Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen M Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
[...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.9.2 dated 2025-08-22 and 0.9.3 dated 2025-11-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gimme.R | 12 ++++++------ inst/doc/gimme_vignette.html | 4 ++-- 4 files changed, 15 insertions(+), 15 deletions(-)
Title: Elliptical Factor Models
Description: The elliptical factor model, as an extension of the traditional factor model, effectively overcomes the limitations of the traditional model when dealing with heavy-tailed characteristic data. This package implements sparse principal component methods (SPC) and bi-sparse online principal component estimation (SPOC) for parameter estimation. Includes functionality for calculating mean squared error, relative error, and loading matrix sparsity.The philosophy of the package is described in Guo G. (2023) <doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Yuanyuan Zhou [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between EFM versions 0.5.0 dated 2025-10-21 and 1.3.0 dated 2025-11-13
DESCRIPTION | 8 ++++---- MD5 | 8 +++++++- R/PPC.R |only R/incremental_perturb_PCA.R |only R/robust_perturb_PCA.R |only man/PPC.Rd |only man/incremental_perturb_pca.Rd |only man/robust_perturb_pca.Rd |only 8 files changed, 11 insertions(+), 5 deletions(-)
Title: Analyzing Censored Factor Models
Description: Provides generation and estimation of censored factor models for high-dimensional data with censored errors (normal, t, logistic). Includes Sparse Orthogonal Principal Components (SOPC), and evaluation metrics. Based on Guo G. (2023) <doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Tong Meng [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between CFM versions 0.6.0 dated 2025-10-22 and 0.7.0 dated 2025-11-13
DESCRIPTION | 9 ++++--- MD5 | 12 ++++++++-- NAMESPACE | 36 ++++++++++++++++++++++++------- R/Incremental.CFM.R |only R/Kernel.CFM.R |only R/Robust.CFM.R |only R/Weighted.CFM.R |only man/censored_factor_model.Rd |only man/censored_kernel_factor_model.Rd |only man/incremental_censored_factor_model.Rd |only man/weighted_censored_factor_model.Rd |only 11 files changed, 44 insertions(+), 13 deletions(-)
Title: The Most Comprehensive R Package for Turkish Election Results
Description: Includes the results of general, local, and presidential elections held in Turkey between 1995 and 2023, broken down by provinces and overall national results. It facilitates easy processing of this data and the creation of visual representations based on these election results.
Author: Ozancan Ozdemir [aut, cre]
Maintainer: Ozancan Ozdemir <ozancanozdemir@gmail.com>
Diff between turkeyelections versions 0.1.2 dated 2024-04-30 and 0.1.3 dated 2025-11-13
DESCRIPTION | 10 MD5 | 88 +++--- NEWS.md | 5 R/Data.R | 390 ++++++++++++++++++----------- R/data_list.R | 8 R/global.R | 7 R/show_parliament.R | 123 +++++++-- data/yerel_secim_2024_il.RData |only data/yerel_secim_2024_il.rda |only data/yerel_secim_2024_turkiye.RData |only man/cb_2014_il.Rd | 22 - man/cb_2014_turkiye.Rd | 6 man/cb_2018_il.Rd | 32 +- man/cb_2018_turkiye.Rd | 6 man/cb_2023_ikinci_tur_il.Rd | 18 - man/cb_2023_ikinci_tur_turkiye.Rd | 6 man/cb_2023_ilk_tur_il.Rd | 26 - man/cb_2023_ilk_tur_turkiye.Rd | 6 man/genel_secim_1995_il.Rd | 30 +- man/genel_secim_1995_turkiye.Rd | 10 man/genel_secim_1999_il.Rd | 30 +- man/genel_secim_1999_turkiye.Rd | 10 man/genel_secim_2002_il.Rd | 30 +- man/genel_secim_2002_turkiye.Rd | 10 man/genel_secim_2007_il.Rd | 26 - man/genel_secim_2007_turkiye.Rd | 10 man/genel_secim_2011_il.Rd | 26 - man/genel_secim_2011_turkiye.Rd | 10 man/genel_secim_2018_il.Rd | 26 - man/genel_secim_2018_turkiye.Rd | 10 man/genel_secim_2023_il.Rd | 128 ++++----- man/genel_secim_2023_turkiye.Rd | 10 man/genel_secim_haziran_2015_il.Rd | 26 - man/genel_secim_haziran_2015_turkiye.Rd | 10 man/genel_secim_kasim_2015_il.Rd | 22 - man/genel_secim_kasim_2015_turkiye.Rd | 10 man/show_parliament.Rd | 8 man/yerel_secim_2004_buyuksehir_turkiye.Rd | 12 man/yerel_secim_2009_belediye_turkiye.Rd | 10 man/yerel_secim_2009_buyuksehir_turkiye.Rd | 10 man/yerel_secim_2009_il.Rd | 88 +++--- man/yerel_secim_2014_buyuksehir_turkiye.Rd | 12 man/yerel_secim_2014_il.Rd | 104 +++---- man/yerel_secim_2019_buyuksehir_turkiye.Rd | 12 man/yerel_secim_2019_il.Rd | 62 ++-- man/yerel_secim_2024_il.Rd |only man/yerel_secim_2024_turkiye.Rd |only tests/testthat/test-show_parliament.R |only 48 files changed, 854 insertions(+), 651 deletions(-)
More information about turkeyelections at CRAN
Permanent link
Title: Simple 'WebDAV' Client
Description: A simple 'WebDAV' client that provides functions to fetch and send
files or folders to servers using the 'WebDAV' protocol
(see 'RFC' 4918 <https://www.rfc-editor.org/rfc/rfc4918>).
Only a subset of the protocol is implemented (e.g. file locks are not yet
supported).
Author: Gunther Krauss [aut, cre]
Maintainer: Gunther Krauss <guntherkrauss@uni-bonn.de>
Diff between rdav versions 0.2.0 dated 2025-11-01 and 0.2.2 dated 2025-11-13
rdav-0.2.0/rdav/tests/testthat/test-ncl_base_url.R |only rdav-0.2.2/rdav/DESCRIPTION | 8 rdav-0.2.2/rdav/MD5 | 65 +++-- rdav-0.2.2/rdav/NAMESPACE | 1 rdav-0.2.2/rdav/NEWS | 10 rdav-0.2.2/rdav/R/ncl.R | 22 + rdav-0.2.2/rdav/R/ocs.R | 181 ++++++++++++-- rdav-0.2.2/rdav/R/webdav.R | 16 - rdav-0.2.2/rdav/README.md | 4 rdav-0.2.2/rdav/build/vignette.rds |binary rdav-0.2.2/rdav/inst/doc/rdav.R | 23 + rdav-0.2.2/rdav/inst/doc/rdav.Rmd | 167 +++++++++---- rdav-0.2.2/rdav/inst/doc/rdav.html | 210 +++++++++-------- rdav-0.2.2/rdav/man/ocs_create_share.Rd | 9 rdav-0.2.2/rdav/man/ocs_find_users.Rd |only rdav-0.2.2/rdav/man/ocs_modify_share.Rd | 8 rdav-0.2.2/rdav/man/ocs_share_info.Rd | 3 rdav-0.2.2/rdav/man/ocs_shares_extended.Rd | 8 rdav-0.2.2/rdav/man/rdav.Rd | 4 rdav-0.2.2/rdav/man/wd_connect.Rd | 10 rdav-0.2.2/rdav/tests/testthat/helper-ocs.R |only rdav-0.2.2/rdav/tests/testthat/helper-wd.R |only rdav-0.2.2/rdav/tests/testthat/test-ncl.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_create_share.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_delete_share.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_find_users.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_modify_share.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_request.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_send_mail.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_share_info.R |only rdav-0.2.2/rdav/tests/testthat/test-ocs_shares.R |only rdav-0.2.2/rdav/tests/testthat/test-wd_connect.R | 25 -- rdav-0.2.2/rdav/tests/testthat/test-wd_copy.R | 18 - rdav-0.2.2/rdav/tests/testthat/test-wd_delete.R | 13 - rdav-0.2.2/rdav/tests/testthat/test-wd_dir.R | 89 ------- rdav-0.2.2/rdav/tests/testthat/test-wd_isdir.R | 40 --- rdav-0.2.2/rdav/tests/testthat/test-wd_mkdir.R | 47 --- rdav-0.2.2/rdav/tests/testthat/test-wd_move.R | 18 - rdav-0.2.2/rdav/tests/testthat/test-wd_upload.R | 48 --- rdav-0.2.2/rdav/vignettes/rdav.Rmd | 167 +++++++++---- 40 files changed, 626 insertions(+), 588 deletions(-)
More information about nlmixr2autoinit at CRAN
Permanent link
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goals was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models. For more details see the paper by
Widgren, Bauer, Eriksson and Engblom (2019)
<doi:10.18637/jss.v091.i12>. The package also provides
function [...truncated...]
Author: Stefan Widgren [aut, cre] ,
Robin Eriksson [aut] ,
Stefan Engblom [aut] ,
Pavol Bauer [aut] ,
Thomas Rosendal [ctb] ,
Ivana Rodriguez Ewerloef [ctb] ,
Attractive Chaos [cph]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 9.8.1 dated 2024-06-21 and 10.0.0 dated 2025-11-13
SimInf-10.0.0/SimInf/DESCRIPTION | 40 SimInf-10.0.0/SimInf/MD5 | 228 ++- SimInf-10.0.0/SimInf/NAMESPACE | 31 SimInf-10.0.0/SimInf/NEWS.md | 56 SimInf-10.0.0/SimInf/R/C-generator.R | 39 SimInf-10.0.0/SimInf/R/SimInf-package.R | 10 SimInf-10.0.0/SimInf/R/SimInf_events.R | 9 SimInf-10.0.0/SimInf/R/SimInf_individual_events.R |only SimInf-10.0.0/SimInf/R/SimInf_model.R | 24 SimInf-10.0.0/SimInf/R/abc.R | 314 +++-- SimInf-10.0.0/SimInf/R/check_arguments.R | 22 SimInf-10.0.0/SimInf/R/classes.R | 28 SimInf-10.0.0/SimInf/R/distance.R | 53 SimInf-10.0.0/SimInf/R/distributions.R | 66 + SimInf-10.0.0/SimInf/R/edge_properties.R | 4 SimInf-10.0.0/SimInf/R/init.R | 9 SimInf-10.0.0/SimInf/R/lambert.R |only SimInf-10.0.0/SimInf/R/mparse.R | 64 - SimInf-10.0.0/SimInf/R/n.R | 95 + SimInf-10.0.0/SimInf/R/pfilter.R | 393 ++---- SimInf-10.0.0/SimInf/R/plot.R | 87 + SimInf-10.0.0/SimInf/R/pmcmc.R |only SimInf-10.0.0/SimInf/R/prevalence.R | 37 SimInf-10.0.0/SimInf/R/print.R | 43 SimInf-10.0.0/SimInf/R/punchcard.R | 4 SimInf-10.0.0/SimInf/R/trajectory.R | 55 SimInf-10.0.0/SimInf/R/u0.R | 25 SimInf-10.0.0/SimInf/R/valid.R | 35 SimInf-10.0.0/SimInf/README.md | 41 SimInf-10.0.0/SimInf/build/partial.rdb |binary SimInf-10.0.0/SimInf/build/vignette.rds |binary SimInf-10.0.0/SimInf/cleanup | 4 SimInf-10.0.0/SimInf/inst/doc/SimInf.R | 6 SimInf-10.0.0/SimInf/inst/doc/SimInf.Rnw | 19 SimInf-10.0.0/SimInf/inst/doc/SimInf.pdf |binary SimInf-10.0.0/SimInf/inst/doc/post-process-data.R | 2 SimInf-10.0.0/SimInf/inst/doc/post-process-data.html | 25 SimInf-10.0.0/SimInf/inst/doc/scheduled-events.html | 15 SimInf-10.0.0/SimInf/inst/include/SimInf.h | 10 SimInf-10.0.0/SimInf/man/SimInf.Rd | 1 SimInf-10.0.0/SimInf/man/SimInf_abc-class.Rd | 20 SimInf-10.0.0/SimInf/man/SimInf_individual_events-class.Rd |only SimInf-10.0.0/SimInf/man/SimInf_model-class.Rd | 2 SimInf-10.0.0/SimInf/man/SimInf_pfilter-class.Rd | 4 SimInf-10.0.0/SimInf/man/SimInf_pmcmc-class.Rd |only SimInf-10.0.0/SimInf/man/abc.Rd | 55 SimInf-10.0.0/SimInf/man/add_spatial_coupling_to_ldata.Rd |only SimInf-10.0.0/SimInf/man/as.data.frame.SimInf_individual_events.Rd |only SimInf-10.0.0/SimInf/man/as.data.frame.SimInf_pmcmc.Rd |only SimInf-10.0.0/SimInf/man/continue_abc.Rd |only SimInf-10.0.0/SimInf/man/continue_pmcmc.Rd |only SimInf-10.0.0/SimInf/man/examples/abc.R | 4 SimInf-10.0.0/SimInf/man/examples/pfilter.R | 2 SimInf-10.0.0/SimInf/man/get_individuals.Rd | 10 SimInf-10.0.0/SimInf/man/individual_events.Rd | 4 SimInf-10.0.0/SimInf/man/lambertW0.Rd |only SimInf-10.0.0/SimInf/man/length-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/macros/citations.Rd | 8 SimInf-10.0.0/SimInf/man/mparse.Rd | 20 SimInf-10.0.0/SimInf/man/n_compartments.Rd |only SimInf-10.0.0/SimInf/man/n_nodes.Rd | 6 SimInf-10.0.0/SimInf/man/n_replicates.Rd |only SimInf-10.0.0/SimInf/man/node_events.Rd | 10 SimInf-10.0.0/SimInf/man/pfilter.Rd | 29 SimInf-10.0.0/SimInf/man/plot-SimInf_individual_events-method.Rd |only SimInf-10.0.0/SimInf/man/plot-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/plot.Rd | 6 SimInf-10.0.0/SimInf/man/pmcmc.Rd |only SimInf-10.0.0/SimInf/man/prevalence-SimInf_model-method.Rd | 7 SimInf-10.0.0/SimInf/man/prevalence-SimInf_pfilter-method.Rd | 7 SimInf-10.0.0/SimInf/man/prevalence-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/prevalence.Rd | 7 SimInf-10.0.0/SimInf/man/show-SimInf_individual_events-method.Rd |only SimInf-10.0.0/SimInf/man/show-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/summary-SimInf_individual_events-method.Rd |only SimInf-10.0.0/SimInf/man/summary-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/trajectory-SimInf_model-method.Rd | 20 SimInf-10.0.0/SimInf/man/trajectory-SimInf_pmcmc-method.Rd |only SimInf-10.0.0/SimInf/man/u0.Rd | 23 SimInf-10.0.0/SimInf/src/Makevars.win | 26 SimInf-10.0.0/SimInf/src/SimInf.c | 103 + SimInf-10.0.0/SimInf/src/SimInf_internal.h |only SimInf-10.0.0/SimInf/src/init.c | 138 +- SimInf-10.0.0/SimInf/src/misc/SimInf_LambertW.c |only SimInf-10.0.0/SimInf/src/misc/SimInf_abc.c | 224 +-- SimInf-10.0.0/SimInf/src/misc/SimInf_arg.c | 33 SimInf-10.0.0/SimInf/src/misc/SimInf_distance_matrix.c | 123 -- SimInf-10.0.0/SimInf/src/misc/SimInf_forward_euler_linear_decay.c | 4 SimInf-10.0.0/SimInf/src/misc/SimInf_individual_events.c |only SimInf-10.0.0/SimInf/src/misc/SimInf_ldata.c | 51 SimInf-10.0.0/SimInf/src/misc/SimInf_local_spread.c | 14 SimInf-10.0.0/SimInf/src/misc/SimInf_openmp.c | 35 SimInf-10.0.0/SimInf/src/misc/SimInf_particle_filter.c | 60 - SimInf-10.0.0/SimInf/src/misc/SimInf_trajectory.c | 587 +++++----- SimInf-10.0.0/SimInf/src/misc/binheap.c | 145 +- SimInf-10.0.0/SimInf/src/misc/kvec.h | 5 SimInf-10.0.0/SimInf/src/models/SEIR.c | 12 SimInf-10.0.0/SimInf/src/models/SIR.c | 12 SimInf-10.0.0/SimInf/src/models/SIS.c | 12 SimInf-10.0.0/SimInf/src/models/SISe.c | 35 SimInf-10.0.0/SimInf/src/models/SISe3.c | 41 SimInf-10.0.0/SimInf/src/models/SISe3_sp.c | 43 SimInf-10.0.0/SimInf/src/models/SISe_sp.c | 37 SimInf-10.0.0/SimInf/src/solvers/SimInf_solver.c | 451 ++++--- SimInf-10.0.0/SimInf/src/solvers/SimInf_solver_aem.c |only SimInf-10.0.0/SimInf/src/solvers/SimInf_solver_mssm.c |only SimInf-10.0.0/SimInf/src/solvers/SimInf_solver_ssm.c |only SimInf-10.0.0/SimInf/tests/SEIR.R | 4 SimInf-10.0.0/SimInf/tests/SimInf_model.R | 72 - SimInf-10.0.0/SimInf/tests/abc-gdata.R | 26 SimInf-10.0.0/SimInf/tests/abc-ldata.R | 34 SimInf-10.0.0/SimInf/tests/distributions.R | 13 SimInf-10.0.0/SimInf/tests/individual_events.R |only SimInf-10.0.0/SimInf/tests/lambert.R |only SimInf-10.0.0/SimInf/tests/ldata_sp.R | 14 SimInf-10.0.0/SimInf/tests/mparse.R | 143 ++ SimInf-10.0.0/SimInf/tests/pfilter.R | 81 - SimInf-10.0.0/SimInf/tests/pmcmc.R |only SimInf-10.0.0/SimInf/tests/punchcard.R | 20 SimInf-10.0.0/SimInf/tests/sample_select.R | 23 SimInf-10.0.0/SimInf/tests/trajectory.R |only SimInf-10.0.0/SimInf/vignettes/SimInf.Rnw | 19 SimInf-9.8.1/SimInf/R/SimInf_indiv_events.R |only SimInf-9.8.1/SimInf/man/SimInf_indiv_events-class.Rd |only SimInf-9.8.1/SimInf/man/as.data.frame.SimInf_indiv_events.Rd |only SimInf-9.8.1/SimInf/man/continue.Rd |only SimInf-9.8.1/SimInf/man/plot-SimInf_indiv_events-method.Rd |only SimInf-9.8.1/SimInf/man/show-SimInf_indiv_events-method.Rd |only SimInf-9.8.1/SimInf/man/summary-SimInf_indiv_events-method.Rd |only SimInf-9.8.1/SimInf/src/Makevars.ucrt |only SimInf-9.8.1/SimInf/src/misc/SimInf_arg.h |only SimInf-9.8.1/SimInf/src/misc/SimInf_clean_indiv_events.c |only SimInf-9.8.1/SimInf/src/misc/SimInf_openmp.h |only SimInf-9.8.1/SimInf/src/misc/binheap.h |only SimInf-9.8.1/SimInf/src/solvers/SimInf_solver.h |only SimInf-9.8.1/SimInf/src/solvers/aem |only SimInf-9.8.1/SimInf/src/solvers/ssm |only SimInf-9.8.1/SimInf/tests/indiv_events.R |only SimInf-9.8.1/SimInf/tools |only 139 files changed, 3001 insertions(+), 1777 deletions(-)
Title: Process and Analyse Data from m-Path Sense
Description: Overcomes one of the major challenges in mobile (passive)
sensing, namely being able to pre-process the raw data that comes from
a mobile sensing app, specifically 'm-Path Sense' <https://m-path.io>.
The main task of 'mpathsenser' is therefore to read 'm-Path Sense'
JSON files into a database and provide several convenience functions
to aid in data processing.
Author: Koen Niemeijer [aut, cre] ,
Kristof Meers [ctb] ,
KU Leuven [cph, fnd]
Maintainer: Koen Niemeijer <koen.niemeijer@kuleuven.be>
Diff between mpathsenser versions 1.2.3 dated 2024-03-29 and 1.2.4 dated 2025-11-13
DESCRIPTION | 23 MD5 | 88 NAMESPACE | 4 NEWS.md | 672 +++--- R/alias_column_names.R | 569 +++-- R/coverage.R | 752 ++++--- R/database.R | 1141 ++++++----- R/globals.R | 7 R/import.R | 1272 ++++++------- R/import_functions.R | 1277 ++++++------- R/input_checks.R | 146 - R/legacy_import_functions.R | 4 R/linking.R | 2042 ++++++++++----------- R/location_functions.R | 396 ++-- R/sensor_functions.R | 1995 ++++++++++---------- R/timezone_helpers.R |only R/utils.R | 194 - R/zzz.R | 4 README.md | 99 - build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/mpathsenser.Rmd | 2 inst/doc/mpathsenser.html | 27 inst/extdata/dbdef.sql | 948 ++++----- inst/testdata/new_tests.json | 6 inst/testdata/test.json | 2 man/add_timezones_to_db.Rd |only man/bin_data.Rd | 5 man/decrypt_gps.Rd | 2 man/fix_jsons.Rd | 6 man/import.Rd | 6 man/link_db.Rd | 5 man/mpathsenser-package.Rd | 68 man/test_jsons.Rd | 6 man/unzip_data.Rd | 13 man/with_localtime.Rd |only tests/spelling.R | 3 tests/testthat/test-coverage.R | 5 tests/testthat/test-import.R | 167 + tests/testthat/test-import_functions.R | 2018 ++++++++++---------- tests/testthat/test-legacy-data.R | 852 ++++---- tests/testthat/test-legacy_import_functions.R | 187 - tests/testthat/test-linking.R | 2526 ++++++++++++-------------- tests/testthat/test-sensor_functions.R | 237 +- tests/testthat/test-timezone_helpers.R |only tests/testthat/test-utils.R | 29 vignettes/mpathsenser.Rmd | 2 47 files changed, 9204 insertions(+), 8609 deletions(-)
Title: Tools for Computational Optimal Transport
Description: Transport theory has seen much success in many fields of statistics and machine learning. We provide a variety of algorithms to compute Wasserstein distance, barycenter, and others. See Peyré and Cuturi (2019) <doi:10.1561/2200000073> for the general exposition to the study of computational optimal transport.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between T4transport versions 0.1.3 dated 2025-05-29 and 0.1.5 dated 2025-11-13
DESCRIPTION | 15 +-- MD5 | 81 +++++++++++----- NAMESPACE | 9 + NEWS.md | 9 + R/RcppExports.R | 40 ++++++++ R/auxiliary_compute.R | 31 +++++- R/dist_pwdist.R |only R/dist_wasserstein.R | 153 ++++++++++++++++---------------- R/dist_wasserstein_boostrap.R |only R/fixed_bary_14C.R | 2 R/fixed_bary_15B.R | 2 R/free_bary_23L.R | 13 +- R/free_bary_GradientDescent.R |only R/free_bary_pw.R |only R/free_median_IRLS.R |only R/free_median_PF.R |only R/gauss_barypd.R | 2 R/gauss_medianpd.R | 2 R/other_fiedler.R |only R/package-T4transport.R | 3 R/test_compare_two.R |only README.md | 1 build/partial.rdb |binary build/vignette.rds |only inst/REFERENCES.bib | 82 ++++++++++++++++- inst/doc |only inst/include |only man/fbary14C.Rd | 2 man/fbary15B.Rd | 2 man/fiedler.Rd |only man/gaussbarypd.Rd | 2 man/gaussmedpd.Rd | 2 man/pwbary.Rd |only man/pwdist.Rd |only man/rbary23L.Rd | 13 +- man/rbaryGD.Rd |only man/rmedIRLS.Rd |only man/rmedPF.Rd |only man/wassboot.Rd |only src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 150 +++++++++++++++++++++++++++++++ src/elementary.cpp | 7 + src/elementary.h | 4 src/src_dist_pwdist.cpp |only src/src_free_bary_GradientDescent.cpp |only src/src_free_median_GradientDescent.cpp |only src/utility.cpp | 152 +++++++++---------------------- src/utility.h | 9 + src/utility_EMD.cpp |only src/utility_EMD.h |only vignettes |only 52 files changed, 542 insertions(+), 248 deletions(-)
Title: Personalised Synthetic Controls
Description: Allows the comparison of data cohorts (DC) against a Counter
Factual Model (CFM) and measures the difference in terms of an efficacy
parameter. Allows the application of Personalised Synthetic Controls.
Author: Richard Jackson [cre, aut, cph]
Maintainer: Richard Jackson <richJ23@liverpool.ac.uk>
This is a re-admission after prior archival of version 1.3.0 dated 2025-05-29
Diff between psc versions 1.3.0 dated 2025-05-29 and 2.0.0 dated 2025-11-13
psc-1.3.0/psc/R/data.R |only psc-1.3.0/psc/R/dataComb.R |only psc-1.3.0/psc/R/dataComb.flexsurvreg.R |only psc-1.3.0/psc/R/dataComb.glm.R |only psc-1.3.0/psc/R/dataComb.pscCFM.R |only psc-1.3.0/psc/R/dataSumm.R |only psc-1.3.0/psc/R/data_match.R |only psc-1.3.0/psc/R/facVis.R |only psc-1.3.0/psc/R/initParm.R |only psc-1.3.0/psc/R/initParm.flexsurvreg.R |only psc-1.3.0/psc/R/initParm.glm.R |only psc-1.3.0/psc/R/initParm.pscCFM.R |only psc-1.3.0/psc/R/lik.flexsurvreg.mtc.R |only psc-1.3.0/psc/R/lik.glm.mtc.R |only psc-1.3.0/psc/R/linPred.R |only psc-1.3.0/psc/R/numVis.R |only psc-1.3.0/psc/R/pscEst.flexsurvreg.R |only psc-1.3.0/psc/R/pscEst.glm.R |only psc-1.3.0/psc/R/pscEst.pscCFM.R |only psc-1.3.0/psc/R/pscSumm.R |only psc-1.3.0/psc/R/surv_fpm.R |only psc-1.3.0/psc/data/data.rda |only psc-1.3.0/psc/inst/doc/psc-vignette.R |only psc-1.3.0/psc/inst/doc/psc-vignette.Rmd |only psc-1.3.0/psc/inst/doc/psc-vignette.html |only psc-1.3.0/psc/man/dataComb.Rd |only psc-1.3.0/psc/man/dataComb.flexsurvreg.Rd |only psc-1.3.0/psc/man/dataComb.glm.Rd |only psc-1.3.0/psc/man/dataComb.pscCFM.Rd |only psc-1.3.0/psc/man/dataSumm.Rd |only psc-1.3.0/psc/man/data_match.Rd |only psc-1.3.0/psc/man/facVis.Rd |only psc-1.3.0/psc/man/figures/example_plot.png |only psc-1.3.0/psc/man/initParm.Rd |only psc-1.3.0/psc/man/initParm.flexsurvreg.Rd |only psc-1.3.0/psc/man/initParm.glm.Rd |only psc-1.3.0/psc/man/initParm.pscCFM.Rd |only psc-1.3.0/psc/man/lik.flexsurvreg.mtc.Rd |only psc-1.3.0/psc/man/lik.glm.mtc.Rd |only psc-1.3.0/psc/man/linPred.Rd |only psc-1.3.0/psc/man/numVis.Rd |only psc-1.3.0/psc/man/pscEst.flexsurvreg.Rd |only psc-1.3.0/psc/man/pscEst.glm.Rd |only psc-1.3.0/psc/man/pscEst.pscCFM.Rd |only psc-1.3.0/psc/man/pscSumm.Rd |only psc-1.3.0/psc/man/surv_fpm.Rd |only psc-1.3.0/psc/vignettes/psc-vignette.Rmd |only psc-2.0.0/psc/DESCRIPTION | 23 +- psc-2.0.0/psc/MD5 | 213 ++++++++++++------------ psc-2.0.0/psc/NAMESPACE | 54 ++---- psc-2.0.0/psc/NEWS.md | 2 psc-2.0.0/psc/R/acc.R | 1 psc-2.0.0/psc/R/boot_lp.R |only psc-2.0.0/psc/R/boot_sest.R |only psc-2.0.0/psc/R/cfmDataSumm.R | 31 ++- psc-2.0.0/psc/R/cfmDataVis.R | 32 ++- psc-2.0.0/psc/R/cfmDataVis_fac.R |only psc-2.0.0/psc/R/cfmDataVis_num.R |only psc-2.0.0/psc/R/cfmSumm.flexsurvreg.R |only psc-2.0.0/psc/R/cfmSumm.glm.R |only psc-2.0.0/psc/R/coef.psc.R | 32 +-- psc-2.0.0/psc/R/cont.mod.R | 1 psc-2.0.0/psc/R/e4_data.R | 1 psc-2.0.0/psc/R/facVisComp.R | 19 +- psc-2.0.0/psc/R/gemCFM.R | 4 psc-2.0.0/psc/R/hccData.R |only psc-2.0.0/psc/R/init.R |only psc-2.0.0/psc/R/lik.flexsurvreg.R | 46 +++-- psc-2.0.0/psc/R/lik.glm.R | 37 +++- psc-2.0.0/psc/R/modelExtract.R | 2 psc-2.0.0/psc/R/modelExtract.flexsurvreg.R | 43 +--- psc-2.0.0/psc/R/modelExtract.glm.R | 20 -- psc-2.0.0/psc/R/modelExtract.lmer.R |only psc-2.0.0/psc/R/numVisComp.R | 3 psc-2.0.0/psc/R/plot.R | 20 +- psc-2.0.0/psc/R/plot.psc.binary.R | 47 ++--- psc-2.0.0/psc/R/plot.psc.cont.R | 8 psc-2.0.0/psc/R/plot.psc.count.R | 8 psc-2.0.0/psc/R/plot.psc.flexsurvreg.R | 63 +++++-- psc-2.0.0/psc/R/plotCFM.R |only psc-2.0.0/psc/R/postSummary.R |only psc-2.0.0/psc/R/print.R | 32 --- psc-2.0.0/psc/R/print.quiet_gtsumm.R | 1 psc-2.0.0/psc/R/print.quiet_list.R | 1 psc-2.0.0/psc/R/psc-package.R | 1 psc-2.0.0/psc/R/psc.object.R | 2 psc-2.0.0/psc/R/pscCFM.R | 30 ++- psc-2.0.0/psc/R/pscData.R |only psc-2.0.0/psc/R/pscData_addLik.R |only psc-2.0.0/psc/R/pscData_addtrt.R |only psc-2.0.0/psc/R/pscData_error.R |only psc-2.0.0/psc/R/pscData_match.R |only psc-2.0.0/psc/R/pscData_miss.R |only psc-2.0.0/psc/R/pscData_structure.R |only psc-2.0.0/psc/R/pscEst.R | 33 ++- psc-2.0.0/psc/R/pscEst_run.R |only psc-2.0.0/psc/R/pscEst_samp.R |only psc-2.0.0/psc/R/pscEst_start.R |only psc-2.0.0/psc/R/pscEst_update.R |only psc-2.0.0/psc/R/pscfit.R | 62 +++--- psc-2.0.0/psc/R/spline_surv_est.R |only psc-2.0.0/psc/R/summary.R | 92 +++++++++- psc-2.0.0/psc/R/visComp.R | 5 psc-2.0.0/psc/README.md | 66 +++++-- psc-2.0.0/psc/build/vignette.rds |binary psc-2.0.0/psc/data/e4_data.rda |binary psc-2.0.0/psc/data/gemCFM.rda |binary psc-2.0.0/psc/data/hccData.rda |only psc-2.0.0/psc/inst/doc/psc.R |only psc-2.0.0/psc/inst/doc/psc.Rmd |only psc-2.0.0/psc/inst/doc/psc.html |only psc-2.0.0/psc/man/boot_lp.Rd |only psc-2.0.0/psc/man/boot_sest.Rd |only psc-2.0.0/psc/man/cfmDataSumm.Rd | 7 psc-2.0.0/psc/man/cfmDataVis.Rd | 2 psc-2.0.0/psc/man/cfmDataVis_fac.Rd |only psc-2.0.0/psc/man/cfmDataVis_num.Rd |only psc-2.0.0/psc/man/cfmSumm.flexsurvreg.Rd |only psc-2.0.0/psc/man/cfmSumm.glm.Rd |only psc-2.0.0/psc/man/coef.psc.Rd | 11 - psc-2.0.0/psc/man/data.Rd | 2 psc-2.0.0/psc/man/figures/README-pressure-1.png |binary psc-2.0.0/psc/man/gemCFM.Rd | 4 psc-2.0.0/psc/man/init.Rd |only psc-2.0.0/psc/man/lik.flexsurvreg.Rd | 7 psc-2.0.0/psc/man/lik.glm.Rd | 8 psc-2.0.0/psc/man/modelExtract.flexsurvreg.Rd | 19 -- psc-2.0.0/psc/man/modelExtract.glm.Rd | 15 - psc-2.0.0/psc/man/modelExtract.lmerMod.Rd |only psc-2.0.0/psc/man/numVisComp.Rd | 2 psc-2.0.0/psc/man/plot.psc.Rd | 8 psc-2.0.0/psc/man/plot.psc.binary.Rd | 10 - psc-2.0.0/psc/man/plot.psc.cont.Rd | 6 psc-2.0.0/psc/man/plot.psc.count.Rd | 6 psc-2.0.0/psc/man/plot.psc.flexsurvreg.Rd | 6 psc-2.0.0/psc/man/plotCFM.Rd |only psc-2.0.0/psc/man/postSummary.Rd |only psc-2.0.0/psc/man/psc-package.Rd | 1 psc-2.0.0/psc/man/psc.object.Rd | 2 psc-2.0.0/psc/man/pscCFM.Rd | 6 psc-2.0.0/psc/man/pscData.Rd |only psc-2.0.0/psc/man/pscData_addLik.Rd |only psc-2.0.0/psc/man/pscData_addtrt.Rd |only psc-2.0.0/psc/man/pscData_error.Rd |only psc-2.0.0/psc/man/pscData_match.Rd |only psc-2.0.0/psc/man/pscData_miss.Rd |only psc-2.0.0/psc/man/pscData_structure.Rd |only psc-2.0.0/psc/man/pscEst.Rd | 25 +- psc-2.0.0/psc/man/pscEst_run.Rd |only psc-2.0.0/psc/man/pscEst_samp.Rd |only psc-2.0.0/psc/man/pscEst_start.Rd |only psc-2.0.0/psc/man/pscEst_update.Rd |only psc-2.0.0/psc/man/pscfit.Rd | 24 ++ psc-2.0.0/psc/man/spline_surv_est.Rd |only psc-2.0.0/psc/man/summary.psc.Rd | 5 psc-2.0.0/psc/vignettes/psc.Rmd |only 156 files changed, 661 insertions(+), 550 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators for models and (robust) covariance matrices, and tests for panel data
econometrics, including within/fixed effects, random effects, between, first-difference,
nested random effects as well as instrumental-variable (IV) and Hausman-Taylor-style models,
panel generalized method of moments (GMM) and general FGLS models,
mean groups (MG), demeaned MG, and common correlated effects (CCEMG) and pooled (CCEP) estimators
with common factors, variable coefficients and limited dependent variables models.
Test functions include model specification, serial correlation, cross-sectional dependence,
panel unit root and panel Granger (non-)causality. Typical references are general econometrics
text books such as Baltagi (2021), Econometric Analysis of Panel Data (<doi:10.1007/978-3-030-53953-5>),
Hsiao (2014), Analysis of Panel Data (<doi:10.1017/CBO9781139839327>), and Croissant and Millo (2018),
Panel Data Econometrics with R (<doi:10.1002/9781119504641>).
Author: Yves Croissant [aut],
Giovanni Millo [aut],
Kevin Tappe [aut, cre],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Kevin Tappe <kevin.tappe@bwi.uni-stuttgart.de>
Diff between plm versions 2.6-6 dated 2025-04-04 and 2.6-7 dated 2025-11-13
DESCRIPTION | 8 ++-- MD5 | 65 +++++++++++++++++++------------------ NEWS.md | 14 +++++++ R/deprecated.R | 50 ++++++++++++++-------------- R/est_cce.R | 10 ++--- R/est_ggls.R | 10 ++--- R/est_gmm.R | 8 ++-- R/est_ldv.R | 2 - R/est_mg.R | 10 ++--- R/est_plm.list.R | 15 +++----- R/est_vcm.R | 10 ++--- R/make.pconsecutive_pbalanced.R | 2 - R/plm-package.R | 2 - R/test_cd.R | 8 ++-- R/test_cips.R | 12 +++--- R/test_general.R | 18 ++++------ R/test_serial.R | 4 +- R/tool_ercomp.R | 8 ++-- R/tool_methods.R | 27 +++++++-------- R/tool_misc.R | 8 ++-- R/tool_pdata.frame.R | 14 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 6 +-- inst/doc/A_plmPackage.html | 7 ++- inst/doc/B_plmFunction.R | 2 - inst/doc/B_plmFunction.Rmd | 2 - inst/doc/B_plmFunction.html | 9 ++--- inst/doc/C_plmModelComponents.html | 9 ++--- inst/removed |only man/SumHes.Rd | 2 - vignettes/B_plmFunction.Rmd | 2 - 32 files changed, 177 insertions(+), 167 deletions(-)
Title: Post-Estimation Utilities for 'lavaan' Fitted Models
Description: Companion toolbox for structural equation models fitted with 'lavaan'. Provides post-estimation diagnostics and graphics that operate directly on a fitted object using its estimates and covariance, and refits auxiliary models when needed. The package relies on 'lavaan' (Rosseel, 2012) <doi:10.18637/jss.v048.i02>.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between lavinteract versions 0.2.2 dated 2025-11-04 and 0.3.4 dated 2025-11-13
DESCRIPTION | 10 +++++----- MD5 | 21 ++++++++++++--------- NAMESPACE | 3 +++ NEWS.md | 16 ++++++++++++++-- R/lav_cv.R |only R/lav_slopes.R | 2 +- R/lavinteract-package.R | 3 ++- R/zzz.R | 2 +- build |only inst/WORDLIST | 11 ++++++++++- man/lav_cv.Rd |only man/lav_slopes.Rd | 2 +- man/lavinteract.Rd | 3 ++- 13 files changed, 51 insertions(+), 22 deletions(-)
Title: Visualising Output from Sequential Monte Carlo and
Ensemble-Based Methods
Description: Functions for plotting, and animating, the output of importance samplers, sequential Monte Carlo samplers (SMC) and ensemble-based methods. The package can be used to plot and animate histograms, densities, scatter plots and time series, and to plot the genealogy of an SMC or ensemble-based algorithm. These functions all rely on algorithm output to be supplied in tidy format. A function is provided to transform algorithm output from matrix format (one Monte Carlo point per row) to the tidy format required by the plotting and animating functions.
Author: Richard G Everitt [aut, cre]
Maintainer: Richard G Everitt <richard.g.everitt@gmail.com>
This is a re-admission after prior archival of version 0.1.2.0 dated 2024-07-27
Diff between ggsmc versions 0.1.2.0 dated 2024-07-27 and 0.2.0 dated 2025-11-13
DESCRIPTION | 15 ++++++++------- MD5 | 37 +++++++++++++++++++------------------ NEWS.md |only R/densities.R | 15 +++++++++++++-- R/genealogy.R | 4 ++-- R/histograms.R | 17 ++++++++++++++--- R/line_graph.R | 20 ++++++++++++++++---- R/scatter_plots.R | 17 ++++++++++++++--- README.md | 5 +++-- build/vignette.rds |binary inst/doc/Visualising.html | 18 +++++++++--------- man/animate_density.Rd | 3 +++ man/animate_histogram.Rd | 5 ++++- man/animate_reveal_time_series.Rd | 5 ++++- man/animate_scatter.Rd | 5 ++++- man/animate_time_series.Rd | 2 +- man/plot_density.Rd | 3 +++ man/plot_histogram.Rd | 3 +++ man/plot_scatter.Rd | 3 +++ man/plot_time_series.Rd | 3 +++ 20 files changed, 126 insertions(+), 54 deletions(-)
Title: Power Calculation for Two-Way Factorial Designs
Description: The basic use of this package is with 3 sequential functions. One to generate expected cell means and standard deviations, along with correlation and covariance matrices in the case of repeated measurements. This is followed by experiment simulation i number of times. Finally, power is calculated from the simulated data. Features that may be considered in the model are interaction, measure correlation and non-normal distributions.
Author: Louis Macias [aut, cre, cph] ,
Silke Szymczak [aut]
Maintainer: Louis Macias <louis.macias@uni-luebeck.de>
This is a re-admission after prior archival of version 1.6.0 dated 2025-10-24
Diff between extraSuperpower versions 1.6.0 dated 2025-10-24 and 1.6.1 dated 2025-11-13
DESCRIPTION | 6 - MD5 | 8 +- NEWS.md | 76 ++++++++++++------------ inst/doc/eSp_balanced_design_powertest.html | 8 +- tests/testthat/test-twoway_simulation_testing.R | 4 - 5 files changed, 52 insertions(+), 50 deletions(-)
More information about extraSuperpower at CRAN
Permanent link
Title: Statistical Metrics and Reporting Tool
Description: A 'Shiny'-based toolkit for item/test analysis. It is designed for multiple-choice, true-false, and open-ended questions. The toolkit is usable with datasets in 1-0 or other formats. Key analyses include difficulty, discrimination, response-option analysis, reports. The classical test theory methods used are described in Ebel & Frisbie (1991, ISBN:978-0132892314).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between examly versions 0.1.1 dated 2025-11-11 and 0.1.2 dated 2025-11-13
DESCRIPTION | 10 MD5 | 36 ++- NAMESPACE | 32 +++ NEWS.md |only R/run_app.R | 8 R/utils-imports.R | 2 R/utils.R | 244 +++++++++++++++++++++++ inst/shinyapp/app.R | 382 ++++++++++++++++++++++++++++++------- inst/shinyapp/i18n/en.json | 27 ++ inst/shinyapp/i18n/tr.json | 27 ++ man/color_badge.Rd |only man/comment_overall_keys.Rd |only man/d_mode.Rd |only man/detect_id_cols.Rd |only man/difficulty_label_key.Rd |only man/discrimination_decision_key.Rd |only man/get_itemexam_quant.Rd |only man/grapes-or-or-grapes.Rd |only man/is_scored_01.Rd |only man/kr20.Rd |only man/norm_cols.Rd |only man/norm_letter.Rd |only man/parse_lc_bin.Rd |only man/parse_lc_raw.Rd |only man/parse_mc_bin.Rd |only man/parse_tf_bin.Rd |only man/pbiserial_rest.Rd |only man/q_index.Rd |only man/student_counts.Rd |only 29 files changed, 678 insertions(+), 90 deletions(-)
Title: Your Friendly Solution to Managing Browser Cookies
Description: A convenient tool to store and format browser cookies and use them
in 'HTTP' requests (for example, through 'httr2', 'httr' or 'curl').
Author: Johannes B. Gruber [aut, cre]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between cookiemonster versions 0.0.4 dated 2025-11-12 and 0.0.5 dated 2025-11-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- README.md | 1 + inst/doc/cookies.html | 4 ++-- tests/testthat/test-browser.R | 3 +-- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing
framework for R that is easy to learn and use, and integrates with
your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb] )
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between testthat versions 3.2.3 dated 2025-01-13 and 3.3.0 dated 2025-11-13
testthat-3.2.3/testthat/R/example.R |only testthat-3.2.3/testthat/R/expect-length.R |only testthat-3.2.3/testthat/R/expectations-matches.R |only testthat-3.2.3/testthat/man/auto_test_package.Rd |only testthat-3.2.3/testthat/src/reassign.c |only testthat-3.2.3/testthat/tests/testthat/_snaps/R4.0 |only testthat-3.2.3/testthat/tests/testthat/test-browser.R |only testthat-3.2.3/testthat/tests/testthat/test-catch.R |only testthat-3.2.3/testthat/tests/testthat/test-colour.R |only testthat-3.2.3/testthat/tests/testthat/test-expect-known-hash.R |only testthat-3.2.3/testthat/tests/testthat/test-expect-length.R |only testthat-3.2.3/testthat/tests/testthat/test-expect_that.R |only testthat-3.2.3/testthat/tests/testthat/test-label.R |only testthat-3.2.3/testthat/tests/testthat/test-source_dir.R |only testthat-3.3.0/testthat/DESCRIPTION | 28 testthat-3.3.0/testthat/MD5 | 644 +++++----- testthat-3.3.0/testthat/NAMESPACE | 25 testthat-3.3.0/testthat/NEWS.md | 69 + testthat-3.3.0/testthat/R/auto-test.R | 54 testthat-3.3.0/testthat/R/colour-text.R | 9 testthat-3.3.0/testthat/R/compare.R | 88 - testthat-3.3.0/testthat/R/deprec-condition.R | 38 testthat-3.3.0/testthat/R/describe.R | 36 testthat-3.3.0/testthat/R/edition.R | 13 testthat-3.3.0/testthat/R/evaluate-promise.R | 4 testthat-3.3.0/testthat/R/examples.R |only testthat-3.3.0/testthat/R/expect-all.R |only testthat-3.3.0/testthat/R/expect-comparison.R | 168 ++ testthat-3.3.0/testthat/R/expect-condition.R | 318 +++- testthat-3.3.0/testthat/R/expect-constant.R | 86 - testthat-3.3.0/testthat/R/expect-equality.R | 194 +-- testthat-3.3.0/testthat/R/expect-inheritance.R | 249 ++- testthat-3.3.0/testthat/R/expect-invisible.R | 26 testthat-3.3.0/testthat/R/expect-known.R | 181 +- testthat-3.3.0/testthat/R/expect-match.R |only testthat-3.3.0/testthat/R/expect-named.R | 66 - testthat-3.3.0/testthat/R/expect-no-condition.R | 105 - testthat-3.3.0/testthat/R/expect-output.R | 48 testthat-3.3.0/testthat/R/expect-reference.R |only testthat-3.3.0/testthat/R/expect-self-test.R | 171 +- testthat-3.3.0/testthat/R/expect-setequal.R | 221 ++- testthat-3.3.0/testthat/R/expect-shape.R |only testthat-3.3.0/testthat/R/expect-silent.R | 15 testthat-3.3.0/testthat/R/expect-that.R | 142 +- testthat-3.3.0/testthat/R/expect-vector.R | 24 testthat-3.3.0/testthat/R/expectation.R | 187 +- testthat-3.3.0/testthat/R/extract.R |only testthat-3.3.0/testthat/R/import-standalone-purrr.R |only testthat-3.3.0/testthat/R/local.R | 46 testthat-3.3.0/testthat/R/mock-oo.R |only testthat-3.3.0/testthat/R/mock.R | 121 - testthat-3.3.0/testthat/R/mock2-helpers.R |only testthat-3.3.0/testthat/R/mock2.R | 29 testthat-3.3.0/testthat/R/old-school.R | 131 +- testthat-3.3.0/testthat/R/parallel-config.R | 18 testthat-3.3.0/testthat/R/parallel-taskq.R | 185 ++ testthat-3.3.0/testthat/R/parallel.R | 220 ++- testthat-3.3.0/testthat/R/praise.R | 6 testthat-3.3.0/testthat/R/quasi-label.R | 63 testthat-3.3.0/testthat/R/reporter-check.R | 73 + testthat-3.3.0/testthat/R/reporter-debug.R | 14 testthat-3.3.0/testthat/R/reporter-fail.R | 7 testthat-3.3.0/testthat/R/reporter-junit.R | 74 - testthat-3.3.0/testthat/R/reporter-list.R | 134 +- testthat-3.3.0/testthat/R/reporter-location.R | 3 testthat-3.3.0/testthat/R/reporter-minimal.R | 5 testthat-3.3.0/testthat/R/reporter-multi.R | 22 testthat-3.3.0/testthat/R/reporter-progress.R | 162 +- testthat-3.3.0/testthat/R/reporter-rstudio.R | 5 testthat-3.3.0/testthat/R/reporter-silent.R | 16 testthat-3.3.0/testthat/R/reporter-slow.R |only testthat-3.3.0/testthat/R/reporter-stop.R | 67 - testthat-3.3.0/testthat/R/reporter-summary.R | 46 testthat-3.3.0/testthat/R/reporter-tap.R | 11 testthat-3.3.0/testthat/R/reporter-teamcity.R | 11 testthat-3.3.0/testthat/R/reporter-timing.R |only testthat-3.3.0/testthat/R/reporter-zzz.R | 33 testthat-3.3.0/testthat/R/reporter.R | 25 testthat-3.3.0/testthat/R/skip.R | 92 + testthat-3.3.0/testthat/R/snapshot-cleanup.R | 36 testthat-3.3.0/testthat/R/snapshot-file-snaps.R | 178 +- testthat-3.3.0/testthat/R/snapshot-file.R | 209 ++- testthat-3.3.0/testthat/R/snapshot-github.R |only testthat-3.3.0/testthat/R/snapshot-manage.R | 96 + testthat-3.3.0/testthat/R/snapshot-reporter-parallel.R | 7 testthat-3.3.0/testthat/R/snapshot-reporter.R | 138 +- testthat-3.3.0/testthat/R/snapshot-serialize.R | 12 testthat-3.3.0/testthat/R/snapshot-value.R | 119 - testthat-3.3.0/testthat/R/snapshot.R | 265 +++- testthat-3.3.0/testthat/R/source.R | 135 +- testthat-3.3.0/testthat/R/srcrefs.R | 14 testthat-3.3.0/testthat/R/stack.R | 6 testthat-3.3.0/testthat/R/teardown.R | 13 testthat-3.3.0/testthat/R/test-compiled-code.R | 144 +- testthat-3.3.0/testthat/R/test-example.R | 15 testthat-3.3.0/testthat/R/test-files.R | 236 ++- testthat-3.3.0/testthat/R/test-package.R | 15 testthat-3.3.0/testthat/R/test-state.R | 21 testthat-3.3.0/testthat/R/test-that.R | 176 +- testthat-3.3.0/testthat/R/testthat-package.R | 6 testthat-3.3.0/testthat/R/try-again.R | 72 - testthat-3.3.0/testthat/R/utils.R | 80 - testthat-3.3.0/testthat/R/verify-output.R | 29 testthat-3.3.0/testthat/R/watcher.R | 29 testthat-3.3.0/testthat/build/vignette.rds |binary testthat-3.3.0/testthat/inst/CITATION | 2 testthat-3.3.0/testthat/inst/doc/challenging-tests.R |only testthat-3.3.0/testthat/inst/doc/challenging-tests.Rmd |only testthat-3.3.0/testthat/inst/doc/challenging-tests.html |only testthat-3.3.0/testthat/inst/doc/custom-expectation.R | 207 ++- testthat-3.3.0/testthat/inst/doc/custom-expectation.Rmd | 304 ++++ testthat-3.3.0/testthat/inst/doc/custom-expectation.html | 449 +++++- testthat-3.3.0/testthat/inst/doc/mocking.R |only testthat-3.3.0/testthat/inst/doc/mocking.Rmd |only testthat-3.3.0/testthat/inst/doc/mocking.html |only testthat-3.3.0/testthat/inst/doc/parallel.Rmd | 8 testthat-3.3.0/testthat/inst/doc/parallel.html | 42 testthat-3.3.0/testthat/inst/doc/skipping.R | 18 testthat-3.3.0/testthat/inst/doc/skipping.Rmd | 63 testthat-3.3.0/testthat/inst/doc/skipping.html | 151 +- testthat-3.3.0/testthat/inst/doc/snapshotting.R | 98 + testthat-3.3.0/testthat/inst/doc/snapshotting.Rmd | 219 ++- testthat-3.3.0/testthat/inst/doc/snapshotting.html | 478 ++++--- testthat-3.3.0/testthat/inst/doc/special-files.html | 5 testthat-3.3.0/testthat/inst/doc/test-fixtures.R | 44 testthat-3.3.0/testthat/inst/doc/test-fixtures.Rmd | 127 + testthat-3.3.0/testthat/inst/doc/test-fixtures.html | 484 ++++--- testthat-3.3.0/testthat/inst/doc/third-edition.R | 10 testthat-3.3.0/testthat/inst/doc/third-edition.Rmd | 13 testthat-3.3.0/testthat/inst/doc/third-edition.html | 54 testthat-3.3.0/testthat/inst/include/testthat/vendor/catch.h | 13 testthat-3.3.0/testthat/man/CheckReporter.Rd | 3 testthat-3.3.0/testthat/man/DebugReporter.Rd | 3 testthat-3.3.0/testthat/man/FailReporter.Rd | 3 testthat-3.3.0/testthat/man/JunitReporter.Rd | 15 testthat-3.3.0/testthat/man/ListReporter.Rd | 4 testthat-3.3.0/testthat/man/LocationReporter.Rd | 1 testthat-3.3.0/testthat/man/MinimalReporter.Rd | 3 testthat-3.3.0/testthat/man/MultiReporter.Rd | 3 testthat-3.3.0/testthat/man/ProgressReporter.Rd | 3 testthat-3.3.0/testthat/man/RStudioReporter.Rd | 3 testthat-3.3.0/testthat/man/Reporter.Rd | 3 testthat-3.3.0/testthat/man/SilentReporter.Rd | 6 testthat-3.3.0/testthat/man/SlowReporter.Rd |only testthat-3.3.0/testthat/man/StopReporter.Rd | 12 testthat-3.3.0/testthat/man/SummaryReporter.Rd | 13 testthat-3.3.0/testthat/man/TapReporter.Rd | 3 testthat-3.3.0/testthat/man/TeamcityReporter.Rd | 3 testthat-3.3.0/testthat/man/auto_test.Rd | 23 testthat-3.3.0/testthat/man/comparison-expectations.Rd | 5 testthat-3.3.0/testthat/man/describe.Rd | 1 testthat-3.3.0/testthat/man/equality-expectations.Rd | 2 testthat-3.3.0/testthat/man/expect.Rd | 39 testthat-3.3.0/testthat/man/expect_all_equal.Rd |only testthat-3.3.0/testthat/man/expect_error.Rd | 2 testthat-3.3.0/testthat/man/expect_invisible.Rd | 2 testthat-3.3.0/testthat/man/expect_is.Rd | 10 testthat-3.3.0/testthat/man/expect_known_output.Rd | 2 testthat-3.3.0/testthat/man/expect_length.Rd | 30 testthat-3.3.0/testthat/man/expect_match.Rd | 24 testthat-3.3.0/testthat/man/expect_named.Rd | 2 testthat-3.3.0/testthat/man/expect_no_error.Rd | 2 testthat-3.3.0/testthat/man/expect_no_success.Rd |only testthat-3.3.0/testthat/man/expect_null.Rd | 2 testthat-3.3.0/testthat/man/expect_output.Rd | 2 testthat-3.3.0/testthat/man/expect_output_file.Rd | 2 testthat-3.3.0/testthat/man/expect_reference.Rd | 4 testthat-3.3.0/testthat/man/expect_setequal.Rd | 14 testthat-3.3.0/testthat/man/expect_silent.Rd | 2 testthat-3.3.0/testthat/man/expect_snapshot.Rd | 9 testthat-3.3.0/testthat/man/expect_snapshot_file.Rd | 50 testthat-3.3.0/testthat/man/expect_snapshot_output.Rd | 7 testthat-3.3.0/testthat/man/expect_snapshot_value.Rd | 9 testthat-3.3.0/testthat/man/expect_success.Rd | 20 testthat-3.3.0/testthat/man/expect_that.Rd | 2 testthat-3.3.0/testthat/man/expect_vector.Rd | 4 testthat-3.3.0/testthat/man/expectation.Rd | 25 testthat-3.3.0/testthat/man/extract_test.Rd |only testthat-3.3.0/testthat/man/fail.Rd | 53 testthat-3.3.0/testthat/man/figures/lifecycle-deprecated.svg | 22 testthat-3.3.0/testthat/man/figures/lifecycle-experimental.svg | 22 testthat-3.3.0/testthat/man/figures/lifecycle-stable.svg | 30 testthat-3.3.0/testthat/man/figures/lifecycle-superseded.svg | 22 testthat-3.3.0/testthat/man/inheritance-expectations.Rd | 43 testthat-3.3.0/testthat/man/local_mocked_bindings.Rd | 24 testthat-3.3.0/testthat/man/local_mocked_r6_class.Rd |only testthat-3.3.0/testthat/man/local_mocked_s3_method.Rd |only testthat-3.3.0/testthat/man/local_snapshotter.Rd | 8 testthat-3.3.0/testthat/man/local_test_context.Rd | 2 testthat-3.3.0/testthat/man/logical-expectations.Rd | 26 testthat-3.3.0/testthat/man/mock_output_sequence.Rd |only testthat-3.3.0/testthat/man/not.Rd | 2 testthat-3.3.0/testthat/man/oldskool.Rd | 12 testthat-3.3.0/testthat/man/quasi_label.Rd | 2 testthat-3.3.0/testthat/man/set_state_inspector.Rd | 17 testthat-3.3.0/testthat/man/skip.Rd | 21 testthat-3.3.0/testthat/man/snapshot_accept.Rd | 10 testthat-3.3.0/testthat/man/snapshot_download_gh.Rd |only testthat-3.3.0/testthat/man/source_file.Rd | 11 testthat-3.3.0/testthat/man/succeed.Rd |only testthat-3.3.0/testthat/man/test_dir.Rd | 9 testthat-3.3.0/testthat/man/test_file.Rd | 4 testthat-3.3.0/testthat/man/test_package.Rd | 11 testthat-3.3.0/testthat/man/testthat_examples.Rd | 2 testthat-3.3.0/testthat/man/topic-name.Rd |only testthat-3.3.0/testthat/man/try_again.Rd | 33 testthat-3.3.0/testthat/man/use_catch.Rd | 27 testthat-3.3.0/testthat/man/watch.Rd | 6 testthat-3.3.0/testthat/man/with_mock.Rd | 14 testthat-3.3.0/testthat/src/init.c | 4 testthat-3.3.0/testthat/tests/test-catch.R | 47 testthat-3.3.0/testthat/tests/testthat/_snaps/R4.5 |only testthat-3.3.0/testthat/tests/testthat/_snaps/R4.6 |only testthat-3.3.0/testthat/tests/testthat/_snaps/describe.md | 26 testthat-3.3.0/testthat/tests/testthat/_snaps/edition.md | 13 testthat-3.3.0/testthat/tests/testthat/_snaps/examples.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-all.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-comparison.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-condition.md | 149 ++ testthat-3.3.0/testthat/tests/testthat/_snaps/expect-constant.md | 50 testthat-3.3.0/testthat/tests/testthat/_snaps/expect-equality.md | 131 +- testthat-3.3.0/testthat/tests/testthat/_snaps/expect-inheritance.md | 170 ++ testthat-3.3.0/testthat/tests/testthat/_snaps/expect-invisible.md | 32 testthat-3.3.0/testthat/tests/testthat/_snaps/expect-match.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-named.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-no-condition.md | 88 - testthat-3.3.0/testthat/tests/testthat/_snaps/expect-output.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-reference.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-self-test.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-setequal.md | 273 +++- testthat-3.3.0/testthat/tests/testthat/_snaps/expect-shape.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-silent.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expect-vector.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/expectation.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/extract.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/mock-oo.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/mock.md | 13 testthat-3.3.0/testthat/tests/testthat/_snaps/mock2-helpers.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/parallel.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/quasi-label.md | 21 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-check.md | 72 - testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-debug.md | 10 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-junit.md | 27 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-list.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-location.md | 12 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-progress.md | 327 ++--- testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-rstudio.md | 12 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-slow.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-stop.md | 86 - testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-summary.md | 56 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-tap.md | 10 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-teamcity.md | 4 testthat-3.3.0/testthat/tests/testthat/_snaps/reporter-zzz.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/skip.md | 34 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-cleanup.md | 4 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-file.md | 58 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-file/foo-not-binary.csv |only testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-file/foo.csv | 39 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-manage.md | 45 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-reporter.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot-value.md | 22 testthat-3.3.0/testthat/tests/testthat/_snaps/snapshot.md | 79 + testthat-3.3.0/testthat/tests/testthat/_snaps/source.md | 35 testthat-3.3.0/testthat/tests/testthat/_snaps/test-compiled-code.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/test-files.md | 40 testthat-3.3.0/testthat/tests/testthat/_snaps/try-again.md |only testthat-3.3.0/testthat/tests/testthat/_snaps/verify-output.md |only testthat-3.3.0/testthat/tests/testthat/extract |only testthat-3.3.0/testthat/tests/testthat/reporters/backtraces.R | 10 testthat-3.3.0/testthat/tests/testthat/reporters/fail.R | 2 testthat-3.3.0/testthat/tests/testthat/reporters/nested.R |only testthat-3.3.0/testthat/tests/testthat/reporters/tests.R | 8 testthat-3.3.0/testthat/tests/testthat/test-colour-text.R |only testthat-3.3.0/testthat/tests/testthat/test-compare.R | 27 testthat-3.3.0/testthat/tests/testthat/test-context.R | 8 testthat-3.3.0/testthat/tests/testthat/test-describe.R | 82 + testthat-3.3.0/testthat/tests/testthat/test-edition.R | 14 testthat-3.3.0/testthat/tests/testthat/test-examples.R | 4 testthat-3.3.0/testthat/tests/testthat/test-expect-all.R |only testthat-3.3.0/testthat/tests/testthat/test-expect-comparison.R | 78 + testthat-3.3.0/testthat/tests/testthat/test-expect-condition.R | 99 + testthat-3.3.0/testthat/tests/testthat/test-expect-constant.R | 30 testthat-3.3.0/testthat/tests/testthat/test-expect-equality.R | 73 - testthat-3.3.0/testthat/tests/testthat/test-expect-inheritance.R | 92 + testthat-3.3.0/testthat/tests/testthat/test-expect-invisible.R | 6 testthat-3.3.0/testthat/tests/testthat/test-expect-known.R | 42 testthat-3.3.0/testthat/tests/testthat/test-expect-match.R | 102 + testthat-3.3.0/testthat/tests/testthat/test-expect-named.R | 51 testthat-3.3.0/testthat/tests/testthat/test-expect-no-condition.R | 28 testthat-3.3.0/testthat/tests/testthat/test-expect-output.R | 28 testthat-3.3.0/testthat/tests/testthat/test-expect-reference.R | 2 testthat-3.3.0/testthat/tests/testthat/test-expect-self-test.R | 137 +- testthat-3.3.0/testthat/tests/testthat/test-expect-setequal.R | 113 + testthat-3.3.0/testthat/tests/testthat/test-expect-shape.R |only testthat-3.3.0/testthat/tests/testthat/test-expect-silent.R | 9 testthat-3.3.0/testthat/tests/testthat/test-expect-vector.R | 13 testthat-3.3.0/testthat/tests/testthat/test-expectation.R | 31 testthat-3.3.0/testthat/tests/testthat/test-extract.R |only testthat-3.3.0/testthat/tests/testthat/test-local.R | 8 testthat-3.3.0/testthat/tests/testthat/test-make-expectation.R | 1 testthat-3.3.0/testthat/tests/testthat/test-mock-oo.R |only testthat-3.3.0/testthat/tests/testthat/test-mock.R | 8 testthat-3.3.0/testthat/tests/testthat/test-mock2-helpers.R |only testthat-3.3.0/testthat/tests/testthat/test-old-school.R | 31 testthat-3.3.0/testthat/tests/testthat/test-parallel-crash.R | 19 testthat-3.3.0/testthat/tests/testthat/test-parallel-errors.R |only testthat-3.3.0/testthat/tests/testthat/test-parallel-outside.R | 2 testthat-3.3.0/testthat/tests/testthat/test-parallel-setup.R | 3 testthat-3.3.0/testthat/tests/testthat/test-parallel-startup.R | 3 testthat-3.3.0/testthat/tests/testthat/test-parallel-stdout.R |only testthat-3.3.0/testthat/tests/testthat/test-parallel-teardown.R | 15 testthat-3.3.0/testthat/tests/testthat/test-parallel.R | 118 + testthat-3.3.0/testthat/tests/testthat/test-parallel/fail/tests/testthat/test-bad.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/outside/tests/testthat/test-outside-2.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/setup/tests/testthat/setup-bad.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/snap/tests/testthat/test-snap-1.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/snap/tests/testthat/test-snap-2.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/snap/tests/testthat/test-snap-3.R | 1 testthat-3.3.0/testthat/tests/testthat/test-parallel/startup/R/fail.R | 3 testthat-3.3.0/testthat/tests/testthat/test-parallel/stdout |only testthat-3.3.0/testthat/tests/testthat/test-parallel/syntax-error |only testthat-3.3.0/testthat/tests/testthat/test-parallel/teardown/tests/testthat/teardown-bad.R | 1 testthat-3.3.0/testthat/tests/testthat/test-quasi-label.R | 50 testthat-3.3.0/testthat/tests/testthat/test-reporter-check.R | 30 testthat-3.3.0/testthat/tests/testthat/test-reporter-debug.R | 10 testthat-3.3.0/testthat/tests/testthat/test-reporter-junit.R | 35 testthat-3.3.0/testthat/tests/testthat/test-reporter-list.R | 51 testthat-3.3.0/testthat/tests/testthat/test-reporter-progress.R | 11 testthat-3.3.0/testthat/tests/testthat/test-reporter-slow.R |only testthat-3.3.0/testthat/tests/testthat/test-reporter-stop.R | 30 testthat-3.3.0/testthat/tests/testthat/test-reporter-summary.R | 15 testthat-3.3.0/testthat/tests/testthat/test-reporter-zzz.R | 9 testthat-3.3.0/testthat/tests/testthat/test-skip.R | 95 + testthat-3.3.0/testthat/tests/testthat/test-snapshot-file.R | 133 +- testthat-3.3.0/testthat/tests/testthat/test-snapshot-manage.R | 73 + testthat-3.3.0/testthat/tests/testthat/test-snapshot-reporter.R | 72 - testthat-3.3.0/testthat/tests/testthat/test-snapshot-serialize.R | 23 testthat-3.3.0/testthat/tests/testthat/test-snapshot-value.R | 18 testthat-3.3.0/testthat/tests/testthat/test-snapshot.R | 83 + testthat-3.3.0/testthat/tests/testthat/test-source.R | 183 ++ testthat-3.3.0/testthat/tests/testthat/test-srcrefs.R | 1 testthat-3.3.0/testthat/tests/testthat/test-teardown.R | 4 testthat-3.3.0/testthat/tests/testthat/test-test-compiled-code.R |only testthat-3.3.0/testthat/tests/testthat/test-test-env.R | 2 testthat-3.3.0/testthat/tests/testthat/test-test-example.R | 7 testthat-3.3.0/testthat/tests/testthat/test-test-files.R | 22 testthat-3.3.0/testthat/tests/testthat/test-test-path.R | 2 testthat-3.3.0/testthat/tests/testthat/test-test-state.R | 5 testthat-3.3.0/testthat/tests/testthat/test-test-that.R | 111 + testthat-3.3.0/testthat/tests/testthat/test-try-again.R | 20 testthat-3.3.0/testthat/tests/testthat/test-verify-output.R | 18 testthat-3.3.0/testthat/vignettes/challenging-tests.Rmd |only testthat-3.3.0/testthat/vignettes/custom-expectation.Rmd | 304 ++++ testthat-3.3.0/testthat/vignettes/mocking.Rmd |only testthat-3.3.0/testthat/vignettes/parallel.Rmd | 8 testthat-3.3.0/testthat/vignettes/skipping.Rmd | 63 testthat-3.3.0/testthat/vignettes/snapshotting.Rmd | 219 ++- testthat-3.3.0/testthat/vignettes/test-fixtures.Rmd | 127 + testthat-3.3.0/testthat/vignettes/third-edition.Rmd | 13 359 files changed, 10573 insertions(+), 5048 deletions(-)
Title: Enrich Figures and Tables with Custom Headers and Footers and
More
Description: A simple and flexible tool designed to create enriched figures and tables by providing a way to add text
around them through predefined or custom layouts.
Any input which is convertible to 'grob' is supported, like 'ggplot', 'gt' or 'flextable'.
Based on R 'grid' graphics, for more details see Paul Murrell (2018) <doi:10.1201/9780429422768>.
Author: Maciej Nasinski [aut, cre],
Alexandra Wall [aut],
Sarah Robson [aut],
Pritish Dash [aut],
Jennifer Winick-Ng [aut],
Lily Nan [ctb],
Alphonse Kwizera [ctb],
Agota Bodoni [ctb],
Eilis Meldrum-Dolan [ctb],
Gary Cao [ctb],
UCB S.A., Belgium [cph, fnd]
Maintainer: Maciej Nasinski <Maciej.Nasinski@ucb.com>
Diff between gridify versions 0.7.4 dated 2025-08-28 and 0.7.5 dated 2025-11-13
DESCRIPTION | 10 - MD5 | 34 ++-- NAMESPACE | 1 NEWS.md | 6 R/pagination_utils.R |only README.md | 23 ++ inst/WORDLIST | 1 inst/doc/create_custom_layout.html | 5 inst/doc/gridify.Rmd | 9 - inst/doc/gridify.html | 18 +- inst/doc/multi_page_examples.R | 42 +--- inst/doc/multi_page_examples.Rmd | 67 ++----- inst/doc/multi_page_examples.html | 296 ++++++++++++++++------------------- inst/doc/simple_examples.html | 7 inst/doc/transparency.html | 7 man/paginate_table.Rd |only tests/testthat/test_paginate_table.R |only vignettes/gridify.Rmd | 9 - vignettes/multi_page_examples.Rmd | 67 ++----- vignettes/tables |only 20 files changed, 282 insertions(+), 320 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.8.3 dated 2025-09-04 and 3.8.4 dated 2025-11-13
DESCRIPTION | 6 MD5 | 226 NEWS.md | 13 R/name_backbone.r | 351 R/name_backbone_checklist.R | 313 R/occ_download_sql.R | 5 R/occ_search.r | 18 R/print_gbif.R | 5 R/zzz.r | 59 man/name_backbone.Rd | 173 man/name_backbone_checklist.Rd | 157 man/occ_download_sql.Rd | 7 man/occ_search.Rd | 5 tests/fixtures/collection_search.yml | 76 tests/fixtures/dataset.yml | 1603 tests/fixtures/dataset_doi.yml | 4 tests/fixtures/dataset_list_funs.yml | 9 tests/fixtures/dataset_search.yml | 7068 - tests/fixtures/dataset_search_facet.yml | 56 tests/fixtures/dataset_suggest.yml | 5231 tests/fixtures/dataset_suggest_description.yml | 2328 tests/fixtures/dataset_uuid_funs.yml |83175 ++++++------ tests/fixtures/installation_search.yml | 81 tests/fixtures/installation_uuid_funs.yml | 16 tests/fixtures/installations.yml | 1714 tests/fixtures/installations_deleted.yml | 39 tests/fixtures/installations_uuid.yml | 2 tests/fixtures/installations_uuid_data.yml | 2 tests/fixtures/institution_search.yml | 130 tests/fixtures/name_backbone.yml | 474 tests/fixtures/name_backbone_verbose_true.yml | 479 tests/fixtures/name_issues.yml | 106 tests/fixtures/name_lookup_constituentKey.yml | 1860 tests/fixtures/name_lookup_habitat.yml | 7952 - tests/fixtures/name_lookup_no_results.yml | 2 tests/fixtures/name_suggest.yml | 738 tests/fixtures/name_suggest_many_args.yml | 12 tests/fixtures/name_usage.yml | 4 tests/fixtures/name_usage_data_children.yml | 4 tests/fixtures/name_usage_data_descriptions.yml | 196 tests/fixtures/name_usage_data_distributions.yml | 468 tests/fixtures/name_usage_data_iucnRedListCategory.yml | 4 tests/fixtures/name_usage_data_media.yml | 4 tests/fixtures/name_usage_data_name.yml | 4 tests/fixtures/name_usage_data_parents.yml | 4 tests/fixtures/name_usage_data_references.yml | 4 tests/fixtures/name_usage_data_related.yml | 908 tests/fixtures/name_usage_data_speciesProfiles.yml | 6 tests/fixtures/name_usage_data_synonyms.yml | 4 tests/fixtures/name_usage_data_typeSpecimens.yml | 4 tests/fixtures/name_usage_data_vernacularNames.yml | 139 tests/fixtures/name_usage_fails_well.yml | 4 tests/fixtures/occ_count.yml | 70 tests/fixtures/occ_count_.yml | 30 tests/fixtures/occ_count_facet.yml | 106 tests/fixtures/occ_count_legacy_params.yml | 48 tests/fixtures/occ_data_args_with_many_inputs.yml | 1282 tests/fixtures/occ_data_catalog_number.yml | 424 tests/fixtures/occ_data_coordinateUncertaintyInMeters.yml | 629 tests/fixtures/occ_data_degreeOfEstablishment.yml | 806 tests/fixtures/occ_data_depth.yml | 70 tests/fixtures/occ_data_distanceFromCentroidInMeters.yml | 591 tests/fixtures/occ_data_dropped_fields.yml | 283 tests/fixtures/occ_data_elevation.yml | 195 tests/fixtures/occ_data_eventId.yml | 1060 tests/fixtures/occ_data_fails_well.yml | 12 tests/fixtures/occ_data_gadmGid.yml | 527 tests/fixtures/occ_data_identifiedBy.yml | 978 tests/fixtures/occ_data_isInCluster.yml | 597 tests/fixtures/occ_data_iucnRedListCategory.yml | 1010 tests/fixtures/occ_data_key_gbifid_character_class.yml | 236 tests/fixtures/occ_data_lifeStage.yml | 878 tests/fixtures/occ_data_networkKey.yml | 1002 tests/fixtures/occ_data_occurrenceId.yml | 909 tests/fixtures/occ_data_occurrencestatus.yml | 613 tests/fixtures/occ_data_organismQuantity.yml | 634 tests/fixtures/occ_data_organismQuantityType.yml | 302 tests/fixtures/occ_data_relativeOrganismQuantity.yml | 597 tests/fixtures/occ_data_scientificname.yml | 964 tests/fixtures/occ_data_speciesKey.yml | 979 tests/fixtures/occ_data_verbatimScientificName.yml | 957 tests/fixtures/occ_download_sql_1.yml | 16 tests/fixtures/occ_search_catalognumber.yml | 6 tests/fixtures/occ_search_coordinateUncertaintyInMeters.yml | 628 tests/fixtures/occ_search_degreeOfEstablishment.yml | 806 tests/fixtures/occ_search_depth.yml | 93 tests/fixtures/occ_search_distanceFromCentroidInMeters.yml | 597 tests/fixtures/occ_search_elevation.yml | 396 tests/fixtures/occ_search_eventId.yml | 1061 tests/fixtures/occ_search_fails_well.yml | 12 tests/fixtures/occ_search_gadmGid.yml | 527 tests/fixtures/occ_search_geoDistance.yml | 169 tests/fixtures/occ_search_hierarchy_data.yml | 190 tests/fixtures/occ_search_identifiedBy.yml | 988 tests/fixtures/occ_search_isInCluster.yml | 585 tests/fixtures/occ_search_iucnRedListCategory.yml | 1019 tests/fixtures/occ_search_key_gbifid_character_class.yml | 238 tests/fixtures/occ_search_lifeStage.yml | 876 tests/fixtures/occ_search_many_inputs.yml | 1285 tests/fixtures/occ_search_networkKey.yml | 1006 tests/fixtures/occ_search_occurrenceId.yml | 891 tests/fixtures/occ_search_occurrencestatus.yml | 619 tests/fixtures/occ_search_organismQuantity.yml | 634 tests/fixtures/occ_search_organismQuantityType.yml | 304 tests/fixtures/occ_search_relativeOrganismQuantity.yml | 555 tests/fixtures/occ_search_scientificname.yml | 972 tests/fixtures/occ_search_speciesKey.yml | 971 tests/fixtures/occ_search_verbatimScientificName.yml | 960 tests/fixtures/organizations_search_country.yml | 2 tests/fixtures/organizations_search_uuid.yml | 4196 tests/testthat/test-dataset_gridded.R | 21 tests/testthat/test-name_backbone.r | 99 tests/testthat/test-name_backbone_checklist.R | 251 tests/testthat/test-occ_search.r | 6 114 files changed, 78182 insertions(+), 75838 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-30 1.4
2022-01-10 1.3
Title: Smooth Survival Models, Including Generalized Survival Models
Description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0 [...truncated...]
Author: Mark Clements [aut, cre],
Xing-Rong Liu [aut],
Benjamin Christoffersen [aut],
Paul Lambert [ctb],
Lasse Hjort Jakobsen [ctb],
Alessandro Gasparini [ctb],
Gordon Smyth [cph],
Patrick Alken [cph],
Simon Wood [cph],
Rhys Ulerich [cph]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between rstpm2 versions 1.7.0 dated 2025-08-27 and 1.7.1 dated 2025-11-13
DESCRIPTION | 10 +++--- MD5 | 18 +++++------ R/multistate.R | 20 ++++++------ R/pm2-3.R | 15 +++++---- inst/doc/Introduction.pdf |binary inst/doc/SimpleGuide.pdf |binary inst/doc/multistate.pdf |binary inst/doc/predictnl.pdf |binary inst/working_code.R | 71 +++++++++++++++++++++++++++++++++++++++++++++ tests/testthat/test_base.R | 15 +++------ 10 files changed, 111 insertions(+), 38 deletions(-)
Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a
combination of narrative, figures, videos, exercises, and quizzes to
create self-paced tutorials for learning about R and R packages.
Author: Garrick Aden-Buie [aut, cre] ,
Barret Schloerke [aut] ,
JJ Allaire [aut, ccp],
Alexander Rossell Hayes [aut] ,
Nischal Shrestha [ctb] ,
Angela Li [ctb] ,
Posit, PBC [cph, fnd],
Ajax.org B.V. [ctb, cph] ,
Zeno Rocha [ctb, cph] ,
Nick Payne [ctb, cph] [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between learnr versions 0.11.5 dated 2023-09-28 and 0.11.6 dated 2025-11-13
learnr-0.11.5/learnr/tests/testthat/tutorials/hint-copy/hint-copy.html |only learnr-0.11.5/learnr/tests/testthat/tutorials/hint-div/hint-div.html |only learnr-0.11.5/learnr/tests/testthat/tutorials/hint-next/hint-next.html |only learnr-0.11.6/learnr/DESCRIPTION | 28 learnr-0.11.6/learnr/MD5 | 169 +-- learnr-0.11.6/learnr/NAMESPACE | 7 learnr-0.11.6/learnr/NEWS.md | 10 learnr-0.11.6/learnr/R/ace.R | 47 learnr-0.11.6/learnr/R/auto-complete.R | 57 - learnr-0.11.6/learnr/R/available_tutorials.R | 68 - learnr-0.11.6/learnr/R/debug_exercise_checker.R | 39 learnr-0.11.6/learnr/R/evaluators.R | 327 ++++-- learnr-0.11.6/learnr/R/events.R | 18 learnr-0.11.6/learnr/R/events_default.R | 59 - learnr-0.11.6/learnr/R/events_record.R | 18 learnr-0.11.6/learnr/R/exercise.R | 510 ++++++---- learnr-0.11.6/learnr/R/feedback.R | 40 learnr-0.11.6/learnr/R/html-dependencies.R | 4 learnr-0.11.6/learnr/R/html_selector.R | 33 learnr-0.11.6/learnr/R/http-handlers.R | 245 ++-- learnr-0.11.6/learnr/R/i18n.R | 30 learnr-0.11.6/learnr/R/identifiers.R | 40 learnr-0.11.6/learnr/R/initialize.R | 27 learnr-0.11.6/learnr/R/knitr-hooks.R | 263 +++-- learnr-0.11.6/learnr/R/learnr_messages.R | 7 learnr-0.11.6/learnr/R/mock_exercise.R | 45 learnr-0.11.6/learnr/R/mutate_tags.R | 39 learnr-0.11.6/learnr/R/options.R | 28 learnr-0.11.6/learnr/R/praise.R | 28 learnr-0.11.6/learnr/R/question_answers.R | 26 learnr-0.11.6/learnr/R/question_checkbox.R | 11 learnr-0.11.6/learnr/R/question_methods.R | 8 learnr-0.11.6/learnr/R/question_numeric.R | 33 learnr-0.11.6/learnr/R/question_radio.R | 15 learnr-0.11.6/learnr/R/question_text.R | 30 learnr-0.11.6/learnr/R/quiz.R | 173 ++- learnr-0.11.6/learnr/R/quiz_print.R | 85 + learnr-0.11.6/learnr/R/run.R | 203 ++- learnr-0.11.6/learnr/R/storage.R | 298 +++-- learnr-0.11.6/learnr/R/tutorial-format.R | 88 + learnr-0.11.6/learnr/R/tutorial-state.R | 55 - learnr-0.11.6/learnr/R/tutorial_package_dependencies.R | 24 learnr-0.11.6/learnr/R/utils.R | 22 learnr-0.11.6/learnr/R/zzz.R | 2 learnr-0.11.6/learnr/build/vignette.rds |binary learnr-0.11.6/learnr/inst/doc/multilang.R | 49 learnr-0.11.6/learnr/inst/doc/multilang.Rmd | 7 learnr-0.11.6/learnr/inst/doc/multilang.html | 20 learnr-0.11.6/learnr/inst/doc/shinyapps-publishing.html | 8 learnr-0.11.6/learnr/inst/examples/apparmor/apparmor_evaluator.R | 16 learnr-0.11.6/learnr/inst/internals/i18n_random_phrases.rds |binary learnr-0.11.6/learnr/inst/internals/i18n_translations.rds |binary learnr-0.11.6/learnr/inst/staticexports/knitr_engine_caption.R | 1 learnr-0.11.6/learnr/inst/staticexports/strings.R | 1 learnr-0.11.6/learnr/man/mock_exercise.Rd | 2 learnr-0.11.6/learnr/man/rmd-fragments/badges.Rmd | 6 learnr-0.11.6/learnr/man/tutorial.Rd | 4 learnr-0.11.6/learnr/tests/testthat.R | 1 learnr-0.11.6/learnr/tests/testthat/helpers-shinytest2.R | 89 + learnr-0.11.6/learnr/tests/testthat/helpers.R | 14 learnr-0.11.6/learnr/tests/testthat/test-auto-complete.R | 47 learnr-0.11.6/learnr/tests/testthat/test-available-tutorials.R | 5 learnr-0.11.6/learnr/tests/testthat/test-cookies.R | 11 learnr-0.11.6/learnr/tests/testthat/test-dependency.R | 1 learnr-0.11.6/learnr/tests/testthat/test-duplicate_env.R | 2 learnr-0.11.6/learnr/tests/testthat/test-evaluators.R | 237 ++-- learnr-0.11.6/learnr/tests/testthat/test-events.R | 19 learnr-0.11.6/learnr/tests/testthat/test-exercise.R | 275 +++-- learnr-0.11.6/learnr/tests/testthat/test-feedback.R | 14 learnr-0.11.6/learnr/tests/testthat/test-i18n.R | 22 learnr-0.11.6/learnr/tests/testthat/test-install-dependencies.R | 22 learnr-0.11.6/learnr/tests/testthat/test-knitr-hooks.R | 72 + learnr-0.11.6/learnr/tests/testthat/test-mock_exercise.R | 20 learnr-0.11.6/learnr/tests/testthat/test-mutate_tags.R | 12 learnr-0.11.6/learnr/tests/testthat/test-options-reveal_solution.R | 29 learnr-0.11.6/learnr/tests/testthat/test-options.R | 2 learnr-0.11.6/learnr/tests/testthat/test-praise.R | 20 learnr-0.11.6/learnr/tests/testthat/test-question_answers.R | 88 + learnr-0.11.6/learnr/tests/testthat/test-question_checkbox.R | 3 learnr-0.11.6/learnr/tests/testthat/test-question_radio.R | 8 learnr-0.11.6/learnr/tests/testthat/test-question_text.R | 17 learnr-0.11.6/learnr/tests/testthat/test-quiz.R | 26 learnr-0.11.6/learnr/tests/testthat/test-run.R | 26 learnr-0.11.6/learnr/tests/testthat/test-shinytest2-hints.R | 406 +++---- learnr-0.11.6/learnr/tests/testthat/test-storage.R | 18 learnr-0.11.6/learnr/tests/testthat/test-tutorial-state.R | 38 learnr-0.11.6/learnr/vignettes/multilang.Rmd | 7 87 files changed, 3139 insertions(+), 1785 deletions(-)
Title: Analyse Audio Recordings and Automatically Extract Animal
Vocalizations
Description: Contains all the necessary tools to process audio recordings of
various formats (e.g., WAV, WAC, MP3, ZC), filter noisy files,
display audio signals, detect and extract automatically acoustic
features for further analysis such as classification.
Author: Jean Marchal [aut, cre],
Francois Fabianek [aut],
Christopher Scott [aut],
Chris Corben [ctb, cph] ,
David Riggs [ctb, cph] ,
Peter Wilson [ctb, cph] ,
Wildlife Acoustics, inc. [ctb, cph] ,
Jordan Biserkov [ctb],
WavX, inc. [cph]
Maintainer: Jean Marchal <jean.marchal@wavx.ca>
Diff between bioacoustics versions 0.2.8 dated 2022-02-08 and 0.2.10 dated 2025-11-13
DESCRIPTION | 10 MD5 | 52 NEWS.md | 20 R/bioacoustics.R | 48 R/metadata.R | 4 R/print.R | 26 R/read_audio.R | 6 R/read_zc.R | 1050 ++++++------- R/spectro.R | 414 ++--- R/tools.R | 288 +-- README.md | 46 build/vignette.rds |binary configure | 3501 +++++++++++++++++++++++---------------------- configure.ac | 254 +-- inst/doc/introduction.R | 12 inst/doc/introduction.Rmd | 16 inst/doc/introduction.html | 537 ++---- inst/doc/tutorial.R | 654 ++++---- inst/doc/tutorial.Rmd | 19 inst/doc/tutorial.html | 543 ++---- man/read_audio.Rd | 6 src/Makevars.in | 1 src/Makevars.ucrt | 3 src/Makevars.win | 2 tools/winlibs.R | 68 vignettes/introduction.Rmd | 16 vignettes/tutorial.Rmd | 19 27 files changed, 3756 insertions(+), 3859 deletions(-)
Title: Integrated Interface of Bayesian Single Index Models using
'nimble'
Description: Provides tools for fitting Bayesian single index models with flexible choices of priors for both the index and the link function. The package implements model estimation and posterior inference using efficient MCMC algorithms built on the 'nimble' framework, allowing users to specify, extend, and simulate models in a unified and reproducible manner. The following methods are implemented in the package: Antoniadis et al. (2004) <https://www.jstor.org/stable/24307224>, Wang (2009) <doi:10.1016/j.csda.2008.12.010>, Choi et al. (2011) <doi:10.1080/10485251003768019>, Dhara et al. (2019) <doi:10.1214/19-BA1170>, McGee et al. (2023) <doi:10.1111/biom.13569>.
Author: Seowoo Jung [aut, cre],
Eun-kyung Lee [aut]
Maintainer: Seowoo Jung <jsw1347@ewha.ac.kr>
Diff between BayesSIM versions 0.1.4 dated 2025-10-30 and 0.1.5 dated 2025-11-13
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)