Thu, 06 Nov 2025

Package signnet updated to version 1.0.6 with previous version 1.0.5 dated 2025-02-05

Title: Methods to Analyse Signed Networks
Description: Methods for the analysis of signed networks. This includes several measures for structural balance as introduced by Cartwright and Harary (1956) <doi:10.1037/h0046049>, blockmodeling algorithms from Doreian (2008) <doi:10.1016/j.socnet.2008.03.005>, various centrality indices, and projections of signed two-mode networks introduced by Schoch (2020) <doi:10.1080/0022250X.2019.1711376>.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>

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Package rebmix updated to version 2.17.0 with previous version 2.16.0 dated 2024-07-10

Title: Finite Mixture Modeling, Clustering & Classification
Description: Random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, Gumbel, binomial, Poisson, Dirac, uniform or circular von Mises parametric families.
Author: Marko Nagode [aut, cre] , Branislav Panic [ctb] , Jernej Klemenc [ctb] , Simon Oman [ctb]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>

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Package tind (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-10-26 0.2.1
2025-10-22 0.2

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Package bndesr (with last version 1.0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-02-06 1.0.4
2023-06-06 1.0.3
2023-04-02 1.0.2

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Package FactorCopulaModel updated to version 0.1.1 with previous version 0.1.0 dated 2025-10-29

Title: Factor Copula Models
Description: Inference methods for factor copula models for continuous data in Krupskii and Joe (2013) <doi:10.1016/j.jmva.2013.05.001>, Krupskii and Joe (2015) <doi:10.1016/j.jmva.2014.11.002>, Fan and Joe (2024) <doi:10.1016/j.jmva.2023.105263>, one factor truncated vine models in Joe (2018) <doi:10.1002/cjs.11481>, and Gaussian oblique factor models. Functions for computing tail-weighted dependence measures in Lee, Joe and Krupskii (2018) <doi:10.1080/10485252.2017.1407414> and estimating tail dependence parameter.
Author: Harry Joe [aut], Pavel Krupskii [aut, cre], Xinyao Fan [aut], Allan Macleod [cph], Robert Gentleman [cph], Ross Ihaka [cph]
Maintainer: Pavel Krupskii <pavel.krupskiy@unimelb.edu.au>

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Package exametrika updated to version 1.6.5 with previous version 1.6.3 dated 2025-09-30

Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for engineering and processing test data: Classical Test Theory (CTT) with reliability coefficients for continuous ability assessment; Item Response Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank Analysis (LRA) for ordinal clustering with automatic determination of cluster numbers; Biclustering methods including infinite relational models for simultaneous clustering of examinees and items without predefined cluster numbers; and Bayesian Network Models (BNM) for visualizing inter-item dependencies. Features local dependence analysis through LRA and biclustering, parameter estimation, dimensionality assessment, and network structure visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>

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Package emplikAUC updated to version 0.5 with previous version 0.4 dated 2024-05-29

Title: Empirical Likelihood Ratio Test/Confidence Interval for AUC or pAUC
Description: Test hypotheses and construct confidence intervals for AUC (area under Receiver Operating Characteristic curve) and pAUC (partial area under ROC curve), from the given two samples of test data with disease/healthy subjects. The method used is based on TWO SAMPLE empirical likelihood and PROFILE empirical likelihood, as described in <https://www.ms.uky.edu/~mai/research/eAUC1.pdf>.
Author: Mai Zhou [aut, cre, cph], Xue Ding [aut], Yumin Zhao [aut]
Maintainer: Mai Zhou <maizhou@gmail.com>

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Package torchvision updated to version 0.8.0 with previous version 0.7.0 dated 2025-07-18

Title: Models, Datasets and Transformations for Images
Description: Provides access to datasets, models and preprocessing facilities for deep learning with images. Integrates seamlessly with the 'torch' package and it's 'API' borrows heavily from 'PyTorch' vision package.
Author: Daniel Falbel [aut, cre], Christophe Regouby [ctb], Akanksha Koshti [ctb], Derrick Richard [ctb], RStudio [cph]
Maintainer: Daniel Falbel <daniel@posit.co>

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Package RGraphSpace updated to version 1.1.0 with previous version 1.0.9 dated 2025-07-23

Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: Interface to integrate 'igraph' and 'ggplot2' graphics in a normalized coordinate system. 'RGraphSpace' implements new geometric objects using 'ggplot2' prototypes, customized for side-by-side visualization of multiple graphs. By scaling shapes and graph elements, 'RGraphSpace' can provide a framework for layered visualizations.
Author: Victor Apolonio [ctb], Vinicius Chagas [ctb], Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>

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Package progressr updated to version 0.18.0 with previous version 0.17.0 dated 2025-10-15

Title: An Inclusive, Unifying API for Progress Updates
Description: A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will als [...truncated...]
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between progressr versions 0.17.0 dated 2025-10-15 and 0.18.0 dated 2025-11-06

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Package pkgdown updated to version 2.2.0 with previous version 2.1.3 dated 2025-05-24

Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] , Jay Hesselberth [aut] , Maelle Salmon [aut] , Olivier Roy [aut], Salim Brueggemann [aut] , Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>

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Package opengraph updated to version 0.0.4 with previous version 0.0.3 dated 2025-09-04

Title: Process Metadata from the 'Open Graph Protocol'
Description: Social media sites often embed cards when links are shared, based on metadata in the 'Open Graph Protocol' (<https://ogp.me/>). This supports extracting that metadata from a website. It further allows for the creation of tags to add to a website to support the 'Open Graph Protocol' and provides a list of the standard tags and their required properties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>

Diff between opengraph versions 0.0.3 dated 2025-09-04 and 0.0.4 dated 2025-11-06

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Permanent link

Package ncvreg updated to version 3.16.0 with previous version 3.15.0 dated 2025-02-11

Title: Regularization Paths for SCAD and MCP Penalized Regression Models
Description: Fits regularization paths for linear regression, GLM, and Cox regression models using lasso or nonconvex penalties, in particular the minimax concave penalty (MCP) and smoothly clipped absolute deviation (SCAD) penalty, with options for additional L2 penalties (the "elastic net" idea). Utilities for carrying out cross-validation as well as post-fitting visualization, summarization, inference, and prediction are also provided. For more information, see Breheny and Huang (2011) <doi:10.1214/10-AOAS388> or visit the ncvreg homepage <https://pbreheny.github.io/ncvreg/>.
Author: Patrick Breheny [aut, cre] , Ryan Miller [aut] , Logan Harris [aut]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>

Diff between ncvreg versions 3.15.0 dated 2025-02-11 and 3.16.0 dated 2025-11-06

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 ncvreg-3.16.0/ncvreg/NEWS.md                             |    7 
 ncvreg-3.16.0/ncvreg/R/cv-ncvreg.R                       |    2 
 ncvreg-3.16.0/ncvreg/R/intervals.R                       |only
 ncvreg-3.16.0/ncvreg/R/ncvreg.R                          |    4 
 ncvreg-3.16.0/ncvreg/R/ncvsurv.R                         |    2 
 ncvreg-3.16.0/ncvreg/R/summary-cv-ncvreg.R               |   13 
 ncvreg-3.16.0/ncvreg/R/summary-ncvreg.R                  |    3 
 ncvreg-3.16.0/ncvreg/build/partial.rdb                   |binary
 ncvreg-3.16.0/ncvreg/build/vignette.rds                  |binary
 ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.R                   |only
 ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.html                |only
 ncvreg-3.16.0/ncvreg/inst/doc/ncvreg.rmd                 |only
 ncvreg-3.16.0/ncvreg/inst/tinytest/auc.R                 |   12 
 ncvreg-3.16.0/ncvreg/inst/tinytest/binomial.R            |   87 ++---
 ncvreg-3.16.0/ncvreg/inst/tinytest/coerce.R              |   18 -
 ncvreg-3.16.0/ncvreg/inst/tinytest/cv-ncvreg.R           |  134 ++++----
 ncvreg-3.16.0/ncvreg/inst/tinytest/cv-ncvsurv.R          |  106 +++---
 ncvreg-3.16.0/ncvreg/inst/tinytest/errors-and-warnings.R |   60 +--
 ncvreg-3.16.0/ncvreg/inst/tinytest/intervals.R           |only
 ncvreg-3.16.0/ncvreg/inst/tinytest/mfdr.R                |   81 ++---
 ncvreg-3.16.0/ncvreg/inst/tinytest/ncvsurv.R             |  237 +++++++--------
 ncvreg-3.16.0/ncvreg/inst/tinytest/special-cases.R       |   44 --
 ncvreg-3.16.0/ncvreg/man/cv.ncvreg.Rd                    |    2 
 ncvreg-3.16.0/ncvreg/man/intervals.Rd                    |only
 ncvreg-3.16.0/ncvreg/man/ncvreg-package.Rd               |    6 
 ncvreg-3.16.0/ncvreg/man/ncvreg.Rd                       |    4 
 ncvreg-3.16.0/ncvreg/man/ncvsurv.Rd                      |    2 
 ncvreg-3.16.0/ncvreg/man/summary.cv.ncvreg.Rd            |    9 
 ncvreg-3.16.0/ncvreg/tests/test.R                        |    2 
 ncvreg-3.16.0/ncvreg/vignettes/ncvreg.rmd                |only
 41 files changed, 457 insertions(+), 472 deletions(-)

More information about ncvreg at CRAN
Permanent link

Package lidR updated to version 4.2.2 with previous version 4.2.1 dated 2025-06-02

Title: Airborne LiDAR Data Manipulation and Visualization for Forestry Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data manipulation and visualization. Read/write 'las' and 'laz' files, computation of metrics in area based approach, point filtering, artificial point reduction, classification from geographic data, normalization, individual tree segmentation and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph], David Auty [aut, ctb] , Florian De Boissieu [ctb] , Andrew Sanchez Meador [ctb] for segment_snags), Bourdon Jean-Francois [ctb] for track_sensor), Gatziolis Demetrios [ctb] for track_sensor), Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>

Diff between lidR versions 4.2.1 dated 2025-06-02 and 4.2.2 dated 2025-11-06

 DESCRIPTION                         |   10 -
 MD5                                 |   68 ++++----
 NEWS.md                             |    9 -
 R/Class-LAS.R                       |   17 --
 R/RcppExports.R                     |    8 
 R/add_attribute.R                   |    2 
 R/classify.R                        |    2 
 R/connected_components.R            |   11 -
 R/io_readLAScatalog.R               |    2 
 R/las_tools.R                       |    2 
 R/metrics_point.R                   |   13 +
 R/rasterize.R                       |    2 
 R/st_crs.R                          |    2 
 R/utils_colors.R                    |   41 ++--
 build/vignette.rds                  |binary
 inst/doc/lidR-LAS-class.Rmd         |    2 
 inst/doc/lidR-LAS-class.html        |    2 
 inst/doc/lidR-LAScatalog-class.Rmd  |    2 
 inst/doc/lidR-LAScatalog-class.html |    2 
 inst/include/lidR/Grid3D.h          |   44 +++--
 man/LAS-class.Rd                    |   15 -
 man/LASheader-class.Rd              |    2 
 man/add_attribute.Rd                |    2 
 man/classify.Rd                     |    2 
 man/connected_components.Rd         |    7 
 man/las_utilities.Rd                |    2 
 man/rasterize.Rd                    |    2 
 src/LAS.cpp                         |  300 +++++++++++++++++++++++++++++++-----
 src/LAS.h                           |    1 
 src/RcppExports.cpp                 |   24 ++
 src/RcppFunction.cpp                |   11 +
 src/knn.cpp                         |   82 ++++++---
 tests/testthat/Rplots.pdf           |binary
 vignettes/lidR-LAS-class.Rmd        |    2 
 vignettes/lidR-LAScatalog-class.Rmd |    2 
 35 files changed, 502 insertions(+), 193 deletions(-)

More information about lidR at CRAN
Permanent link


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