Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.3.1 dated 2025-10-09 and 1.4.0 dated 2025-11-07
visOmopResults-1.3.1/visOmopResults/man/tableStyleCode.Rd |only visOmopResults-1.4.0/visOmopResults/DESCRIPTION | 8 visOmopResults-1.4.0/visOmopResults/MD5 | 130 visOmopResults-1.4.0/visOmopResults/NAMESPACE | 1 visOmopResults-1.4.0/visOmopResults/NEWS.md | 103 visOmopResults-1.4.0/visOmopResults/R/datatableInternal.R | 26 visOmopResults-1.4.0/visOmopResults/R/documentationHelper.R | 45 visOmopResults-1.4.0/visOmopResults/R/formatTable.R | 59 visOmopResults-1.4.0/visOmopResults/R/fxTable.R | 7 visOmopResults-1.4.0/visOmopResults/R/gtTable.R | 13 visOmopResults-1.4.0/visOmopResults/R/helperFunctions.R | 44 visOmopResults-1.4.0/visOmopResults/R/plot.R | 62 visOmopResults-1.4.0/visOmopResults/R/plottingThemes.R | 213 visOmopResults-1.4.0/visOmopResults/R/reactableInternal.R | 40 visOmopResults-1.4.0/visOmopResults/R/styles.R |only visOmopResults-1.4.0/visOmopResults/R/tidy.R | 132 visOmopResults-1.4.0/visOmopResults/R/tinyTable.R | 9 visOmopResults-1.4.0/visOmopResults/R/utilities.R | 117 visOmopResults-1.4.0/visOmopResults/R/visOmopTable.R | 15 visOmopResults-1.4.0/visOmopResults/R/visTable.R | 73 visOmopResults-1.4.0/visOmopResults/build/vignette.rds |binary visOmopResults-1.4.0/visOmopResults/inst/brand |only visOmopResults-1.4.0/visOmopResults/inst/createMockReportData.R | 138 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.R | 231 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.Rmd | 440 visOmopResults-1.4.0/visOmopResults/inst/doc/a01_tables.html | 5676 +++++----- visOmopResults-1.4.0/visOmopResults/inst/doc/a02_plots.Rmd | 592 - visOmopResults-1.4.0/visOmopResults/inst/doc/a02_plots.html | 20 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.R | 1 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.Rmd | 539 visOmopResults-1.4.0/visOmopResults/inst/doc/a03_quarto_reports.html | 15 visOmopResults-1.4.0/visOmopResults/inst/doc/a04_shiny_apps.Rmd | 738 - visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.R |only visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.Rmd |only visOmopResults-1.4.0/visOmopResults/inst/doc/a05_style.html |only visOmopResults-1.4.0/visOmopResults/man/barPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/boxPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/emptyPlot.Rd | 17 visOmopResults-1.4.0/visOmopResults/man/emptyTable.Rd | 24 visOmopResults-1.4.0/visOmopResults/man/figures/README-unnamed-chunk-5-1.png |binary visOmopResults-1.4.0/visOmopResults/man/figures/README-unnamed-chunk-6-1.png |binary visOmopResults-1.4.0/visOmopResults/man/formatTable.Rd | 33 visOmopResults-1.4.0/visOmopResults/man/plotDoc.Rd | 20 visOmopResults-1.4.0/visOmopResults/man/scatterPlot.Rd | 26 visOmopResults-1.4.0/visOmopResults/man/setGlobalPlotOptions.Rd | 17 visOmopResults-1.4.0/visOmopResults/man/setGlobalTableOptions.Rd | 25 visOmopResults-1.4.0/visOmopResults/man/tableDoc.Rd | 25 visOmopResults-1.4.0/visOmopResults/man/themeVisOmop.Rd | 12 visOmopResults-1.4.0/visOmopResults/man/visOmopTable.Rd | 29 visOmopResults-1.4.0/visOmopResults/man/visTable.Rd | 29 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/datatableInternal.md | 5 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/formatTable.md | 2 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/reactableInternal.md | 16 visOmopResults-1.4.0/visOmopResults/tests/testthat/_snaps/tinyTable.md | 8 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-datatableInternal.R | 3 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-formatTable.R | 133 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-fxTable.R | 47 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-gtTable.R | 160 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-helperFunctions.R | 177 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-plot.R | 2 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-reactableInternal.R | 4 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-tinyTable.R | 6 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-visOmopTable.R | 36 visOmopResults-1.4.0/visOmopResults/tests/testthat/test-visTable.R | 15 visOmopResults-1.4.0/visOmopResults/vignettes/a01_tables.Rmd | 440 visOmopResults-1.4.0/visOmopResults/vignettes/a02_plots.Rmd | 592 - visOmopResults-1.4.0/visOmopResults/vignettes/a03_quarto_reports.Rmd | 539 visOmopResults-1.4.0/visOmopResults/vignettes/a04_shiny_apps.Rmd | 738 - visOmopResults-1.4.0/visOmopResults/vignettes/a05_style.Rmd |only 69 files changed, 6658 insertions(+), 6061 deletions(-)
More information about visOmopResults at CRAN
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Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
Author: Hajk-Georg Drost [aut, cre] ,
Stefan Manolache [aut, ctb] ,
Jaruwatana Sodai Lotharukpong [aut, ctb] ,
Nikola Kalabova [aut, ctb] ,
Filipa Martins Costa [aut, ctb],
Kristian K Ullrich [aut, ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
This is a re-admission after prior archival of version 0.9.3 dated 2021-02-24
Diff between myTAI versions 0.9.3 dated 2021-02-24 and 2.3.3 dated 2025-11-07
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Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.6.3 dated 2025-10-10 and 1.6.4 dated 2025-11-07
DESCRIPTION | 8 MD5 | 88 R/GPModel.R | 306 +-- R/gpb.Booster.R | 27 R/gpb.plot.partial.dependence.R | 22 README.md | 4 configure.ac | 2 demo/GPBoost_algorithm.R | 10 demo/compare_usage_lme4_gpboost.R | 8 demo/examples_in_R_package_documentation.R | 14 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 95 - man/GPModel.Rd | 5 man/GPModel_shared_params.Rd | 13 man/fit.GPModel.Rd | 8 man/fit.Rd | 4 man/fitGPModel.Rd | 19 man/get_coef.GPModel.Rd | 8 man/get_coef.Rd | 8 man/get_cov_pars.GPModel.Rd | 8 man/get_cov_pars.Rd | 8 man/get_nested_categories.Rd | 2 man/gpb.plot.part.dep.interact.Rd | 8 man/gpb.plot.partial.dependence.Rd | 14 man/predict.GPModel.Rd | 4 man/set_optim_params.GPModel.Rd | 4 man/set_optim_params.Rd | 4 man/summary.GPModel.Rd | 4 src/CG_utils.cpp | 12 src/c_api.cpp | 34 src/gpboost_R.cpp | 35 src/gpboost_R.h | 29 src/include/GPBoost/cov_fcts.h | 49 src/include/GPBoost/likelihoods.h | 158 + src/include/GPBoost/re_comp.h | 17 src/include/GPBoost/re_model.h | 35 src/include/GPBoost/re_model_template.h | 895 +++++----- src/include/LightGBM/c_api.h | 23 src/objective/regression_objective.hpp | 20 src/re_model.cpp | 206 +- tests/testthat/_snaps |only tests/testthat/test_GPModel_combined_GP_random_effects.R | 34 tests/testthat/test_GPModel_gaussian_process.R | 693 +++---- tests/testthat/test_GPModel_grouped_random_effects.R | 158 + tests/testthat/test_GPModel_non_Gaussian_data.R | 601 +++--- tests/testthat/test_z_GPBoost_algorithm.R | 7 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 4 46 files changed, 2117 insertions(+), 1598 deletions(-)
Title: Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Description: Functions to import data from more than 30,000 surface
meteorological sites around the world managed by the National Oceanic
and Atmospheric Administration (NOAA) Integrated Surface Database
(ISD, see
<https://www.ncei.noaa.gov/products/land-based-station/integrated-surface-database>).
Author: David Carslaw [aut, cre] ,
Jack Davison [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between worldmet versions 0.10.1 dated 2025-08-20 and 0.10.2 dated 2025-11-07
DESCRIPTION | 13 +++++------ MD5 | 13 ++++++----- NEWS.md | 56 ++++++++++++++++++++++++++++++++++++++------------ R/importNOAA.R | 50 ++++++++++++++++++-------------------------- R/importNOAAlite.R | 7 ++---- R/utils.R |only man/importNOAA.Rd | 13 +++++------ man/importNOAAlite.Rd | 4 --- 8 files changed, 87 insertions(+), 69 deletions(-)
Title: Analyze Data from the Truth Commission in Colombia
Description: Facilitates use and analysis of data about the armed conflict
in Colombia resulting from the joint project between La Jurisdicción
Especial para la Paz (JEP), La Comisión para el Esclarecimiento de la
Verdad, la Convivencia y la No repetición (CEV), and the Human Rights Data
Analysis Group (HRDAG). The data are 100 replicates from a multiple
imputation through chained equations as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. With the replicates
the user can examine four human rights violations that occurred in the
Colombian conflict accounting for the impact of missing fields and fully
missing observations.
Author: Maria Gargiulo [aut, cre],
Maria Juliana Duran [aut],
Paula Andrea Amado [aut],
Patrick Ball [rev]
Maintainer: Maria Gargiulo <mariag@hrdag.org>
Diff between verdata versions 1.0.0 dated 2025-04-24 and 1.0.1 dated 2025-11-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ README.md | 16 ++++++++++++---- build/partial.rdb |binary inst/WORDLIST | 18 ++++++++++++++++-- inst/docs/README-en.md | 20 ++++++++++++++------ tests/testthat/test-estimate_mse.R | 2 +- 8 files changed, 57 insertions(+), 23 deletions(-)
Title: Urban Centrality Index
Description: Calculates the Urban Centrality Index (UCI) as in Pereira et al.,
(2013) <doi:10.1111/gean.12002>. The UCI measures the
extent to which the spatial organization of a city or region varies
from extreme polycentric to extreme monocentric in a continuous
scale from 0 to 1. Values closer to 0 indicate more polycentric patterns
and values closer to 1 indicate a more monocentric urban form.
Author: Rafael H. M. Pereira [aut, cre]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between uci versions 0.3.0 dated 2023-09-23 and 0.3.1 dated 2025-11-07
DESCRIPTION | 12 ++++---- MD5 | 22 ++++++++-------- NEWS.md | 6 ++++ R/uci.R | 13 +++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/uci.R | 12 ++++---- inst/doc/uci.Rmd | 11 ++------ inst/doc/uci.html | 52 +++++++++++++------------------------- man/uci.Rd | 3 -- tests/tests_rafa/max_uci_sparse.R | 10 +++++-- vignettes/uci.Rmd | 11 ++------ 12 files changed, 73 insertions(+), 79 deletions(-)
Title: Estimation of the Proportion of Treatment Effect Explained by
Surrogate Outcome Information
Description: Estimates the proportion of treatment effect on a censored primary outcome that is explained by the treatment effect on a censored surrogate outcome/event. All methods are described in detail in Parast, et al (2020) "Assessing the Value of a Censored Surrogate Outcome" <doi:10.1007/s10985-019-09473-1> and Wang et al (2025) "Model-free Approach to Evaluate a Censored Intermediate Outcome as a Surrogate for Overall Survival" <doi:10.1002/sim.70268>. A tutorial for this package can be found at <https://www.laylaparast.com/surrogateoutcome>.
Author: Layla Parast [aut, cre],
Xuan Wang [aut]
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateOutcome versions 1.1 dated 2021-11-15 and 1.2 dated 2025-11-07
SurrogateOutcome-1.1/SurrogateOutcome/build |only SurrogateOutcome-1.1/SurrogateOutcome/man/SurrogateOutcome-package.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/DESCRIPTION | 15 SurrogateOutcome-1.2/SurrogateOutcome/MD5 | 12 SurrogateOutcome-1.2/SurrogateOutcome/NAMESPACE | 10 SurrogateOutcome-1.2/SurrogateOutcome/R/SurrogateOutcome.R | 452 +++++++++- SurrogateOutcome-1.2/SurrogateOutcome/man/R.opt.event.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/WEIGHT.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/WEIGHT.p.Rd |only SurrogateOutcome-1.2/SurrogateOutcome/man/resam.Rd |only 10 files changed, 462 insertions(+), 27 deletions(-)
More information about SurrogateOutcome at CRAN
Permanent link
Title: SM/LM EGARCH & GARCH, VaR/ES Backtesting & Dual LM Extensions
Description: Implement and fit a variety of short-memory (SM) and long-memory
(LM) models from a very broad family of exponential generalized autoregressive
conditional heteroskedasticity (EGARCH) models, such as a MEGARCH (modified
EGARCH), FIEGARCH (fractionally integrated EGARCH), FIMLog-GARCH (fractionally
integrated modulus Log-GARCH), and more. The FIMLog-GARCH as part of the
EGARCH family is discussed in Feng et al. (2023)
<https://econpapers.repec.org/paper/pdnciepap/156.htm>. For convenience and
the purpose of comparison, a variety of other popular SM and LM GARCH-type
models, like an APARCH model, a fractionally integrated
APARCH (FIAPARCH) model, standard GARCH and fractionally integrated GARCH
(FIGARCH) models, GJR-GARCH and FIGJR-GARCH models, TGARCH and FITGARCH
models, are implemented as well as dual models with simultaneous modelling of
the mean, including dual long-memory models with a fractionally integrated
autoregressive moving average (FARIMA) model in the mean and a long [...truncated...]
Author: Dominik Schulz [aut, cre] ,
Yuanhua Feng [aut] ,
Christian Peitz [aut] ),
Oliver Kojo Ayensu [aut] ,
Thomas Gries [ctb] ,
Sikandar Siddiqui [ctb] ,
Shujie Li [ctb]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between fEGarch versions 1.0.2 dated 2025-09-11 and 1.0.3 dated 2025-11-07
fEGarch-1.0.2/fEGarch/man/fEGarch_fit-egarch_type_spec-method.Rd |only fEGarch-1.0.2/fEGarch/man/fEGarch_fit-loggarch_type_spec-method.Rd |only fEGarch-1.0.2/fEGarch/man/fEGarch_fit.Rd |only fEGarch-1.0.2/fEGarch/man/forecasting-model-methods.Rd |only fEGarch-1.0.3/fEGarch/DESCRIPTION | 6 fEGarch-1.0.3/fEGarch/MD5 | 74 ++--- fEGarch-1.0.3/fEGarch/NAMESPACE | 5 fEGarch-1.0.3/fEGarch/NEWS.md | 10 fEGarch-1.0.3/fEGarch/R/class-egarch-spec.R | 116 ++++----- fEGarch-1.0.3/fEGarch/R/distr_est.R | 6 fEGarch-1.0.3/fEGarch/R/forecasting-functions.R | 56 ++-- fEGarch-1.0.3/fEGarch/R/general_garch_fitting.R | 6 fEGarch-1.0.3/fEGarch/R/generics.R | 58 ++-- fEGarch-1.0.3/fEGarch/R/popular-methods.R | 2 fEGarch-1.0.3/fEGarch/R/sysdata.rda |binary fEGarch-1.0.3/fEGarch/R/ufRisk-functions.R | 14 - fEGarch-1.0.3/fEGarch/README.md | 120 ++++----- fEGarch-1.0.3/fEGarch/man/SP500.Rd | 50 +-- fEGarch-1.0.3/fEGarch/man/UKinflation.Rd | 52 ++-- fEGarch-1.0.3/fEGarch/man/accessor_methods_distr_est.Rd | 94 +++---- fEGarch-1.0.3/fEGarch/man/autoplot-fEGarch_risk-method.Rd | 72 ++--- fEGarch-1.0.3/fEGarch/man/backtest-generics.Rd | 82 +++--- fEGarch-1.0.3/fEGarch/man/backtest-tests.Rd | 12 fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-12-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-15-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-25-1.png |binary fEGarch-1.0.3/fEGarch/man/figures/README-unnamed-chunk-9-1.png |binary fEGarch-1.0.3/fEGarch/man/fit-test-generics.Rd | 126 +++++----- fEGarch-1.0.3/fEGarch/man/fit_test_suite-fEGarch_fit-method.Rd | 102 ++++---- fEGarch-1.0.3/fEGarch/man/fitted.Rd | 72 ++--- fEGarch-1.0.3/fEGarch/man/forecasting-generics.Rd | 12 fEGarch-1.0.3/fEGarch/man/loss_functions.Rd | 46 +-- fEGarch-1.0.3/fEGarch/man/mean_spec_methods.Rd | 96 +++---- fEGarch-1.0.3/fEGarch/man/measure_risk.Rd | 2 fEGarch-1.0.3/fEGarch/man/nonpar-generics.Rd | 84 +++--- fEGarch-1.0.3/fEGarch/man/plot-fEGarch_fit-ANY-method.Rd | 118 ++++----- fEGarch-1.0.3/fEGarch/man/plot-fEGarch_risk-ANY-method.Rd | 78 +++--- fEGarch-1.0.3/fEGarch/man/plot.Rd | 42 +-- fEGarch-1.0.3/fEGarch/man/residuals.Rd | 66 ++--- fEGarch-1.0.3/fEGarch/man/sigma.Rd | 72 ++--- 40 files changed, 870 insertions(+), 881 deletions(-)
Title: Risk Assessments for Ecosystems or Ecosystem Components
Description: Implementation of a modular framework for ecosystem risk assessments,
combining existing risk assessment approaches tailored to semi-quantitative and
quantitative analyses.
Author: Helene Gutte [aut, cre, cph] ,
Saskia A. Otto [aut]
Maintainer: Helene Gutte <helenegutte96@gmail.com>
Diff between ecorisk versions 0.1.1 dated 2025-05-27 and 0.2.1 dated 2025-11-07
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 15 ++++++++------- NEWS.md | 4 ++++ R/plot_heatmap.R | 12 ++++++++---- R/plot_radar.R | 11 +++++++++-- build/vignette.rds |binary man/plot_heatmap.Rd | 12 ++++++++---- man/plot_radar.Rd | 9 ++++++++- 9 files changed, 49 insertions(+), 22 deletions(-)
Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] ,
Kamran Safi [aut] ,
Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move2 versions 0.4.4 dated 2025-02-10 and 0.4.5 dated 2025-11-07
DESCRIPTION | 13 +- MD5 | 28 ++--- NEWS.md | 5 build/vignette.rds |binary inst/doc/albatross.html | 15 +- inst/doc/convert.html | 5 inst/doc/filtering_tracks.html | 43 ++++---- inst/doc/movebank.html | 85 ++++++++-------- inst/doc/programming_move2_object.html | 5 inst/doc/trajectory_analysis.R | 4 inst/doc/trajectory_analysis.Rmd | 4 inst/doc/trajectory_analysis.html | 19 ++- tests/testthat/test-mt_read_speed.R | 10 + tests/testthat/test-mt_sim_brownian_motion.R | 137 ++++++++++++++++++++------- vignettes/trajectory_analysis.Rmd | 4 15 files changed, 235 insertions(+), 142 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.4.0 dated 2025-06-04 and 1.5.0 dated 2025-11-07
DESCRIPTION | 15 ++-- MD5 | 63 ++++++++++---------- NAMESPACE | 4 + NEWS.md | 8 ++ R/CallbackAsyncTuning.R | 18 +++++ R/ObjectiveTuning.R | 2 R/TunerBatchInternal.R | 2 R/TuningInstanceAsyncMulticrit.R | 45 +++++++++++++- R/TuningInstanceAsyncSingleCrit.R | 52 ++++++++++++++-- R/mlr_callbacks.R | 4 + README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only man/callback_async_tuning.Rd | 16 ++++- man/mlr3tuning.asnyc_mlflow.Rd | 2 man/mlr_tuners_gensa.Rd | 22 +++--- man/mlr_tuners_internal.Rd | 2 man/mlr_tuners_nloptr.Rd | 29 ++------- tests/testthat/helper.R | 19 ++++++ tests/testthat/test_ArchiveAsyncTuning.R | 9 ++ tests/testthat/test_ArchiveAsyncTuningFrozen.R | 1 tests/testthat/test_AutoTuner.R | 9 +- tests/testthat/test_CallbackAsyncTuning.R | 17 +++++ tests/testthat/test_Tuner.R | 10 +-- tests/testthat/test_TunerAsyncDesignPoints.R | 1 tests/testthat/test_TunerAsyncGridSearch.R | 1 tests/testthat/test_TunerAsyncRandomSearch.R | 1 tests/testthat/test_TunerBatchIrace.R | 8 +- tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 61 +++++++++++++++++++ tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 62 +++++++++++++++++++ tests/testthat/test_error_handling.R | 25 ++----- tests/testthat/test_mlr_callbacks.R | 2 33 files changed, 396 insertions(+), 117 deletions(-)
Title: Simulation, Estimation and Reliability of Semi-Markov Models
Description: Performs parametric and non-parametric estimation and simulation
for multi-state discrete-time semi-Markov processes. For the parametric
estimation, several discrete distributions are considered for the sojourn
times: Uniform, Geometric, Poisson, Discrete Weibull and Negative Binomial.
The non-parametric estimation concerns the sojourn time distributions,
where no assumptions are done on the shape of distributions. Moreover, the
estimation can be done on the basis of one or several sample paths, with or
without censoring at the beginning or/and at the end of the sample paths.
Reliability indicators such as reliability, maintainability, availability,
BMP-failure rate, RG-failure rate, mean time to failure and mean time to
repair are available as well. The implemented methods are described in
Barbu, V.S., Limnios, N. (2008) <doi:10.1007/978-0-387-73173-5>,
Barbu, V.S., Limnios, N. (2008) <doi:10.1080/10485250701261913> and
Trevezas, S., Limnios, N. (2011) <doi:10.1080/1048 [...truncated...]
Author: Vlad Stefan Barbu [aut] ,
Florian Lecocq [aut],
Corentin Lothode [aut] ,
Nicolas Vergne [aut, cre]
Maintainer: Nicolas Vergne <nicolas.vergne@univ-rouen.fr>
Diff between smmR versions 1.0.3 dated 2021-08-03 and 1.0.5 dated 2025-11-07
smmR-1.0.3/smmR/man/aic.Rd |only smmR-1.0.3/smmR/man/bic.Rd |only smmR-1.0.3/smmR/man/loglik.Rd |only smmR-1.0.5/smmR/DESCRIPTION | 32 smmR-1.0.5/smmR/MD5 | 131 ++- smmR-1.0.5/smmR/NAMESPACE | 56 + smmR-1.0.5/smmR/R/RcppExports.R | 16 smmR-1.0.5/smmR/R/allgenerics.R | 208 +++-- smmR-1.0.5/smmR/R/convolution.R |only smmR-1.0.5/smmR/R/fit.param.f.dweibull.R | 16 smmR-1.0.5/smmR/R/fit.param.f.geom.R | 12 smmR-1.0.5/smmR/R/fit.param.f.nbinom.R | 16 smmR-1.0.5/smmR/R/fit.param.f.pois.R | 12 smmR-1.0.5/smmR/R/fit.param.fi.dweibull.R | 16 smmR-1.0.5/smmR/R/fit.param.fi.geom.R | 12 smmR-1.0.5/smmR/R/fit.param.fi.nbinom.R | 16 smmR-1.0.5/smmR/R/fit.param.fi.pois.R | 12 smmR-1.0.5/smmR/R/fit.param.fij.dweibull.R | 8 smmR-1.0.5/smmR/R/fit.param.fij.endcensoring.R | 18 smmR-1.0.5/smmR/R/fit.param.fij.geom.R | 4 smmR-1.0.5/smmR/R/fit.param.fij.nbinom.R | 8 smmR-1.0.5/smmR/R/fit.param.fij.pois.R | 4 smmR-1.0.5/smmR/R/fit.param.fj.dweibull.R | 8 smmR-1.0.5/smmR/R/fit.param.fj.endcensoring.R | 24 smmR-1.0.5/smmR/R/fit.param.fj.geom.R | 4 smmR-1.0.5/smmR/R/fit.param.fj.nbinom.R | 8 smmR-1.0.5/smmR/R/fit.param.fj.pois.R | 4 smmR-1.0.5/smmR/R/fitmm.R | 6 smmR-1.0.5/smmR/R/fitsmm.R | 11 smmR-1.0.5/smmR/R/get.H.R |only smmR-1.0.5/smmR/R/get.Niuj.R |only smmR-1.0.5/smmR/R/get.psi.R |only smmR-1.0.5/smmR/R/getProcesses.R |only smmR-1.0.5/smmR/R/matrixConvolution.R |only smmR-1.0.5/smmR/R/mm.R | 89 +- smmR-1.0.5/smmR/R/mmfit.R | 41 - smmR-1.0.5/smmR/R/processes.R | 6 smmR-1.0.5/smmR/R/smm.R | 253 +++---- smmR-1.0.5/smmR/R/smmR-package.R | 5 smmR-1.0.5/smmR/R/smmfit.R | 97 +- smmR-1.0.5/smmR/R/smmnonparametric.R | 125 ++- smmR-1.0.5/smmR/R/smmparametric.R | 110 ++- smmR-1.0.5/smmR/R/utils.R | 32 smmR-1.0.5/smmR/README.md | 122 +++ smmR-1.0.5/smmR/build/vignette.rds |binary smmR-1.0.5/smmR/inst/doc/Textile-Factory.R | 16 smmR-1.0.5/smmR/inst/doc/Textile-Factory.Rmd | 14 smmR-1.0.5/smmR/inst/doc/Textile-Factory.html | 785 +++++++++++++++------- smmR-1.0.5/smmR/inst/doc/smmR.R |only smmR-1.0.5/smmR/inst/doc/smmR.Rmd |only smmR-1.0.5/smmR/inst/doc/smmR.html |only smmR-1.0.5/smmR/man/convolution.Rd |only smmR-1.0.5/smmR/man/dot-failureRateBMP.Rd |only smmR-1.0.5/smmR/man/fitmm.Rd | 2 smmR-1.0.5/smmR/man/fitsmm.Rd | 2 smmR-1.0.5/smmR/man/get.H.Rd |only smmR-1.0.5/smmR/man/get.Kpar.Rd |only smmR-1.0.5/smmR/man/get.Niuj.Rd |only smmR-1.0.5/smmR/man/get.P.Rd |only smmR-1.0.5/smmR/man/get.Py.Rd |only smmR-1.0.5/smmR/man/get.f.Rd |only smmR-1.0.5/smmR/man/get.limitDistribution.Rd |only smmR-1.0.5/smmR/man/get.psi.Rd |only smmR-1.0.5/smmR/man/get.qy.Rd |only smmR-1.0.5/smmR/man/get.stationaryDistribution.Rd |only smmR-1.0.5/smmR/man/getKernel.Rd | 2 smmR-1.0.5/smmR/man/getProcesses.Rd |only smmR-1.0.5/smmR/man/matrixConvolution.Rd |only smmR-1.0.5/smmR/man/plot.smmfit.Rd | 26 smmR-1.0.5/smmR/man/smmR-package.Rd | 18 smmR-1.0.5/smmR/man/smmnonparametric.Rd | 1 smmR-1.0.5/smmR/src/Makevars | 1 smmR-1.0.5/smmR/src/Makevars.win | 1 smmR-1.0.5/smmR/src/RcppExports.cpp | 39 - smmR-1.0.5/smmR/src/utils.cpp | 66 - smmR-1.0.5/smmR/tests |only smmR-1.0.5/smmR/vignettes/Textile-Factory.Rmd | 14 smmR-1.0.5/smmR/vignettes/smmR.Rmd |only smmR-1.0.5/smmR/vignettes/smmR.tex |only 79 files changed, 1666 insertions(+), 863 deletions(-)
Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with several popular GUIs: 'Rgui', 'RStudio', 'Positron',
'VSCode', 'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible
with several functions and packages: 'source()',
'sys.source()', 'debugSource()' in 'RStudio',
'compiler::loadcmp()', 'utils::Sweave()', 'box::use()',
'knitr::knit()', 'plumber::plumb()', 'shiny::runApp()',
'package:targets', and 'testthat::source_file()'.
Author: Iris Simmons [aut, cre]
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.7.0 dated 2025-04-10 and 2.7.1 dated 2025-11-07
DESCRIPTION | 8 +-- MD5 | 46 ++++++++++----------- NEWS | 14 ++++++ R/ns-hooks.R | 85 ++++++++++++++++++++++++++++++++++------ R/promises.R | 5 -- R/thispath.R | 24 +++++------ build/stage23.rdb |binary build/this.path.pdf |binary configure | 2 configure.win | 2 inst/NEWS.in.Rd | 14 ++++++ man/ext.Rd | 4 - man/is.main.Rd | 35 +++++++++------- man/progArgs.Rd | 12 +++-- man/set.gui.path.Rd | 2 man/shFILE.Rd | 10 ++-- man/this.path.Rd | 16 ++++--- src/backports.h | 10 ++-- src/pathjoin.c | 4 - src/pathsplit.c | 2 src/rgui_path.c | 4 - src/shfile.c | 3 + tests/ext-tests.R | 8 +-- tests/faster-subsequent-times.R | 4 + 24 files changed, 211 insertions(+), 103 deletions(-)
Title: CAESAR: a Cross-Technology and Cross-Resolution Framework for
Spatial Omics Annotation
Description: Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. [...truncated...]
Author: Xiao Zhang [aut, cre],
Wei Liu [aut],
Jin Liu [aut]
Maintainer: Xiao Zhang <zhangxiao1994@cuhk.edu.cn>
This is a re-admission after prior archival of version 0.2.2 dated 2025-04-01
Diff between CAESAR.Suite versions 0.2.2 dated 2025-04-01 and 0.2.3 dated 2025-11-07
DESCRIPTION | 10 MD5 | 36 NAMESPACE | 1 R/caesar.R | 22 R/caesar_annotation.R | 16 data/Human_HK_genes.rda |binary data/Mouse_HK_genes.rda |binary data/toydata.rda |binary inst/doc/STMOB.R | 417 +++++----- inst/doc/STMOB.Rmd | 61 - inst/doc/STMOB.html | 928 +++++++---------------- inst/doc/XeniumBC.R | 537 ++++++------- inst/doc/XeniumBC.Rmd | 65 - inst/doc/XeniumBC.html | 1818 ++++++++++------------------------------------ man/CAESAR.annotation.Rd | 4 man/CAESAR.coembedding.Rd | 6 man/find.sig.genes.Rd | 5 vignettes/STMOB.Rmd | 61 - vignettes/XeniumBC.Rmd | 65 - 19 files changed, 1339 insertions(+), 2713 deletions(-)
Title: A Common Representation of Time Indices of Different Types
Description: Provides an easy-to-use tind class representing time indices
of different types (years, quarters, months, ISO 8601 weeks, dates,
time of day, date-time, and arbitrary integer/numeric indices).
Includes an extensive collection of functions for calendrical computations
(including business applications), index conversions, index parsing,
and other operations. Auxiliary classes representing time differences and
time intervals (with set operations and index matching functionality) are
also provided. All routines have been optimised for speed in order
to facilitate computations on large datasets. More details regarding
calendars in general and calendrical algorithms can be found in
"Calendar FAQ" by Claus Tøndering <https://www.tondering.dk/claus/calendar.html>.
Author: Grzegorz Klima [aut, cre, cph]
Maintainer: Grzegorz Klima <dever@post.pl>
This is a re-admission after prior archival of version 0.2.1 dated 2025-10-26
Diff between tind versions 0.2.1 dated 2025-10-26 and 0.2.2 dated 2025-11-07
DESCRIPTION | 8 MD5 | 72 +++--- inst/doc/calendar.html | 138 ++++++------- inst/po/en@quot/LC_MESSAGES/R-tind.mo |binary inst/po/pl/LC_MESSAGES/R-tind.mo |binary po/R-tind.pot | 4 tests/testthat/test-00-base-utils.R | 36 +-- tests/testthat/test-01-base-in.R | 48 ++-- tests/testthat/test-02-base-yqmwd.R | 276 +++++++++++++------------- tests/testthat/test-03-base-tz.R | 16 - tests/testthat/test-04-base-th.R | 270 +++++++++++++------------- tests/testthat/test-05-base-res.R | 110 +++++----- tests/testthat/test-06-base-pretty.R | 22 +- tests/testthat/test-07-base-locale.R | 24 +- tests/testthat/test-08-base-types.R | 56 ++--- tests/testthat/test-09-base-parse.R | 196 +++++++++---------- tests/testthat/test-10-tind.R | 72 +++--- tests/testthat/test-11-format_parse.R | 20 - tests/testthat/test-12-coercion.R | 144 ++++++------- tests/testthat/test-13-methods.R | 90 ++++---- tests/testthat/test-14-tdiff.R | 112 +++++----- tests/testthat/test-15-tinterval.R | 88 ++++---- tests/testthat/test-16-types.R | 22 +- tests/testthat/test-17-ops.R | 16 - tests/testthat/test-18-setops_match.R | 184 ++++++++--------- tests/testthat/test-19-tzone.R | 22 +- tests/testthat/test-20-tspan.R | 20 - tests/testthat/test-22-print_summ_str.R | 26 +- tests/testthat/test-23-round.R | 50 ++-- tests/testthat/test-24-cut.R | 10 tests/testthat/test-26-ord_reg.R | 78 +++---- tests/testthat/test-27-calendar.R | 330 ++++++++++++++++---------------- tests/testthat/test-28-calendars.R | 78 +++---- tests/testthat/test-29-business.R | 86 ++++---- tests/testthat/test-30-other.R | 78 +++---- tests/testthat/test-31-merge.R | 166 ++++++++-------- tests/testthat/test-32-pretty.R | 12 - 37 files changed, 1490 insertions(+), 1490 deletions(-)
Title: Interpolate Bathymetry and Quantify Physical Aquatic Habitat
Description: Offers bathymetric interpolation using Inverse Distance Weighted and Ordinary Kriging via the 'gstat' and 'terra' packages. Other functions focus on quantifying physical aquatic habitats (e.g., littoral, epliminion, metalimnion, hypolimnion) from interpolated digital elevation models (DEMs). Functions were designed to calculate these metrics across water levels for use in reservoirs but can be applied to any DEM and will provide values for fixed conditions. Parameters like Secchi disk depth or estimated photic zone, thermocline depth, and water level fluctuation depth are included in most functions.
Author: Tristan Blechinger [aut, cre] ,
Sean Bertalot [aut]
Maintainer: Tristan Blechinger <tblechin@uwyo.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2025-04-15
Diff between rLakeHabitat versions 1.0.0 dated 2025-04-15 and 1.0.1 dated 2025-11-07
DESCRIPTION | 15 ++++++++------- MD5 | 6 +++--- R/animBathy.R | 2 +- build/vignette.rds |binary 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.3.2 dated 2025-10-12 and 0.3.5 dated 2025-11-07
DESCRIPTION | 6 MD5 | 23 - NEWS.md | 7 R/cms_download_subset.r | 28 +- R/translate.R | 2 README.md | 416 +++++++++++++++---------------- inst/doc/translate.R | 2 inst/doc/translate.Rmd | 12 inst/doc/translate.html | 10 man/figures/README-download-subset-1.png |binary man/figures/README-leaflet-1.png |binary tests/testthat/test-translate.R |only vignettes/translate.Rmd | 12 13 files changed, 271 insertions(+), 247 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-16 0.11
2024-09-16 0.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-20 1.1-2
2025-05-07 1.1-1
2025-05-01 1.1-0
2022-08-13 1.0-8
2022-05-02 1.0-7
2021-11-18 1.0-5
2020-03-08 1.0-2
2020-01-30 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-29 0.6.1
2025-05-29 0.6.0
2025-01-27 0.5.0
2024-12-09 0.4.0
2024-08-26 0.3.0
2024-07-31 0.2.0
2024-07-02 0.1.0
Title: Calculate Sun Position, Sunrise, Sunset, Solar Noon and Twilight
Description: Provides a set of convenient functions for calculating sun-related information, including the sun's position (elevation and azimuth), and the times of sunrise, sunset, solar noon, and twilight for any given geographical location on Earth. These calculations are based on equations provided by the National Oceanic & Atmospheric Administration (NOAA) <https://gml.noaa.gov/grad/solcalc/calcdetails.html> as described in "Astronomical Algorithms" by Jean Meeus (1991, ISBN: 978-0-943396-35-4).
Author: Roger Bivand [aut] ,
Adriaan M. Dokter [ctb, cre] ,
Pieter Huybrechts [ctb] ,
Sebastian Luque [aut],
Greg Pelletier [ctb],
Alexander Tedeschi [ctb]
Maintainer: Adriaan M. Dokter <amd427@cornell.edu>
Diff between suntools versions 1.0.1 dated 2024-11-20 and 1.1.0 dated 2025-11-07
DESCRIPTION | 19 +++++++++++-------- MD5 | 17 +++++++++-------- NEWS.md | 8 ++++++-- R/crepuscule.R | 2 +- R/solarnoon.R | 2 +- R/sun.R | 14 ++++++++++++++ R/sunriset.R | 2 +- README.md | 2 +- man/dls_correction.Rd |only tests/testthat/test-sun-methods.R | 24 ++++++++++++++++++++++++ 10 files changed, 68 insertions(+), 22 deletions(-)
Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.2 dated 2025-09-21 and 0.3 dated 2025-11-07
ReliaGrowR-0.2/ReliaGrowR/inst/paper/paper.html |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/_snaps/gof |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-duane.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-gof.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rdt.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-rga.R |only ReliaGrowR-0.2/ReliaGrowR/tests/testthat/test-weibull_to_rga.R |only ReliaGrowR-0.3/ReliaGrowR/DESCRIPTION | 10 ReliaGrowR-0.3/ReliaGrowR/MD5 | 81 +- ReliaGrowR-0.3/ReliaGrowR/NAMESPACE | 4 ReliaGrowR-0.3/ReliaGrowR/NEWS.md | 10 ReliaGrowR-0.3/ReliaGrowR/R/duane.R | 350 ++++++++- ReliaGrowR-0.3/ReliaGrowR/R/gof.R | 86 +- ReliaGrowR-0.3/ReliaGrowR/R/grwr_api.R |only ReliaGrowR-0.3/ReliaGrowR/R/rdt.R | 172 +++- ReliaGrowR-0.3/ReliaGrowR/R/rga.R | 372 +++++++++- ReliaGrowR-0.3/ReliaGrowR/R/srr-stats-standards.R |only ReliaGrowR-0.3/ReliaGrowR/R/testdata.r |only ReliaGrowR-0.3/ReliaGrowR/R/weibull_to_rga.R | 84 +- ReliaGrowR-0.3/ReliaGrowR/README.md | 24 ReliaGrowR-0.3/ReliaGrowR/build/vignette.rds |binary ReliaGrowR-0.3/ReliaGrowR/data |only ReliaGrowR-0.3/ReliaGrowR/inst/CITATION | 9 ReliaGrowR-0.3/ReliaGrowR/inst/WORDLIST | 7 ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.R | 26 ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.Rmd | 57 + ReliaGrowR-0.3/ReliaGrowR/inst/doc/RGA.html | 72 + ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.R |only ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.Rmd |only ReliaGrowR-0.3/ReliaGrowR/inst/doc/data.html |only ReliaGrowR-0.3/ReliaGrowR/inst/paper/paper.Rmd | 2 ReliaGrowR-0.3/ReliaGrowR/man/duane.Rd | 52 + ReliaGrowR-0.3/ReliaGrowR/man/grwr_api.Rd |only ReliaGrowR-0.3/ReliaGrowR/man/plot.rga.Rd | 6 ReliaGrowR-0.3/ReliaGrowR/man/ppplot.rga.Rd | 6 ReliaGrowR-0.3/ReliaGrowR/man/print.rdt.Rd | 2 ReliaGrowR-0.3/ReliaGrowR/man/print.rga.Rd | 2 ReliaGrowR-0.3/ReliaGrowR/man/qqplot.rga.Rd | 4 ReliaGrowR-0.3/ReliaGrowR/man/rdt.Rd | 16 ReliaGrowR-0.3/ReliaGrowR/man/rga.Rd | 64 + ReliaGrowR-0.3/ReliaGrowR/man/testdata.Rd |only ReliaGrowR-0.3/ReliaGrowR/man/weibull_to_rga.Rd | 28 ReliaGrowR-0.3/ReliaGrowR/tests/spelling.R | 9 ReliaGrowR-0.3/ReliaGrowR/tests/testthat/Rplots.pdf |binary ReliaGrowR-0.3/ReliaGrowR/tests/testthat/_snaps/srr-rga |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-duane.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-gof.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-rga.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-testdata.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr-weibull_to_rga.R |only ReliaGrowR-0.3/ReliaGrowR/tests/testthat/test-srr_rdt.R |only ReliaGrowR-0.3/ReliaGrowR/vignettes/RGA.Rmd | 57 + ReliaGrowR-0.3/ReliaGrowR/vignettes/data.Rmd |only 53 files changed, 1368 insertions(+), 244 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb] ,
Lona Koers [ctb],
Alexander Winterstet [...truncated...]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.9.0 dated 2025-07-31 and 0.10.0 dated 2025-11-07
DESCRIPTION | 49 +- MD5 | 288 +++++++------- NAMESPACE | 6 NEWS.md | 16 R/FilterEnsemble.R |only R/Graph.R | 59 +-- R/GraphLearner.R | 12 R/PipeOp.R | 25 - R/PipeOpBoxCox.R | 3 R/PipeOpClassifAvg.R | 42 +- R/PipeOpDateFeatures.R | 221 ++++++----- R/PipeOpEnsemble.R | 19 R/PipeOpFeatureUnion.R | 13 R/PipeOpFixFactors.R | 22 + R/PipeOpInfo.R |only R/PipeOpIsomap.R |only R/PipeOpLearnerCV.R | 289 ++++++++++++++ R/PipeOpLearnerQuantiles.R | 2 R/PipeOpNMF.R | 60 ++- R/PipeOpPCA.R | 4 R/PipeOpRegrAvg.R | 177 ++++++++- R/PipeOpRemoveConstants.R | 2 R/PipeOpTrafo.R | 31 + R/PipeOpVtreat.R | 26 - R/TaskRegr_boston_housing.R | 4 R/bibentries.R | 10 R/mlr_graphs.R | 2 R/mlr_pipeops.R | 2 R/multiplicity.R | 2 R/preproc.R | 7 R/zzz.R | 24 + inst/doc/extending.html | 11 inst/testthat/helper_functions.R | 2 man/PipeOp.Rd | 2 man/PipeOpEncodePL.Rd | 2 man/PipeOpEnsemble.Rd | 2 man/PipeOpImpute.Rd | 2 man/PipeOpTargetTrafo.Rd | 2 man/PipeOpTaskPreproc.Rd | 2 man/PipeOpTaskPreprocSimple.Rd | 2 man/mlr_filters_ensemble.Rd |only man/mlr_graphs.Rd | 2 man/mlr_graphs_bagging.Rd | 2 man/mlr_graphs_ovr.Rd | 2 man/mlr_graphs_robustify.Rd | 2 man/mlr_graphs_stacking.Rd | 2 man/mlr_graphs_targettrafo.Rd | 2 man/mlr_learners_graph.Rd | 2 man/mlr_pipeops.Rd | 4 man/mlr_pipeops_adas.Rd | 4 man/mlr_pipeops_blsmote.Rd | 4 man/mlr_pipeops_boxcox.Rd | 4 man/mlr_pipeops_branch.Rd | 2 man/mlr_pipeops_chunk.Rd | 2 man/mlr_pipeops_classbalancing.Rd | 2 man/mlr_pipeops_classifavg.Rd | 34 + man/mlr_pipeops_classweights.Rd | 2 man/mlr_pipeops_colapply.Rd | 2 man/mlr_pipeops_collapsefactors.Rd | 2 man/mlr_pipeops_colroles.Rd | 2 man/mlr_pipeops_copy.Rd | 2 man/mlr_pipeops_datefeatures.Rd | 47 +- man/mlr_pipeops_decode.Rd | 2 man/mlr_pipeops_encode.Rd | 2 man/mlr_pipeops_encodeimpact.Rd | 2 man/mlr_pipeops_encodelmer.Rd | 4 man/mlr_pipeops_encodeplquantiles.Rd | 2 man/mlr_pipeops_encodepltree.Rd | 4 man/mlr_pipeops_featureunion.Rd | 2 man/mlr_pipeops_filter.Rd | 4 man/mlr_pipeops_fixfactors.Rd | 20 + man/mlr_pipeops_histbin.Rd | 2 man/mlr_pipeops_ica.Rd | 4 man/mlr_pipeops_imputeconstant.Rd | 2 man/mlr_pipeops_imputehist.Rd | 2 man/mlr_pipeops_imputelearner.Rd | 4 man/mlr_pipeops_imputemean.Rd | 2 man/mlr_pipeops_imputemedian.Rd | 2 man/mlr_pipeops_imputemode.Rd | 2 man/mlr_pipeops_imputeoor.Rd | 2 man/mlr_pipeops_imputesample.Rd | 2 man/mlr_pipeops_info.Rd |only man/mlr_pipeops_isomap.Rd |only man/mlr_pipeops_kernelpca.Rd | 4 man/mlr_pipeops_learner.Rd | 4 man/mlr_pipeops_learner_cv.Rd | 31 + man/mlr_pipeops_learner_pi_cvplus.Rd | 4 man/mlr_pipeops_learner_quantiles.Rd | 4 man/mlr_pipeops_missind.Rd | 2 man/mlr_pipeops_modelmatrix.Rd | 2 man/mlr_pipeops_multiplicityexply.Rd | 2 man/mlr_pipeops_multiplicityimply.Rd | 2 man/mlr_pipeops_mutate.Rd | 2 man/mlr_pipeops_nearmiss.Rd | 4 man/mlr_pipeops_nmf.Rd | 9 man/mlr_pipeops_nop.Rd | 2 man/mlr_pipeops_ovrsplit.Rd | 4 man/mlr_pipeops_ovrunite.Rd | 4 man/mlr_pipeops_pca.Rd | 6 man/mlr_pipeops_proxy.Rd | 4 man/mlr_pipeops_quantilebin.Rd | 2 man/mlr_pipeops_randomprojection.Rd | 2 man/mlr_pipeops_randomresponse.Rd | 4 man/mlr_pipeops_regravg.Rd | 94 ++++ man/mlr_pipeops_removeconstants.Rd | 2 man/mlr_pipeops_renamecolumns.Rd | 2 man/mlr_pipeops_replicate.Rd | 2 man/mlr_pipeops_rowapply.Rd | 2 man/mlr_pipeops_scale.Rd | 2 man/mlr_pipeops_scalemaxabs.Rd | 2 man/mlr_pipeops_scalerange.Rd | 2 man/mlr_pipeops_select.Rd | 2 man/mlr_pipeops_smote.Rd | 4 man/mlr_pipeops_smotenc.Rd | 4 man/mlr_pipeops_spatialsign.Rd | 2 man/mlr_pipeops_subsample.Rd | 2 man/mlr_pipeops_targetinvert.Rd | 36 + man/mlr_pipeops_targetmutate.Rd | 4 man/mlr_pipeops_targettrafoscalerange.Rd | 4 man/mlr_pipeops_textvectorizer.Rd | 4 man/mlr_pipeops_threshold.Rd | 4 man/mlr_pipeops_tomek.Rd | 4 man/mlr_pipeops_tunethreshold.Rd | 4 man/mlr_pipeops_unbranch.Rd | 2 man/mlr_pipeops_updatetarget.Rd | 4 man/mlr_pipeops_vtreat.Rd | 4 man/mlr_pipeops_yeojohnson.Rd | 4 man/po.Rd | 2 man/ppl.Rd | 2 man/preproc.Rd | 9 tests/testthat/_snaps |only tests/testthat/test_Graph.R | 14 tests/testthat/test_PipeOp.R | 23 - tests/testthat/test_filter_ensemble.R |only tests/testthat/test_meta.R | 4 tests/testthat/test_mlr_graphs_robustify.R | 29 + tests/testthat/test_multiplicities.R | 2 tests/testthat/test_pipeop_classifavg.R |only tests/testthat/test_pipeop_classweights.R | 24 + tests/testthat/test_pipeop_datefeatures.R | 104 ++--- tests/testthat/test_pipeop_featureunion.R | 31 + tests/testthat/test_pipeop_impute.R | 26 + tests/testthat/test_pipeop_imputelearner.R | 26 + tests/testthat/test_pipeop_info.R |only tests/testthat/test_pipeop_isomap.R |only tests/testthat/test_pipeop_learnercv.R | 522 ++++++++++++++++++++++++++- tests/testthat/test_pipeop_nmf.R | 85 ++++ tests/testthat/test_pipeop_regravg.R |only tests/testthat/test_pipeop_removeconstants.R | 16 tests/testthat/test_pipeop_task_preproc.R | 139 +++++++ tests/testthat/test_pipeop_textvectorizer.R | 5 151 files changed, 2458 insertions(+), 536 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Creates styled tables for data presentation. Export to HTML, LaTeX,
RTF, 'Word', 'Excel', 'PowerPoint', 'typst', SVG and PNG. Simple, modern
interface to manipulate borders, size, position, captions, colours,
text styles and number formatting. Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function to create regression tables, and 'quick_*'
one-liners to print tables to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 5.7.0 dated 2025-08-18 and 5.8.0 dated 2025-11-07
huxtable-5.7.0/huxtable/R/roxygen-functions.R |only huxtable-5.7.0/huxtable/inst/doc/design-principles-html.html |only huxtable-5.7.0/huxtable/inst/doc/design-principles-html.html.asis |only huxtable-5.7.0/huxtable/inst/doc/design-principles-pdf.pdf |only huxtable-5.7.0/huxtable/inst/doc/design-principles-pdf.pdf.asis |only huxtable-5.7.0/huxtable/inst/doc/huxreg-html.html |only huxtable-5.7.0/huxtable/inst/doc/huxreg-html.html.asis |only huxtable-5.7.0/huxtable/inst/doc/huxreg-pdf.pdf |only huxtable-5.7.0/huxtable/inst/doc/huxreg-pdf.pdf.asis |only huxtable-5.7.0/huxtable/inst/doc/huxtable-html.html |only huxtable-5.7.0/huxtable/inst/doc/huxtable-html.html.asis |only huxtable-5.7.0/huxtable/inst/doc/huxtable-pdf.pdf |only huxtable-5.7.0/huxtable/inst/doc/huxtable-pdf.pdf.asis |only huxtable-5.7.0/huxtable/inst/doc/themes-html.html |only huxtable-5.7.0/huxtable/inst/doc/themes-html.html.asis |only huxtable-5.7.0/huxtable/vignettes/design-principles-html.html.asis |only huxtable-5.7.0/huxtable/vignettes/design-principles-pdf.pdf.asis |only huxtable-5.7.0/huxtable/vignettes/huxreg-html.html.asis |only huxtable-5.7.0/huxtable/vignettes/huxreg-pdf.pdf.asis |only huxtable-5.7.0/huxtable/vignettes/huxtable-html.html.asis |only huxtable-5.7.0/huxtable/vignettes/huxtable-pdf.pdf.asis |only huxtable-5.7.0/huxtable/vignettes/themes-html.html.asis |only huxtable-5.8.0/huxtable/DESCRIPTION | 22 - huxtable-5.8.0/huxtable/MD5 | 54 +--- huxtable-5.8.0/huxtable/NEWS.md | 9 huxtable-5.8.0/huxtable/R/clean-contents.R | 2 huxtable-5.8.0/huxtable/R/misc.R | 120 +++++----- huxtable-5.8.0/huxtable/R/properties-cell.R | 2 huxtable-5.8.0/huxtable/R/property-helpers.R | 4 huxtable-5.8.0/huxtable/README.md | 73 +++--- huxtable-5.8.0/huxtable/build/vignette.rds |binary huxtable-5.8.0/huxtable/inst/doc/huxreg.R |only huxtable-5.8.0/huxtable/inst/doc/huxreg.Rmd |only huxtable-5.8.0/huxtable/inst/doc/huxreg.html |only huxtable-5.8.0/huxtable/inst/doc/huxtable.R |only huxtable-5.8.0/huxtable/inst/doc/huxtable.Rmd |only huxtable-5.8.0/huxtable/inst/doc/huxtable.html |only huxtable-5.8.0/huxtable/man/hux_logo.Rd | 12 - huxtable-5.8.0/huxtable/man/huxtable-news.Rd | 11 huxtable-5.8.0/huxtable/man/number_format.Rd | 2 huxtable-5.8.0/huxtable/tests/testthat/table-tester-2.Rmd | 2 huxtable-5.8.0/huxtable/vignettes/huxreg.Rmd |only huxtable-5.8.0/huxtable/vignettes/huxtable.Rmd |only 43 files changed, 161 insertions(+), 152 deletions(-)