et al. (2024) <doi:10.1007/s11749-023-00903-9>,
Deresa and Van Keilegom (2024) <doi:10.1080/01621459.2022.2161387>, Willems et al. (2025)
<doi:10.48550/arXiv.2403.11860>, Ding and Van Keilegom (2025) and D'Haen et al. (2025)
<doi:10.1007/s10985-025-09647-0>.
Author: Ilias Willems [aut] ,
Gilles Crommen [aut] ,
Negera Wakgari Deresa [aut, cre] ,
Jie Ding [aut] ,
Claudia Czado [aut] ,
Myrthe D'Haen [aut] ,
Ingrid Van Keilegom [aut]
Maintainer: Negera Wakgari Deresa <negera.deresa@gmail.com>
Diff between depCensoring versions 0.1.7 dated 2025-03-11 and 0.1.8 dated 2025-11-06
depCensoring-0.1.7/depCensoring/man/A_step.Rd |only depCensoring-0.1.7/depCensoring/man/Bspline.unit.interval.Rd |only depCensoring-0.1.7/depCensoring/man/CompC.Rd |only depCensoring-0.1.7/depCensoring/man/D.hat.Rd |only depCensoring-0.1.7/depCensoring/man/DYJtrans.Rd |only depCensoring-0.1.7/depCensoring/man/EAM.Rd |only depCensoring-0.1.7/depCensoring/man/EAM.converged.Rd |only depCensoring-0.1.7/depCensoring/man/EI.Rd |only depCensoring-0.1.7/depCensoring/man/E_step.Rd |only depCensoring-0.1.7/depCensoring/man/G.box.Rd |only depCensoring-0.1.7/depCensoring/man/G.cd.Rd |only depCensoring-0.1.7/depCensoring/man/G.cd.mc.Rd |only depCensoring-0.1.7/depCensoring/man/G.hat.Rd |only depCensoring-0.1.7/depCensoring/man/G.spline.Rd |only depCensoring-0.1.7/depCensoring/man/IYJtrans.Rd |only depCensoring-0.1.7/depCensoring/man/Lambda_AFT_ll.Rd |only depCensoring-0.1.7/depCensoring/man/Lambda_Cox_wb.Rd |only depCensoring-0.1.7/depCensoring/man/Lambda_inverse_AFT_ll.Rd |only depCensoring-0.1.7/depCensoring/man/Lambda_inverse_Cox_wb.Rd |only depCensoring-0.1.7/depCensoring/man/LikCopInd.Rd |only depCensoring-0.1.7/depCensoring/man/LikF.cmprsk.Rd |only depCensoring-0.1.7/depCensoring/man/LikGamma1.Rd |only depCensoring-0.1.7/depCensoring/man/LikGamma2.Rd |only depCensoring-0.1.7/depCensoring/man/LikI.bis.Rd |only depCensoring-0.1.7/depCensoring/man/LikI.cmprsk.Cholesky.Rd |only depCensoring-0.1.7/depCensoring/man/LikI.cmprsk.Rd |only depCensoring-0.1.7/depCensoring/man/Longfun.Rd |only depCensoring-0.1.7/depCensoring/man/MSpoint.Rd |only depCensoring-0.1.7/depCensoring/man/M_step.Rd |only depCensoring-0.1.7/depCensoring/man/Omega.hat.Rd |only depCensoring-0.1.7/depCensoring/man/PseudoL.Rd |only depCensoring-0.1.7/depCensoring/man/S.func.Rd |only depCensoring-0.1.7/depCensoring/man/Sigma.hat.Rd |only depCensoring-0.1.7/depCensoring/man/YJtrans.Rd |only depCensoring-0.1.7/depCensoring/man/boot.fun.Rd |only depCensoring-0.1.7/depCensoring/man/boot.funI.Rd |only depCensoring-0.1.7/depCensoring/man/cbMV.Rd |only depCensoring-0.1.7/depCensoring/man/check.args.pisurv.Rd |only depCensoring-0.1.7/depCensoring/man/chol2par.Rd |only depCensoring-0.1.7/depCensoring/man/chol2par.elem.Rd |only depCensoring-0.1.7/depCensoring/man/clear.plt.wdw.Rd |only depCensoring-0.1.7/depCensoring/man/cr.lik.Rd |only depCensoring-0.1.7/depCensoring/man/dD.hat.Rd |only depCensoring-0.1.7/depCensoring/man/dLambda_AFT_ll.Rd |only depCensoring-0.1.7/depCensoring/man/dLambda_Cox_wb.Rd |only depCensoring-0.1.7/depCensoring/man/dat.sim.reg.comp.risks.Rd |only depCensoring-0.1.7/depCensoring/man/dchol2par.Rd |only depCensoring-0.1.7/depCensoring/man/dchol2par.elem.Rd |only depCensoring-0.1.7/depCensoring/man/dm.bar.Rd |only depCensoring-0.1.7/depCensoring/man/do.optimization.Mstep.Rd |only depCensoring-0.1.7/depCensoring/man/draw.sv.init.Rd |only depCensoring-0.1.7/depCensoring/man/estimate.cf.Rd |only depCensoring-0.1.7/depCensoring/man/feasible_point_search.Rd |only depCensoring-0.1.7/depCensoring/man/get.anchor.points.Rd |only depCensoring-0.1.7/depCensoring/man/get.cond.moment.evals.Rd |only depCensoring-0.1.7/depCensoring/man/get.cvLLn.Rd |only depCensoring-0.1.7/depCensoring/man/get.deriv.mom.func.Rd |only depCensoring-0.1.7/depCensoring/man/get.dmi.tens.Rd |only depCensoring-0.1.7/depCensoring/man/get.extra.Estep.points.Rd |only depCensoring-0.1.7/depCensoring/man/get.instrumental.function.evals.Rd |only depCensoring-0.1.7/depCensoring/man/get.mi.mat.Rd |only depCensoring-0.1.7/depCensoring/man/get.next.point.Rd |only depCensoring-0.1.7/depCensoring/man/get.starting.values.Rd |only depCensoring-0.1.7/depCensoring/man/get.test.statistic.Rd |only depCensoring-0.1.7/depCensoring/man/gridSearch.Rd |only depCensoring-0.1.7/depCensoring/man/gs.algo.bidir.Rd |only depCensoring-0.1.7/depCensoring/man/gs.binary.Rd |only depCensoring-0.1.7/depCensoring/man/gs.interpolation.Rd |only depCensoring-0.1.7/depCensoring/man/gs.regular.Rd |only depCensoring-0.1.7/depCensoring/man/insert.row.Rd |only depCensoring-0.1.7/depCensoring/man/lf.delta.beta1.Rd |only depCensoring-0.1.7/depCensoring/man/lf.ts.Rd |only depCensoring-0.1.7/depCensoring/man/likF.cmprsk.Cholesky.Rd |only depCensoring-0.1.7/depCensoring/man/likIFG.cmprsk.Cholesky.Rd |only depCensoring-0.1.7/depCensoring/man/log_transform.Rd |only depCensoring-0.1.7/depCensoring/man/m.bar.Rd |only depCensoring-0.1.7/depCensoring/man/normalize.covariates.Rd |only depCensoring-0.1.7/depCensoring/man/normalize.covariates2.Rd |only depCensoring-0.1.7/depCensoring/man/plot_addpte.Rd |only depCensoring-0.1.7/depCensoring/man/plot_addpte.eval.Rd |only depCensoring-0.1.7/depCensoring/man/plot_base.Rd |only depCensoring-0.1.7/depCensoring/man/power_transform.Rd |only depCensoring-0.1.7/depCensoring/man/set.EAM.hyperparameters.Rd |only depCensoring-0.1.7/depCensoring/man/set.GS.hyperparameters.Rd |only depCensoring-0.1.7/depCensoring/man/set.hyperparameters.Rd |only depCensoring-0.1.7/depCensoring/man/test.point_Bei.Rd |only depCensoring-0.1.7/depCensoring/man/test.point_Bei_MT.Rd |only depCensoring-0.1.7/depCensoring/man/uniformize.data.Rd |only depCensoring-0.1.7/depCensoring/man/variance.cmprsk.Rd |only depCensoring-0.1.8/depCensoring/DESCRIPTION | 38 - depCensoring-0.1.8/depCensoring/MD5 | 122 --- depCensoring-0.1.8/depCensoring/NAMESPACE | 4 depCensoring-0.1.8/depCensoring/R/BoundingCovariateEffects.R | 349 +++++++--- depCensoring-0.1.8/depCensoring/R/CopulaBasedCoxPH_pseudoLikelihoodFunctions.R | 27 depCensoring-0.1.8/depCensoring/R/CopulaCoxPHmodel_BootstrapMethods.R | 13 depCensoring-0.1.8/depCensoring/R/ParamTransfoCompRisks.R | 111 +-- depCensoring-0.1.8/depCensoring/R/QRdepcens.R |only depCensoring-0.1.8/depCensoring/R/SemiParametricCopulawithoutCovariates.R | 8 depCensoring-0.1.8/depCensoring/R/data.R |only depCensoring-0.1.8/depCensoring/R/dataGeneratingFunction.R | 2 depCensoring-0.1.8/depCensoring/R/preconditionChecks.R | 90 +- depCensoring-0.1.8/depCensoring/R/yeo-johnsonTransformation.R | 106 +-- depCensoring-0.1.8/depCensoring/data |only depCensoring-0.1.8/depCensoring/man/Distance.Rd | 7 depCensoring-0.1.8/depCensoring/man/QRdepCens.Rd |only depCensoring-0.1.8/depCensoring/man/SurvDC.Rd | 8 depCensoring-0.1.8/depCensoring/man/estimate.cmprsk.Rd | 6 depCensoring-0.1.8/depCensoring/man/liver.Rd |only depCensoring-0.1.8/depCensoring/man/pi.surv.Rd | 99 ++ 109 files changed, 599 insertions(+), 391 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play and spatial shooting data are also available for the Spanish league. Methods for analysis include a
population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls, offensive rebounds and different types of shooting charts.
Please see Vinue [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.4 dated 2025-10-22 and 1.4.1 dated 2025-11-06
BAwiR-1.4.1/BAwiR/DESCRIPTION | 13 +- BAwiR-1.4.1/BAwiR/MD5 | 66 ++++++----- BAwiR-1.4.1/BAwiR/NAMESPACE | 14 ++ BAwiR-1.4.1/BAwiR/NEWS | 4 BAwiR-1.4.1/BAwiR/R/do_OE.R | 2 BAwiR-1.4.1/BAwiR/R/do_four_factors_df.R | 51 ++++++-- BAwiR-1.4.1/BAwiR/R/do_lineup.R | 5 BAwiR-1.4.1/BAwiR/R/do_possession.R | 22 ++- BAwiR-1.4.1/BAwiR/R/do_prepare_data_or.R | 2 BAwiR-1.4.1/BAwiR/R/do_prepare_data_to.R | 28 +++- BAwiR-1.4.1/BAwiR/R/do_preproc_period.R | 2 BAwiR-1.4.1/BAwiR/R/do_time_out_success.R | 7 - BAwiR-1.4.1/BAwiR/R/do_time_out_success_altern.R |only BAwiR-1.4.1/BAwiR/R/do_usage.R | 102 ++++++++++------- BAwiR-1.4.1/BAwiR/R/do_viz_shots_gradient.R | 22 +++ BAwiR-1.4.1/BAwiR/R/do_viz_shots_scatter.R | 30 ++++- BAwiR-1.4.1/BAwiR/R/get_donut_usage.R |only BAwiR-1.4.1/BAwiR/R/get_donut_usage_action.R |only BAwiR-1.4.1/BAwiR/R/get_roster_age_profile.R |only BAwiR-1.4.1/BAwiR/data/acb_age_profile_data_2526.RData |only BAwiR-1.4.1/BAwiR/data/acb_usage_act_data_2526.RData |only BAwiR-1.4.1/BAwiR/data/acb_usage_data_2526.RData |only BAwiR-1.4.1/BAwiR/inst/doc/BAwiR.R | 11 + BAwiR-1.4.1/BAwiR/inst/doc/BAwiR.Rmd | 11 + BAwiR-1.4.1/BAwiR/inst/doc/BAwiR.html | 87 ++++++++------ BAwiR-1.4.1/BAwiR/inst/doc/BAwiR_pbp.html | 4 BAwiR-1.4.1/BAwiR/inst/doc/BAwiR_sc.html | 4 BAwiR-1.4.1/BAwiR/man/acb_age_profile_data_2526.Rd |only BAwiR-1.4.1/BAwiR/man/acb_usage_act_data_2526.Rd |only BAwiR-1.4.1/BAwiR/man/acb_usage_data_2526.Rd |only BAwiR-1.4.1/BAwiR/man/do_OE.Rd | 2 BAwiR-1.4.1/BAwiR/man/do_four_factors_df.Rd | 12 +- BAwiR-1.4.1/BAwiR/man/do_prepare_data_to.Rd | 2 BAwiR-1.4.1/BAwiR/man/do_time_out_success_altern.Rd |only BAwiR-1.4.1/BAwiR/man/do_viz_shots_gradient.Rd | 4 BAwiR-1.4.1/BAwiR/man/do_viz_shots_scatter.Rd | 8 + BAwiR-1.4.1/BAwiR/man/get_donut_usage.Rd |only BAwiR-1.4.1/BAwiR/man/get_donut_usage_action.Rd |only BAwiR-1.4.1/BAwiR/man/get_roster_age_profile.Rd |only BAwiR-1.4.1/BAwiR/vignettes/BAwiR.Rmd | 11 + BAwiR-1.4/BAwiR/build/partial.rdb |only BAwiR-1.4/BAwiR/man/BAwiR-package.Rd |only 42 files changed, 357 insertions(+), 169 deletions(-)
Title: Nonparametric Bootstrap Test for Regression Monotonicity
Description: Implements nonparametric bootstrap tests for detecting monotonicity
in regression functions from Hall, P. and Heckman, N. (2000) <doi:10.1214/aos/1016120363>
Includes tools for visualizing results using Nadaraya-Watson kernel regression and supports
efficient computation with 'C++'. Tutorials and shiny application demo are
available at <https://www.laylaparast.com/monotonicitytest> and <https://parastlab.shinyapps.io/MonotonicityTest>.
Author: Dylan Huynh [aut, cre]
Maintainer: Dylan Huynh <dylanhuynh@utexas.edu>
Diff between MonotonicityTest versions 1.2 dated 2025-04-24 and 1.3 dated 2025-11-06
MonotonicityTest-1.2/MonotonicityTest/R/main.R |only MonotonicityTest-1.3/MonotonicityTest/DESCRIPTION | 11 MonotonicityTest-1.3/MonotonicityTest/MD5 | 26 +- MonotonicityTest-1.3/MonotonicityTest/NAMESPACE | 5 MonotonicityTest-1.3/MonotonicityTest/R/monotonicity-result.R | 102 ++++++-- MonotonicityTest-1.3/MonotonicityTest/R/monotonicity-test.R |only MonotonicityTest-1.3/MonotonicityTest/R/plots.R |only MonotonicityTest-1.3/MonotonicityTest/R/utils.R |only MonotonicityTest-1.3/MonotonicityTest/README.md | 14 + MonotonicityTest-1.3/MonotonicityTest/man/create_kernel_plot.Rd | 2 MonotonicityTest-1.3/MonotonicityTest/man/monotonicity_test.Rd | 26 -- MonotonicityTest-1.3/MonotonicityTest/src/HallTest.cpp | 119 +++------- MonotonicityTest-1.3/MonotonicityTest/src/RLSState.cpp |only MonotonicityTest-1.3/MonotonicityTest/src/RLSState.h |only MonotonicityTest-1.3/MonotonicityTest/src/RcppExports.cpp | 4 MonotonicityTest-1.3/MonotonicityTest/tests/testthat/Rplots.pdf |binary MonotonicityTest-1.3/MonotonicityTest/tests/testthat/test-main.R | 52 +++- 17 files changed, 212 insertions(+), 149 deletions(-)
More information about MonotonicityTest at CRAN
Permanent link
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.7.1 dated 2025-10-24 and 1.8.0 dated 2025-11-06
DESCRIPTION | 8 +-- MD5 | 28 +++++------ NEWS.md | 5 + R/CallbackAsync.R | 26 ++++++++++ R/ContextAsync.R | 4 - R/OptimInstanceAsync.R | 6 -- R/OptimizerAsync.R | 61 +++++++++++++++++++----- man/CallbackAsync.Rd | 8 +++ man/ContextAsync.Rd | 3 - man/OptimizerAsync.Rd | 38 ++++++++++++++ man/callback_async.Rd | 14 +++++ tests/testthat/helper.R | 8 +-- tests/testthat/test_OptimizerAsynDesignPoints.R | 1 tests/testthat/test_OptimizerAsync.R | 4 - tests/testthat/test_OptimizerBatchLocalSearch.R | 12 ++-- 15 files changed, 173 insertions(+), 53 deletions(-)
Title: Powerful Classes for HTTP Requests and Responses
Description: In order to facilitate parsing of http requests and creating
appropriate responses this package provides two classes to handle a lot of
the housekeeping involved in working with http exchanges. The infrastructure
builds upon the 'rook' specification and is thus well suited to be combined
with 'httpuv' based web servers.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between reqres versions 1.0.0 dated 2025-08-20 and 1.1.0 dated 2025-11-06
DESCRIPTION | 10 MD5 | 33 - NEWS.md | 11 R/aaa.R | 56 ++- R/formatters.R | 65 ++- R/otel.R |only R/parsers.R | 35 + R/problems.R | 62 ++- R/request.R | 645 +++++++++++++++++++++++++++-------- R/response.R | 276 +++++++++++--- man/Request.Rd | 27 + tests/testthat/test-aaa.R | 17 tests/testthat/test-formatters.R | 13 tests/testthat/test-parsers.R | 12 tests/testthat/test-problems.R | 70 ++- tests/testthat/test-request.R | 27 + tests/testthat/test-response.R | 73 +++ tests/testthat/test-session-cookie.R | 36 + 18 files changed, 1141 insertions(+), 327 deletions(-)
Title: Treatment Switching
Description: Implements rank preserving structural failure time model (RPSFTM), iterative parameter estimation (IPE), inverse probability of censoring weights (IPCW), marginal structural model (MSM), simple two-stage estimation (TSEsimp), and improved two-stage estimation with g-estimation (TSEgest) methods for treatment switching in randomized clinical trials.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between trtswitch versions 0.2.0 dated 2025-10-06 and 0.2.1 dated 2025-11-06
DESCRIPTION | 8 MD5 | 150 NEWS.md | 26 R/RcppExports.R | 116 R/ipcw.R | 192 R/ipe.R | 69 R/msm.R | 184 R/rpsftm.R | 88 R/trtswitch-package.R | 13 R/tsegest.R | 287 - R/tsesimp.R | 103 inst/doc/ipcw.R | 8 inst/doc/ipcw.Rmd | 20 inst/doc/ipcw.html | 261 - inst/doc/ipe.R | 2 inst/doc/ipe.Rmd | 2 inst/doc/ipe.html | 4 inst/doc/msm.R | 4 inst/doc/msm.Rmd | 8 inst/doc/msm.html | 76 inst/doc/rpsftm.R | 2 inst/doc/rpsftm.Rmd | 2 inst/doc/rpsftm.html | 4 inst/doc/tsegest.R | 18 inst/doc/tsegest.Rmd | 30 inst/doc/tsegest.html | 89 inst/doc/tsesimp.R | 6 inst/doc/tsesimp.Rmd | 6 inst/doc/tsesimp.html | 166 man/findInterval3.Rd | 8 man/ipcw.Rd | 109 man/ipe.Rd | 58 man/kmdiff.Rd | 4 man/kmest.Rd | 26 man/lrtest.Rd | 26 man/msm.Rd | 111 man/recensor_sim_rpsftm.Rd | 6 man/rmdiff.Rd | 6 man/rmest.Rd | 2 man/rpsftm.Rd | 72 man/survQuantile.Rd | 2 man/trtswitch-package.Rd | 11 man/tsegest.Rd | 175 man/tsegestsim.Rd | 4 man/tsesimp.Rd | 87 man/tssim.Rd | 8 src/RcppExports.cpp | 50 src/ipcw.cpp | 1071 ++-- src/ipe.cpp | 556 +- src/logistic_regression.cpp | 1151 +--- src/logistic_regression.h | 19 src/msm.cpp | 857 +-- src/recensor_sim_rpsftm.cpp | 53 src/rpsftm.cpp | 542 +- src/splines.cpp | 118 src/survival_analysis.cpp | 8012 +++++++++++++------------------ src/survival_analysis.h | 57 src/tsegest.cpp | 1047 ++-- src/tsegestsim.cpp | 33 src/tsesimp.cpp | 554 +- src/tssim.cpp | 8 src/utilities.cpp | 314 - tests/testthat/test-ipe.R | 2 tests/testthat/test-kmest.R | 4 tests/testthat/test-lrtest.R | 9 tests/testthat/test-residuals_liferegr.R | 15 tests/testthat/test-rmdiff.R | 11 tests/testthat/test-rpsftm.R | 10 tests/testthat/test-tsegest.R | 13 tests/testthat/test-tsesimp.R | 55 vignettes/ipcw.Rmd | 20 vignettes/ipe.Rmd | 2 vignettes/msm.Rmd | 8 vignettes/rpsftm.Rmd | 2 vignettes/tsegest.Rmd | 30 vignettes/tsesimp.Rmd | 6 76 files changed, 8376 insertions(+), 8912 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al. (2025) <doi:10.1080/00273171.2025.2473935>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 2.1.1 dated 2025-10-01 and 2.1.2 dated 2025-11-06
DESCRIPTION | 8 MD5 | 22 - R/RcppExports.R | 4 build/partial.rdb |binary data/dataIEA.rda |binary data/dataTOY.rda |binary man/multiLCA.Rd | 736 +++++++++++++++++++++++++------------------------- src/LCAfit.cpp | 19 - src/RcppExports.cpp | 14 src/Utils.cpp | 37 ++ src/Utils.h | 1 src/multilevLC_EM.cpp | 46 +-- 12 files changed, 473 insertions(+), 414 deletions(-)
Title: Tools for Customer Lifetime Value Estimation
Description: A set of state-of-the-art probabilistic modeling approaches to derive estimates of individual customer lifetime values (CLV).
Commonly, probabilistic approaches focus on modelling 3 processes, i.e. individuals' attrition, transaction, and spending process.
Latent customer attrition models, which are also known as "buy-'til-you-die models", model the attrition as well as the transaction process.
They are used to make inferences and predictions about transactional patterns of individual customers such as their future purchase behavior.
Moreover, these models have also been used to predict individuals’ long-term engagement in activities such as playing an online game or
posting to a social media platform. The spending process is usually modelled by a separate probabilistic model. Combining these results yields in
lifetime values estimates for individual customers.
This package includes fast and accurate implementations of various probabilistic models for non-contractual settings
(e.g., gr [...truncated...]
Author: Patrick Bachmann [cre, aut],
Niels Kuebler [aut],
Markus Meierer [aut],
Jeffrey Naef [aut],
E. Shin Oblander [aut],
Patrik Schilter [aut]
Maintainer: Patrick Bachmann <pbachma@ethz.ch>
Diff between CLVTools versions 0.12.0 dated 2025-09-22 and 0.12.1 dated 2025-11-06
DESCRIPTION | 8 MD5 | 30 +- NEWS.md | 7 R/f_generics_clvfittedtransactions.R | 3 R/f_generics_clvfittedtransactionsdyncov.R | 3 R/f_generics_clvfittedtransactionsstaticcov.R | 3 R/f_interface_newcustomer.R | 40 ++- build/vignette.rds |binary inst/doc/CLVTools.R | 154 +++++++------- inst/doc/CLVTools.Rmd | 15 + inst/doc/CLVTools.pdf |binary man/newcustomer.Rd | 36 ++- tests/testthat/helper_s3_fitted_plot.R | 2 tests/testthat/helper_testthat_correctness_transactions.R | 8 tests/testthat/test_correctness_pnbd_dyncov.R | 4 vignettes/CLVTools.Rmd | 15 + 16 files changed, 198 insertions(+), 130 deletions(-)
Title: Post-Process 'ggplot2' Plots with 'TikZ' Code Using Plot
Coordinates
Description: Annotation of 'ggplot2' plots with arbitrary 'TikZ' code, using absolute data or relative plot coordinates.
Author: Oliver Thomas [aut, cre]
Maintainer: Oliver Thomas <ost.dev@posteo.net>
Diff between ggtikz versions 0.1.4 dated 2025-09-12 and 0.1.5 dated 2025-11-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/ggtikzTransform.R | 4 ++-- R/ggtikzUninfinite.R | 4 ++-- inst/doc/examples.pdf |binary tests/testthat/test-coord_utils.R | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Generate Summary Tables for Categorical, Ordinal, and Continuous
Data
Description: Provides functions for tabulating and summarizing
categorical, multiple response, ordinal, and continuous
variables in R data frames. Makes it easy to create clear,
structured summary tables, so you spend less time wrangling
data and more time interpreting it.
Author: Ama Nyame-Mensah [aut, cre]
Maintainer: Ama Nyame-Mensah <ama@anyamemensah.com>
Diff between summarytabl versions 0.2.0 dated 2025-11-05 and 0.2.1 dated 2025-11-06
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Regularized Estimation in Mixed Effects Model
Description: Implementation of an algorithm in two steps to estimate parameters of a model whose latent dynamics are inferred through latent processes, jointly regularized. This package uses 'Monolix' software (<https://monolixsuite.slp-software.com/>), which provide robust statistical method for non-linear mixed effects modeling. 'Monolix' must have been installed prior to use.
Author: Auriane Gabaut [aut, cre],
Ariane Bercu [aut],
Melanie Prague [aut],
Cecile Proust-Lima [aut]
Maintainer: Auriane Gabaut <auriane.gabaut@inria.fr>
Diff between REMixed versions 1.1.0 dated 2025-10-28 and 1.1.1 dated 2025-11-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/doc.pdf |binary vignettes/Vignette___REMixed.pdf |binary 5 files changed, 11 insertions(+), 7 deletions(-)
Title: Rapid Asynchronous and Distributed Computing
Description: Package to tackle large-scale problems asynchronously across
a distributed network. Employing a database centric model, rush
enables workers to communicate tasks and their results over a shared
'Redis' database. Key features include low task overhead, efficient
caching, and robust error handling. The package powers the
asynchronous optimization algorithms in the 'bbotk' and 'mlr3tuning'
packages.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between rush versions 0.4.0 dated 2025-10-08 and 0.4.1 dated 2025-11-06
DESCRIPTION | 6 ++-- MD5 | 10 +++---- NEWS.md | 5 +++ R/Rush.R | 41 +++++++++++++++++++++----------- man/Rush.Rd | 12 +++++++-- tests/testthat/test-Rush.R | 57 +++++++++++++++++++++++++++++++++++++++++++++ 6 files changed, 106 insertions(+), 25 deletions(-)
Title: Simulation and Plots for Fossil and Taxonomy Data
Description: Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic
models of speciation, preservation and sampling.
Author: Rachel Warnock [aut, cph],
Joelle Barido-Sottani [aut, cre, cph],
Walker Pett [aut, cph],
O'Reilly Joseph [aut, cph],
Ugnė Stolz [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>
Diff between FossilSim versions 2.4.2 dated 2025-10-28 and 2.4.3 dated 2025-11-06
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 183 +++++++++---------- R/plot.fbdrange.R | 455 +++++++++++++++++++++++++----------------------- inst/doc/SAtree.html | 36 ++- inst/doc/fossils.html | 4 inst/doc/intro.html | 4 inst/doc/paleotree.html | 4 inst/doc/simfbd.html | 4 inst/doc/taxonomy.html | 4 10 files changed, 379 insertions(+), 339 deletions(-)
Title: Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Description: Import, manipulate and explore results generated by 'Antares', a
powerful open source software developed by RTE (Réseau de Transport d’Électricité) to simulate and study electric power systems
(more information about 'Antares' here : <https://antares-simulator.org/>).
Author: Tatiana Vargas [aut, cre],
Jalal-Edine ZAWAM [aut],
Frederic Breant [ctb],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Victor Perrier [ctb],
Etienne Sanchez [ctb],
Assil Mansouri [ctb],
Clement Berthet [ctb],
Kamel Kemiha [c [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresRead versions 2.9.2 dated 2025-09-23 and 2.9.3 dated 2025-11-06
DESCRIPTION | 9 MD5 | 33 - NAMESPACE | 2 NEWS.md | 21 R/importOutput.R | 94 +-- R/setSimulationPath.R | 309 ++++------ R/setSimulationPathAPI.R | 119 +-- R/utils_api.R | 18 R/zzz.R | 10 inst/doc/antaresRead.html | 4 inst/referential_properties/cluster_properties.csv | 1 inst/variables_selection/ref_thematic_by_version/api_ref_conversion.csv | 2 inst/variables_selection/ref_thematic_by_version/ref_930.csv |only man/setSimulationPath.Rd | 22 man/setTimeoutAPI.Rd | 4 tests/testthat/test-readClusterDesc.R | 90 ++ tests/testthat/test-readInputTS.R | 62 ++ tests/testthat/test-thematic_timming.R | 172 +++++ 18 files changed, 672 insertions(+), 300 deletions(-)
Title: Methods to Analyse Signed Networks
Description: Methods for the analysis of signed networks. This includes
several measures for structural balance as introduced by Cartwright
and Harary (1956) <doi:10.1037/h0046049>, blockmodeling algorithms
from Doreian (2008) <doi:10.1016/j.socnet.2008.03.005>, various
centrality indices, and projections of signed two-mode networks
introduced by Schoch (2020) <doi:10.1080/0022250X.2019.1711376>.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between signnet versions 1.0.5 dated 2025-02-05 and 1.0.6 dated 2025-11-06
DESCRIPTION | 11 - MD5 | 74 +++++----- NEWS.md | 6 R/balance_scores.R | 166 ++++++++++++++--------- R/blockmodel.R | 14 +- R/centrality_indices.R | 6 R/data_tribes.R | 1 R/plot.R | 215 ++++++++++++++++++------------- R/random_graphs.R | 2 R/signed_triangles.R | 2 R/utils.R | 54 +++---- README.md | 15 +- build/vignette.rds |binary inst/doc/blockmodeling.R | 2 inst/doc/blockmodeling.Rmd | 2 inst/doc/blockmodeling.html | 7 - inst/doc/centrality.html | 9 - inst/doc/complex_matrices.R | 2 inst/doc/complex_matrices.Rmd | 2 inst/doc/complex_matrices.html | 7 - inst/doc/signed_2mode.html | 13 + inst/doc/signed_networks.R | 2 inst/doc/signed_networks.Rmd | 2 inst/doc/signed_networks.html | 11 - inst/doc/structural_balance.html | 5 man/balance_score.Rd | 2 man/figures/README-block_example-1.png |binary man/figures/README-general_example-1.png |binary tests/testthat/test-balance_scores.R | 16 +- tests/testthat/test-blockmodel.R | 24 +-- tests/testthat/test-centrality_indices.R | 186 +++++++++++++++++++------- tests/testthat/test-complex_matrices.R | 208 ++++++++++++++++++++++++----- tests/testthat/test-laplace_matrix.R | 51 +++++-- tests/testthat/test-random_graphs.R | 24 +-- tests/testthat/test-signed_triangles.R | 84 ++++++++---- vignettes/blockmodeling.Rmd | 2 vignettes/complex_matrices.Rmd | 2 vignettes/signed_networks.Rmd | 2 38 files changed, 799 insertions(+), 432 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: Random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, Gumbel, binomial, Poisson, Dirac, uniform or circular von Mises parametric families.
Author: Marko Nagode [aut, cre] ,
Branislav Panic [ctb] ,
Jernej Klemenc [ctb] ,
Simon Oman [ctb]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.16.0 dated 2024-07-10 and 2.17.0 dated 2025-11-06
DESCRIPTION | 15 MD5 | 98 NAMESPACE | 6 R/AllClasses.R | 4352 +++++++++++++++++++++--------------------- R/AllGenerics.R | 607 ++--- R/EMMIX.R | 986 ++++----- R/RCLRMIX.R | 2 R/RCLSMIX.R | 4 R/REBMIX.R | 8 R/RNGMIX.R | 2 R/defaults.R | 15 R/zaccessors.R | 66 build/partial.rdb |binary build/vignette.rds |binary demo/rebmix.fault.detection.R | 294 +- demo/rebmix.truck.R | 152 - demo/rebmix.weibullnormal.R | 152 - inst/NEWS.Rd | 669 +++--- inst/doc/rebmix.R | 232 +- inst/doc/rebmix.Rnw | 1834 +++++++++-------- inst/doc/rebmix.pdf |binary man/EM.Control-class.Rd | 169 - man/EMMIX.Rd | 284 +- man/EMMIX.Theta-class.Rd | 170 - man/Histogram-class.Rd | 118 - man/RCLRMIX-class.Rd | 252 +- man/RCLS.chunk-class.Rd | 88 man/RCLSMIX-class.Rd | 158 - man/REBMIX-class.Rd | 270 +- man/REBMIX.boot-class.Rd | 152 - man/RNGMIX-class.Rd | 106 - man/RNGMIX.Theta-class.Rd | 126 - man/bearings.Rd | 198 - man/rebmix-internal.Rd | 781 +++---- man/sensorlessdrive.Rd | 142 - man/steelplates.Rd | 278 +- src/Rrebmix.cpp | 121 - src/Rrebmvnorm.cpp | 119 - src/base.cpp | 52 src/base.h | 43 src/emf.cpp | 2457 +++++++++++++++++++++-- src/emf.h | 62 src/init.c | 12 src/rebmix.cpp | 15 src/rebmixf.cpp | 620 +++++ src/rebmixf.h | 9 src/rebmvnormf.cpp | 11 src/rngmixf.cpp | 2 vignettes/rebmix.Rnw | 1834 +++++++++-------- vignettes/rebmix.bib | 1562 +++++++-------- 50 files changed, 11485 insertions(+), 8220 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-06 1.0.4
2023-06-06 1.0.3
2023-04-02 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-26 0.2.1
2025-10-22 0.2
Title: Factor Copula Models
Description: Inference methods for factor copula models for continuous data in Krupskii and Joe (2013) <doi:10.1016/j.jmva.2013.05.001>, Krupskii and Joe (2015) <doi:10.1016/j.jmva.2014.11.002>, Fan and Joe (2024) <doi:10.1016/j.jmva.2023.105263>, one factor truncated vine models in Joe (2018) <doi:10.1002/cjs.11481>, and Gaussian oblique factor models. Functions for computing tail-weighted dependence measures in Lee, Joe and Krupskii (2018) <doi:10.1080/10485252.2017.1407414> and estimating tail dependence parameter.
Author: Harry Joe [aut],
Pavel Krupskii [aut, cre],
Xinyao Fan [aut],
Allan Macleod [cph],
Robert Gentleman [cph],
Ross Ihaka [cph]
Maintainer: Pavel Krupskii <pavel.krupskiy@unimelb.edu.au>
Diff between FactorCopulaModel versions 0.1.0 dated 2025-10-29 and 0.1.1 dated 2025-11-06
FactorCopulaModel-0.1.0/FactorCopulaModel/man/RVtrunc2cor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bb1_cpar2td.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bb1_tau2eqtd.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bb1_td2cpar.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactor2cor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactor2cor_v2.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactorEstWithProxy.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactorScore.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactor_fa.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactor_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bifactorcop_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/bvn_cpar2tau.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/corDis.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/corvec2mat.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/cparBounds.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/d1factcop.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/factor1trvine_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/frank_beta2cpar.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/frank_rhoS2cpar.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/gauss1f1t.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/gumbel_beta2cpar.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/gumbel_rhoS2cpar.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/latentUpdate1factor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/latentUpdate1factor1.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/latentUpdateBifactor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/ml1factor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/ml1factor_f90.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/ml1factor_v2.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/nestfactorcop_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/oblique_grad_fa.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/oblique_par2load.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/onefactorEstWithProxy.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/onefactorcop_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/pcor2load.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/pfactor_fa.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/pfactor_nllk.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/posDefHessMin.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/posDefHessMinb.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/r1factor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/residDep.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/rhoS.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/rmvn.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/rmvt.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/semiCor.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/semiCorTable.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/zetaDep.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/man/zetaDepC.rd |only FactorCopulaModel-0.1.0/FactorCopulaModel/src/oblique_factor.f90 |only FactorCopulaModel-0.1.1/FactorCopulaModel/DESCRIPTION | 6 FactorCopulaModel-0.1.1/FactorCopulaModel/MD5 | 115 FactorCopulaModel-0.1.1/FactorCopulaModel/R/f90-gaussfactor.R | 9 FactorCopulaModel-0.1.1/FactorCopulaModel/man/RVtrunc2cor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bb1_cpar2td.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bb1_tau2eqtd.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bb1_td2cpar.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactor2cor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactor2cor_v2.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactorEstWithProxy.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactorScore.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactor_fa.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactor_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bifactorcop_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/bvn_cpar2tau.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/corDis.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/corvec2mat.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/cparBounds.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/d1factcop.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/factor1trvine_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/frank_beta2cpar.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/frank_rhoS2cpar.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/gauss1f1t.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/gumbel_beta2cpar.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/gumbel_rhoS2cpar.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/latentUpdate1factor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/latentUpdate1factor1.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/latentUpdateBifactor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/ml1factor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/ml1factor_f90.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/ml1factor_v2.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/mvtBifact.Rd | 3 FactorCopulaModel-0.1.1/FactorCopulaModel/man/nestfactorcop_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/oblique_grad_fa.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/oblique_par2load.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/onefactorEstWithProxy.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/onefactorcop_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/pcor2load.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/pfactor_fa.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/pfactor_nllk.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/posDefHessMin.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/posDefHessMinb.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/r1factor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/residDep.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/rhoS.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/rmvn.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/rmvt.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/semiCor.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/semiCorTable.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/zetaDep.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/man/zetaDepC.Rd |only FactorCopulaModel-0.1.1/FactorCopulaModel/src/2derivs.f90 | 444 +- FactorCopulaModel-0.1.1/FactorCopulaModel/src/bifact_all_fam.f90 | 18 FactorCopulaModel-0.1.1/FactorCopulaModel/src/bifact_latupdate3.f90 | 12 FactorCopulaModel-0.1.1/FactorCopulaModel/src/ccopderiv.f90 | 72 FactorCopulaModel-0.1.1/FactorCopulaModel/src/latupdate2.f90 | 10 FactorCopulaModel-0.1.1/FactorCopulaModel/src/mvtfactwithgrad.f90 | 1830 +++++----- FactorCopulaModel-0.1.1/FactorCopulaModel/src/oblique_factor_2.f90 | 10 106 files changed, 1268 insertions(+), 1261 deletions(-)
More information about FactorCopulaModel at CRAN
Permanent link
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.6.3 dated 2025-09-30 and 1.6.5 dated 2025-11-06
exametrika-1.6.3/exametrika/R/07B_InfiniteRelationalModel.R |only exametrika-1.6.3/exametrika/R/12_OrdinalLatentRank.R |only exametrika-1.6.3/exametrika/R/13_RatedLatentRank.R |only exametrika-1.6.3/exametrika/R/15_NominalBiclustering.R |only exametrika-1.6.3/exametrika/R/16_OrdinalBiclustering.R |only exametrika-1.6.3/exametrika/man/StrLearningGA_BNM.Rd |only exametrika-1.6.3/exametrika/man/StrLearningPBIL_BNM.Rd |only exametrika-1.6.3/exametrika/man/StrLearningPBIL_LDLRA.Rd |only exametrika-1.6.5/exametrika/DESCRIPTION | 8 - exametrika-1.6.5/exametrika/MD5 | 58 ++++++------ exametrika-1.6.5/exametrika/NAMESPACE | 6 - exametrika-1.6.5/exametrika/NEWS.md | 41 ++++++++ exametrika-1.6.5/exametrika/R/00_GridSearch.R | 42 +++++++- exametrika-1.6.5/exametrika/R/05_LCA.R | 10 +- exametrika-1.6.5/exametrika/R/06_LRA.R | 8 + exametrika-1.6.5/exametrika/R/07_Biclustering.R | 10 +- exametrika-1.6.5/exametrika/R/07_IRM.R |only exametrika-1.6.5/exametrika/R/08A_BNM.R | 7 + exametrika-1.6.5/exametrika/R/08C_BNM_GA.R | 34 +++---- exametrika-1.6.5/exametrika/R/09B_LDLRA_GA.R | 26 ++--- exametrika-1.6.5/exametrika/R/09_LDLRA.R | 14 +- exametrika-1.6.5/exametrika/R/10_LDB.R | 6 - exametrika-1.6.5/exametrika/R/12_LRA_ordinal.R |only exametrika-1.6.5/exametrika/R/13_LRA_rated.R |only exametrika-1.6.5/exametrika/R/15_Biclustering_nominal.R |only exametrika-1.6.5/exametrika/R/16_Biclustering_ordinal.R |only exametrika-1.6.5/exametrika/README.md | 42 ++------ exametrika-1.6.5/exametrika/man/BNM.Rd | 8 + exametrika-1.6.5/exametrika/man/BNM_GA.Rd |only exametrika-1.6.5/exametrika/man/BNM_PBIL.Rd |only exametrika-1.6.5/exametrika/man/Biclustering.Rd | 14 ++ exametrika-1.6.5/exametrika/man/IRM.Rd | 2 exametrika-1.6.5/exametrika/man/LCA.Rd | 16 +++ exametrika-1.6.5/exametrika/man/LDB.Rd | 8 + exametrika-1.6.5/exametrika/man/LDLRA.Rd | 8 + exametrika-1.6.5/exametrika/man/LDLRA_PBIL.Rd |only exametrika-1.6.5/exametrika/man/LD_param_est.Rd | 14 ++ exametrika-1.6.5/exametrika/man/LRA.Rd | 9 + 38 files changed, 262 insertions(+), 129 deletions(-)
Title: Empirical Likelihood Ratio Test/Confidence Interval for AUC or
pAUC
Description: Test hypotheses and construct confidence intervals for AUC (area under Receiver
Operating Characteristic curve) and pAUC (partial area under ROC curve), from the
given two samples of test data with disease/healthy subjects. The method used is
based on TWO SAMPLE empirical likelihood and PROFILE empirical likelihood, as described in
<https://www.ms.uky.edu/~mai/research/eAUC1.pdf>.
Author: Mai Zhou [aut, cre, cph],
Xue Ding [aut],
Yumin Zhao [aut]
Maintainer: Mai Zhou <maizhou@gmail.com>
Diff between emplikAUC versions 0.4 dated 2024-05-29 and 0.5 dated 2025-11-06
DESCRIPTION | 6 +++--- MD5 | 14 +++++++++----- NAMESPACE | 2 +- R/EL2paucT1T2.R | 2 +- R/New.el2.test.R |only R/el2testPaucT.R | 2 +- R/eltest4diff2auc.R |only README | 24 ++++++++++++++++++++++-- man/New.el2.test.Rd |only man/eltest4diff2auc.Rd |only 10 files changed, 37 insertions(+), 13 deletions(-)
Title: Models, Datasets and Transformations for Images
Description: Provides access to datasets, models and preprocessing
facilities for deep learning with images. Integrates seamlessly
with the 'torch' package and it's 'API' borrows heavily from
'PyTorch' vision package.
Author: Daniel Falbel [aut, cre],
Christophe Regouby [ctb],
Akanksha Koshti [ctb],
Derrick Richard [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@posit.co>
Diff between torchvision versions 0.7.0 dated 2025-07-18 and 0.8.0 dated 2025-11-06
DESCRIPTION | 30 + MD5 | 260 +++++++++------ NAMESPACE | 109 ++++++ NEWS.md | 48 ++ R/collection-rf100-biology.R |only R/collection-rf100-damage.R |only R/collection-rf100-doc.R |only R/collection-rf100-infrared.R |only R/collection-rf100-medical.R |only R/collection-rf100-underwater.R |only R/dataset-caltech.R | 4 R/dataset-coco.R | 90 ++--- R/dataset-eurosat.R | 8 R/dataset-fer.R | 40 +- R/dataset-fgvc.R | 8 R/dataset-flickr.R | 14 R/dataset-flowers.R | 2 R/dataset-lfw.R |only R/dataset-mnist.R | 181 ++++------ R/dataset-oxfordiiitpet.R | 16 R/dataset-pascal.R |only R/dataset-places365.R |only R/dataset-plankton.R |only R/dataset-rf100-peixos.R |only R/folder-dataset.R | 20 - R/globals.R | 2 R/imagenet.R |only R/models-alexnet.R | 12 R/models-convnext.R |only R/models-deeplabv3.R |only R/models-efficientnet.R |only R/models-efficientnetv2.R |only R/models-facenet.R |only R/models-faster_rcnn.R |only R/models-fcn.R |only R/models-inception.R | 20 - R/models-maxvit.R |only R/models-mobilenetv2.R | 15 R/models-mobilenetv3.R |only R/models-mobilenetv3_large.R |only R/models-resnet.R | 29 + R/models-vgg.R | 32 + R/models-vit.R |only R/ops-box_convert.R | 28 - R/ops-boxes.R | 78 ++-- R/transforms-array.R | 10 R/transforms-defaults.R | 34 +- R/transforms-generics.R | 76 ++-- R/transforms-tensor.R | 44 +- R/utils.R | 10 R/vision_utils.R | 24 + inst/po/fr/LC_MESSAGES/R-torchvision.mo |binary man/base_loader.Rd | 5 man/caltech_dataset.Rd | 7 man/cifar_datasets.Rd | 7 man/coco_detection_dataset.Rd | 14 man/dot-rename_mobilenet_v3_state_dict.Rd |only man/eurosat_dataset.Rd | 15 man/fer_dataset.Rd | 7 man/fgvc_aircraft_dataset.Rd | 7 man/flowers102_dataset.Rd | 7 man/image_folder_dataset.Rd | 18 + man/imagenet_classes.Rd |only man/lfw_dataset.Rd |only man/magick_loader.Rd | 5 man/mnist_dataset.Rd | 38 +- man/model_alexnet.Rd | 13 man/model_convnext.Rd |only man/model_deeplabv3.Rd |only man/model_efficientnet.Rd |only man/model_efficientnet_v2.Rd |only man/model_facenet.Rd |only man/model_fasterrcnn.Rd |only man/model_fcn_resnet.Rd |only man/model_inception_v3.Rd | 13 man/model_maxvit.Rd |only man/model_mobilenet_v2.Rd | 16 man/model_mobilenet_v3.Rd |only man/model_resnet.Rd | 13 man/model_vgg.Rd | 13 man/model_vit.Rd |only man/oxfordiiitpet_dataset.Rd | 7 man/oxfordiiitpet_segmentation_dataset.Rd | 5 man/pascal_voc_datasets.Rd |only man/places365_dataset.Rd |only man/rf100_biology_collection.Rd |only man/rf100_damage_collection.Rd |only man/rf100_document_collection.Rd |only man/rf100_infrared_collection.Rd |only man/rf100_medical_collection.Rd |only man/rf100_peixos_segmentation_dataset.Rd |only man/rf100_underwater_collection.Rd |only man/tiny_imagenet_dataset.Rd | 7 man/transform_adjust_brightness.Rd | 20 - man/transform_adjust_contrast.Rd | 20 - man/transform_adjust_gamma.Rd | 22 - man/transform_adjust_hue.Rd | 22 - man/transform_adjust_saturation.Rd | 20 - man/transform_affine.Rd | 20 - man/transform_center_crop.Rd | 20 - man/transform_color_jitter.Rd | 32 - man/transform_convert_image_dtype.Rd | 20 - man/transform_crop.Rd | 20 - man/transform_five_crop.Rd | 36 -- man/transform_grayscale.Rd | 20 - man/transform_hflip.Rd | 20 - man/transform_linear_transformation.Rd | 20 - man/transform_normalize.Rd | 20 - man/transform_pad.Rd | 20 - man/transform_perspective.Rd | 20 - man/transform_random_affine.Rd | 32 - man/transform_random_apply.Rd | 36 -- man/transform_random_choice.Rd | 36 -- man/transform_random_crop.Rd | 32 - man/transform_random_erasing.Rd | 32 - man/transform_random_grayscale.Rd | 32 - man/transform_random_horizontal_flip.Rd | 32 - man/transform_random_order.Rd | 36 -- man/transform_random_perspective.Rd | 32 - man/transform_random_resized_crop.Rd | 32 - man/transform_random_rotation.Rd | 32 - man/transform_random_vertical_flip.Rd | 32 - man/transform_resize.Rd | 20 - man/transform_resized_crop.Rd | 36 -- man/transform_rgb_to_grayscale.Rd | 20 - man/transform_rotate.Rd | 20 - man/transform_ten_crop.Rd | 36 -- man/transform_to_tensor.Rd | 20 - man/transform_vflip.Rd | 20 - man/whoi_plankton_dataset.Rd |only man/whoi_small_coralnet_dataset.Rd |only po/R-fr.po | 370 +++++++++++++++------- po/R-torchvision.pot | 206 ++++++++---- tests/testthat/assets/class/dog/dog.5.jpg |binary tests/testthat/helper-torchvision.R | 6 tests/testthat/test-collection-rf100-biology.R |only tests/testthat/test-collection-rf100-damage.R |only tests/testthat/test-collection-rf100-doc.R |only tests/testthat/test-collection-rf100-infrared.R |only tests/testthat/test-collection-rf100-medical.R |only tests/testthat/test-collection-rf100-underwater.R |only tests/testthat/test-dataset-coco.R | 21 - tests/testthat/test-dataset-lfw.R |only tests/testthat/test-dataset-mnist.R | 69 ++-- tests/testthat/test-dataset-pascal.R |only tests/testthat/test-dataset-places365.R |only tests/testthat/test-dataset-plankton.R |only tests/testthat/test-dataset-rf100-peixos.R |only tests/testthat/test-folder-dataset.R | 15 tests/testthat/test-models-convnext.R |only tests/testthat/test-models-deeplabv3.R |only tests/testthat/test-models-efficientnet.R |only tests/testthat/test-models-efficientnetv2.R |only tests/testthat/test-models-facenet.R |only tests/testthat/test-models-faster_rcnn.R |only tests/testthat/test-models-fcn.R |only tests/testthat/test-models-maxvit.R |only tests/testthat/test-models-mobilenetv3.R |only tests/testthat/test-models-resnet.R | 11 tests/testthat/test-models-vgg.R | 6 tests/testthat/test-models-vit.R |only tests/testthat/test-transforms-magick.R | 7 tests/testthat/test-transforms.R | 32 + tests/testthat/test-vision-utils.R | 24 + tools/convert-models.py | 61 +++ 165 files changed, 1633 insertions(+), 1596 deletions(-)
Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: Interface to integrate 'igraph' and 'ggplot2' graphics in a normalized coordinate system. 'RGraphSpace' implements new geometric objects using 'ggplot2' prototypes, customized for side-by-side visualization of multiple graphs. By scaling shapes and graph elements, 'RGraphSpace' can provide a framework for layered visualizations.
Author: Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between RGraphSpace versions 1.0.9 dated 2025-07-23 and 1.1.0 dated 2025-11-06
DESCRIPTION | 10 +- MD5 | 24 ++--- NAMESPACE | 1 R/gspaceChecks.R | 194 +++++++++++++++++++++++----------------------- R/gspaceMethods.R | 7 + R/gspacePlots.R | 6 - R/gspaceSupplements.R | 45 +++++----- R/gspaceValidation.R | 4 build/vignette.rds |binary inst/doc/RGraphSpace.R | 6 - inst/doc/RGraphSpace.Rmd | 22 +++-- inst/doc/RGraphSpace.html | 84 +++++++++++-------- vignettes/RGraphSpace.Rmd | 22 +++-- 13 files changed, 228 insertions(+), 197 deletions(-)
Title: An Inclusive, Unifying API for Progress Updates
Description: A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will als [...truncated...]
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between progressr versions 0.17.0 dated 2025-10-15 and 0.18.0 dated 2025-11-06
DESCRIPTION | 6 +- MD5 | 20 +++---- NAMESPACE | 1 NEWS.md | 25 ++++++++ R/progressor.R | 25 ++++++++ R/with_progress.R | 18 ++++-- build/vignette.rds |binary inst/doc/progressr-91-appendix.html | 80 ++++++++++++++++++++++++---- inst/doc/progressr-91-appendix.md | 101 ++++++++++++++++++++++++++++++++---- man/progressor.Rd | 4 + vignettes/progressr-91-appendix.md | 101 ++++++++++++++++++++++++++++++++---- 11 files changed, 328 insertions(+), 53 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] ,
Jay Hesselberth [aut] ,
Maelle Salmon [aut] ,
Olivier Roy [aut],
Salim Brueggemann [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between pkgdown versions 2.1.3 dated 2025-05-24 and 2.2.0 dated 2025-11-06
pkgdown-2.1.3/pkgdown/R/autolink_html.R |only pkgdown-2.1.3/pkgdown/man/autolink_html.Rd |only pkgdown-2.1.3/pkgdown/man/preview_page.Rd |only pkgdown-2.2.0/pkgdown/DESCRIPTION | 25 pkgdown-2.2.0/pkgdown/LICENSE | 2 pkgdown-2.2.0/pkgdown/MD5 | 247 +++--- pkgdown-2.2.0/pkgdown/NAMESPACE | 4 pkgdown-2.2.0/pkgdown/NEWS.md | 23 pkgdown-2.2.0/pkgdown/R/build-article.R | 23 pkgdown-2.2.0/pkgdown/R/build-github.R | 8 pkgdown-2.2.0/pkgdown/R/build-home-authors.R | 8 pkgdown-2.2.0/pkgdown/R/build-home-index.R | 4 pkgdown-2.2.0/pkgdown/R/build-llm-dl.R |only pkgdown-2.2.0/pkgdown/R/build-llm.R |only pkgdown-2.2.0/pkgdown/R/build-news.R | 4 pkgdown-2.2.0/pkgdown/R/build-quarto-articles.R | 1 pkgdown-2.2.0/pkgdown/R/build-reference.R | 4 pkgdown-2.2.0/pkgdown/R/build.R | 32 pkgdown-2.2.0/pkgdown/R/clean.R | 4 pkgdown-2.2.0/pkgdown/R/figure.R | 4 pkgdown-2.2.0/pkgdown/R/import-standalone-obj-type.R | 43 - pkgdown-2.2.0/pkgdown/R/import-standalone-types-check.R | 304 ++++--- pkgdown-2.2.0/pkgdown/R/navbar.R | 5 pkgdown-2.2.0/pkgdown/R/pkgdown-package.R | 7 pkgdown-2.2.0/pkgdown/R/preview.R | 12 pkgdown-2.2.0/pkgdown/R/rd-example.R | 8 pkgdown-2.2.0/pkgdown/R/rd-html.R | 15 pkgdown-2.2.0/pkgdown/R/rd.R | 4 pkgdown-2.2.0/pkgdown/R/render.R | 16 pkgdown-2.2.0/pkgdown/R/test.R | 6 pkgdown-2.2.0/pkgdown/R/tweak-homepage.R | 4 pkgdown-2.2.0/pkgdown/R/tweak-page.R | 1 pkgdown-2.2.0/pkgdown/R/tweak-reference.R | 16 pkgdown-2.2.0/pkgdown/R/tweak-tags.R | 23 pkgdown-2.2.0/pkgdown/R/utils-io.R | 4 pkgdown-2.2.0/pkgdown/R/utils.R | 10 pkgdown-2.2.0/pkgdown/README.md | 4 pkgdown-2.2.0/pkgdown/build/stage23.rdb |binary pkgdown-2.2.0/pkgdown/inst/BS5/assets/katex-auto.js | 4 pkgdown-2.2.0/pkgdown/inst/BS5/assets/lightswitch.js | 4 pkgdown-2.2.0/pkgdown/inst/BS5/assets/pkgdown.js | 200 ++-- pkgdown-2.2.0/pkgdown/inst/BS5/assets/pkgdown.scss | 401 +++++++--- pkgdown-2.2.0/pkgdown/inst/BS5/templates/content-reference-index.html | 4 pkgdown-2.2.0/pkgdown/inst/doc/accessibility.R | 4 pkgdown-2.2.0/pkgdown/inst/doc/accessibility.Rmd | 6 pkgdown-2.2.0/pkgdown/inst/doc/accessibility.html | 5 pkgdown-2.2.0/pkgdown/inst/doc/customise.R | 4 pkgdown-2.2.0/pkgdown/inst/doc/customise.Rmd | 21 pkgdown-2.2.0/pkgdown/inst/doc/customise.html | 145 +-- pkgdown-2.2.0/pkgdown/inst/doc/how-to-update-released-site.R | 2 pkgdown-2.2.0/pkgdown/inst/doc/how-to-update-released-site.Rmd | 3 pkgdown-2.2.0/pkgdown/inst/doc/how-to-update-released-site.html | 5 pkgdown-2.2.0/pkgdown/inst/doc/linking.R | 2 pkgdown-2.2.0/pkgdown/inst/doc/linking.Rmd | 3 pkgdown-2.2.0/pkgdown/inst/doc/linking.html | 5 pkgdown-2.2.0/pkgdown/inst/doc/metadata.R | 2 pkgdown-2.2.0/pkgdown/inst/doc/metadata.Rmd | 3 pkgdown-2.2.0/pkgdown/inst/doc/metadata.html | 5 pkgdown-2.2.0/pkgdown/inst/doc/pkgdown.R | 4 pkgdown-2.2.0/pkgdown/inst/doc/pkgdown.Rmd | 6 pkgdown-2.2.0/pkgdown/inst/doc/pkgdown.html | 5 pkgdown-2.2.0/pkgdown/inst/doc/quarto.html | 143 +++ pkgdown-2.2.0/pkgdown/inst/doc/translations.R | 2 pkgdown-2.2.0/pkgdown/inst/doc/translations.Rmd | 42 - pkgdown-2.2.0/pkgdown/inst/doc/translations.html | 50 - pkgdown-2.2.0/pkgdown/inst/po/ca/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/de/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/dk/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/es/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/fr/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/ja |only pkgdown-2.2.0/pkgdown/inst/po/ko/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/nl |only pkgdown-2.2.0/pkgdown/inst/po/pt/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/tr/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/inst/po/zh_CN/LC_MESSAGES/R-pkgdown.mo |binary pkgdown-2.2.0/pkgdown/man/build_articles.Rd | 3 pkgdown-2.2.0/pkgdown/man/build_home.Rd | 1 pkgdown-2.2.0/pkgdown/man/build_llm_docs.Rd |only pkgdown-2.2.0/pkgdown/man/build_news.Rd | 1 pkgdown-2.2.0/pkgdown/man/build_reference.Rd | 1 pkgdown-2.2.0/pkgdown/man/build_site.Rd | 7 pkgdown-2.2.0/pkgdown/man/build_tutorials.Rd | 1 pkgdown-2.2.0/pkgdown/man/figures/lifecycle-deprecated.svg | 22 pkgdown-2.2.0/pkgdown/man/figures/lifecycle-experimental.svg | 22 pkgdown-2.2.0/pkgdown/man/figures/lifecycle-stable.svg | 30 pkgdown-2.2.0/pkgdown/man/figures/lifecycle-superseded.svg | 22 pkgdown-2.2.0/pkgdown/man/figures/logo.png |binary pkgdown-2.2.0/pkgdown/man/pkgdown-package.Rd | 2 pkgdown-2.2.0/pkgdown/man/test-dont.Rd | 4 pkgdown-2.2.0/pkgdown/man/test-figures.Rd | 2 pkgdown-2.2.0/pkgdown/man/test-math-examples.Rd | 4 pkgdown-2.2.0/pkgdown/po/R-ca.po | 155 +-- pkgdown-2.2.0/pkgdown/po/R-de.po | 159 +-- pkgdown-2.2.0/pkgdown/po/R-dk.po | 156 +-- pkgdown-2.2.0/pkgdown/po/R-es.po | 154 +-- pkgdown-2.2.0/pkgdown/po/R-fr.po | 148 +-- pkgdown-2.2.0/pkgdown/po/R-ja.po |only pkgdown-2.2.0/pkgdown/po/R-ko.po | 184 ++-- pkgdown-2.2.0/pkgdown/po/R-nl.po |only pkgdown-2.2.0/pkgdown/po/R-pkgdown.pot | 148 +-- pkgdown-2.2.0/pkgdown/po/R-pt.po | 155 +-- pkgdown-2.2.0/pkgdown/po/R-tr.po | 153 +-- pkgdown-2.2.0/pkgdown/po/R-zh_CN.po | 192 ++-- pkgdown-2.2.0/pkgdown/tests/testthat.R | 8 pkgdown-2.2.0/pkgdown/tests/testthat/_snaps/build-llm-dl.md |only pkgdown-2.2.0/pkgdown/tests/testthat/_snaps/build-llm.md |only pkgdown-2.2.0/pkgdown/tests/testthat/_snaps/build-reference.md | 2 pkgdown-2.2.0/pkgdown/tests/testthat/_snaps/package.md | 9 pkgdown-2.2.0/pkgdown/tests/testthat/_snaps/rd-html.md | 8 pkgdown-2.2.0/pkgdown/tests/testthat/assets/llm.html |only pkgdown-2.2.0/pkgdown/tests/testthat/assets/reference-fail/R/f.R | 3 pkgdown-2.2.0/pkgdown/tests/testthat/assets/reference-selector/R/funs.R | 6 pkgdown-2.2.0/pkgdown/tests/testthat/assets/reference/R/funs.R | 12 pkgdown-2.2.0/pkgdown/tests/testthat/helper.R | 4 pkgdown-2.2.0/pkgdown/tests/testthat/test-build-home-authors.R | 7 pkgdown-2.2.0/pkgdown/tests/testthat/test-build-llm-dl.R |only pkgdown-2.2.0/pkgdown/tests/testthat/test-build-llm.R |only pkgdown-2.2.0/pkgdown/tests/testthat/test-build.R | 30 pkgdown-2.2.0/pkgdown/tests/testthat/test-navbar-menu.R | 1 pkgdown-2.2.0/pkgdown/tests/testthat/test-package.R | 2 pkgdown-2.2.0/pkgdown/tests/testthat/test-rd-html.R | 2 pkgdown-2.2.0/pkgdown/tests/testthat/test-topics.R | 109 +- pkgdown-2.2.0/pkgdown/tests/testthat/test-tweak-tags.R | 8 pkgdown-2.2.0/pkgdown/vignettes/accessibility.Rmd | 6 pkgdown-2.2.0/pkgdown/vignettes/customise.Rmd | 21 pkgdown-2.2.0/pkgdown/vignettes/how-to-update-released-site.Rmd | 3 pkgdown-2.2.0/pkgdown/vignettes/linking.Rmd | 3 pkgdown-2.2.0/pkgdown/vignettes/metadata.Rmd | 3 pkgdown-2.2.0/pkgdown/vignettes/pkgdown.Rmd | 6 pkgdown-2.2.0/pkgdown/vignettes/test/jss.log | 2 pkgdown-2.2.0/pkgdown/vignettes/translations.Rmd | 42 - 132 files changed, 2401 insertions(+), 1577 deletions(-)
Title: Process Metadata from the 'Open Graph Protocol'
Description: Social media sites often embed cards when links are shared, based on
metadata in the 'Open Graph Protocol' (<https://ogp.me/>). This supports extracting
that metadata from a website. It further allows for the creation of tags to
add to a website to support the 'Open Graph Protocol' and provides a list of the
standard tags and their required properties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between opengraph versions 0.0.3 dated 2025-09-04 and 0.0.4 dated 2025-11-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- tests/testthat/test-property.R | 11 +++++++---- tests/testthat/test-validate.R | 16 ++++++++-------- 4 files changed, 22 insertions(+), 19 deletions(-)
Title: Regularization Paths for SCAD and MCP Penalized Regression
Models
Description: Fits regularization paths for linear regression, GLM, and Cox
regression models using lasso or nonconvex penalties, in particular the
minimax concave penalty (MCP) and smoothly clipped absolute deviation (SCAD)
penalty, with options for additional L2 penalties (the "elastic net" idea).
Utilities for carrying out cross-validation as well as post-fitting
visualization, summarization, inference, and prediction are also provided.
For more information, see Breheny and Huang (2011) <doi:10.1214/10-AOAS388>
or visit the ncvreg homepage <https://pbreheny.github.io/ncvreg/>.
Author: Patrick Breheny [aut, cre] ,
Ryan Miller [aut] ,
Logan Harris [aut]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between ncvreg versions 3.15.0 dated 2025-02-11 and 3.16.0 dated 2025-11-06
ncvreg-3.15.0/ncvreg/R/boot-ncvreg.R |only ncvreg-3.15.0/ncvreg/inst/doc/getting-started.R |only ncvreg-3.15.0/ncvreg/inst/doc/getting-started.html |only ncvreg-3.15.0/ncvreg/inst/doc/getting-started.rmd |only ncvreg-3.15.0/ncvreg/inst/tinytest/_median-survfit.R |only ncvreg-3.15.0/ncvreg/inst/tinytest/boot-ncvreg.R |only ncvreg-3.15.0/ncvreg/man/boot_ncvreg.Rd |only ncvreg-3.15.0/ncvreg/vignettes/getting-started.rmd |only ncvreg-3.16.0/ncvreg/DESCRIPTION | 27 - ncvreg-3.16.0/ncvreg/MD5 | 65 ++-- ncvreg-3.16.0/ncvreg/NAMESPACE | 2 ncvreg-3.16.0/ncvreg/NEWS.md | 7 ncvreg-3.16.0/ncvreg/R/cv-ncvreg.R | 2 ncvreg-3.16.0/ncvreg/R/intervals.R |only ncvreg-3.16.0/ncvreg/R/ncvreg.R | 4 ncvreg-3.16.0/ncvreg/R/ncvsurv.R | 2 ncvreg-3.16.0/ncvreg/R/summary-cv-ncvreg.R | 13 ncvreg-3.16.0/ncvreg/R/summary-ncvreg.R | 3 ncvreg-3.16.0/ncvreg/build/partial.rdb |binary ncvreg-3.16.0/ncvreg/build/vignette.rds |binary ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.R |only ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.html |only ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.rmd |only ncvreg-3.16.0/ncvreg/inst/tinytest/auc.R | 12 ncvreg-3.16.0/ncvreg/inst/tinytest/binomial.R | 87 ++--- ncvreg-3.16.0/ncvreg/inst/tinytest/coerce.R | 18 - ncvreg-3.16.0/ncvreg/inst/tinytest/cv-ncvreg.R | 134 ++++---- ncvreg-3.16.0/ncvreg/inst/tinytest/cv-ncvsurv.R | 106 +++--- ncvreg-3.16.0/ncvreg/inst/tinytest/errors-and-warnings.R | 60 +-- ncvreg-3.16.0/ncvreg/inst/tinytest/intervals.R |only ncvreg-3.16.0/ncvreg/inst/tinytest/mfdr.R | 81 ++--- ncvreg-3.16.0/ncvreg/inst/tinytest/ncvsurv.R | 237 +++++++-------- ncvreg-3.16.0/ncvreg/inst/tinytest/special-cases.R | 44 -- ncvreg-3.16.0/ncvreg/man/cv.ncvreg.Rd | 2 ncvreg-3.16.0/ncvreg/man/intervals.Rd |only ncvreg-3.16.0/ncvreg/man/ncvreg-package.Rd | 6 ncvreg-3.16.0/ncvreg/man/ncvreg.Rd | 4 ncvreg-3.16.0/ncvreg/man/ncvsurv.Rd | 2 ncvreg-3.16.0/ncvreg/man/summary.cv.ncvreg.Rd | 9 ncvreg-3.16.0/ncvreg/tests/test.R | 2 ncvreg-3.16.0/ncvreg/vignettes/ncvreg.rmd |only 41 files changed, 457 insertions(+), 472 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between lidR versions 4.2.1 dated 2025-06-02 and 4.2.2 dated 2025-11-06
DESCRIPTION | 10 - MD5 | 68 ++++---- NEWS.md | 9 - R/Class-LAS.R | 17 -- R/RcppExports.R | 8 R/add_attribute.R | 2 R/classify.R | 2 R/connected_components.R | 11 - R/io_readLAScatalog.R | 2 R/las_tools.R | 2 R/metrics_point.R | 13 + R/rasterize.R | 2 R/st_crs.R | 2 R/utils_colors.R | 41 ++-- build/vignette.rds |binary inst/doc/lidR-LAS-class.Rmd | 2 inst/doc/lidR-LAS-class.html | 2 inst/doc/lidR-LAScatalog-class.Rmd | 2 inst/doc/lidR-LAScatalog-class.html | 2 inst/include/lidR/Grid3D.h | 44 +++-- man/LAS-class.Rd | 15 - man/LASheader-class.Rd | 2 man/add_attribute.Rd | 2 man/classify.Rd | 2 man/connected_components.Rd | 7 man/las_utilities.Rd | 2 man/rasterize.Rd | 2 src/LAS.cpp | 300 +++++++++++++++++++++++++++++++----- src/LAS.h | 1 src/RcppExports.cpp | 24 ++ src/RcppFunction.cpp | 11 + src/knn.cpp | 82 ++++++--- tests/testthat/Rplots.pdf |binary vignettes/lidR-LAS-class.Rmd | 2 vignettes/lidR-LAScatalog-class.Rmd | 2 35 files changed, 502 insertions(+), 193 deletions(-)