Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-19 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-18 4.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-19 0.3.0
2022-03-25 0.2.0
2021-05-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-04 1.1.1
2022-02-10 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-09 1.0.3
2022-01-10 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-16 2.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-22 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-12 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-04 2.0.3
2025-03-25 2.0.2
2025-02-13 2.0.1
2024-07-07 2.0.0
2024-05-30 1.0.9
2024-05-16 1.0.8
2024-05-10 1.0.7
2024-04-29 1.0.6
2024-04-21 1.0.5
2024-04-20 1.0.4
2024-04-13 1.0.3
2024-04-10 1.0.2
2024-04-05 1.0.1
2024-04-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-01 0.2.1
2022-02-03 0.2
2021-09-12 0.1.1
2021-09-09 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-14 0.1.3
2023-06-19 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-12 0.1.6
2023-04-25 0.1.5
2022-10-26 0.1.4
2020-08-25 0.1.3
2020-05-26 0.1.2
2020-04-08 0.1.1
2020-03-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-03 0.6.1
2022-07-18 0.6.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-08 1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-17 2.3.0
2016-01-21 2.2.1
2015-02-19 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-28 1.5.0
2016-08-27 1.0.0
2016-04-26 0.0.3
2016-03-29 0.0.2
2016-03-03 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-16 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-18 0.1.4
2020-12-03 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 1.3.0
2020-06-09 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-05 1.1.0
2023-01-11 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-19 0.5.0
2021-11-17 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-18 1.3.4
2021-08-13 1.3.2
2021-07-15 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-25 1.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-01 1.2.2
2020-02-25 1.2.1
2019-10-03 1.2.0
2018-07-24 1.1.2
2018-06-23 1.1.1
2017-11-20 1.1.0
2017-11-03 1.0.0
2017-11-03 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-02 0.4.0
2017-03-28 0.3.3
2017-03-07 0.3.0
2016-07-12 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-02 0.5.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-01 1.0.4
2019-01-24 1.0.3
2017-03-27 1.0.2
2015-08-19 1.0.1
2015-07-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-17 0.1.1
2022-06-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-18 0.0.25
2024-07-17 0.0.22
2022-08-12 0.0.18
2022-07-11 0.0.17
2022-07-08 0.0.16
2022-03-02 0.0.15
2022-01-05 0.0.14
2021-11-19 0.0.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-25 0.3.0
2018-07-05 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 0.2.5
2022-10-21 0.2.4
2022-06-27 0.2.2
2022-06-09 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-30 1.0.1
2024-06-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-11 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-12 0.9.5
2023-11-21 0.9.4.1
2023-11-17 0.9.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-09 0.4.0
2024-01-29 0.3.0
2016-12-05 0.2.0
2015-08-21 0.1.2
2012-09-09 0.1.1
2012-08-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-13 1.3
2014-08-09 1.2
2014-05-05 1.1
2014-03-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-20 2.0.0
2023-02-09 1.0.2
2022-10-20 1.0.1
2022-09-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-28 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-29 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-27 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-11 2.3
2021-03-17 2.2
2020-06-16 2.1
2018-07-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-01 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-14 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-15 0.0.3
2023-04-12 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-06 1.1.88
2014-12-02 1.1.87
2014-02-11 1.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-18 1.0.1
2017-09-04 0.9.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-20 1.15.2
2023-04-02 1.15.1
2020-06-02 1.15
2020-03-23 1.14
2020-02-28 1.13
2020-01-13 1.12
2019-01-03 1.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-24 3.2-5
2020-09-01 3.2-3
2019-03-20 3.2-2
2019-01-08 3.2-1
2018-07-25 3.2-0
2017-10-05 3.1-5
2017-04-21 3.1-4
2017-03-16 3.1-3
2017-01-09 3.1-2
2016-12-20 3.1-1
2016-08-11 3.0-0
2016-02-22 2.4-1
2015-03-04 2.4-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-24 1.1.3
2019-07-02 1.1.2
2018-07-14 1.1.1
2017-09-25 1.1.0
2017-07-23 1.0.0
2016-10-09 0.7.0
2016-09-13 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 0.1.4
2021-04-16 0.1.3
2018-04-21 0.1.2
2018-02-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-20 0.9.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-28 1.0.2
2022-01-07 1.0.1
2021-06-14 1.0.0
2020-10-29 0.4.10
2020-02-23 0.4.9
2020-01-13 0.4.8
2019-09-08 0.4.7
2019-07-27 0.4.6
2018-09-10 0.4.5
2017-12-18 0.4.3
2017-10-19 0.4.2
2017-06-26 0.4.1
2017-04-12 0.4.0
2017-04-07 0.3.22
2016-10-31 0.3.18
2016-04-14 0.3.16
2015-09-15 0.3.15
2015-04-27 0.3.10
2015-03-17 0.3.9
2014-10-10 0.3.3
2014-10-01 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-14 0.1.1
2020-11-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-10 0.1.11
2022-02-22 0.1.9
2021-12-06 0.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-20 0.3.0
2016-11-05 0.2
2014-05-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-07 0.2.5
2020-02-29 0.2.4
2019-07-01 0.2.3-1
2019-06-29 0.2.3
2018-07-15 0.2.2
2017-04-03 0.2.0
2016-11-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-01 3.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-29 1.2.4
2019-02-04 1.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-19 2.3.1
2023-10-13 2.3.0
2022-06-15 2.2.0
2021-06-17 2.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-21 1.2.1
2021-04-27 1.2.0
2021-03-15 1.1.9
2020-08-07 1.1.8
2020-05-04 1.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-25 0.9.2
2021-06-28 0.9.1
2021-02-07 0.8.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-22 0.1.1
2024-05-13 0.1.0
2024-03-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-12 0.6.3
2020-07-16 0.6.2
2020-05-27 0.6.1
2020-04-02 0.6.0
2020-03-06 0.5.9
2019-06-14 0.5.7
2019-03-22 0.5.2
2019-03-21 0.5.0
2018-06-14 0.4
2018-04-19 0.3
2018-03-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-19 1.2.0
2021-07-01 1.1.0
2021-01-21 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-16 0.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-09 1.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-01 1.5
2022-05-23 1.4
2022-05-18 1.3
2022-04-15 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-01 0.0.5
2021-02-13 0.0.4
2020-12-10 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-19 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-13 0.0.2
Title: A Magical Framework for Collaborative & Reproducible Data
Analysis
Description: A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing and modifying NIH Data Archive ('NDA') data structures and submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.
Author: Joshua G. Kenney [aut, cre],
Trevor F. Williams [aut],
Minerva K. Pappu [aut],
Michael J. Spilka [aut],
Danielle N. Pratt [ctb],
Victor J. Pokorny [ctb],
Santiago Castiello de Obeso [ctb],
Praveen Suthaharan [ctb],
Christian R. Horgan [ctb]
Maintainer: Joshua G. Kenney <joshua.kenney@yale.edu>
Diff between wizaRdry versions 0.2.6 dated 2025-06-17 and 0.5.0 dated 2025-11-07
DESCRIPTION | 15 MD5 | 103 +- NAMESPACE | 16 R/ConfigEnv.R | 60 + R/SecretsEnv.R | 121 +-- R/checkColumnPrefix.R | 18 R/checkInterviewAge.R | 35 R/checkQualtricsDuplicates.R | 33 R/cleanDataFrameExists.R | 19 R/createCsv.R | 14 R/createNda.R | 4 R/createNdaDataDefinition.R |only R/createNdaSubmissionTemplate.R |only R/createRda.R | 14 R/createSpss.R | 15 R/dataFilter.R | 11 R/dataMerge.R | 9 R/dataParse.R | 6 R/dataRequest.R | 43 - R/deprecated.R |only R/getMongo.R | 506 ++++++------- R/getOracle.R |only R/getQualtrics.R | 287 +++++-- R/getRedcap.R | 88 +- R/getSql.R |only R/ndaRequest.R | 890 +++++++++++++++++++++-- R/ndaRequiredVariablesExist.R | 31 R/ndaValidator.R | 1502 ++++++++++++++++++++++++++++++++++++++-- R/processCaprData.R | 200 ++++- R/scry.R | 87 +- R/testSuite.R | 16 R/zzz.R | 3 man/createCsv.Rd | 18 man/createRds.Rd | 18 man/createSpss.Rd | 18 man/dataFilter.Rd | 84 -- man/dataMerge.Rd | 27 man/dataRequest.Rd | 17 man/getRedcap.Rd | 40 - man/getSurvey.Rd | 22 man/getTask.Rd | 28 man/mongo.Rd | 14 man/mongo.index.Rd | 4 man/ndaRequest.Rd | 24 man/oracle.Rd |only man/oracle.desc.Rd |only man/oracle.index.Rd |only man/oracle.query.Rd |only man/oracle.test.Rd |only man/qualtrics.index.Rd | 15 man/redcap.Rd | 4 man/redcap.rune.Rd | 4 man/scry.Rd | 2 man/sql.Rd |only man/sql.desc.Rd |only man/sql.index.Rd |only man/sql.query.Rd |only man/to.nda.Rd | 41 + man/wizaRdry-deprecated.Rd |only man/wizaRdry-package.Rd | 2 60 files changed, 3495 insertions(+), 1033 deletions(-)
Title: Salary Analysis by the Swiss Federal Office for Gender Equality
Description: Implementation of the Swiss Confederation's standard analysis
model for salary analyses
<www.ebg.admin.ch/en/equal-pay-analysis-with-logib> in R. The
analysis is run at company-level and the model is intended for
medium-sized and large companies. It can technically be used with 50
or more employees (apprentices, trainees/interns and expats are not
included in the analysis). Employees with at least 100 employees are
required by the Gender Equality Act to conduct an equal pay analysis.
This package allows users to run the equal salary analysis in R,
providing additional transparency with respect to the methodology and
simple automation possibilities.
Author: Marc Stoeckli [aut, cre],
Silvia Strub [ctb],
Jonathan Chassot [aut],
Jeremy Kolly [aut],
Federal Office for Gender Equality of Switzerland [cph, fnd]
Maintainer: Marc Stoeckli <marc.stoeckli@ebg.admin.ch>
Diff between logib versions 0.2.0 dated 2024-12-20 and 0.2.1 dated 2025-11-07
DESCRIPTION | 16 +- MD5 | 30 ++--- NEWS.md | 8 + R/analysis.R | 36 ++++-- R/data.R | 6 - R/data_check.R | 22 ++- R/data_preparation.R | 122 +++++++++++++++------- R/datalists.R | 6 - README.md | 2 data/datalist_example.rda |binary man/datalist_example.Rd | 6 - tests/testthat/Beispiel_Datenblatt_M1.xlsx |binary tests/testthat/Esempio_foglio_di_dati_M1.xlsx |binary tests/testthat/Example_data_sheet_M1.xlsx |binary tests/testthat/Exemple_feuille_de_donnees_M1.xlsx |binary tests/testthat/test-analysis.R | 21 +-- 16 files changed, 175 insertions(+), 100 deletions(-)
Title: G-Formula for Causal Inference via Multiple Imputation
Description: Implements the G-Formula method for causal inference with time-varying treatments and
confounders using Bayesian multiple imputation methods, as described by
Bartlett et al (2025) <doi:10.1177/09622802251316971>. It creates multiple synthetic imputed
datasets under treatment regimes of interest using the 'mice' package. These can then be analysed
using rules developed for analysing multiple synthetic datasets.
Author: Jonathan Bartlett [aut, cre] ,
Camila Olarte Parra [ctb] ,
Erik van Zwet [ctb]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between gFormulaMI versions 1.0.2 dated 2025-07-03 and 1.0.3 dated 2025-11-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/gFormulaImpute.R | 2 +- inst/doc/gFormulaMI.Rmd | 4 ++-- inst/doc/gFormulaMI.html | 20 +++++++++++--------- man/gFormulaImpute.Rd | 2 +- vignettes/gFormulaMI.Rmd | 4 ++-- 8 files changed, 31 insertions(+), 25 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-07 0.2.2
2025-10-26 0.2.1
2025-10-22 0.2
Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and
'Bibentry'. Includes a port of the 'bibutils' utilities by Chris
Putnam <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] , comment.ORCID: 0000-0003-2839-346X),
Chris Putman [aut] ,
Richard Mathar [ctb] ,
Johannes Wilm [ctb] ,
R Core Team [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.3 dated 2024-10-04 and 2.4 dated 2025-11-07
rbibutils-2.3/rbibutils/inst/bib/Putnam1992.end |only rbibutils-2.3/rbibutils/tests/testthat/test-convert.Rsav |only rbibutils-2.4/rbibutils/DESCRIPTION | 12 rbibutils-2.4/rbibutils/MD5 | 175 - rbibutils-2.4/rbibutils/NAMESPACE | 61 rbibutils-2.4/rbibutils/NEWS.md | 822 +++-- rbibutils-2.4/rbibutils/R/bib.R | 627 ++-- rbibutils-2.4/rbibutils/R/bibentry.R | 1419 +++++----- rbibutils-2.4/rbibutils/R/convert.R | 126 rbibutils-2.4/rbibutils/R/import.R | 152 - rbibutils-2.4/rbibutils/R/zzz.R | 31 rbibutils-2.4/rbibutils/build/partial.rdb |binary rbibutils-2.4/rbibutils/build/vignette.rds |binary rbibutils-2.4/rbibutils/inst/bib/00README.org | 8 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE2.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE2_e.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE4.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE5.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE5_e.bib | 2 rbibutils-2.4/rbibutils/inst/bib/Cousquer_1991_PCE_e.bib | 2 rbibutils-2.4/rbibutils/inst/bib/WuertzEtalGarch.bib | 20 rbibutils-2.4/rbibutils/inst/bib/latin1accents_utf8.bib | 18 rbibutils-2.4/rbibutils/inst/bib/litprog280.bib | 13 rbibutils-2.4/rbibutils/inst/bib/litprog280macros_only.bib | 13 rbibutils-2.4/rbibutils/inst/doc/rbibutils.R | 154 - 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Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Cross Validation and similar, or using iterated nested Laplace
approximation for fully Bayesian inference. See Wood (2025)
<doi:10.1146/annurev-statistics-112723-034249> for an overview.
Includes a gam() function, a wide variety of smoothers, 'JAGS'
support and distributions beyond the exponential family.
Author: Simon Wood [aut, cre]
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.9-3 dated 2025-04-04 and 1.9-4 dated 2025-11-07
mgcv-1.9-3/mgcv/man/full.score.Rd |only mgcv-1.9-4/mgcv/ChangeLog | 54 mgcv-1.9-4/mgcv/DESCRIPTION | 18 mgcv-1.9-4/mgcv/MD5 | 150 - mgcv-1.9-4/mgcv/NAMESPACE | 28 mgcv-1.9-4/mgcv/R/bam.r | 65 mgcv-1.9-4/mgcv/R/deprecated.r |only mgcv-1.9-4/mgcv/R/efam.r | 1385 ++++++++++++++++- mgcv-1.9-4/mgcv/R/fast-REML.r | 4 mgcv-1.9-4/mgcv/R/gam.fit3.r | 6 mgcv-1.9-4/mgcv/R/gam.fit4.r | 13 mgcv-1.9-4/mgcv/R/gamlss.r | 205 +- mgcv-1.9-4/mgcv/R/gfam.r | 2 mgcv-1.9-4/mgcv/R/jagam.r | 2 mgcv-1.9-4/mgcv/R/mgcv.r | 564 ++---- mgcv-1.9-4/mgcv/R/misc.r | 28 mgcv-1.9-4/mgcv/R/plots.r | 218 +- mgcv-1.9-4/mgcv/R/scasm.r |only mgcv-1.9-4/mgcv/R/smooth.r | 9 mgcv-1.9-4/mgcv/R/soap.r | 32 mgcv-1.9-4/mgcv/man/NCV.Rd | 2 mgcv-1.9-4/mgcv/man/Predict.matrix.soap.film.Rd | 15 mgcv-1.9-4/mgcv/man/Tweedie.Rd | 3 mgcv-1.9-4/mgcv/man/bam.Rd | 2 mgcv-1.9-4/mgcv/man/bam.update.Rd | 5 mgcv-1.9-4/mgcv/man/bcg.Rd |only mgcv-1.9-4/mgcv/man/choose.k.Rd | 1 mgcv-1.9-4/mgcv/man/concurvity.Rd | 4 mgcv-1.9-4/mgcv/man/dpnorm.Rd | 3 mgcv-1.9-4/mgcv/man/dppois.Rd |only mgcv-1.9-4/mgcv/man/exclude.too.far.Rd | 4 mgcv-1.9-4/mgcv/man/extract.lme.cov.Rd | 2 mgcv-1.9-4/mgcv/man/family.mgcv.Rd | 2 mgcv-1.9-4/mgcv/man/formXtViX.Rd | 2 mgcv-1.9-4/mgcv/man/gam.Rd | 19 mgcv-1.9-4/mgcv/man/gam.check.Rd | 2 mgcv-1.9-4/mgcv/man/gam.control.Rd | 7 mgcv-1.9-4/mgcv/man/gam.fit.Rd | 4 mgcv-1.9-4/mgcv/man/gam.fit3.Rd | 4 mgcv-1.9-4/mgcv/man/gam.outer.Rd | 5 mgcv-1.9-4/mgcv/man/gam.selection.Rd | 3 mgcv-1.9-4/mgcv/man/gam.vcomp.Rd | 38 mgcv-1.9-4/mgcv/man/gam2objective.Rd | 2 mgcv-1.9-4/mgcv/man/gamm.Rd | 1 mgcv-1.9-4/mgcv/man/gammals.Rd | 4 mgcv-1.9-4/mgcv/man/gaulss.Rd | 2 mgcv-1.9-4/mgcv/man/get.var.Rd | 4 mgcv-1.9-4/mgcv/man/gumbls.Rd | 2 mgcv-1.9-4/mgcv/man/in.out.Rd | 4 mgcv-1.9-4/mgcv/man/inSide.Rd | 16 mgcv-1.9-4/mgcv/man/interpret.gam.Rd | 3 mgcv-1.9-4/mgcv/man/k.check.Rd | 1 mgcv-1.9-4/mgcv/man/ls.size.Rd | 4 mgcv-1.9-4/mgcv/man/magic.Rd | 1 mgcv-1.9-4/mgcv/man/mgcv-package.Rd | 13 mgcv-1.9-4/mgcv/man/mono.con.Rd | 1 mgcv-1.9-4/mgcv/man/new.name.Rd | 4 mgcv-1.9-4/mgcv/man/notExp.Rd | 4 mgcv-1.9-4/mgcv/man/notExp2.Rd | 5 mgcv-1.9-4/mgcv/man/null.space.dimension.Rd | 1 mgcv-1.9-4/mgcv/man/pcls.Rd | 15 mgcv-1.9-4/mgcv/man/pdIdnot.Rd | 2 mgcv-1.9-4/mgcv/man/pdTens.Rd | 2 mgcv-1.9-4/mgcv/man/place.knots.Rd | 4 mgcv-1.9-4/mgcv/man/plot.gam.Rd | 39 mgcv-1.9-4/mgcv/man/predict.gam.Rd | 4 mgcv-1.9-4/mgcv/man/print.gam.Rd | 3 mgcv-1.9-4/mgcv/man/qq.gam.Rd | 1 mgcv-1.9-4/mgcv/man/random.effects.Rd | 10 mgcv-1.9-4/mgcv/man/rig.Rd | 1 mgcv-1.9-4/mgcv/man/s.Rd | 6 mgcv-1.9-4/mgcv/man/scasm.Rd |only mgcv-1.9-4/mgcv/man/smooth.construct.Rd | 1 mgcv-1.9-4/mgcv/man/smooth.construct.ad.smooth.spec.Rd | 5 mgcv-1.9-4/mgcv/man/smooth.construct.bs.smooth.spec.Rd | 9 mgcv-1.9-4/mgcv/man/smooth.construct.so.smooth.spec.Rd | 2 mgcv-1.9-4/mgcv/man/smooth.terms.Rd | 2 mgcv-1.9-4/mgcv/man/smoothCon.Rd | 4 mgcv-1.9-4/mgcv/man/te.Rd | 5 79 files changed, 2201 insertions(+), 896 deletions(-)
Title: Pointcloud Interactive Computation
Description: Provides advanced algorithms for analyzing pointcloud data from terrestrial laser scanner in
forestry applications. Key features include fast voxelization of
large datasets; segmentation of point clouds into forest floor,
understorey, canopy, and wood components. The package enables
efficient processing of large-scale forest pointcloud data, offering
insights into forest structure, connectivity, and fire risk
assessment. Algorithms to analyze pointcloud data (.xyz input file).
For more details, see Ferrara & Arrizza (2025) <https://hdl.handle.net/20.500.14243/533471>.
For single tree segmentation details, see Ferrara et al. (2018)
<doi:10.1016/j.agrformet.2018.04.008>.
Author: Roberto Ferrara [aut, cre] ,
Stefano Arrizza [ctb]
Maintainer: Roberto Ferrara <roberto.ferrara@cnr.it>
Diff between PiC versions 1.2.6 dated 2025-10-11 and 1.2.7 dated 2025-11-07
PiC-1.2.6/PiC/R/SegOne.R |only PiC-1.2.7/PiC/DESCRIPTION | 6 PiC-1.2.7/PiC/MD5 | 26 +- PiC-1.2.7/PiC/NAMESPACE | 3 PiC-1.2.7/PiC/NEWS.md | 72 +++++++ PiC-1.2.7/PiC/R/Floseg.R | 41 ++-- PiC-1.2.7/PiC/R/SegOne_v4_1_2.R |only PiC-1.2.7/PiC/R/Voxels.R | 8 PiC-1.2.7/PiC/R/globals.R | 22 ++ PiC-1.2.7/PiC/README.md | 253 ++++++++++++++++++++++++++- PiC-1.2.7/PiC/man/Floseg.Rd | 2 PiC-1.2.7/PiC/man/SegOne.Rd | 271 +++++++++++++++++++++++++++-- PiC-1.2.7/PiC/tests/testthat/test-Floseg.R | 4 PiC-1.2.7/PiC/tests/testthat/test-SegOne.R | 118 +++++------- PiC-1.2.7/PiC/tests/testthat/test-voxel.R | 110 ++++++----- 15 files changed, 768 insertions(+), 168 deletions(-)
Title: Extended Structural Equation Modelling
Description: Create structural equation models that can be manipulated programmatically.
Models may be specified with matrices or paths (LISREL or RAM)
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares.
equations, state space, and many others.
Support and advanced package binaries available at <https://openmx.ssri.psu.edu>.
The software is described in Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
[...truncated...]
Maintainer: Robert M. Kirkpatrick <rkirkpatrick2@vcu.edu>
Diff between OpenMx versions 2.22.9 dated 2025-08-20 and 2.22.10 dated 2025-11-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/MxVersion.R | 2 +- build/stage23.rdb |binary inst/doc/deriv.html | 16 ++++++++-------- inst/doc/factor_analysis.html | 12 ++++++------ inst/doc/reg_mimic.html | 10 +++++----- inst/doc/regularization.html | 2 +- 8 files changed, 33 insertions(+), 33 deletions(-)
Title: Predicted Values and Discrete Changes for Regression Models
Description: Functions to calculate predicted values and the difference between
the two cases with confidence interval for lm() [linear model], glm() [generalized linear model], glm.nb() [negative binomial model],
polr() [ordinal logistic model], vglm() [generalized ordinal logistic model], multinom() [multinomial model], tobit() [tobit model],
svyglm() [survey-weighted generalised linear models] and lmer() [linear multilevel models] using Monte Carlo simulations or bootstrap. Reference: Bennet A. Zelner (2009) <doi:10.1002/smj.783>.
Author: Benjamin E. Schlegel [aut, cre]
Maintainer: Benjamin E. Schlegel <kontakt@benjaminschlegel.ch>
Diff between glm.predict versions 4.3-0 dated 2024-01-15 and 4.3-2 dated 2025-11-07
DESCRIPTION | 19 ++++++++++----- MD5 | 50 ++++++++++++++++++++-------------------- R/basepredict.glm.R | 7 ++++- R/basepredict.lm.R | 8 +++++- R/basepredict.lmerMod.R | 7 ++++- R/basepredict.mlogit.R | 12 +++++++-- R/basepredict.multinom.R | 8 +++++- R/basepredict.polr.R | 7 ++++- R/basepredict.vglm.R | 9 +++++-- R/dc.glm.R | 7 ++++- R/dc.lm.R | 7 ++++- R/dc.lmerMod.R | 7 ++++- R/dc.mlogit.R | 11 +++++++- R/dc.multinom.R | 8 +++++- R/dc.polr.R | 7 ++++- R/dc.vglm.R | 9 +++++-- R/getBaseCombinations.R | 52 ++++++++++++++++++++++++++++++++--------- R/getCombinations.R | 6 ++-- R/getProducts.R | 4 ++- R/getValues.R | 25 +++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/glm.predict.html | 57 +++++++++++++++++++++++----------------------- man/basepredict.mlogit.Rd | 12 ++++----- man/dc.mlogit.Rd | 18 ++++++-------- man/predicts.Rd | 1 26 files changed, 246 insertions(+), 112 deletions(-)
Title: Bayesian Hierarchical Modelling of Spatio-Temporal Health Data
Description: Supports modeling health outcomes using Bayesian hierarchical
spatio-temporal models with complex covariate effects (e.g., linear,
non-linear, interactions, distributed lag linear and non-linear
models) in the 'INLA' framework. It is designed to help users identify key
drivers and predictors of disease risk by enabling streamlined model
exploration, comparison, and visualization of complex covariate effects.
See an application of the modelling framework in Lowe, Lee, O'Reilly et al. (2021)
<doi:10.1016/S2542-5196(20)30292-8>.
Author: Carles Mila [aut, cre] ,
Giovenale Moirano [aut] ,
Anna B. Kawiecki [aut] ,
Rachel Lowe [aut]
Maintainer: Carles Mila <carles.milagarcia@bsc.es>
Diff between GHRmodel versions 0.1.0 dated 2025-10-21 and 0.1.1 dated 2025-11-07
DESCRIPTION | 6 - MD5 | 32 +++---- NEWS.md | 6 + R/plot_coef_crosspred.R | 164 ++++++++++++++++++++++++++++---------- README.md | 18 +++- build/vignette.rds |binary inst/doc/GHRmodel_DLNM.R | 7 - inst/doc/GHRmodel_DLNM.Rmd | 17 ++- inst/doc/GHRmodel_DLNM.html | 22 ++--- inst/doc/GHRmodel_covariates.Rmd | 4 inst/doc/GHRmodel_covariates.html | 4 inst/doc/GHRmodel_overview.Rmd | 14 +-- inst/doc/GHRmodel_overview.html | 14 +-- man/GHRmodel-package.Rd | 2 vignettes/GHRmodel_DLNM.Rmd | 17 ++- vignettes/GHRmodel_covariates.Rmd | 4 vignettes/GHRmodel_overview.Rmd | 14 +-- 17 files changed, 223 insertions(+), 122 deletions(-)
Title: Motif Discovery in Functional Data
Description: Efficiently implementing two complementary methodologies for discovering motifs in functional data: ProbKMA and FunBIalign.
Cremona and Chiaromonte (2023) "Probabilistic K-means with Local Alignment for Clustering and Motif Discovery in Functional Data" <doi:10.1080/10618600.2022.2156522> is a probabilistic K-means algorithm that leverages local alignment and fuzzy clustering to identify recurring patterns (candidate functional motifs) across and within curves, allowing different portions of the same curve to belong to different clusters. It includes a family of distances and a normalization to discover various motif types and learns motif lengths in a data-driven manner. It can also be used for local clustering of misaligned data.
Di Iorio, Cremona, and Chiaromonte (2023) "funBIalign: A Hierarchical Algorithm for Functional Motif Discovery Based on Mean Squared Residue Scores" <doi:10.48550/arXiv.2306.04254> applies hierarchical agglomerative clustering with a functional g [...truncated...]
Author: Marzia Angela Cremona [aut],
Francesca Chiaromonte [aut],
Jacopo Di Iorio [aut, cre],
Niccolo Feresini [aut],
Riccardo Lazzarini [aut]
Maintainer: Jacopo Di Iorio <jacopo.di.iorio@emory.edu>
Diff between funMoDisco versions 1.0.0 dated 2025-04-15 and 1.1.0 dated 2025-11-07
funMoDisco-1.0.0/funMoDisco/R/shiny.R |only funMoDisco-1.0.0/funMoDisco/man/motifSimulationApp.Rd |only funMoDisco-1.1.0/funMoDisco/DESCRIPTION | 16 funMoDisco-1.1.0/funMoDisco/MD5 | 74 - funMoDisco-1.1.0/funMoDisco/NAMESPACE | 114 + funMoDisco-1.1.0/funMoDisco/R/S4_constructor.R | 348 +++++ funMoDisco-1.1.0/funMoDisco/R/S4_methods.R | 400 +++++- funMoDisco-1.1.0/funMoDisco/R/S4_utilities.R | 35 funMoDisco-1.1.0/funMoDisco/R/cluster_candidate_motifs.R | 4 funMoDisco-1.1.0/funMoDisco/R/compare_nodes.R | 2 funMoDisco-1.1.0/funMoDisco/R/discoverMotifs.R | 403 ++++-- funMoDisco-1.1.0/funMoDisco/R/find_recommended_path.R | 8 funMoDisco-1.1.0/funMoDisco/R/funMoDisco-pkg.R | 2 funMoDisco-1.1.0/funMoDisco/R/get_parents.R | 2 funMoDisco-1.1.0/funMoDisco/R/get_path_complete.R | 23 funMoDisco-1.1.0/funMoDisco/R/padding.R | 2 funMoDisco-1.1.0/funMoDisco/R/probKMA_plot.R | 586 +++++----- funMoDisco-1.1.0/funMoDisco/R/probKMA_silhouette_plot.R | 1 funMoDisco-1.1.0/funMoDisco/R/recommend_node.R | 2 funMoDisco-1.1.0/funMoDisco/build/partial.rdb |binary funMoDisco-1.1.0/funMoDisco/build/vignette.rds |binary funMoDisco-1.1.0/funMoDisco/man/discoverMotifs.Rd | 110 - funMoDisco-1.1.0/funMoDisco/man/dot-generate_coefficients.Rd | 5 funMoDisco-1.1.0/funMoDisco/man/generateCurves-motifSimulation-method.Rd | 13 funMoDisco-1.1.0/funMoDisco/man/generateCurves.Rd | 7 funMoDisco-1.1.0/funMoDisco/man/motifSimulationBuilder.Rd | 9 funMoDisco-1.1.0/funMoDisco/man/plot_motifs-motifSimulation-method.Rd | 5 funMoDisco-1.1.0/funMoDisco/man/plot_motifs.Rd | 8 funMoDisco-1.1.0/funMoDisco/man/to_motifDiscovery-list-method.Rd | 3 funMoDisco-1.1.0/funMoDisco/man/to_motifDiscovery.Rd | 7 funMoDisco-1.1.0/funMoDisco/src/Makevars | 16 funMoDisco-1.1.0/funMoDisco/src/Makevars.win | 3 funMoDisco-1.1.0/funMoDisco/src/SobolDiss.cpp | 4 funMoDisco-1.1.0/funMoDisco/src/include/Dissimilarity.hpp | 1 funMoDisco-1.1.0/funMoDisco/src/include/Motif.hpp | 1 funMoDisco-1.1.0/funMoDisco/src/include/Motif.ipp | 42 funMoDisco-1.1.0/funMoDisco/src/include/ProbKMA.hpp | 1 funMoDisco-1.1.0/funMoDisco/src/include/Utilities.hpp | 17 funMoDisco-1.1.0/funMoDisco/src/probKMAImpl.cpp | 70 - 39 files changed, 1551 insertions(+), 793 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Procedures are available for choosing models that
conform to the hierarchy or marginality principle, for fitting and choosing between
two-dimensional spatial models using correlation, natural cubic smoothing spline and
P-spline models. A history of the fitting of a sequence of models is kept in a data frame.
Also used to compute functions and contrasts of, to investigate differences between and
to plot predictions obtained using any model fitting function. The content falls into
the following natural groupings: (i) Data, (ii) Model modification functions, (iii) Model
selection and description functions, (iv) Model diagnostics and simulation functions,
(v) Prediction production and presentation functions, (vi) Response transformation
functions, (vii) Object manipulation functions, and (viii) Miscellaneous functions
(for further details see 'asremlPlus-package' in help). The [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.4.51 dated 2025-08-21 and 4.4.55 dated 2025-11-07
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Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.3.1 dated 2025-10-09 and 1.4.0 dated 2025-11-07
visOmopResults-1.3.1/visOmopResults/man/tableStyleCode.Rd |only visOmopResults-1.4.0/visOmopResults/DESCRIPTION | 8 visOmopResults-1.4.0/visOmopResults/MD5 | 130 visOmopResults-1.4.0/visOmopResults/NAMESPACE | 1 visOmopResults-1.4.0/visOmopResults/NEWS.md | 103 visOmopResults-1.4.0/visOmopResults/R/datatableInternal.R | 26 visOmopResults-1.4.0/visOmopResults/R/documentationHelper.R | 45 visOmopResults-1.4.0/visOmopResults/R/formatTable.R | 59 visOmopResults-1.4.0/visOmopResults/R/fxTable.R | 7 visOmopResults-1.4.0/visOmopResults/R/gtTable.R | 13 visOmopResults-1.4.0/visOmopResults/R/helperFunctions.R | 44 visOmopResults-1.4.0/visOmopResults/R/plot.R | 62 visOmopResults-1.4.0/visOmopResults/R/plottingThemes.R | 213 visOmopResults-1.4.0/visOmopResults/R/reactableInternal.R | 40 visOmopResults-1.4.0/visOmopResults/R/styles.R |only visOmopResults-1.4.0/visOmopResults/R/tidy.R | 132 visOmopResults-1.4.0/visOmopResults/R/tinyTable.R | 9 visOmopResults-1.4.0/visOmopResults/R/utilities.R | 117 visOmopResults-1.4.0/visOmopResults/R/visOmopTable.R | 15 visOmopResults-1.4.0/visOmopResults/R/visTable.R | 73 visOmopResults-1.4.0/visOmopResults/build/vignette.rds |binary visOmopResults-1.4.0/visOmopResults/inst/brand |only visOmopResults-1.4.0/visOmopResults/inst/createMockReportData.R | 138 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.R | 231 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.Rmd | 440 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.html | 5676 +++++----- visOmopResults-1.4.0/visOmopResults/inst/doc/a02_plots.Rmd | 592 - visOmopResults-1.4.0/visOmopResults/inst/doc/a02_plots.html | 20 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.R | 1 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.Rmd | 539 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.html | 15 visOmopResults-1.4.0/visOmopResults/inst/doc/a04_shiny_apps.Rmd | 738 - visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.R |only visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.Rmd |only visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.html |only visOmopResults-1.4.0/visOmopResults/man/barPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/boxPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/emptyPlot.Rd | 17 visOmopResults-1.4.0/visOmopResults/man/emptyTable.Rd | 24 visOmopResults-1.4.0/visOmopResults/man/figures/README-unnamed-chunk-5-1.png |binary visOmopResults-1.4.0/visOmopResults/man/figures/README-unnamed-chunk-6-1.png |binary visOmopResults-1.4.0/visOmopResults/man/formatTable.Rd | 33 visOmopResults-1.4.0/visOmopResults/man/plotDoc.Rd | 20 visOmopResults-1.4.0/visOmopResults/man/scatterPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/setGlobalPlotOptions.Rd | 17 visOmopResults-1.4.0/visOmopResults/man/setGlobalTableOptions.Rd | 25 visOmopResults-1.4.0/visOmopResults/man/tableDoc.Rd | 25 visOmopResults-1.4.0/visOmopResults/man/themeVisOmop.Rd | 12 visOmopResults-1.4.0/visOmopResults/man/visOmopTable.Rd | 29 visOmopResults-1.4.0/visOmopResults/man/visTable.Rd | 29 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/datatableInternal.md | 5 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/formatTable.md | 2 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/reactableInternal.md | 16 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/tinyTable.md | 8 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-datatableInternal.R | 3 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-formatTable.R | 133 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-fxTable.R | 47 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-gtTable.R | 160 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-helperFunctions.R | 177 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-plot.R | 2 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-reactableInternal.R | 4 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-tinyTable.R | 6 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-visOmopTable.R | 36 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-visTable.R | 15 visOmopResults-1.4.0/visOmopResults/vignettes/a01_tables.Rmd | 440 visOmopResults-1.4.0/visOmopResults/vignettes/a02_plots.Rmd | 592 - visOmopResults-1.4.0/visOmopResults/vignettes/a03_quarto_reports.Rmd | 539 visOmopResults-1.4.0/visOmopResults/vignettes/a04_shiny_apps.Rmd | 738 - visOmopResults-1.4.0/visOmopResults/vignettes/a05_style.Rmd |only 69 files changed, 6658 insertions(+), 6061 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
Author: Hajk-Georg Drost [aut, cre] ,
Stefan Manolache [aut, ctb] ,
Jaruwatana Sodai Lotharukpong [aut, ctb] ,
Nikola Kalabova [aut, ctb] ,
Filipa Martins Costa [aut, ctb],
Kristian K Ullrich [aut, ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
This is a re-admission after prior archival of version 0.9.3 dated 2021-02-24
Diff between myTAI versions 0.9.3 dated 2021-02-24 and 2.3.3 dated 2025-11-07
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Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.6.3 dated 2025-10-10 and 1.6.4 dated 2025-11-07
DESCRIPTION | 8 MD5 | 88 R/GPModel.R | 306 +-- R/gpb.Booster.R | 27 R/gpb.plot.partial.dependence.R | 22 README.md | 4 configure.ac | 2 demo/GPBoost_algorithm.R | 10 demo/compare_usage_lme4_gpboost.R | 8 demo/examples_in_R_package_documentation.R | 14 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 95 - man/GPModel.Rd | 5 man/GPModel_shared_params.Rd | 13 man/fit.GPModel.Rd | 8 man/fit.Rd | 4 man/fitGPModel.Rd | 19 man/get_coef.GPModel.Rd | 8 man/get_coef.Rd | 8 man/get_cov_pars.GPModel.Rd | 8 man/get_cov_pars.Rd | 8 man/get_nested_categories.Rd | 2 man/gpb.plot.part.dep.interact.Rd | 8 man/gpb.plot.partial.dependence.Rd | 14 man/predict.GPModel.Rd | 4 man/set_optim_params.GPModel.Rd | 4 man/set_optim_params.Rd | 4 man/summary.GPModel.Rd | 4 src/CG_utils.cpp | 12 src/c_api.cpp | 34 src/gpboost_R.cpp | 35 src/gpboost_R.h | 29 src/include/GPBoost/cov_fcts.h | 49 src/include/GPBoost/likelihoods.h | 158 + src/include/GPBoost/re_comp.h | 17 src/include/GPBoost/re_model.h | 35 src/include/GPBoost/re_model_template.h | 895 +++++----- src/include/LightGBM/c_api.h | 23 src/objective/regression_objective.hpp | 20 src/re_model.cpp | 206 +- tests/testthat/_snaps |only tests/testthat/test_GPModel_combined_GP_random_effects.R | 34 tests/testthat/test_GPModel_gaussian_process.R | 693 +++---- tests/testthat/test_GPModel_grouped_random_effects.R | 158 + tests/testthat/test_GPModel_non_Gaussian_data.R | 601 +++--- tests/testthat/test_z_GPBoost_algorithm.R | 7 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 4 46 files changed, 2117 insertions(+), 1598 deletions(-)
Title: Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Description: Functions to import data from more than 30,000 surface
meteorological sites around the world managed by the National Oceanic
and Atmospheric Administration (NOAA) Integrated Surface Database
(ISD, see
<https://www.ncei.noaa.gov/products/land-based-station/integrated-surface-database>).
Author: David Carslaw [aut, cre] ,
Jack Davison [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between worldmet versions 0.10.1 dated 2025-08-20 and 0.10.2 dated 2025-11-07
DESCRIPTION | 13 +++++------ MD5 | 13 ++++++----- NEWS.md | 56 ++++++++++++++++++++++++++++++++++++++------------ R/importNOAA.R | 50 ++++++++++++++++++-------------------------- R/importNOAAlite.R | 7 ++---- R/utils.R |only man/importNOAA.Rd | 13 +++++------ man/importNOAAlite.Rd | 4 --- 8 files changed, 87 insertions(+), 69 deletions(-)
Title: Analyze Data from the Truth Commission in Colombia
Description: Facilitates use and analysis of data about the armed conflict
in Colombia resulting from the joint project between La Jurisdicción
Especial para la Paz (JEP), La Comisión para el Esclarecimiento de la
Verdad, la Convivencia y la No repetición (CEV), and the Human Rights Data
Analysis Group (HRDAG). The data are 100 replicates from a multiple
imputation through chained equations as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. With the replicates
the user can examine four human rights violations that occurred in the
Colombian conflict accounting for the impact of missing fields and fully
missing observations.
Author: Maria Gargiulo [aut, cre],
Maria Juliana Duran [aut],
Paula Andrea Amado [aut],
Patrick Ball [rev]
Maintainer: Maria Gargiulo <mariag@hrdag.org>
Diff between verdata versions 1.0.0 dated 2025-04-24 and 1.0.1 dated 2025-11-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ README.md | 16 ++++++++++++---- build/partial.rdb |binary inst/WORDLIST | 18 ++++++++++++++++-- inst/docs/README-en.md | 20 ++++++++++++++------ tests/testthat/test-estimate_mse.R | 2 +- 8 files changed, 57 insertions(+), 23 deletions(-)
Title: Urban Centrality Index
Description: Calculates the Urban Centrality Index (UCI) as in Pereira et al.,
(2013) <doi:10.1111/gean.12002>. The UCI measures the
extent to which the spatial organization of a city or region varies
from extreme polycentric to extreme monocentric in a continuous
scale from 0 to 1. Values closer to 0 indicate more polycentric patterns
and values closer to 1 indicate a more monocentric urban form.
Author: Rafael H. M. Pereira [aut, cre]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between uci versions 0.3.0 dated 2023-09-23 and 0.3.1 dated 2025-11-07
DESCRIPTION | 12 ++++---- MD5 | 22 ++++++++-------- NEWS.md | 6 ++++ R/uci.R | 13 +++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/uci.R | 12 ++++---- inst/doc/uci.Rmd | 11 ++------ inst/doc/uci.html | 52 +++++++++++++------------------------- man/uci.Rd | 3 -- tests/tests_rafa/max_uci_sparse.R | 10 +++++-- vignettes/uci.Rmd | 11 ++------ 12 files changed, 73 insertions(+), 79 deletions(-)
Title: Estimation of the Proportion of Treatment Effect Explained by
Surrogate Outcome Information
Description: Estimates the proportion of treatment effect on a censored primary outcome that is explained by the treatment effect on a censored surrogate outcome/event. All methods are described in detail in Parast, et al (2020) "Assessing the Value of a Censored Surrogate Outcome" <doi:10.1007/s10985-019-09473-1> and Wang et al (2025) "Model-free Approach to Evaluate a Censored Intermediate Outcome as a Surrogate for Overall Survival" <doi:10.1002/sim.70268>. A tutorial for this package can be found at <https://www.laylaparast.com/surrogateoutcome>.
Author: Layla Parast [aut, cre],
Xuan Wang [aut]
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateOutcome versions 1.1 dated 2021-11-15 and 1.2 dated 2025-11-07
SurrogateOutcome-1.1/SurrogateOutcome/build |only SurrogateOutcome-1.1/SurrogateOutcome/man/SurrogateOutcome-package.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/DESCRIPTION | 15 SurrogateOutcome-1.2/SurrogateOutcome/MD5 | 12 SurrogateOutcome-1.2/SurrogateOutcome/NAMESPACE | 10 SurrogateOutcome-1.2/SurrogateOutcome/R/SurrogateOutcome.R | 452 +++++++++- SurrogateOutcome-1.2/SurrogateOutcome/man/R.opt.event.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/WEIGHT.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/WEIGHT.p.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/resam.Rd |only 10 files changed, 462 insertions(+), 27 deletions(-)
More information about SurrogateOutcome at CRAN
Permanent link
Title: SM/LM EGARCH & GARCH, VaR/ES Backtesting & Dual LM Extensions
Description: Implement and fit a variety of short-memory (SM) and long-memory
(LM) models from a very broad family of exponential generalized autoregressive
conditional heteroskedasticity (EGARCH) models, such as a MEGARCH (modified
EGARCH), FIEGARCH (fractionally integrated EGARCH), FIMLog-GARCH (fractionally
integrated modulus Log-GARCH), and more. The FIMLog-GARCH as part of the
EGARCH family is discussed in Feng et al. (2023)
<https://econpapers.repec.org/paper/pdnciepap/156.htm>. For convenience and
the purpose of comparison, a variety of other popular SM and LM GARCH-type
models, like an APARCH model, a fractionally integrated
APARCH (FIAPARCH) model, standard GARCH and fractionally integrated GARCH
(FIGARCH) models, GJR-GARCH and FIGJR-GARCH models, TGARCH and FITGARCH
models, are implemented as well as dual models with simultaneous modelling of
the mean, including dual long-memory models with a fractionally integrated
autoregressive moving average (FARIMA) model in the mean and a long [...truncated...]
Author: Dominik Schulz [aut, cre] ,
Yuanhua Feng [aut] ,
Christian Peitz [aut] ),
Oliver Kojo Ayensu [aut] ,
Thomas Gries [ctb] ,
Sikandar Siddiqui [ctb] ,
Shujie Li [ctb]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between fEGarch versions 1.0.2 dated 2025-09-11 and 1.0.3 dated 2025-11-07
fEGarch-1.0.2/fEGarch/man/fEGarch_fit-egarch_type_spec-method.Rd |only fEGarch-1.0.2/fEGarch/man/fEGarch_fit-loggarch_type_spec-method.Rd |only fEGarch-1.0.2/fEGarch/man/fEGarch_fit.Rd |only fEGarch-1.0.2/fEGarch/man/forecasting-model-methods.Rd |only fEGarch-1.0.3/fEGarch/DESCRIPTION | 6 fEGarch-1.0.3/fEGarch/MD5 | 74 ++--- fEGarch-1.0.3/fEGarch/NAMESPACE | 5 fEGarch-1.0.3/fEGarch/NEWS.md | 10 fEGarch-1.0.3/fEGarch/R/class-egarch-spec.R | 116 ++++----- fEGarch-1.0.3/fEGarch/R/distr_est.R | 6 fEGarch-1.0.3/fEGarch/R/forecasting-functions.R | 56 ++-- fEGarch-1.0.3/fEGarch/R/general_garch_fitting.R | 6 fEGarch-1.0.3/fEGarch/R/generics.R | 58 ++-- fEGarch-1.0.3/fEGarch/R/popular-methods.R | 2 fEGarch-1.0.3/fEGarch/R/sysdata.rda |binary fEGarch-1.0.3/fEGarch/R/ufRisk-functions.R | 14 - fEGarch-1.0.3/fEGarch/README.md | 120 ++++----- fEGarch-1.0.3/fEGarch/man/SP500.Rd | 50 +-- fEGarch-1.0.3/fEGarch/man/UKinflation.Rd | 52 ++-- fEGarch-1.0.3/fEGarch/man/accessor_methods_distr_est.Rd | 94 +++---- fEGarch-1.0.3/fEGarch/man/autoplot-fEGarch_risk-method.Rd | 72 ++--- fEGarch-1.0.3/fEGarch/man/backtest-generics.Rd | 82 +++--- fEGarch-1.0.3/fEGarch/man/backtest-tests.Rd | 12 fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-12-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-15-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-25-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-9-1.png |binary fEGarch-1.0.3/fEGarch/man/fit-test-generics.Rd | 126 +++++----- fEGarch-1.0.3/fEGarch/man/fit_test_suite-fEGarch_fit-method.Rd | 102 ++++---- fEGarch-1.0.3/fEGarch/man/fitted.Rd | 72 ++--- fEGarch-1.0.3/fEGarch/man/forecasting-generics.Rd | 12 fEGarch-1.0.3/fEGarch/man/loss_functions.Rd | 46 +-- fEGarch-1.0.3/fEGarch/man/mean_spec_methods.Rd | 96 +++---- fEGarch-1.0.3/fEGarch/man/measure_risk.Rd | 2 fEGarch-1.0.3/fEGarch/man/nonpar-generics.Rd | 84 +++--- fEGarch-1.0.3/fEGarch/man/plot-fEGarch_fit-ANY-method.Rd | 118 ++++----- fEGarch-1.0.3/fEGarch/man/plot-fEGarch_risk-ANY-method.Rd | 78 +++--- fEGarch-1.0.3/fEGarch/man/plot.Rd | 42 +-- fEGarch-1.0.3/fEGarch/man/residuals.Rd | 66 ++--- fEGarch-1.0.3/fEGarch/man/sigma.Rd | 72 ++--- 40 files changed, 870 insertions(+), 881 deletions(-)
Title: Risk Assessments for Ecosystems or Ecosystem Components
Description: Implementation of a modular framework for ecosystem risk assessments,
combining existing risk assessment approaches tailored to semi-quantitative and
quantitative analyses.
Author: Helene Gutte [aut, cre, cph] ,
Saskia A. Otto [aut]
Maintainer: Helene Gutte <helenegutte96@gmail.com>
Diff between ecorisk versions 0.1.1 dated 2025-05-27 and 0.2.1 dated 2025-11-07
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 15 ++++++++------- NEWS.md | 4 ++++ R/plot_heatmap.R | 12 ++++++++---- R/plot_radar.R | 11 +++++++++-- build/vignette.rds |binary man/plot_heatmap.Rd | 12 ++++++++---- man/plot_radar.Rd | 9 ++++++++- 9 files changed, 49 insertions(+), 22 deletions(-)
Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] ,
Kamran Safi [aut] ,
Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move2 versions 0.4.4 dated 2025-02-10 and 0.4.5 dated 2025-11-07
DESCRIPTION | 13 +- MD5 | 28 ++--- NEWS.md | 5 build/vignette.rds |binary inst/doc/albatross.html | 15 +- inst/doc/convert.html | 5 inst/doc/filtering_tracks.html | 43 ++++---- inst/doc/movebank.html | 85 ++++++++-------- inst/doc/programming_move2_object.html | 5 inst/doc/trajectory_analysis.R | 4 inst/doc/trajectory_analysis.Rmd | 4 inst/doc/trajectory_analysis.html | 19 ++- tests/testthat/test-mt_read_speed.R | 10 + tests/testthat/test-mt_sim_brownian_motion.R | 137 ++++++++++++++++++++------- vignettes/trajectory_analysis.Rmd | 4 15 files changed, 235 insertions(+), 142 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.4.0 dated 2025-06-04 and 1.5.0 dated 2025-11-07
DESCRIPTION | 15 ++-- MD5 | 63 ++++++++++---------- NAMESPACE | 4 + NEWS.md | 8 ++ R/CallbackAsyncTuning.R | 18 +++++ R/ObjectiveTuning.R | 2 R/TunerBatchInternal.R | 2 R/TuningInstanceAsyncMulticrit.R | 45 +++++++++++++- R/TuningInstanceAsyncSingleCrit.R | 52 ++++++++++++++-- R/mlr_callbacks.R | 4 + README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only man/callback_async_tuning.Rd | 16 ++++- man/mlr3tuning.asnyc_mlflow.Rd | 2 man/mlr_tuners_gensa.Rd | 22 +++--- man/mlr_tuners_internal.Rd | 2 man/mlr_tuners_nloptr.Rd | 29 ++------- tests/testthat/helper.R | 19 ++++++ tests/testthat/test_ArchiveAsyncTuning.R | 9 ++ tests/testthat/test_ArchiveAsyncTuningFrozen.R | 1 tests/testthat/test_AutoTuner.R | 9 +- tests/testthat/test_CallbackAsyncTuning.R | 17 +++++ tests/testthat/test_Tuner.R | 10 +-- tests/testthat/test_TunerAsyncDesignPoints.R | 1 tests/testthat/test_TunerAsyncGridSearch.R | 1 tests/testthat/test_TunerAsyncRandomSearch.R | 1 tests/testthat/test_TunerBatchIrace.R | 8 +- tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 61 +++++++++++++++++++ tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 62 +++++++++++++++++++ tests/testthat/test_error_handling.R | 25 ++----- tests/testthat/test_mlr_callbacks.R | 2 33 files changed, 396 insertions(+), 117 deletions(-)
Title: Simulation, Estimation and Reliability of Semi-Markov Models
Description: Performs parametric and non-parametric estimation and simulation
for multi-state discrete-time semi-Markov processes. For the parametric
estimation, several discrete distributions are considered for the sojourn
times: Uniform, Geometric, Poisson, Discrete Weibull and Negative Binomial.
The non-parametric estimation concerns the sojourn time distributions,
where no assumptions are done on the shape of distributions. Moreover, the
estimation can be done on the basis of one or several sample paths, with or
without censoring at the beginning or/and at the end of the sample paths.
Reliability indicators such as reliability, maintainability, availability,
BMP-failure rate, RG-failure rate, mean time to failure and mean time to
repair are available as well. The implemented methods are described in
Barbu, V.S., Limnios, N. (2008) <doi:10.1007/978-0-387-73173-5>,
Barbu, V.S., Limnios, N. (2008) <doi:10.1080/10485250701261913> and
Trevezas, S., Limnios, N. (2011) <doi:10.1080/1048 [...truncated...]
Author: Vlad Stefan Barbu [aut] ,
Florian Lecocq [aut],
Corentin Lothode [aut] ,
Nicolas Vergne [aut, cre]
Maintainer: Nicolas Vergne <nicolas.vergne@univ-rouen.fr>
Diff between smmR versions 1.0.3 dated 2021-08-03 and 1.0.5 dated 2025-11-07
smmR-1.0.3/smmR/man/aic.Rd |only smmR-1.0.3/smmR/man/bic.Rd |only smmR-1.0.3/smmR/man/loglik.Rd |only smmR-1.0.5/smmR/DESCRIPTION | 32 smmR-1.0.5/smmR/MD5 | 131 ++- smmR-1.0.5/smmR/NAMESPACE | 56 + smmR-1.0.5/smmR/R/RcppExports.R | 16 smmR-1.0.5/smmR/R/allgenerics.R | 208 +++-- smmR-1.0.5/smmR/R/convolution.R |only smmR-1.0.5/smmR/R/fit.param.f.dweibull.R | 16 smmR-1.0.5/smmR/R/fit.param.f.geom.R | 12 smmR-1.0.5/smmR/R/fit.param.f.nbinom.R | 16 smmR-1.0.5/smmR/R/fit.param.f.pois.R | 12 smmR-1.0.5/smmR/R/fit.param.fi.dweibull.R | 16 smmR-1.0.5/smmR/R/fit.param.fi.geom.R | 12 smmR-1.0.5/smmR/R/fit.param.fi.nbinom.R | 16 smmR-1.0.5/smmR/R/fit.param.fi.pois.R | 12 smmR-1.0.5/smmR/R/fit.param.fij.dweibull.R | 8 smmR-1.0.5/smmR/R/fit.param.fij.endcensoring.R | 18 smmR-1.0.5/smmR/R/fit.param.fij.geom.R | 4 smmR-1.0.5/smmR/R/fit.param.fij.nbinom.R | 8 smmR-1.0.5/smmR/R/fit.param.fij.pois.R | 4 smmR-1.0.5/smmR/R/fit.param.fj.dweibull.R | 8 smmR-1.0.5/smmR/R/fit.param.fj.endcensoring.R | 24 smmR-1.0.5/smmR/R/fit.param.fj.geom.R | 4 smmR-1.0.5/smmR/R/fit.param.fj.nbinom.R | 8 smmR-1.0.5/smmR/R/fit.param.fj.pois.R | 4 smmR-1.0.5/smmR/R/fitmm.R | 6 smmR-1.0.5/smmR/R/fitsmm.R | 11 smmR-1.0.5/smmR/R/get.H.R |only smmR-1.0.5/smmR/R/get.Niuj.R |only smmR-1.0.5/smmR/R/get.psi.R |only smmR-1.0.5/smmR/R/getProcesses.R |only smmR-1.0.5/smmR/R/matrixConvolution.R |only smmR-1.0.5/smmR/R/mm.R | 89 +- smmR-1.0.5/smmR/R/mmfit.R | 41 - smmR-1.0.5/smmR/R/processes.R | 6 smmR-1.0.5/smmR/R/smm.R | 253 +++---- smmR-1.0.5/smmR/R/smmR-package.R | 5 smmR-1.0.5/smmR/R/smmfit.R | 97 +- smmR-1.0.5/smmR/R/smmnonparametric.R | 125 ++- smmR-1.0.5/smmR/R/smmparametric.R | 110 ++- smmR-1.0.5/smmR/R/utils.R | 32 smmR-1.0.5/smmR/README.md | 122 +++ smmR-1.0.5/smmR/build/vignette.rds |binary smmR-1.0.5/smmR/inst/doc/Textile-Factory.R | 16 smmR-1.0.5/smmR/inst/doc/Textile-Factory.Rmd | 14 smmR-1.0.5/smmR/inst/doc/Textile-Factory.html | 785 +++++++++++++++------- smmR-1.0.5/smmR/inst/doc/smmR.R |only smmR-1.0.5/smmR/inst/doc/smmR.Rmd |only smmR-1.0.5/smmR/inst/doc/smmR.html |only smmR-1.0.5/smmR/man/convolution.Rd |only smmR-1.0.5/smmR/man/dot-failureRateBMP.Rd |only smmR-1.0.5/smmR/man/fitmm.Rd | 2 smmR-1.0.5/smmR/man/fitsmm.Rd | 2 smmR-1.0.5/smmR/man/get.H.Rd |only smmR-1.0.5/smmR/man/get.Kpar.Rd |only smmR-1.0.5/smmR/man/get.Niuj.Rd |only smmR-1.0.5/smmR/man/get.P.Rd |only smmR-1.0.5/smmR/man/get.Py.Rd |only smmR-1.0.5/smmR/man/get.f.Rd |only smmR-1.0.5/smmR/man/get.limitDistribution.Rd |only smmR-1.0.5/smmR/man/get.psi.Rd |only smmR-1.0.5/smmR/man/get.qy.Rd |only smmR-1.0.5/smmR/man/get.stationaryDistribution.Rd |only smmR-1.0.5/smmR/man/getKernel.Rd | 2 smmR-1.0.5/smmR/man/getProcesses.Rd |only smmR-1.0.5/smmR/man/matrixConvolution.Rd |only smmR-1.0.5/smmR/man/plot.smmfit.Rd | 26 smmR-1.0.5/smmR/man/smmR-package.Rd | 18 smmR-1.0.5/smmR/man/smmnonparametric.Rd | 1 smmR-1.0.5/smmR/src/Makevars | 1 smmR-1.0.5/smmR/src/Makevars.win | 1 smmR-1.0.5/smmR/src/RcppExports.cpp | 39 - smmR-1.0.5/smmR/src/utils.cpp | 66 - smmR-1.0.5/smmR/tests |only smmR-1.0.5/smmR/vignettes/Textile-Factory.Rmd | 14 smmR-1.0.5/smmR/vignettes/smmR.Rmd |only smmR-1.0.5/smmR/vignettes/smmR.tex |only 79 files changed, 1666 insertions(+), 863 deletions(-)
Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with several popular GUIs: 'Rgui', 'RStudio', 'Positron',
'VSCode', 'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible
with several functions and packages: 'source()',
'sys.source()', 'debugSource()' in 'RStudio',
'compiler::loadcmp()', 'utils::Sweave()', 'box::use()',
'knitr::knit()', 'plumber::plumb()', 'shiny::runApp()',
'package:targets', and 'testthat::source_file()'.
Author: Iris Simmons [aut, cre]
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.7.0 dated 2025-04-10 and 2.7.1 dated 2025-11-07
DESCRIPTION | 8 +-- MD5 | 46 ++++++++++----------- NEWS | 14 ++++++ R/ns-hooks.R | 85 ++++++++++++++++++++++++++++++++++------ R/promises.R | 5 -- R/thispath.R | 24 +++++------ build/stage23.rdb |binary build/this.path.pdf |binary configure | 2 configure.win | 2 inst/NEWS.in.Rd | 14 ++++++ man/ext.Rd | 4 - man/is.main.Rd | 35 +++++++++------- man/progArgs.Rd | 12 +++-- man/set.gui.path.Rd | 2 man/shFILE.Rd | 10 ++-- man/this.path.Rd | 16 ++++--- src/backports.h | 10 ++-- src/pathjoin.c | 4 - src/pathsplit.c | 2 src/rgui_path.c | 4 - src/shfile.c | 3 + tests/ext-tests.R | 8 +-- tests/faster-subsequent-times.R | 4 + 24 files changed, 211 insertions(+), 103 deletions(-)
Title: CAESAR: a Cross-Technology and Cross-Resolution Framework for
Spatial Omics Annotation
Description: Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. [...truncated...]
Author: Xiao Zhang [aut, cre],
Wei Liu [aut],
Jin Liu [aut]
Maintainer: Xiao Zhang <zhangxiao1994@cuhk.edu.cn>
This is a re-admission after prior archival of version 0.2.2 dated 2025-04-01
Diff between CAESAR.Suite versions 0.2.2 dated 2025-04-01 and 0.2.3 dated 2025-11-07
DESCRIPTION | 10 MD5 | 36 NAMESPACE | 1 R/caesar.R | 22 R/caesar_annotation.R | 16 data/Human_HK_genes.rda |binary data/Mouse_HK_genes.rda |binary data/toydata.rda |binary inst/doc/STMOB.R | 417 +++++----- inst/doc/STMOB.Rmd | 61 - inst/doc/STMOB.html | 928 +++++++---------------- inst/doc/XeniumBC.R | 537 ++++++------- inst/doc/XeniumBC.Rmd | 65 - inst/doc/XeniumBC.html | 1818 ++++++++++------------------------------------ man/CAESAR.annotation.Rd | 4 man/CAESAR.coembedding.Rd | 6 man/find.sig.genes.Rd | 5 vignettes/STMOB.Rmd | 61 - vignettes/XeniumBC.Rmd | 65 - 19 files changed, 1339 insertions(+), 2713 deletions(-)
Title: A Common Representation of Time Indices of Different Types
Description: Provides an easy-to-use tind class representing time indices
of different types (years, quarters, months, ISO 8601 weeks, dates,
time of day, date-time, and arbitrary integer/numeric indices).
Includes an extensive collection of functions for calendrical computations
(including business applications), index conversions, index parsing,
and other operations. Auxiliary classes representing time differences and
time intervals (with set operations and index matching functionality) are
also provided. All routines have been optimised for speed in order
to facilitate computations on large datasets. More details regarding
calendars in general and calendrical algorithms can be found in
"Calendar FAQ" by Claus Tøndering <https://www.tondering.dk/claus/calendar.html>.
Author: Grzegorz Klima [aut, cre, cph]
Maintainer: Grzegorz Klima <dever@post.pl>
This is a re-admission after prior archival of version 0.2.1 dated 2025-10-26
Diff between tind versions 0.2.1 dated 2025-10-26 and 0.2.2 dated 2025-11-07
DESCRIPTION | 8 MD5 | 72 +++--- inst/doc/calendar.html | 138 ++++++------- inst/po/en@quot/LC_MESSAGES/R-tind.mo |binary inst/po/pl/LC_MESSAGES/R-tind.mo |binary po/R-tind.pot | 4 tests/testthat/test-00-base-utils.R | 36 +-- tests/testthat/test-01-base-in.R | 48 ++-- tests/testthat/test-02-base-yqmwd.R | 276 +++++++++++++------------- tests/testthat/test-03-base-tz.R | 16 - tests/testthat/test-04-base-th.R | 270 +++++++++++++------------- tests/testthat/test-05-base-res.R | 110 +++++----- tests/testthat/test-06-base-pretty.R | 22 +- tests/testthat/test-07-base-locale.R | 24 +- tests/testthat/test-08-base-types.R | 56 ++--- tests/testthat/test-09-base-parse.R | 196 +++++++++---------- tests/testthat/test-10-tind.R | 72 +++--- tests/testthat/test-11-format_parse.R | 20 - tests/testthat/test-12-coercion.R | 144 ++++++------- tests/testthat/test-13-methods.R | 90 ++++---- tests/testthat/test-14-tdiff.R | 112 +++++----- tests/testthat/test-15-tinterval.R | 88 ++++---- tests/testthat/test-16-types.R | 22 +- tests/testthat/test-17-ops.R | 16 - tests/testthat/test-18-setops_match.R | 184 ++++++++--------- tests/testthat/test-19-tzone.R | 22 +- tests/testthat/test-20-tspan.R | 20 - tests/testthat/test-22-print_summ_str.R | 26 +- tests/testthat/test-23-round.R | 50 ++-- tests/testthat/test-24-cut.R | 10 tests/testthat/test-26-ord_reg.R | 78 +++---- tests/testthat/test-27-calendar.R | 330 ++++++++++++++++---------------- tests/testthat/test-28-calendars.R | 78 +++---- tests/testthat/test-29-business.R | 86 ++++---- tests/testthat/test-30-other.R | 78 +++---- tests/testthat/test-31-merge.R | 166 ++++++++-------- tests/testthat/test-32-pretty.R | 12 - 37 files changed, 1490 insertions(+), 1490 deletions(-)
Title: Interpolate Bathymetry and Quantify Physical Aquatic Habitat
Description: Offers bathymetric interpolation using Inverse Distance Weighted and Ordinary Kriging via the 'gstat' and 'terra' packages. Other functions focus on quantifying physical aquatic habitats (e.g., littoral, epliminion, metalimnion, hypolimnion) from interpolated digital elevation models (DEMs). Functions were designed to calculate these metrics across water levels for use in reservoirs but can be applied to any DEM and will provide values for fixed conditions. Parameters like Secchi disk depth or estimated photic zone, thermocline depth, and water level fluctuation depth are included in most functions.
Author: Tristan Blechinger [aut, cre] ,
Sean Bertalot [aut]
Maintainer: Tristan Blechinger <tblechin@uwyo.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2025-04-15
Diff between rLakeHabitat versions 1.0.0 dated 2025-04-15 and 1.0.1 dated 2025-11-07
DESCRIPTION | 15 ++++++++------- MD5 | 6 +++--- R/animBathy.R | 2 +- build/vignette.rds |binary 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.3.2 dated 2025-10-12 and 0.3.5 dated 2025-11-07
DESCRIPTION | 6 MD5 | 23 - NEWS.md | 7 R/cms_download_subset.r | 28 +- R/translate.R | 2 README.md | 416 +++++++++++++++---------------- inst/doc/translate.R | 2 inst/doc/translate.Rmd | 12 inst/doc/translate.html | 10 man/figures/README-download-subset-1.png |binary man/figures/README-leaflet-1.png |binary tests/testthat/test-translate.R |only vignettes/translate.Rmd | 12 13 files changed, 271 insertions(+), 247 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-20 1.1-2
2025-05-07 1.1-1
2025-05-01 1.1-0
2022-08-13 1.0-8
2022-05-02 1.0-7
2021-11-18 1.0-5
2020-03-08 1.0-2
2020-01-30 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-16 0.11
2024-09-16 0.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-29 0.6.1
2025-05-29 0.6.0
2025-01-27 0.5.0
2024-12-09 0.4.0
2024-08-26 0.3.0
2024-07-31 0.2.0
2024-07-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-29 0.1.0
Title: Calculate Sun Position, Sunrise, Sunset, Solar Noon and Twilight
Description: Provides a set of convenient functions for calculating sun-related information, including the sun's position (elevation and azimuth), and the times of sunrise, sunset, solar noon, and twilight for any given geographical location on Earth. These calculations are based on equations provided by the National Oceanic & Atmospheric Administration (NOAA) <https://gml.noaa.gov/grad/solcalc/calcdetails.html> as described in "Astronomical Algorithms" by Jean Meeus (1991, ISBN: 978-0-943396-35-4).
Author: Roger Bivand [aut] ,
Adriaan M. Dokter [ctb, cre] ,
Pieter Huybrechts [ctb] ,
Sebastian Luque [aut],
Greg Pelletier [ctb],
Alexander Tedeschi [ctb]
Maintainer: Adriaan M. Dokter <amd427@cornell.edu>
Diff between suntools versions 1.0.1 dated 2024-11-20 and 1.1.0 dated 2025-11-07
DESCRIPTION | 19 +++++++++++-------- MD5 | 17 +++++++++-------- NEWS.md | 8 ++++++-- R/crepuscule.R | 2 +- R/solarnoon.R | 2 +- R/sun.R | 14 ++++++++++++++ R/sunriset.R | 2 +- README.md | 2 +- man/dls_correction.Rd |only tests/testthat/test-sun-methods.R | 24 ++++++++++++++++++++++++ 10 files changed, 68 insertions(+), 22 deletions(-)
Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.2 dated 2025-09-21 and 0.3 dated 2025-11-07
ReliaGrowR-0.2/ReliaGrowR/inst/paper/paper.html |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/_snaps/gof |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-duane.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-gof.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rdt.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rga.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-weibull_to_rga.R |only ReliaGrowR-0.3/ReliaGrowR/DESCRIPTION | 10 ReliaGrowR-0.3/ReliaGrowR/MD5 | 81 +- ReliaGrowR-0.3/ReliaGrowR/NAMESPACE | 4 ReliaGrowR-0.3/ReliaGrowR/NEWS.md | 10 ReliaGrowR-0.3/ReliaGrowR/R/duane.R | 350 ++++++++- ReliaGrowR-0.3/ReliaGrowR/R/gof.R | 86 +- ReliaGrowR-0.3/ReliaGrowR/R/grwr_api.R |only ReliaGrowR-0.3/ReliaGrowR/R/rdt.R | 172 +++- ReliaGrowR-0.3/ReliaGrowR/R/rga.R | 372 +++++++++- ReliaGrowR-0.3/ReliaGrowR/R/srr-stats-standards.R |only ReliaGrowR-0.3/ReliaGrowR/R/testdata.r |only ReliaGrowR-0.3/ReliaGrowR/R/weibull_to_rga.R | 84 +- ReliaGrowR-0.3/ReliaGrowR/README.md | 24 ReliaGrowR-0.3/ReliaGrowR/build/vignette.rds |binary ReliaGrowR-0.3/ReliaGrowR/data |only ReliaGrowR-0.3/ReliaGrowR/inst/CITATION | 9 ReliaGrowR-0.3/ReliaGrowR/inst/WORDLIST | 7 ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.R | 26 ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.Rmd | 57 + ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.html | 72 + ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.R |only ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.Rmd |only ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.html |only ReliaGrowR-0.3/ReliaGrowR/inst/paper/paper.Rmd | 2 ReliaGrowR-0.3/ReliaGrowR/man/duane.Rd | 52 + ReliaGrowR-0.3/ReliaGrowR/man/grwr_api.Rd |only ReliaGrowR-0.3/ReliaGrowR/man/plot.rga.Rd | 6 ReliaGrowR-0.3/ReliaGrowR/man/ppplot.rga.Rd | 6 ReliaGrowR-0.3/ReliaGrowR/man/print.rdt.Rd | 2 ReliaGrowR-0.3/ReliaGrowR/man/print.rga.Rd | 2 ReliaGrowR-0.3/ReliaGrowR/man/qqplot.rga.Rd | 4 ReliaGrowR-0.3/ReliaGrowR/man/rdt.Rd | 16 ReliaGrowR-0.3/ReliaGrowR/man/rga.Rd | 64 + ReliaGrowR-0.3/ReliaGrowR/man/testdata.Rd |only ReliaGrowR-0.3/ReliaGrowR/man/weibull_to_rga.Rd | 28 ReliaGrowR-0.3/ReliaGrowR/tests/spelling.R | 9 ReliaGrowR-0.3/ReliaGrowR/tests/testthat/Rplots.pdf |binary ReliaGrowR-0.3/ReliaGrowR/tests/testthat/_snaps/srr-rga |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-duane.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-gof.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-rga.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-testdata.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-weibull_to_rga.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr_rdt.R |only ReliaGrowR-0.3/ReliaGrowR/vignettes/RGA.Rmd | 57 + ReliaGrowR-0.3/ReliaGrowR/vignettes/data.Rmd |only 53 files changed, 1368 insertions(+), 244 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb] ,
Lona Koers [ctb],
Alexander Winterstet [...truncated...]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.9.0 dated 2025-07-31 and 0.10.0 dated 2025-11-07
DESCRIPTION | 49 +- MD5 | 288 +++++++------- NAMESPACE | 6 NEWS.md | 16 R/FilterEnsemble.R |only R/Graph.R | 59 +-- R/GraphLearner.R | 12 R/PipeOp.R | 25 - R/PipeOpBoxCox.R | 3 R/PipeOpClassifAvg.R | 42 +- R/PipeOpDateFeatures.R | 221 ++++++----- R/PipeOpEnsemble.R | 19 R/PipeOpFeatureUnion.R | 13 R/PipeOpFixFactors.R | 22 + R/PipeOpInfo.R |only R/PipeOpIsomap.R |only R/PipeOpLearnerCV.R | 289 ++++++++++++++ R/PipeOpLearnerQuantiles.R | 2 R/PipeOpNMF.R | 60 ++- R/PipeOpPCA.R | 4 R/PipeOpRegrAvg.R | 177 ++++++++- R/PipeOpRemoveConstants.R | 2 R/PipeOpTrafo.R | 31 + R/PipeOpVtreat.R | 26 - R/TaskRegr_boston_housing.R | 4 R/bibentries.R | 10 R/mlr_graphs.R | 2 R/mlr_pipeops.R | 2 R/multiplicity.R | 2 R/preproc.R | 7 R/zzz.R | 24 + inst/doc/extending.html | 11 inst/testthat/helper_functions.R | 2 man/PipeOp.Rd | 2 man/PipeOpEncodePL.Rd | 2 man/PipeOpEnsemble.Rd | 2 man/PipeOpImpute.Rd | 2 man/PipeOpTargetTrafo.Rd | 2 man/PipeOpTaskPreproc.Rd | 2 man/PipeOpTaskPreprocSimple.Rd | 2 man/mlr_filters_ensemble.Rd |only man/mlr_graphs.Rd | 2 man/mlr_graphs_bagging.Rd | 2 man/mlr_graphs_ovr.Rd | 2 man/mlr_graphs_robustify.Rd | 2 man/mlr_graphs_stacking.Rd | 2 man/mlr_graphs_targettrafo.Rd | 2 man/mlr_learners_graph.Rd | 2 man/mlr_pipeops.Rd | 4 man/mlr_pipeops_adas.Rd | 4 man/mlr_pipeops_blsmote.Rd | 4 man/mlr_pipeops_boxcox.Rd | 4 man/mlr_pipeops_branch.Rd | 2 man/mlr_pipeops_chunk.Rd | 2 man/mlr_pipeops_classbalancing.Rd | 2 man/mlr_pipeops_classifavg.Rd | 34 + man/mlr_pipeops_classweights.Rd | 2 man/mlr_pipeops_colapply.Rd | 2 man/mlr_pipeops_collapsefactors.Rd | 2 man/mlr_pipeops_colroles.Rd | 2 man/mlr_pipeops_copy.Rd | 2 man/mlr_pipeops_datefeatures.Rd | 47 +- man/mlr_pipeops_decode.Rd | 2 man/mlr_pipeops_encode.Rd | 2 man/mlr_pipeops_encodeimpact.Rd | 2 man/mlr_pipeops_encodelmer.Rd | 4 man/mlr_pipeops_encodeplquantiles.Rd | 2 man/mlr_pipeops_encodepltree.Rd | 4 man/mlr_pipeops_featureunion.Rd | 2 man/mlr_pipeops_filter.Rd | 4 man/mlr_pipeops_fixfactors.Rd | 20 + man/mlr_pipeops_histbin.Rd | 2 man/mlr_pipeops_ica.Rd | 4 man/mlr_pipeops_imputeconstant.Rd | 2 man/mlr_pipeops_imputehist.Rd | 2 man/mlr_pipeops_imputelearner.Rd | 4 man/mlr_pipeops_imputemean.Rd | 2 man/mlr_pipeops_imputemedian.Rd | 2 man/mlr_pipeops_imputemode.Rd | 2 man/mlr_pipeops_imputeoor.Rd | 2 man/mlr_pipeops_imputesample.Rd | 2 man/mlr_pipeops_info.Rd |only man/mlr_pipeops_isomap.Rd |only man/mlr_pipeops_kernelpca.Rd | 4 man/mlr_pipeops_learner.Rd | 4 man/mlr_pipeops_learner_cv.Rd | 31 + man/mlr_pipeops_learner_pi_cvplus.Rd | 4 man/mlr_pipeops_learner_quantiles.Rd | 4 man/mlr_pipeops_missind.Rd | 2 man/mlr_pipeops_modelmatrix.Rd | 2 man/mlr_pipeops_multiplicityexply.Rd | 2 man/mlr_pipeops_multiplicityimply.Rd | 2 man/mlr_pipeops_mutate.Rd | 2 man/mlr_pipeops_nearmiss.Rd | 4 man/mlr_pipeops_nmf.Rd | 9 man/mlr_pipeops_nop.Rd | 2 man/mlr_pipeops_ovrsplit.Rd | 4 man/mlr_pipeops_ovrunite.Rd | 4 man/mlr_pipeops_pca.Rd | 6 man/mlr_pipeops_proxy.Rd | 4 man/mlr_pipeops_quantilebin.Rd | 2 man/mlr_pipeops_randomprojection.Rd | 2 man/mlr_pipeops_randomresponse.Rd | 4 man/mlr_pipeops_regravg.Rd | 94 ++++ man/mlr_pipeops_removeconstants.Rd | 2 man/mlr_pipeops_renamecolumns.Rd | 2 man/mlr_pipeops_replicate.Rd | 2 man/mlr_pipeops_rowapply.Rd | 2 man/mlr_pipeops_scale.Rd | 2 man/mlr_pipeops_scalemaxabs.Rd | 2 man/mlr_pipeops_scalerange.Rd | 2 man/mlr_pipeops_select.Rd | 2 man/mlr_pipeops_smote.Rd | 4 man/mlr_pipeops_smotenc.Rd | 4 man/mlr_pipeops_spatialsign.Rd | 2 man/mlr_pipeops_subsample.Rd | 2 man/mlr_pipeops_targetinvert.Rd | 36 + man/mlr_pipeops_targetmutate.Rd | 4 man/mlr_pipeops_targettrafoscalerange.Rd | 4 man/mlr_pipeops_textvectorizer.Rd | 4 man/mlr_pipeops_threshold.Rd | 4 man/mlr_pipeops_tomek.Rd | 4 man/mlr_pipeops_tunethreshold.Rd | 4 man/mlr_pipeops_unbranch.Rd | 2 man/mlr_pipeops_updatetarget.Rd | 4 man/mlr_pipeops_vtreat.Rd | 4 man/mlr_pipeops_yeojohnson.Rd | 4 man/po.Rd | 2 man/ppl.Rd | 2 man/preproc.Rd | 9 tests/testthat/_snaps |only tests/testthat/test_Graph.R | 14 tests/testthat/test_PipeOp.R | 23 - tests/testthat/test_filter_ensemble.R |only tests/testthat/test_meta.R | 4 tests/testthat/test_mlr_graphs_robustify.R | 29 + tests/testthat/test_multiplicities.R | 2 tests/testthat/test_pipeop_classifavg.R |only tests/testthat/test_pipeop_classweights.R | 24 + tests/testthat/test_pipeop_datefeatures.R | 104 ++--- tests/testthat/test_pipeop_featureunion.R | 31 + tests/testthat/test_pipeop_impute.R | 26 + tests/testthat/test_pipeop_imputelearner.R | 26 + tests/testthat/test_pipeop_info.R |only tests/testthat/test_pipeop_isomap.R |only tests/testthat/test_pipeop_learnercv.R | 522 ++++++++++++++++++++++++++- tests/testthat/test_pipeop_nmf.R | 85 ++++ tests/testthat/test_pipeop_regravg.R |only tests/testthat/test_pipeop_removeconstants.R | 16 tests/testthat/test_pipeop_task_preproc.R | 139 +++++++ tests/testthat/test_pipeop_textvectorizer.R | 5 151 files changed, 2458 insertions(+), 536 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Creates styled tables for data presentation. Export to HTML, LaTeX,
RTF, 'Word', 'Excel', 'PowerPoint', 'typst', SVG and PNG. Simple, modern
interface to manipulate borders, size, position, captions, colours,
text styles and number formatting. Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function to create regression tables, and 'quick_*'
one-liners to print tables to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 5.7.0 dated 2025-08-18 and 5.8.0 dated 2025-11-07
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