Title: Weierstrass and Jacobi Elliptic Functions
Description: A suite of elliptic and related functions including Weierstrass and
Jacobi forms. Also includes various tools for manipulating and
visualizing complex functions.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between elliptic versions 1.5-0 dated 2025-09-18 and 1.5-1 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/elliptic.pdf |binary inst/doc/residuetheorem.R | 10 +++++----- inst/doc/residuetheorem.Rnw | 36 +++++++++++++++++++++--------------- inst/doc/residuetheorem.pdf |binary man/theta.neville.Rd | 2 +- vignettes/residuetheorem.Rnw | 36 +++++++++++++++++++++--------------- 11 files changed, 65 insertions(+), 49 deletions(-)
Title: Effects of External Conditions on Air Quality
Description: Analyzes the impact of external conditions on air quality using counterfactual approaches, featuring methods for data preparation, modeling, and visualization.
Author: Raphael Franke [aut],
Imke Voss [aut, cre]
Maintainer: Imke Voss <imke.voss@uba.de>
Diff between ubair versions 1.1.0 dated 2025-01-27 and 1.1.1 dated 2025-11-10
DESCRIPTION | 6 +-- MD5 | 44 ++++++++++++----------- NEWS.md | 5 ++ R/counterfactual_model.R | 2 - R/data_loading.R | 9 +++- R/sample_data_DESN025.R | 39 ++++---------------- R/utils.R | 2 - R/visualisation.R | 4 +- README.md | 26 ++----------- build/vignette.rds |binary inst/doc/neun_euro_ticket_demonstrator.R |only inst/doc/neun_euro_ticket_demonstrator.Rmd |only inst/doc/neun_euro_ticket_demonstrator.html |only inst/doc/user_sample_1.html | 4 +- inst/doc/user_sample_2.html | 2 - inst/doc/user_sample_3.html | 6 +-- inst/sticker/stickers-ubair-1.png |binary man/figures/README-counterfactual-scenario-1.png |binary man/figures/README-feature_importance-1.png |binary man/figures/README-feature_importance-2.png |binary man/figures/README-plot-meteo-data-1.png |binary man/load_uba_data_from_dir.Rd | 2 + man/run_counterfactual.Rd | 2 - man/sample_data_DESN025.Rd | 35 ++++-------------- vignettes/neun_euro_ticket_demonstrator.Rmd |only 25 files changed, 72 insertions(+), 116 deletions(-)
Title: Build a Docker Image from a Directory or Project
Description: Simple utilities to generate a Dockerfile from a directory or
project, build the corresponding Docker image, push the image to
DockerHub, and publicly share the project via Binder.
Author: Daniel Molitor [aut, cph, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between tugboat versions 0.1.4 dated 2025-10-31 and 0.1.5 dated 2025-11-10
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 13 +++++ R/binderize.R | 5 ++ R/build.R | 100 ++++++++++++++++++++++++++++++++-------- R/utils.R | 13 +++++ man/build.Rd | 6 ++ tests/testthat/test-binderize.R | 6 ++ 8 files changed, 132 insertions(+), 31 deletions(-)
Title: A Unified Pipeline for Pupillometry Data
Description: Provides a unified pipeline to clean, prepare, plot,
and run basic analyses on pupillometry experiments.
Author: Samuel Forbes [aut, cre],
David Robinson [ctb]
Maintainer: Samuel Forbes <samuel.h.forbes@gmail.com>
Diff between PupillometryR versions 0.0.5 dated 2023-09-15 and 0.0.6 dated 2025-11-10
DESCRIPTION | 12 +++--- MD5 | 30 +++++++-------- NEWS.md | 5 ++ R/clean_and_downsample.R | 59 ++++++++++++++++++------------- R/functional_data.R | 1 R/make_smoothed_data.R | 17 +++++--- R/plot_pupil_data.R | 1 README.md | 15 ++++--- build/vignette.rds |binary inst/doc/PupillometryR.R | 2 - inst/doc/PupillometryR.Rmd | 4 +- inst/doc/PupillometryR.html | 56 +++++++++++++++-------------- man/clean_missing_data.Rd | 41 ++++++++++++--------- man/figures/README-unnamed-chunk-2-1.png |binary man/interpolate_data.Rd | 5 ++ vignettes/PupillometryR.Rmd | 4 +- 16 files changed, 147 insertions(+), 105 deletions(-)
Title: Estimating Peer Effects Using Partial Network Data
Description: Implements IV-estimator and Bayesian estimator for linear-in-means Spatial Autoregressive (SAR) model (see LeSage, 1997 <doi:10.1177/016001769702000107>; Lee, 2004 <doi:10.1111/j.1468-0262.2004.00558.x>; Bramoullé et al., 2009 <doi:10.1016/j.jeconom.2008.12.021>), while assuming that only a partial information about the network structure is available. Examples are when the adjacency matrix is not fully observed or when only consistent estimation of the network formation model is available (see Boucher and Houndetoungan, 2025 <doi:10.48550/arXiv.2509.08145>).
Author: Vincent Boucher [aut],
Aristide Houndetoungan [cre, aut]
Maintainer: Aristide Houndetoungan <ahoundetoungan@ecn.ulaval.ca>
Diff between PartialNetwork versions 1.1.1 dated 2025-09-24 and 1.1.2 dated 2025-11-10
DESCRIPTION | 12 +-- MD5 | 36 ++++++---- NAMESPACE | 3 NEWS.md | 11 ++- R/RcppExports.R | 4 + R/mcmcSAR.R | 5 - R/simIV.R | 88 +++++++++++++------------- R/simSAR.R |only R/smmSAR.R | 4 - inst/CITATION |only inst/doc/PartialNetwork_vignette.R | 102 +++++++++++++----------------- inst/doc/PartialNetwork_vignette.Rmd | 113 +++++++++++++++------------------- inst/doc/PartialNetwork_vignette.pdf |binary man/mcmcSAR.Rd | 5 - man/sim.IV.Rd | 88 +++++++++++++------------- man/simSAR.Rd |only man/smmSAR.Rd | 4 - src/RcppExports.cpp | 19 +++++ src/simSAR.cpp |only vignettes/PartialNetwork_vignette.Rmd | 113 +++++++++++++++------------------- vignettes/References.bib | 8 +- 21 files changed, 313 insertions(+), 302 deletions(-)
More information about PartialNetwork at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-25 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-10 0.1.1
2020-06-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-23 0.3.3
2018-09-12 0.2.0
2017-02-08 0.1.2
2016-12-29 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-06 0.4.1
2024-11-29 0.3.1
Title: Access to the 'RESOURCECODE' Hindcast Database
Description: Utility functions to download data from the 'RESOURCECODE'
hindcast database of sea-states, time series of sea-state parameters
and time series of 1D and 2D wave spectra. See
<https://resourcecode.ifremer.fr> for more details about the available
data. Also provides facilities to plot and analyse downloaded data,
such as computing the sea-state parameters from both the 1D and 2D
surface elevation variance spectral density.
Author: Nicolas Raillard [aut, cre]
Maintainer: Nicolas Raillard <nicolas.raillard@ifremer.fr>
Diff between resourcecode versions 0.4.0 dated 2025-10-22 and 0.5.0 dated 2025-11-10
DESCRIPTION | 14 - MD5 | 36 +-- NAMESPACE | 1 NEWS.md | 7 R/RcppExports.R | 4 R/download_data.R | 357 ++++++++++++++++++----------------- R/resourcecode-package.R | 22 +- R/spectral_data_download.R | 62 ++++-- R/sysdata.rda |binary R/weather_windows.R |only data/rscd_dir.rda |binary data/rscd_freq.rda |binary man/compute_sea_state_2d_spectrum.Rd | 2 man/get_parameters.Rd | 3 man/weather_windows.Rd |only src/RcppExports.cpp | 15 + src/ww_calc_cpp.cpp |only tests/testthat.R | 24 +- tests/testthat/Rplots.pdf |binary tests/testthat/test-data_download.R | 317 ++++++++++++++++++------------- tests/testthat/test_ww_calc.R |only 21 files changed, 493 insertions(+), 371 deletions(-)
Title: Detecting Extremal Values in a Normal Linear Model
Description: Provides a method to detect values poorly explained by a Gaussian linear model. The procedure is based on the maximum of the absolute value of the studentized residuals, which is a parameter-free statistic. This approach generalizes several procedures used to detect abnormal values during longitudinal monitoring of biological markers. For methodological details, see: Berthelot G., Saulière G., Dedecker J. (2025). "DEViaN-LM An R Package for Detecting Abnormal Values in the Gaussian Linear Model". HAL Id: hal-05230549. <https://hal.science/hal-05230549>.
Author: Guillaume Sauliere [aut, cre] ,
Geoffroy Berthelot [aut],
Jerome Dedecker [aut]
Maintainer: Guillaume Sauliere <guillaumesauliere@hotmail.com>
Diff between devianLM versions 1.0.4 dated 2025-10-05 and 1.0.5 dated 2025-11-10
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 8 +++ R/devianlm_stats.R | 4 - man/devianlm_stats.Rd | 126 +++++++++++++++++++++++++------------------------- 5 files changed, 81 insertions(+), 73 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-04 0.5.7
2023-05-10 0.5.6.1
2023-03-28 0.5.5
2023-03-13 0.5.4
2023-02-20 0.5.3
2023-01-30 0.5.1
2023-01-13 0.5.0
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.3.0 dated 2025-11-06 and 1.3.2 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/internal_hazard.R | 2 +- R/internal_misc.R | 33 ++++++++++++++++----------------- R/internal_survival.R | 23 +++++++++++------------ tests/testthat/test_survival.R | 8 ++++++++ 6 files changed, 44 insertions(+), 38 deletions(-)
Title: A Fast Permutation-Based Split-Half Reliability Algorithm
Description: Accurately estimates the reliability of cognitive tasks using a fast and flexible permutation-based split-half reliability algorithm that supports stratified splitting while maintaining equal split sizes. See Kahveci, Bathke, and Blechert (2025) <doi:10.3758/s13423-024-02597-y> for details.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@plus.ac.at>
Diff between rapidsplithalf versions 0.5 dated 2025-11-06 and 0.6 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/rapidsplit.R | 29 ++++++++--------------------- inst/doc/rapidsplithalf.html | 14 +++++++------- man/figures/README-iatrel-1.png |binary man/figures/README-plotter-1.png |binary man/figures/README-plotter2-1.png |binary man/rapidsplit.Rd | 27 +++++++-------------------- 8 files changed, 32 insertions(+), 58 deletions(-)
More information about rapidsplithalf at CRAN
Permanent link
Title: 'Canvas' LMS API Integration
Description: Allow R users to interact with the 'Canvas' Learning Management System (LMS) API (see
<https://canvas.instructure.com/doc/api/all_resources.html> for details).
It provides a set of functions to access and manipulate course data, assignments, grades, users,
and other resources available through the 'Canvas' API.
Author: Tomer Iwan [aut, cre],
Niels Smits [ctb] ,
VU Analytics [cph]
Maintainer: Tomer Iwan <t.iwan@vu.nl>
Diff between vvcanvas versions 0.0.6 dated 2025-09-05 and 0.0.7 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 13 +++++++++++-- R/get_assignment_submissions.R | 32 ++++++++++++++++++-------------- README.md | 9 --------- man/get_assignment_submissions.Rd | 18 +++++++----------- 6 files changed, 44 insertions(+), 44 deletions(-)
Title: Provider-Agnostic OAuth Authentication for 'shiny' Applications
Description: Provides a simple, configurable, provider-agnostic 'OAuth 2.0' and
'OpenID Connect' (OIDC) authentication framework for 'shiny' applications
using 'S7' classes. Defines providers, clients, and tokens, as well
as various supporting functions and a 'shiny' module. Features include
cross-site request forgery (CSRF) protection, state encryption,
'Proof Key for Code Exchange' (PKCE) handling, validation of OIDC identity
tokens (nonces, signatures, claims), automatic user info retrieval, asynchronous
flows, and hooks for audit logging.
Author: Luka Koning [aut, cre, cph]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between shinyOAuth versions 0.1.1 dated 2025-11-09 and 0.1.3 dated 2025-11-10
DESCRIPTION | 6 LICENSE | 2 MD5 | 36 ++-- NAMESPACE | 76 +++++----- NEWS.md | 6 README.md | 14 + build/vignette.rds |binary inst/doc/authentication-flow.Rmd | 162 +++++++++++++-------- inst/doc/authentication-flow.html | 227 +++++++++++++++--------------- man/handle_callback.Rd | 166 ++++++++++----------- man/prepare_call.Rd | 120 +++++++-------- man/state_payload_decrypt_validate.Rd | 48 +++--- man/state_store_get_remove.Rd | 46 +++--- man/use_shinyOAuth.Rd | 66 ++++---- tests/testthat/test-introspect-token.R | 1 tests/testthat/test-module-server-async.R | 3 tests/testthat/test-refresh-races.R | 1 tests/testthat/test-state-fail-delay.R | 3 vignettes/authentication-flow.Rmd | 162 +++++++++++++-------- 19 files changed, 630 insertions(+), 515 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: Random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, Gumbel, binomial, Poisson, Dirac, uniform or circular von Mises parametric families.
Author: Marko Nagode [aut, cre] ,
Branislav Panic [ctb] ,
Jernej Klemenc [ctb] ,
Simon Oman [ctb]
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.17.0 dated 2025-11-06 and 2.17.1 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- R/EMMIX.R | 2 +- R/RCLRMIX.R | 2 +- R/RCLSMIX.R | 4 ++-- R/REBMIX.R | 2 +- R/RNGMIX.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 2 +- inst/doc/rebmix.Rnw | 4 ++-- inst/doc/rebmix.pdf |binary src/init.c | 8 ++++---- src/rebmixf.cpp | 2 +- src/rngmixf.cpp | 2 +- vignettes/rebmix.Rnw | 4 ++-- 16 files changed, 35 insertions(+), 35 deletions(-)
Title: Systematic Conservation Prioritization in R
Description: Systematic conservation prioritization using mixed integer linear
programming (MILP). It provides a flexible interface for building and
solving conservation planning problems. Once built, conservation planning
problems can be solved using a variety of commercial and open-source exact
algorithm solvers. By using exact algorithm solvers, solutions can be
generated that are guaranteed to be optimal (or within a pre-specified
optimality gap). Furthermore, conservation problems can be constructed to
optimize the spatial allocation of different management actions or zones,
meaning that conservation practitioners can identify solutions that benefit
multiple stakeholders. To solve large-scale or complex conservation
planning problems, users should install the Gurobi optimization software
(available from <https://www.gurobi.com/>) and the 'gurobi' R package (see
Gurobi Installation Guide vignette for details). Users can also install the
IBM CPLEX software (<https://www.ibm.com/products [...truncated...]
Author: Jeffrey O Hanson [aut] ,
Richard Schuster [aut, cre] ,
Nina Morrell [aut],
Matthew Strimas-Mackey [aut] ,
Brandon P M Edwards [aut] ,
Matthew E Watts [aut],
Peter Arcese [aut] ,
Joseph R Bennett [aut] ,
Hugh P Possingham [aut]
Maintainer: Richard Schuster <richard.schuster@glel.carleton.ca>
Diff between prioritizr versions 8.0.6 dated 2025-01-09 and 8.1.0 dated 2025-11-10
prioritizr-8.0.6/prioritizr/R/add_loglinear_targets.R |only prioritizr-8.0.6/prioritizr/R/all_binary.R |only prioritizr-8.0.6/prioritizr/R/all_columns_any_finite.R |only prioritizr-8.0.6/prioritizr/R/all_columns_inherit.R |only prioritizr-8.0.6/prioritizr/R/all_finite.R |only prioritizr-8.0.6/prioritizr/R/all_positive.R |only prioritizr-8.0.6/prioritizr/R/all_proportion.R |only prioritizr-8.0.6/prioritizr/R/any_nonNA.R |only prioritizr-8.0.6/prioritizr/R/any_nonzero.R |only prioritizr-8.0.6/prioritizr/R/as_Matrix.R |only prioritizr-8.0.6/prioritizr/R/assertions.R |only prioritizr-8.0.6/prioritizr/R/assertions_class.R |only prioritizr-8.0.6/prioritizr/R/assertions_misc.R |only prioritizr-8.0.6/prioritizr/R/assertions_raster.R |only prioritizr-8.0.6/prioritizr/R/assertions_sf.R |only prioritizr-8.0.6/prioritizr/R/assertions_vector.R |only prioritizr-8.0.6/prioritizr/R/cli.R |only prioritizr-8.0.6/prioritizr/R/get_crs.R |only prioritizr-8.0.6/prioritizr/R/is_numeric_values.R |only prioritizr-8.0.6/prioritizr/R/is_same_crs.R |only prioritizr-8.0.6/prioritizr/R/is_spatial_extents_overlap.R |only prioritizr-8.0.6/prioritizr/R/list_text.R |only prioritizr-8.0.6/prioritizr/R/repr.R |only prioritizr-8.0.6/prioritizr/R/st_geometry_classes.R |only prioritizr-8.0.6/prioritizr/man/add_loglinear_targets.Rd |only prioritizr-8.0.6/prioritizr/src/rcpp_apply_feature_weights.cpp |only prioritizr-8.0.6/prioritizr/tests/testthat/_snaps/assertions.md |only prioritizr-8.0.6/prioritizr/tests/testthat/test_add_boundary_penalties.R |only prioritizr-8.0.6/prioritizr/tests/testthat/test_add_loglinear_targets.R |only prioritizr-8.0.6/prioritizr/tests/testthat/test_assertions.R |only prioritizr-8.1.0/prioritizr/DESCRIPTION | 141 prioritizr-8.1.0/prioritizr/MD5 | 995 + prioritizr-8.1.0/prioritizr/NAMESPACE | 760 - prioritizr-8.1.0/prioritizr/NEWS.md | 5386 +++++----- prioritizr-8.1.0/prioritizr/R/ConservationModifier-class.R | 232 prioritizr-8.1.0/prioritizr/R/ConservationProblem-class.R | 2136 ++- prioritizr-8.1.0/prioritizr/R/Constraint-class.R | 66 prioritizr-8.1.0/prioritizr/R/Decision-class.R | 66 prioritizr-8.1.0/prioritizr/R/Objective-class.R | 89 prioritizr-8.1.0/prioritizr/R/OptimizationProblem-class.R | 524 prioritizr-8.1.0/prioritizr/R/OptimizationProblem-methods.R | 717 - prioritizr-8.1.0/prioritizr/R/Penalty-class.R | 66 prioritizr-8.1.0/prioritizr/R/Portfolio-class.R | 68 prioritizr-8.1.0/prioritizr/R/RcppExports.R | 442 prioritizr-8.1.0/prioritizr/R/Solver-class.R | 259 prioritizr-8.1.0/prioritizr/R/Target-class.R | 64 prioritizr-8.1.0/prioritizr/R/TargetMethod-class.R |only prioritizr-8.1.0/prioritizr/R/Weight-class.R |only prioritizr-8.1.0/prioritizr/R/add_absolute_targets.R | 635 - prioritizr-8.1.0/prioritizr/R/add_asym_connectivity_penalties.R | 775 - prioritizr-8.1.0/prioritizr/R/add_auto_targets.R |only prioritizr-8.1.0/prioritizr/R/add_binary_decisions.R | 192 prioritizr-8.1.0/prioritizr/R/add_boundary_penalties.R | 959 - prioritizr-8.1.0/prioritizr/R/add_cbc_solver.R | 636 - prioritizr-8.1.0/prioritizr/R/add_compile_solver.R | 112 prioritizr-8.1.0/prioritizr/R/add_connectivity_penalties.R | 1199 +- prioritizr-8.1.0/prioritizr/R/add_contiguity_constraints.R | 760 - prioritizr-8.1.0/prioritizr/R/add_cplex_solver.R | 720 - prioritizr-8.1.0/prioritizr/R/add_cuts_portfolio.R | 280 prioritizr-8.1.0/prioritizr/R/add_default_portfolio.R | 80 prioritizr-8.1.0/prioritizr/R/add_default_solver.R | 186 prioritizr-8.1.0/prioritizr/R/add_extra_portfolio.R | 273 prioritizr-8.1.0/prioritizr/R/add_feature_contiguity_constraints.R | 902 - prioritizr-8.1.0/prioritizr/R/add_feature_weights.R | 682 - prioritizr-8.1.0/prioritizr/R/add_gap_portfolio.R | 363 prioritizr-8.1.0/prioritizr/R/add_group_targets.R |only prioritizr-8.1.0/prioritizr/R/add_gurobi_solver.R | 774 - prioritizr-8.1.0/prioritizr/R/add_highs_solver.R | 471 prioritizr-8.1.0/prioritizr/R/add_linear_constraints.R | 888 - 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Title: Structural Equation Modeling with Deep Neural Network and
Machine Learning Algorithms
Description: Training and validation of a custom (or data-driven) Structural
Equation Models using layer-wise Deep Neural Networks or node-wise
Machine Learning algorithms, which extend the fitting procedures of
the 'SEMgraph' R package <doi:10.32614/CRAN.package.SEMgraph>.
Author: Mario Grassi [aut],
Barbara Tarantino [cre]
Maintainer: Barbara Tarantino <barbara.tarantino01@universitadipavia.it>
Diff between SEMdeep versions 1.0.0 dated 2025-01-23 and 1.1.0 dated 2025-11-10
DESCRIPTION | 16 MD5 | 42 - NAMESPACE | 4 NEWS.md | 24 - R/DNNhelp.R |only R/SEMdnn.R | 1005 ++++++++++++++++++++++++++----------------- R/SEMhelp.R | 184 ++++--- R/SEMml.R | 481 ++++++++++++-------- README.md | 12 man/SEMdnn.Rd | 158 ++++-- man/SEMml.Rd | 49 -- man/crossValidation.Rd | 4 man/getConnectionWeight.Rd | 35 - man/getGradientWeight.Rd | 38 - man/getLOCO.Rd |only man/getShapleyR2.Rd | 63 +- man/getSignificanceTest.Rd | 56 +- man/getVariableImportance.Rd | 5 man/mapGraph.Rd | 10 man/nplot.Rd | 28 - man/predict.DNN.Rd | 16 man/predict.ML.Rd | 6 man/predict.SEM.Rd | 15 23 files changed, 1317 insertions(+), 934 deletions(-)
Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Offers a systematic way for conditional reporting of figures and tables for many
(and bivariate combinations of) variables, typically from survey data.
Contains interactive 'ggiraph'-based
(<https://CRAN.R-project.org/package=ggiraph>) plotting functions and
data frame-based summary tables (bivariate significance tests,
frequencies/proportions, unique open ended responses, etc) with
many arguments for customization, and extensions possible. Uses a global
options() system for neatly reducing redundant code.
Also contains tools for immediate saving of objects and returning a hashed link to the object,
useful for creating download links to high resolution images upon rendering in 'Quarto'.
Suitable for highly customized reports, primarily intended for survey
research.
Author: Stephan Daus [aut, cre, cph] ,
Julia Silge [ctb] ,
David Robinson [ctb] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros versions 1.5.4 dated 2025-06-04 and 1.6.0 dated 2025-11-10
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saros-1.6.0/saros/R/make_content.sigtest_table_html.R | 51 saros-1.6.0/saros/R/make_link.R | 78 saros-1.6.0/saros/R/makeme.R | 555 ++--- saros-1.6.0/saros/R/makeme_helpers.R | 1077 ++++++++-- saros-1.6.0/saros/R/makeme_keep_rows.R | 31 saros-1.6.0/saros/R/n_rng.R | 130 - saros-1.6.0/saros/R/post_process_sarosplot_data.R | 80 saros-1.6.0/saros/R/saros.R | 1 saros-1.6.0/saros/R/scale_x_reordered.R | 11 saros-1.6.0/saros/R/simple_desciptives.R | 136 - saros-1.6.0/saros/R/sorting_utils.R |only saros-1.6.0/saros/R/string_wrap.R | 6 saros-1.6.0/saros/R/summarize_cat_cat_data.R | 468 ++-- saros-1.6.0/saros/R/summarize_int_cat_data.R | 32 saros-1.6.0/saros/R/table_utils.R |only saros-1.6.0/saros/R/tabular_read.R |only saros-1.6.0/saros/R/tabular_write.R |only saros-1.6.0/saros/R/txt_from_cat_mesos_plots.R |only saros-1.6.0/saros/R/utils.R | 282 +- saros-1.6.0/saros/R/utils_office.R | 86 saros-1.6.0/saros/R/validate_makeme_options.R | 166 + saros-1.6.0/saros/R/zzz.R | 118 - 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Title: Wrapper for the Gnu Scientific Library
Description: An R wrapper for some of the functionality of the
Gnu Scientific Library.
Author: Robin K. S. Hankin [aut, cre] ,
Andrew Clausen [ctb] ,
Duncan Murdoch [ctb]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between gsl versions 2.1-8 dated 2023-01-24 and 2.1-9 dated 2025-11-10
DESCRIPTION | 11 ++++++----- INSTALL | 16 +++++++++++++++- MD5 | 26 +++++++++++++------------- NEWS.md | 6 ++++++ README.md | 3 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 15 ++++----------- inst/doc/gsl.Rnw | 4 ++-- inst/doc/gsl.pdf |binary man/figures/gsl.png |binary src/qrng.c | 22 +++++++++++----------- src/rng.c | 6 +++--- vignettes/gsl.Rnw | 4 ++-- 14 files changed, 63 insertions(+), 50 deletions(-)
Title: Cancer RADAR Project Tool
Description: Cancer RADAR is a project which aim is to develop an
infrastructure that allows quantifying the risk of cancer by migration
background across Europe. This package contains a set of functions
cancer registries partners should use to reshape 5 year-age group
cancer incidence data into a set of summary statistics (see Boyle &
Parkin (1991, ISBN:978-92-832-1195-2)) in lines with Cancer RADAR data
protections rules.
Author: Nienke Alberts [aut],
Damien Georges [aut, cre] ,
Stefano Rosso [aut],
Iacopo Baussano [aut]
Maintainer: Damien Georges <georgesd@iarc.who.int>
Diff between cancerradarr versions 2.0.0 dated 2025-10-28 and 2.1.0 dated 2025-11-10
DESCRIPTION | 6 +-- MD5 | 28 +++++++-------- R/chop_vector.R | 2 - R/create_static_report.R | 4 +- R/custom_ageg_aggregation.R | 6 +-- R/data.R | 8 ++-- R/proportional_rates.R | 2 - README.md | 4 +- inst/extdata/static_report.Rmd | 72 +++++++++++++++++++++-------------------- man/chop_vector.Rd | 2 - man/chopped.vector.list.Rd | 2 - man/custom_ageg_aggregation.Rd | 2 - man/dat.asr.cat.Rd | 4 +- man/globocan.2022.eu.Rd | 2 - man/proportional_rates.Rd | 2 - 15 files changed, 76 insertions(+), 70 deletions(-)
Title: Client for World Banks's 'Indicators' and 'Poverty and
Inequality Platform (PIP)' APIs
Description: Download and search data from the 'World Bank Indicators
API', which provides access to nearly 16,000 time series indicators.
See
<https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>
for further details about the API.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
This is a re-admission after prior archival of version 0.6.1 dated 2025-08-29
Diff between worldbank versions 0.6.1 dated 2025-08-29 and 0.7.0 dated 2025-11-10
worldbank-0.6.1/worldbank/man/wb_country_indicator.Rd |only worldbank-0.7.0/worldbank/DESCRIPTION | 12 +- worldbank-0.7.0/worldbank/MD5 | 58 +++++---- worldbank-0.7.0/worldbank/NAMESPACE | 3 worldbank-0.7.0/worldbank/NEWS.md | 7 + worldbank-0.7.0/worldbank/R/cache.R |only worldbank-0.7.0/worldbank/R/fone.R | 15 +- worldbank-0.7.0/worldbank/R/indicators.R | 96 ++++++++-------- worldbank-0.7.0/worldbank/R/pip.R | 39 ++++-- worldbank-0.7.0/worldbank/R/utils.R | 7 + worldbank-0.7.0/worldbank/R/worldbank-package.R | 1 worldbank-0.7.0/worldbank/README.md | 29 ++++ worldbank-0.7.0/worldbank/man/cache.Rd |only worldbank-0.7.0/worldbank/man/figures/README-demo-1.png |only worldbank-0.7.0/worldbank/man/fone.Rd | 9 + worldbank-0.7.0/worldbank/man/pip_aux.Rd | 11 + worldbank-0.7.0/worldbank/man/pip_citation.Rd | 2 worldbank-0.7.0/worldbank/man/pip_data.Rd | 5 worldbank-0.7.0/worldbank/man/pip_group.Rd | 5 worldbank-0.7.0/worldbank/man/pip_health_check.Rd | 2 worldbank-0.7.0/worldbank/man/pip_info.Rd | 2 worldbank-0.7.0/worldbank/man/pip_valid_params.Rd | 5 worldbank-0.7.0/worldbank/man/pip_versions.Rd | 5 worldbank-0.7.0/worldbank/man/wb_country.Rd | 5 worldbank-0.7.0/worldbank/man/wb_data.Rd |only worldbank-0.7.0/worldbank/man/wb_income_level.Rd | 2 worldbank-0.7.0/worldbank/man/wb_indicator.Rd | 2 worldbank-0.7.0/worldbank/man/wb_language.Rd | 2 worldbank-0.7.0/worldbank/man/wb_lending_type.Rd | 2 worldbank-0.7.0/worldbank/man/wb_region.Rd | 5 worldbank-0.7.0/worldbank/man/wb_source.Rd | 5 worldbank-0.7.0/worldbank/man/wb_topic.Rd | 5 worldbank-0.7.0/worldbank/tests/testthat/setup.R |only 33 files changed, 226 insertions(+), 115 deletions(-)
Title: A Lightweight and Flexible Web Framework
Description: A very flexible framework for building server side logic in
R. The framework is unopinionated when it comes to how HTTP requests
and WebSocket messages are handled and supports all levels of app
complexity; from serving static content to full-blown dynamic
web-apps. Fiery does not hold your hand as much as e.g. the shiny
package does, but instead sets you free to create your web app the way
you want.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between fiery versions 1.3.0 dated 2025-08-20 and 1.4.0 dated 2025-11-10
DESCRIPTION | 18 MD5 | 45 - NAMESPACE | 5 NEWS.md | 10 R/Fire.R | 610 ++++++++++++----- R/HandlerStack.R | 17 R/PromiseStack.R | 55 + R/aaa.R | 13 R/additional_type_checks.R | 34 R/fake_request.R | 42 - R/fiery-package.R | 4 R/loggers.R | 129 +++ R/otel.R |only R/request_store.R | 2 README.md | 2 build/vignette.rds |binary man/loggers.Rd | 3 tests/testthat/_snaps/Fire.md | 8 tests/testthat/helper.R | 20 tests/testthat/test-Fire.R | 1279 ++++++++++++++++++++----------------- tests/testthat/test-HandlerStack.R | 141 ++-- tests/testthat/test-PromiseStack.R | 174 ++--- tests/testthat/test-fake_request.R | 201 +++-- tests/testthat/test-loggers.R | 121 +-- 24 files changed, 1792 insertions(+), 1141 deletions(-)
Title: Brazilian COVID-19 Pandemic Data
Description: Set of functions to import COVID-19 pandemic data into R. The Brazilian COVID-19 data, obtained from the official Brazilian repository at <https://covid.saude.gov.br/>, is available at the country, region, state, and city levels. The package also downloads world-level COVID-19 data from Johns Hopkins University's repository. COVID-19 data is available from the start of follow-up until to May 5, 2023, when the World Health Organization (WHO) declared an end to the Public Health Emergency of International Concern (PHEIC) for COVID-19.
Author: Fabio Demarqui [aut, cre, cph],
Cristiano Santos [aut],
Matheus Costa [ctb]
Maintainer: Fabio Demarqui <fndemarqui@est.ufmg.br>
This is a re-admission after prior archival of version 1.0.0 dated 2025-08-18
Diff between covid19br versions 1.0.0 dated 2025-08-18 and 1.0.0.1 dated 2025-11-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/downloadData.R | 1 + tests/testthat/test_covid19br.R | 21 +++++++++++++-------- 5 files changed, 26 insertions(+), 16 deletions(-)
Title: Automatic Time Series Analysis and Forecasting using the Ata
Method
Description: The Ata method (Yapar et al. (2019) <doi:10.15672/hujms.461032>), an alternative to exponential smoothing (described in Yapar (2016) <doi:10.15672/HJMS.201614320580>,
Yapar et al. (2017) <doi:10.15672/HJMS.2017.493>), is a new univariate time series forecasting method which provides innovative solutions to issues faced during the
initialization and optimization stages of existing forecasting methods. Forecasting performance of the Ata method is superior to existing methods both in terms of easy
implementation and accurate forecasting. It can be applied to non-seasonal or seasonal time series which can be decomposed into four components (remainder, level, trend
and seasonal). This methodology performed well on the M3 and M4-competition data. This package was written based on Ali Sabri Taylan’s PhD dissertation.
Author: Ali Sabri Taylan [aut, cre, cph] ,
Hanife Taylan Selamlar [aut, cph] ,
Guckan Yapar [aut, ths, cph]
Maintainer: Ali Sabri Taylan <alisabritaylan@gmail.com>
Diff between ATAforecasting versions 0.0.60 dated 2023-06-12 and 0.0.61 dated 2025-11-10
DESCRIPTION | 25 ++++++----- MD5 | 20 +++++---- R/ATA.R | 7 +-- R/ATA_BoxCoxAttributes.r | 2 R/ATA_Decomposition.r | 31 ++++++++++++-- README.md | 91 +++++++++++++++++++++++++++++++++++++++--- build/partial.rdb |binary inst/COPYRIGHT.md |only man/ATA.BoxCoxAttr.Rd | 2 man/ATA.Decomposition.Rd | 11 ++++- man/ATAforecasting-package.Rd | 21 +++++++-- man/figures |only 12 files changed, 170 insertions(+), 40 deletions(-)
More information about ATAforecasting at CRAN
Permanent link
Title: Weighted Random Sampling without Replacement
Description: A collection of implementations of classical and
novel algorithms for weighted sampling without replacement.
Implementations include the algorithm of Efraimidis and Spirakis (2006)
<doi:10.1016/j.ipl.2005.11.003> and Wong and Easton (1980)
<doi:10.1137/0209009>.
Author: Kirill Mueller [aut, cre]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between wrswoR versions 1.1.1 dated 2020-07-26 and 1.2.0 dated 2025-11-10
.aspell |only DESCRIPTION | 32 ++++-- MD5 | 32 +++--- NAMESPACE | 1 NEWS.md | 17 +++ R/RcppExports.R | 6 + R/sample_int_rank.R | 38 ++++++-- R/sample_int_rej.R | 2 README.md | 4 man/sample_int.Rd | 26 ++++- man/wrswoR-package.Rd | 8 + src/RcppExports.cpp | 19 ++++ src/sample_int_crank.cpp | 192 ++++++++++++++++++++++++++++++++--------- tests/testthat.R | 10 +- tests/testthat/test-corner.R | 2 tests/testthat/test-error.R | 47 +++++++++- tests/testthat/test-harmonic.R | 2 tests/testthat/test-unique.R | 2 18 files changed, 341 insertions(+), 99 deletions(-)
Title: Simple Features for R
Description: Support for simple feature access, a standardized way to
encode and analyze spatial vector data. Binds to 'GDAL'
<doi:10.5281/zenodo.5884351> for reading and writing data, to 'GEOS'
<doi:10.5281/zenodo.11396894> for geometrical operations,
and to 'PROJ' <doi:10.5281/zenodo.5884394> for projection
conversions and datum transformations. Uses by default the 's2'
package for geometry operations on geodetic (long/lat degree)
coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-21 dated 2025-05-15 and 1.0-22 dated 2025-11-10
DESCRIPTION | 8 MD5 | 136 +- NAMESPACE | 1 NEWS.md | 18 R/geom-measures.R | 23 R/geom-transformers.R | 55 R/plot.R | 32 R/sf.R | 19 R/sfc.R | 5 R/sfg.R | 6 R/spatstat.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sf1.R | 2 inst/doc/sf1.Rmd | 12 inst/doc/sf1.html | 2600 +++++++++++++++++++++++++++++++------------ inst/doc/sf2.R | 2 inst/doc/sf2.Rmd | 12 inst/doc/sf2.html | 1996 ++++++++++++++++++++++++++------- inst/doc/sf3.R | 2 inst/doc/sf3.Rmd | 12 inst/doc/sf3.html | 2412 +++++++++++++++++++++++++++++---------- inst/doc/sf4.R | 2 inst/doc/sf4.Rmd | 12 inst/doc/sf4.html | 2086 +++++++++++++++++++++++++++------- inst/doc/sf5.Rmd | 12 inst/doc/sf5.html | 1883 +++++++++++++++++++++++++------ inst/doc/sf6.R | 2 inst/doc/sf6.Rmd | 12 inst/doc/sf6.html | 1782 ++++++++++++++++++++++++----- inst/doc/sf7.R | 2 inst/doc/sf7.Rmd | 12 inst/doc/sf7.html | 2056 ++++++++++++++++++++++++++-------- inst/docker/gdal/Dockerfile | 67 - inst/nc/ones.zarr.zip |only inst/nc/zarr.py |only man/geos_unary.Rd | 31 man/st_line_project_point.Rd | 6 src/stars.cpp | 5 tests/aggregate.Rout.save | 10 tests/cast.Rout.save | 8 tests/crs.Rout.save | 8 tests/dist.Rout.save | 8 tests/dplyr.Rout.save | 8 tests/empty.Rout.save | 8 tests/full.Rout.save | 8 tests/gdal_geom.Rout.save | 8 tests/geos.Rout.save | 8 tests/graticule.Rout.save | 8 tests/grid.Rout.save | 8 tests/maps.Rout.save | 8 tests/plot.Rout.save | 8 tests/read.Rout.save | 8 tests/roundtrip.Rout.save | 8 tests/s2.Rout.save | 8 tests/sample.Rout.save | 8 tests/sfc.Rout.save | 10 tests/sfg.Rout.save | 8 tests/spatstat.Rout.save | 38 tests/stars.R | 9 tests/stars.Rout.save | 67 + tests/units.Rout.save | 8 tests/wkb.Rout.save | 8 vignettes/sf1.Rmd | 12 vignettes/sf2.Rmd | 12 vignettes/sf3.Rmd | 12 vignettes/sf4.Rmd | 12 vignettes/sf5.Rmd | 12 vignettes/sf6.Rmd | 12 vignettes/sf7.Rmd | 12 70 files changed, 12190 insertions(+), 3506 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine (version 3.51.0) and for various extensions is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.4.3 dated 2025-08-20 and 2.4.4 dated 2025-11-10
DESCRIPTION | 12 MD5 | 18 NEWS.md | 13 src/SqliteResultImpl.h | 4 src/vendor/extensions/regexp.c | 118 src/vendor/extensions/series.c | 529 ++- src/vendor/extensions/sqlite3ext.h | 7 src/vendor/sqlite3/sqlite3.c | 5519 ++++++++++++++++++++++++++++--------- src/vendor/sqlite3/sqlite3.h | 413 ++ tests/testthat/test-dbConnect.R | 7 10 files changed, 4968 insertions(+), 1672 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.8.1 dated 2025-10-16 and 0.8.2 dated 2025-11-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/gsea.R | 2 ++ 3 files changed, 7 insertions(+), 5 deletions(-)
Title: Arbitrary Dimensional Clifford Algebras
Description: A suite of routines for Clifford algebras, using the
'Map' class of the Standard Template Library. Canonical
reference: Hestenes (1987, ISBN 90-277-1673-0, "Clifford algebra
to geometric calculus"). Special cases including Lorentz transforms,
quaternion multiplication, and Grassmann algebra, are discussed.
Vignettes presenting conformal geometric algebra, quaternions and
split quaternions, dual numbers, and Lorentz transforms are
included. The package follows 'disordR' discipline.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
This is a re-admission after prior archival of version 1.1-2 dated 2025-10-20
Diff between clifford versions 1.1-2 dated 2025-10-20 and 1.1-3 dated 2025-11-10
clifford-1.1-2/clifford/inst/clifford_arxiv.Rnw |only clifford-1.1-2/clifford/inst/doc/cramer_clifford.R |only clifford-1.1-2/clifford/inst/doc/cramer_clifford.Rmd |only clifford-1.1-2/clifford/inst/doc/cramer_clifford.html |only clifford-1.1-2/clifford/inst/doc/determinants_clifford.R |only clifford-1.1-2/clifford/inst/doc/determinants_clifford.Rmd |only clifford-1.1-2/clifford/inst/doc/determinants_clifford.html |only clifford-1.1-2/clifford/inst/doc/getcoeffs.R |only clifford-1.1-2/clifford/inst/doc/getcoeffs.Rmd |only clifford-1.1-2/clifford/inst/doc/getcoeffs.html |only clifford-1.1-2/clifford/inst/doc/lorentz_clifford.R |only clifford-1.1-2/clifford/inst/doc/lorentz_clifford.Rmd |only clifford-1.1-2/clifford/inst/doc/lorentz_clifford.html |only clifford-1.1-2/clifford/inst/doc/pauli_clifford.R |only clifford-1.1-2/clifford/inst/doc/pauli_clifford.Rmd |only clifford-1.1-2/clifford/inst/doc/pauli_clifford.html |only clifford-1.1-2/clifford/inst/doc/pseudoscalar.R |only clifford-1.1-2/clifford/inst/doc/pseudoscalar.Rmd |only clifford-1.1-2/clifford/inst/doc/pseudoscalar.html |only clifford-1.1-2/clifford/inst/doc/quaternion_clifford.R |only clifford-1.1-2/clifford/inst/doc/quaternion_clifford.Rmd |only clifford-1.1-2/clifford/inst/doc/quaternion_clifford.html |only clifford-1.1-2/clifford/inst/dot.Rmd |only clifford-1.1-2/clifford/inst/hankin_aaca_revision.tex |only clifford-1.1-2/clifford/inst/hankin_aaca_revision2.tex |only clifford-1.1-2/clifford/inst/hankin_aaca_revision3.tex |only clifford-1.1-2/clifford/inst/hankin_aca.Rnw |only clifford-1.1-2/clifford/inst/hitzer.Rmd |only clifford-1.1-2/clifford/inst/nectarines.Rmd |only clifford-1.1-2/clifford/inst/read.me |only clifford-1.1-2/clifford/inst/referee_comments.tex |only clifford-1.1-2/clifford/inst/referee_comments2.tex |only clifford-1.1-2/clifford/inst/spheres.R |only clifford-1.1-2/clifford/vignettes/cramer_clifford.Rmd |only clifford-1.1-2/clifford/vignettes/determinants_clifford.Rmd |only clifford-1.1-2/clifford/vignettes/getcoeffs.Rmd |only clifford-1.1-2/clifford/vignettes/lorentz_clifford.Rmd |only clifford-1.1-2/clifford/vignettes/pauli_clifford.Rmd |only clifford-1.1-2/clifford/vignettes/pseudoscalar.Rmd |only clifford-1.1-2/clifford/vignettes/quaternion_clifford.Rmd |only clifford-1.1-3/clifford/DESCRIPTION | 6 clifford-1.1-3/clifford/MD5 | 78 ++-------- clifford-1.1-3/clifford/README.md | 36 +++- clifford-1.1-3/clifford/build/partial.rdb |binary clifford-1.1-3/clifford/build/vignette.rds |binary clifford-1.1-3/clifford/data/dot.rda |binary clifford-1.1-3/clifford/inst/CITATION | 2 clifford-1.1-3/clifford/inst/doc/clifford.pdf |binary clifford-1.1-3/clifford/inst/doc/complex_clifford.Rmd | 2 clifford-1.1-3/clifford/inst/doc/complex_clifford.html | 6 clifford-1.1-3/clifford/inst/doc/conformal_algebra_clifford.html | 10 - clifford-1.1-3/clifford/inst/doc/signature.R | 22 +- clifford-1.1-3/clifford/inst/doc/signature.Rmd | 1 clifford-1.1-3/clifford/inst/doc/signature.html | 17 +- clifford-1.1-3/clifford/man/Ops.clifford.Rd | 2 clifford-1.1-3/clifford/man/antivector.Rd | 8 - clifford-1.1-3/clifford/man/print.Rd | 12 - clifford-1.1-3/clifford/vignettes/clifford.bib | 4 clifford-1.1-3/clifford/vignettes/complex_clifford.Rmd | 2 clifford-1.1-3/clifford/vignettes/signature.Rmd | 1 60 files changed, 100 insertions(+), 109 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-17 0.2.1
2023-01-17 0.2.0
2022-11-01 0.1.1
2022-07-20 0.1.0
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and
to carry out supervised dimensionality reduction. An implementation of
the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370>
is also provided. This is a complete re-implementation in R (and C++,
via the 'Rcpp' package): no Python installation is required. See the
uwot website (<https://github.com/jlmelville/uwot>) for more
documentation and examples.
Author: James Melville [aut, cre, cph],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb],
Dirk Eddelbuettel [ctb],
Wouter van der Bijl [ctb],
Hugo Gruson [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.2.3 dated 2025-02-24 and 0.2.4 dated 2025-11-10
DESCRIPTION | 14 ++++++++------ MD5 | 16 ++++++++-------- NEWS.md | 21 +++++++++++++++++++++ R/init.R | 2 +- R/util.R | 6 +++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/uwot.html | 5 +++-- tests/testthat/test_output.R | 2 +- 9 files changed, 47 insertions(+), 19 deletions(-)
Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on copula graphical
models for accomplishing the three interrelated goals in genetics and genomics in an
unified way: (1) linkage map construction, (2) constructing linkage disequilibrium
networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-
phenotype-environment interactions networks.
The 'netgwas' package can deal with biparental inbreeding and outbreeding species with
any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes),
tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where
number of variables p is considerably larger than number of sample sizes (p >> n).
The computations is memory-optimized using the sparse matrix output. The 'netgwas'
implements the methodological developments in Behrouzi and Wit (2017)
<doi:10.1111/rssc.12287> and Behrouzi and Wit (2017) <doi:10.1093/bioinformatics/bty777>.
Author: Pariya Behrouzi [aut, cre] ,
Ernst C. Wit [ctb]
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Diff between netgwas versions 1.14.3 dated 2024-03-19 and 1.14.4 dated 2025-11-10
DESCRIPTION | 9 +-- MD5 | 12 ++-- R/selectnet.R | 150 ++++++++++++++++++++++++++-------------------------- inst/CITATION | 5 - man/plot.select.Rd | 24 ++++---- man/print.select.Rd | 64 +++++++++++----------- man/selectnet.Rd | 16 ++--- 7 files changed, 139 insertions(+), 141 deletions(-)
Title: Depth Importance in Precision Medicine (DIPM) Method
Description: An implementation by Chen, Li, and Zhang (2022) <doi: 10.1093/bioadv/vbac041> of the Depth Importance in Precision Medicine (DIPM) method
in Chen and Zhang (2022) <doi:10.1093/biostatistics/kxaa021> and Chen and
Zhang (2020) <doi:10.1007/978-3-030-46161-4_16>. The DIPM method is a classification
tree that searches for subgroups with especially poor or strong performance in a given treatment group.
Author: Cai Li [aut, cre],
Victoria Chen [aut],
Heping Zhang [aut]
Maintainer: Cai Li <cai.li.stats@gmail.com>
Diff between dipm versions 1.11 dated 2025-06-15 and 1.12 dated 2025-11-10
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 3 ++- R/node_dipm.R | 13 +++++++------ 4 files changed, 18 insertions(+), 15 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre] ,
Hugh Benjamin Zachariae [aut],
Indrajeet Patil [ctb] ,
Daniel Luedecke [ctb]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.8.1 dated 2025-08-24 and 2.0.0 dated 2025-11-10
DESCRIPTION | 8 MD5 | 202 ++--- NEWS.md | 10 R/baseline.R | 13 R/baseline_binomial.R | 26 R/baseline_gaussian.R | 45 - R/baseline_multinomial.R | 29 R/baseline_wrappers.R | 13 R/call_validate.R | 12 R/choosing_metrics_functions.R | 6 R/combine_predictors.R | 21 R/combine_predictors_prepare_args.R | 16 R/computational_grid.R | 10 R/confusion_matrix.R | 91 +- R/cross_validate.R | 34 R/cross_validate_list.R | 42 - R/data_documentation.R | 22 R/evaluate.R | 195 ++--- R/evaluate_predictions_binomial.R | 25 R/evaluate_predictions_gaussian.R | 45 - R/evaluate_predictions_multinomial.R | 112 +-- R/evaluate_residuals.R | 6 R/extract_model_effects.R | 7 R/extract_probabilities_of.R | 22 R/extract_special_fn_specific_hparams.R | 2 R/fit_model.R | 1 R/fit_predict_model_fn.R | 46 - R/get_nested_model_coefficients.R | 120 +-- R/helpers.R | 168 ++-- R/internal_evaluate_model.R | 1 R/internal_evaluate_predictions.R | 51 - R/metrics.R | 8 R/model_functions.R | 10 R/most_challenging.R | 277 ++++--- R/multiclass_probability_tibble.R | 16 R/nesting_predictions.R | 11 R/plot_confusion_matrix.R | 359 +++++----- R/plot_metric_density.R | 80 +- R/plot_probabilities.R | 131 +-- R/plot_probabilities_ecdf.R | 80 +- R/plot_probability_violins.R | 2 R/plotting_utilities.R | 173 ++-- R/predict_functions.R | 1 R/prepare_evaluation.R | 22 R/prepare_train_test.R | 72 +- R/preprocess_functions.R | 19 R/process_info.R | 110 +-- R/reconstruct_formulas.R | 3 R/run_model_fitting.R | 36 - R/run_prediction_process.R | 35 R/run_quietly.R | 30 R/select_definitions.R | 15 R/select_metrics.R | 10 R/set_info_cols.R | 3 R/set_metrics.R | 25 R/simplify_formula.R | 30 R/softmax.R | 26 R/summarize_metrics.R | 27 R/table_of_content_markdown.R | 4 R/update_hyperparameters.R | 25 R/update_model_specifics.R | 5 R/validate.R | 33 R/validate_fold.R | 4 R/validate_list.R | 45 - build/stage23.rdb |binary inst/doc/Creating_a_confusion_matrix.html | 22 inst/doc/available_metrics.html | 4 inst/doc/cross_validating_custom_functions.html | 10 inst/doc/evaluate_by_id.html | 6 inst/doc/picking_the_number_of_folds_for_cross-validation.html | 8 man/baseline.Rd | 8 man/baseline_binomial.Rd | 2 man/baseline_gaussian.Rd | 2 man/baseline_multinomial.Rd | 4 man/cross_validate.Rd | 11 man/evaluate.Rd | 98 +- man/most_challenging.Rd | 12 man/plot_confusion_matrix.Rd | 42 - man/plot_metric_density.Rd | 12 man/plot_probabilities.Rd | 1 man/plot_probabilities_ecdf.Rd | 1 man/predicted.musicians.Rd | 20 man/preprocess_functions.Rd | 2 man/summarize_metrics.Rd | 8 man/update_hyperparameters.Rd | 3 man/validate.Rd | 9 tests/testthat/test_cross_validate.R | 169 ++++ tests/testthat/test_evaluate.R | 44 - tests/testthat/test_validate.R | 8 vignettes/man/figures/vignette_conf_mat-unnamed-chunk-12-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-13-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-15-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-16-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-16-2.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-17-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-18-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-5-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-6-1.png |binary vignettes/man/figures/vignette_conf_mat-unnamed-chunk-9-1.png |binary vignettes/man/figures/vignette_cv_custom_fn-unnamed-chunk-35-1.png |binary vignettes/man/figures/vignette_pick_k-unnamed-chunk-3-1.png |binary vignettes/man/figures/vignette_pick_k-unnamed-chunk-5-1.png |binary 102 files changed, 1891 insertions(+), 1743 deletions(-)