Title: Structural Equation Modeling and Twin Modeling in R
Description: Quickly create, run, and report structural equation models, and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] ,
Nathan Gillespie [wit],
Hermine Maes [ctb],
Michael C. Neale [ctb],
Joshua N. Pritikin [ctb],
Luis De Araujo [ctb],
Brenton Wiernik [ctb],
Michael Zakharin [wit]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.59.0 dated 2025-10-21 and 4.60.0 dated 2025-11-17
DESCRIPTION | 8 ++--- MD5 | 51 +++++++++++++++++----------------- NAMESPACE | 1 R/build_run_modify.R | 14 ++++----- R/financial_functions.R | 60 ++++++++++++++++++++++++++++++++++++++++ R/umxDoC.R | 12 ++++---- R/umxPower.R | 4 +- R/umx_build_high_level_models.R | 4 +- R/umx_build_umxACEv.R | 2 - R/umx_build_umxSimplex.R | 2 - build/partial.rdb |binary inst/WORDLIST | 26 +++++++++-------- man/fin_CAGR.Rd |only man/power.ACE.test.Rd | 2 - man/umxACE.Rd | 6 ++-- man/umxACEcov.Rd | 2 - man/umxACEv.Rd | 2 - man/umxCP.Rd | 2 - man/umxDiffMZ.Rd | 6 ++-- man/umxDiscTwin.Rd | 4 +- man/umxDoC.Rd | 2 - man/umxEFA.Rd | 2 - man/umxGxE.Rd | 2 - man/umxIP.Rd | 2 - man/umxPower.Rd | 2 - man/umxSimplex.Rd | 2 - man/umxTwoStage.Rd | 2 - 27 files changed, 143 insertions(+), 79 deletions(-)
Title: The Most Comprehensive R Package for Turkish Election Results
Description: Includes the results of general, local, and presidential elections held in Turkey between 1995 and 2024, broken down by provinces and overall national results. It facilitates easy processing of this data and the creation of visual representations based on these election results.
Author: Ozancan Ozdemir [aut, cre]
Maintainer: Ozancan Ozdemir <ozancanozdemir@gmail.com>
Diff between turkeyelections versions 0.1.3 dated 2025-11-13 and 0.1.4 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
More information about turkeyelections at CRAN
Permanent link
Title: Water Quality Assessment and Environmental Compliance in Brazil
Description: Tools to import, clean, validate, and analyze freshwater quality data in Brazil. Implements water quality indices including the Water Quality Index (WQI/IQA), the Trophic State Index (TSI/IET) after Carlson (1977) <doi:10.4319/lo.1977.22.2.0361> and Lamparelli (2004) <https://www.teses.usp.br/teses/disponiveis/41/41134/tde-20032006-075813/publico/TeseLamparelli2004.pdf>, and the National Sanitation Foundation Water Quality Index (NSF WQI) <doi:10.1007/s11157-023-09650-7>. The package also checks compliance with Brazilian standard CONAMA Resolution 357/2005 <https://conama.mma.gov.br/?id=450&option=com_sisconama&task=arquivo.download> and generates reproducible reports for routine monitoring workflows.
The example dataset (`wq_demo`) is now a real subset from monitoring data (BURANHEM river, 2020-2024, 4 points, 20 rows, 14 columns including extra `rio`, `lat`, `lon`). All core examples and vignettes use this realistic sample, improving reproducibility an [...truncated...]
Author: Vinicius Saraiva Santos [aut, cre]
Maintainer: Vinicius Saraiva Santos <vinisaraiva@gmail.com>
Diff between tikatuwq versions 0.7.3 dated 2025-10-31 and 0.8.0 dated 2025-11-17
DESCRIPTION | 17 - MD5 | 72 ++++--- NAMESPACE | 18 + NEWS.md | 7 R/analysis_text.R | 4 R/conama.R | 16 + R/data_wq_demo.R | 18 + R/iet.R | 176 +++++++++++++----- R/iet_lamparelli.R | 162 ++++++++++++---- R/io_clean.R | 310 ++++++++++++++++++++++++++++---- R/iqa.R | 131 ++++++++----- R/plot_map.R | 230 +++++++++++++---------- R/utils_sanitize.R | 100 ++++++++++ R/wq_buranhem.R |only README.md | 39 ++-- build/vignette.rds |binary data/wq_demo.rda |binary inst/doc/tikatuwq-methods.R |only inst/doc/tikatuwq-methods.Rmd |only inst/doc/tikatuwq-methods.html |only inst/doc/tikatuwq-workflow.R |only inst/doc/tikatuwq-workflow.Rmd |only inst/doc/tikatuwq-workflow.html |only inst/doc/tikatuwq.html | 103 +++------- inst/extdata/wq_demo_README.txt | 8 man/classify_iqa.Rd |only man/classify_tsi_carlson.Rd |only man/classify_tsi_lamparelli.Rd |only man/clean_units.Rd | 24 +- man/fix_coords.Rd |only man/iet_carlson.Rd | 91 +++++---- man/iet_lamparelli.Rd | 67 ++++-- man/iqa.Rd | 81 ++++---- man/plot_map.Rd | 65 ++++-- man/read_wq.Rd | 56 +++-- man/validate_wq.Rd | 16 + man/wq_demo.Rd | 28 +- tests/testthat/test-clean_units.R |only tests/testthat/test-conama_text.R |only tests/testthat/test-fix_coords.R |only tests/testthat/test-generate_analysis.R |only tests/testthat/test-nd-ld-policy.R |only tests/testthat/test-plot_functions.R |only tests/testthat/test-plot_map.R | 39 ++-- tests/testthat/test-render_report.R |only vignettes/tikatuwq-methods.Rmd |only vignettes/tikatuwq-workflow.Rmd |only 47 files changed, 1312 insertions(+), 566 deletions(-)
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goals was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models. For more details see the paper by
Widgren, Bauer, Eriksson and Engblom (2019)
<doi:10.18637/jss.v091.i12>. The package also provides
function [...truncated...]
Author: Stefan Widgren [aut, cre] ,
Robin Eriksson [aut] ,
Stefan Engblom [aut] ,
Pavol Bauer [aut] ,
Thomas Rosendal [ctb] ,
Ivana Rodriguez Ewerloef [ctb] ,
Attractive Chaos [cph]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 10.0.0 dated 2025-11-13 and 10.1.0 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ inst/doc/SimInf.pdf |binary src/solvers/SimInf_solver.c | 11 +++++++---- src/solvers/SimInf_solver_aem.c | 15 ++++++++++----- src/solvers/SimInf_solver_mssm.c | 12 ++++++++---- src/solvers/SimInf_solver_ssm.c | 12 ++++++++---- 8 files changed, 51 insertions(+), 27 deletions(-)
Title: Aid Querying 'nomis' and 'Office for National Statistics Open
Geography' APIs
Description: Facilitates extraction of geospatial data from the 'Office for National Statistics Open Geography' and 'nomis' Application Programming Interfaces (APIs). Simplifies process of querying 'nomis' datasets <https://www.nomisweb.co.uk/> and extracting desired datasets in dataframe format. Extracts area shapefiles at chosen resolution from 'Office for National Statistics Open Geography' <https://geoportal.statistics.gov.uk/>.
Author: Michael Stocks [aut, cre],
Andrew Christy [aut],
James Macpherson [aut],
Hadyn Jenkins [aut],
Crown Copyright
[cph]
Maintainer: Michael Stocks <sgapi.orhub@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2025-05-08
Diff between sgapi versions 1.1.0 dated 2025-05-08 and 1.1.1 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-list_boundaries.R | 24 ++++++++++++------------ 3 files changed, 17 insertions(+), 17 deletions(-)
Title: Privacy-Preserving Distributed Algorithms
Description: A collection of privacy-preserving distributed algorithms (PDAs) for conducting federated statistical learning across multiple data sites. The PDA framework includes models for various tasks such as regression, trial emulation, causal inference, design-specific analysis, and clustering. The PDA algorithms run on a lead site and only require summary statistics from collaborating sites, with one or few iterations. The package can be used together with the online data transfer system (<https://pda-ota.pdamethods.org/>) for safe and convenient collaboration. For more information, please visit our software websites: <https://github.com/Penncil/pda>, and <https://pdamethods.org/>.
Author: Chongliang Luo [cre],
Rui Duan [aut],
Mackenzie Edmondson [aut],
Jiayi Tong [aut],
Xiaokang Liu [aut],
Kenneth Locke [aut],
Jie Hu [aut],
Bingyu Zhang [aut],
Yicheng Shen [aut],
Yudong Wang [aut],
Yiwen Lu [aut],
Lu Li [aut],
Yong Chen [aut],
Penn Co [...truncated...]
Maintainer: Chongliang Luo <luocl3009@gmail.com>
Diff between pda versions 1.2.8 dated 2025-03-10 and 1.3.0 dated 2025-11-17
DESCRIPTION | 40 MD5 | 109 +- NAMESPACE | 11 NEWS.md | 63 - R/COLA.R |only R/DLM.R | 10 R/DPQL.R | 14 R/DisC2o.R |only R/LATTE.R |only R/ODACH_CC.R |only R/ODACT.R |only R/RcppExports.R | 98 +- R/case_cohort.R |only R/data.R | 618 +++++++++++-- R/dlmm.R | 59 + R/latte-misc.R |only R/odact-misc.R |only R/pda.R | 1864 ++++++++++++++++++++++++----------------- R/zzz.R |only build/partial.rdb |binary data/COLA_covid.rda |only data/LATTE_ADRD.rda |only data/long_covid.rda |only data/nominal_data_hetero.RData |only data/odach_cc.rda |only data/ordinal_data.RData |only demo/00Index | 5 demo/COLA.R |only demo/DLM.R | 25 demo/DPQL.R | 74 - demo/DisC2o.R |only demo/LATTE.R |only demo/ODAC.R | 1 demo/ODACAT.R | 1 demo/ODACH.R | 1 demo/ODACH_CC.R |only demo/ODACT.R |only demo/ODAH.R | 94 -- demo/ODAL.R | 19 demo/dGEM.R | 3 man/COLA.estimate.Rd |only man/COLA.initialize.Rd |only man/COLA_covid.Rd |only man/DisC2o.AIPWestimate.Rd |only man/DisC2o.OMderive.Rd |only man/DisC2o.OMestimate.Rd |only man/DisC2o.OMinitialize.Rd |only man/DisC2o.PSderive.Rd |only man/DisC2o.PSestimate.Rd |only man/DisC2o.PSinitialize.Rd |only man/DisC2o.synthesize.Rd |only man/LATTE.estimate.Rd |only man/LATTE.initialize.Rd |only man/LATTE_ADRD.Rd |only man/ODACAT_nominal.Rd | 14 man/ODACAT_ordinal.Rd | 2 man/ODACH_CC.derive.Rd |only man/ODACH_CC.estimate.Rd |only man/ODACH_CC.initialize.Rd |only man/ODACH_CC.synthesize.Rd |only man/ODACT.derive.Rd |only man/ODACT.estimate.Rd |only man/ODACT.initialize.Rd |only man/ODACT.synthesize.Rd |only man/cola_glmm.Rd |only man/estimatePool.Rd |only man/generate_CSU_site.Rd |only man/getCloudConfig.Rd | 4 man/long_covid.Rd |only man/make_patterns.Rd |only man/nominal_data_hetero.Rd |only man/odach_cc.Rd |only man/ordinal_data.Rd |only man/pda.Rd | 111 -- man/pdaCatalog.Rd |only man/pdaPut.Rd | 8 man/pdaSync.Rd | 8 man/run_pooled_analysis.Rd |only src/DisC2o.cpp |only src/RcppExports.cpp | 143 +++ src/odact.cpp |only src/rcpp_coxph.h | 4 src/rcpp_odach_cc.cpp |only 83 files changed, 2138 insertions(+), 1265 deletions(-)
Title: Joint Estimation of Latent Groups and Group-Specific
Coefficients in (Time-Varying) Panel Data Models
Description: Latent group structures are a common challenge in panel data analysis. Disregarding group-level heterogeneity can introduce bias. Conversely, estimating individual coefficients for each cross-sectional unit is inefficient and may lead to high uncertainty.
This package addresses the issue of unobservable group structures by implementing the pairwise adaptive group fused Lasso (PAGFL) by Mehrabani (2023) <doi:10.1016/j.jeconom.2022.12.002>. PAGFL identifies latent group structures and group-specific coefficients in a single step.
On top of that, we extend the PAGFL to time-varying coefficient functions (FUSE-TIME), following Haimerl et al. (2025) <doi:10.48550/arXiv.2503.23165>.
Author: Paul Haimerl [aut, cre] ,
Stephan Smeekes [ctb] ,
Ines Wilms [ctb] ,
Ali Mehrabani [ctb]
Maintainer: Paul Haimerl <paul.haimerl@econ.au.dk>
Diff between PAGFL versions 1.1.3 dated 2025-02-20 and 1.1.4 dated 2025-11-17
PAGFL-1.1.3/PAGFL/R/Checks.R |only PAGFL-1.1.3/PAGFL/R/Sim.R |only PAGFL-1.1.3/PAGFL/R/pagfl_tv.R |only PAGFL-1.1.3/PAGFL/man/tv_pagfl.Rd |only PAGFL-1.1.3/PAGFL/tests/testthat/fixtures/tv_pagfl_resid.rds |only PAGFL-1.1.3/PAGFL/tests/testthat/fixtures/tv_pagfl_sim.rds |only PAGFL-1.1.3/PAGFL/tests/testthat/fixtures/tv_pagfl_sim_2.rds |only PAGFL-1.1.4/PAGFL/DESCRIPTION | 21 PAGFL-1.1.4/PAGFL/MD5 | 77 - PAGFL-1.1.4/PAGFL/NAMESPACE | 17 PAGFL-1.1.4/PAGFL/NEWS.md | 15 PAGFL-1.1.4/PAGFL/R/RcppExports.R | 4 PAGFL-1.1.4/PAGFL/R/checks.R |only PAGFL-1.1.4/PAGFL/R/fuse_time.R |only PAGFL-1.1.4/PAGFL/R/grouped_plm.R | 41 PAGFL-1.1.4/PAGFL/R/grouped_tv_plm.R | 60 - PAGFL-1.1.4/PAGFL/R/helper.R | 110 +- PAGFL-1.1.4/PAGFL/R/pagfl.R | 45 PAGFL-1.1.4/PAGFL/R/s3_methods.R | 2 PAGFL-1.1.4/PAGFL/R/s3_methods_grouped_tv_plm.R | 4 PAGFL-1.1.4/PAGFL/R/s3_methods_tv.R | 72 - PAGFL-1.1.4/PAGFL/R/sim.R |only PAGFL-1.1.4/PAGFL/R/sim_tv.R | 26 PAGFL-1.1.4/PAGFL/README.md | 167 +-- PAGFL-1.1.4/PAGFL/build/partial.rdb |binary PAGFL-1.1.4/PAGFL/man/figures/README-unnamed-chunk-5-1.png |binary PAGFL-1.1.4/PAGFL/man/figures/README-unnamed-chunk-8-1.png |binary PAGFL-1.1.4/PAGFL/man/figures/README-unnamed-chunk-9-1.png |binary PAGFL-1.1.4/PAGFL/man/figures/icon.png |only PAGFL-1.1.4/PAGFL/man/fuse_time.Rd |only PAGFL-1.1.4/PAGFL/man/grouped_plm.Rd | 35 PAGFL-1.1.4/PAGFL/man/grouped_tv_plm.Rd | 252 ++--- PAGFL-1.1.4/PAGFL/man/pagfl.Rd | 39 PAGFL-1.1.4/PAGFL/man/sim_DGP.Rd | 28 PAGFL-1.1.4/PAGFL/man/sim_tv_DGP.Rd | 26 PAGFL-1.1.4/PAGFL/src/PAGFL-package.cpp | 10 PAGFL-1.1.4/PAGFL/src/RcppExports.cpp | 10 PAGFL-1.1.4/PAGFL/tests/testthat/_snaps/methods.md | 26 PAGFL-1.1.4/PAGFL/tests/testthat/fixtures/fuse_time_resid.rds |only PAGFL-1.1.4/PAGFL/tests/testthat/fixtures/fuse_time_sim.rds |only PAGFL-1.1.4/PAGFL/tests/testthat/fixtures/fuse_time_sim_2.rds |only PAGFL-1.1.4/PAGFL/tests/testthat/fixtures/test_helper.R | 8 PAGFL-1.1.4/PAGFL/tests/testthat/test-inputs.R | 36 PAGFL-1.1.4/PAGFL/tests/testthat/test-methods.R | 452 +++++----- PAGFL-1.1.4/PAGFL/tests/testthat/test-oracle.R | 276 +++--- PAGFL-1.1.4/PAGFL/tests/testthat/test-pagfl_results.R | 230 ++--- PAGFL-1.1.4/PAGFL/tests/testthat/test-sim.R | 26 47 files changed, 1105 insertions(+), 1010 deletions(-)
Title: Matrices in Data Frames
Description: Provides functions to collapse a tidy data frame into matrices in a data frame
and expand a data frame of matrices into a tidy data frame.
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsindf versions 0.4.10 dated 2025-05-26 and 0.4.11 dated 2025-11-17
DESCRIPTION | 16 +++++------ MD5 | 46 +++++++++++++++++---------------- NAMESPACE | 2 + NEWS.md | 15 ++++++++++ R/collapse.R | 2 - R/excel.R |only R/expand.R | 4 +- R/utilities.R | 36 ++++--------------------- README.md | 10 +++++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 ++-- inst/WORDLIST | 3 +- inst/doc/iris_pca.html | 14 +++++----- inst/doc/matsindf.Rmd | 6 ++-- inst/doc/matsindf.html | 15 +++++----- inst/doc/midf_apply_primer.Rmd | 2 - inst/doc/midf_apply_primer.html | 15 +++++----- man/check_worksheet_name_violations.Rd |only man/collapse_to_matrices.Rd | 2 - man/expand_to_tidy.Rd | 4 +- man/write_mats_to_excel.Rd |only tests/testthat/test-excel.R |only tests/testthat/test-expand.R | 3 +- vignettes/matsindf.Rmd | 6 ++-- vignettes/midf_apply_primer.Rmd | 2 - 26 files changed, 107 insertions(+), 102 deletions(-)
Title: Lightweight One-Line Resolving Microbial Ecology Program
Description: Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.
Author: Ningqi Wang [aut, cre, cph],
Yaozhong Zhang [aut],
Gaofei Jiang [aut]
Maintainer: Ningqi Wang <2434066068@qq.com>
Diff between LorMe versions 2.0.0 dated 2025-11-16 and 2.0.1 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/LorMe_pipeline.R | 1 + data/Facet_group.rda |binary data/Three_group.rda |binary data/Two_group.rda |binary man/LorMe_pipeline.Rd | 1 + 7 files changed, 11 insertions(+), 9 deletions(-)
Title: High-Dimensional Mediation Analysis
Description: Allows to estimate and test high-dimensional mediation effects based on advanced mediator screening and penalized regression techniques. Methods used in the package refer to Zhang H, Zheng Y, Hou L, Liu L, HIMA: An R Package for High-Dimensional Mediation Analysis. Journal of Data Science. (2025). <doi:10.6339/25-JDS1192>.
Author: Yinan Zheng [aut, cre] ,
Haixiang Zhang [aut],
Lifang Hou [aut],
Lei Liu [aut, cph]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
Diff between HIMA versions 2.3.2 dated 2025-06-11 and 2.3.3 dated 2025-11-17
DESCRIPTION | 20 +- MD5 | 62 +++---- NAMESPACE | 4 NEWS.md | 4 R/HIMA-package.R | 39 ++-- R/hima.R | 280 ++++++++++++++++++++++----------- R/hima_classic.R | 18 -- R/hima_data.R | 35 ++++ R/hima_dblasso.R | 25 +- R/hima_efficient.R | 10 - R/hima_microbiome.R | 24 ++ R/hima_quantile.R | 41 ++++ R/hima_survival.R | 5 R/hima_survival_long.R |only R/utils.R | 47 ++++- README.md | 30 +-- data/BinaryOutcome.rda |binary data/ContinuousOutcome.rda |binary data/MicrobiomeData.rda |binary data/QuantileData.rda |binary data/SurvivalData.rda |binary data/SurvivalLongData.rda |only inst/CITATION | 55 +++++- inst/doc/hima-vignette.R | 19 ++ inst/doc/hima-vignette.Rmd | 31 +++ inst/doc/hima-vignette.html | 118 +++++++++---- inst/scripts/Example_data_generation.R | 221 ++++++++++++++++++++------ man/HIMA-package.Rd | 21 +- man/SurvivalLongData.Rd |only man/hima.Rd | 71 ++++++-- man/hima_classic.Rd | 2 man/hima_survival.Rd | 2 man/hima_survival_long.Rd |only vignettes/hima-vignette.Rmd | 31 +++ 34 files changed, 864 insertions(+), 351 deletions(-)
Title: Headers and Static Libraries for 'HDF5'
Description: 'HDF5' (Hierarchical Data Format 5) is a high-performance
library and file format for storing and managing large, complex
data. This package provides the static libraries and headers for
the 'HDF5' 'C' library (release 1.14.6). It is intended for R
package developers to use in the 'LinkingTo' field, which
eliminates the need for users to install system-level 'HDF5'
dependencies. This build is compiled with thread-safety enabled
and supports dynamic loading of external compression filters.
'HDF5' is developed by 'The HDF Group' <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
The HDF Group [cph] ,
Jean-loup Mark [cph] ,
Gailly Adler [cph]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
This is a re-admission after prior archival of version 1.14.6.4 dated 2025-11-10
Diff between hdf5lib versions 1.14.6.4 dated 2025-11-10 and 1.14.6.7 dated 2025-11-17
hdf5lib-1.14.6.4/hdf5lib/inst/LICENSE.note |only hdf5lib-1.14.6.4/hdf5lib/inst/licenses |only hdf5lib-1.14.6.7/hdf5lib/DESCRIPTION | 22 +++---- hdf5lib-1.14.6.7/hdf5lib/MD5 | 16 ++--- hdf5lib-1.14.6.7/hdf5lib/NEWS.md | 18 ++++++ hdf5lib-1.14.6.7/hdf5lib/README.md | 84 +++++++++++++---------------- hdf5lib-1.14.6.7/hdf5lib/configure | 6 +- hdf5lib-1.14.6.7/hdf5lib/configure.win | 6 +- hdf5lib-1.14.6.7/hdf5lib/inst/COPYRIGHTS |only hdf5lib-1.14.6.7/hdf5lib/src/hdf5.tar.gz |binary 10 files changed, 82 insertions(+), 70 deletions(-)
Title: Data Package for the 2016 United States Federal Elections
Description: Easily analyze relational data from the United States 2016 federal
election cycle as reported by the Federal Election Commission.
This package contains data about candidates, committees, and a
variety of different financial expenditures. Data is from <https://www.fec.gov/data/browse-data/?tab=bulk-data>.
Author: Marium Tapal [aut, cre] ,
Rana Gahwagy [aut],
Irene Ryan [aut],
Benjamin S. Baumer [aut]
Maintainer: Marium Tapal <mariumtapal@gmail.com>
Diff between fec16 versions 0.1.5 dated 2025-09-01 and 0.1.6 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/fec16-package.R | 2 +- build/vignette.rds |binary inst/doc/fec_vignette.html | 5 +++-- man/fec16.Rd | 2 +- 6 files changed, 14 insertions(+), 13 deletions(-)
Title: Data and Code for Empirical Research in Accounting
Description: Handy functions and data to support the course book 'Empirical Research in Accounting: Tools and Methods' (1st ed.). Chapman and Hall/CRC. <doi:10.1201/9781003456230> and <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>
Diff between farr versions 0.3.2 dated 2025-09-01 and 1.0.0 dated 2025-11-17
DESCRIPTION | 13 +++--- MD5 | 80 +++++++++++++++++++++--------------------- NEWS.md | 10 ++++- R/data.R | 24 ++++++------ R/get_annc_dates.R | 3 - R/get_event_cum_rets.R | 2 - R/get_event_cum_rets_mth.R | 3 - R/get_event_dates.R | 3 - R/get_event_rets.R | 1 R/get_me_breakpoints.R | 12 ++++-- R/get_test_scores.R | 2 - R/get_trading_dates.R | 2 - R/roc.R | 2 - R/rusboost.R | 2 + R/system_time.R | 2 - R/truncate.R | 4 +- R/winsorize.R | 4 +- build/partial.rdb |binary data/gvkey_ciks.rda |binary man/aaer_dates.Rd | 2 - man/auc.Rd | 2 - man/by_tag_year.Rd | 2 - man/cmsw_2018.Rd | 2 - man/fhk_pilot.Rd | 3 - man/get_annc_dates.Rd | 3 - man/get_event_cum_rets.Rd | 2 - man/get_event_cum_rets_mth.Rd | 3 - man/get_event_dates.Rd | 3 - man/get_event_rets.Rd | 1 man/get_me_breakpoints.Rd | 7 ++- man/get_test_scores.Rd | 2 - man/get_trading_dates.Rd | 2 - man/gvkey_ciks.Rd | 2 - man/llz_2018.Rd | 4 +- man/rusboost.Rd | 2 - man/sho_r3000.Rd | 2 - man/sho_tickers.Rd | 2 - man/system_time.Rd | 2 - man/truncate.Rd | 4 +- man/undisclosed_names.Rd | 6 +-- man/winsorize.Rd | 4 +- 41 files changed, 118 insertions(+), 113 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.4.1 dated 2025-10-16 and 1.4.2 dated 2025-11-17
DESCRIPTION | 6 MD5 | 60 +-- NEWS.md | 7 R/version.R | 2 src/altrepdataframe_relation.cpp | 1 src/altrepdataframe_relation.dd | 665 +++++++++++++++++++++++++++++++++- src/connection.cpp | 4 src/connection.dd | 666 +++++++++++++++++++++++++++++++++- src/convert.cpp | 1 src/convert.dd | 661 +++++++++++++++++++++++++++++++++ src/database.cpp | 9 src/database.dd | 668 ++++++++++++++++++++++++++++++++++ src/duckdb.tar.xz |binary src/register.cpp | 15 src/register.dd | 700 +++++++++++++++++++++++++++++++++++ src/relational.cpp | 39 - src/relational.dd | 709 ++++++++++++++++++++++++++++++++++++ src/reltoaltrep.cpp | 21 - src/reltoaltrep.dd | 761 ++++++++++++++++++++++++++++++++++++++ src/rfuns.cpp | 55 +- src/rfuns.dd | 654 +++++++++++++++++++++++++++++++++ src/scan.cpp | 3 src/scan.dd | 664 +++++++++++++++++++++++++++++++++ src/statement.cpp | 2 src/statement.dd | 762 ++++++++++++++++++++++++++++++++++++++- src/transform.cpp | 4 src/transform.dd | 663 +++++++++++++++++++++++++++++++++ src/types.cpp | 7 src/types.dd | 663 +++++++++++++++++++++++++++++++++ src/utils.cpp | 6 src/utils.dd | 671 ++++++++++++++++++++++++++++++++++ 31 files changed, 9006 insertions(+), 143 deletions(-)
Title: Cohort Generation for the OMOP Common Data Model
Description: Generate cohorts and subsets using an Observational
Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database.
Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or
SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Author: Anthony Sena [aut, cre],
Jamie Gilbert [aut],
Gowtham Rao [aut],
Freddy Avila Cruz [aut],
Martijn Schuemie [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>
Diff between CohortGenerator versions 1.0.0 dated 2025-11-12 and 1.0.1 dated 2025-11-17
DESCRIPTION | 12 ++++---- MD5 | 34 +++++++++++------------ NEWS.md | 6 ++++ R/CohortConstruction.R | 2 - R/CohortSample.R | 2 - R/NegativeControlCohorts.R | 32 ++++++++++----------- R/RunCohortGeneration.R | 2 - R/TemplateUnion.R | 4 +- README.md | 1 inst/doc/CreatingCohortSubsetDefinitions.html | 4 +- inst/doc/GeneratingCohorts.pdf |binary inst/doc/SamplingCohorts.pdf |binary inst/doc/UsingTemplateCohorts.html | 4 +- tests/testthat/setup.R | 2 - tests/testthat/test-CohortConstructionAndStats.R | 20 +++++++++++++ tests/testthat/test-CohortSample.R | 22 ++++++++++++++ tests/testthat/test-NegativeControlCohorts.R | 26 +++++++++++++++++ tests/testthat/test-RunCohortGeneration.R | 29 +++++++++++++++++++ 18 files changed, 152 insertions(+), 50 deletions(-)
More information about CohortGenerator at CRAN
Permanent link
Title: Automatic Database Normalisation for Data Frames
Description: Automatic normalisation of a data frame to third normal form, with
the intention of easing the process of data cleaning. (Usage to design your
actual database for you is not advised.)
Originally inspired by the 'AutoNormalize' library for 'Python' by 'Alteryx'
(<https://github.com/alteryx/autonormalize>), with various changes and
improvements. Automatic discovery of functional or approximate dependencies,
normalisation based on those, and plotting of the resulting "database" via
'Graphviz', with options to exclude some attributes at discovery time, or
remove discovered dependencies at normalisation time.
Author: Mark Webster [aut, cre]
Maintainer: Mark Webster <markwebster204@yahoo.co.uk>
Diff between autodb versions 3.1.0 dated 2025-09-18 and 3.2.4 dated 2025-11-17
DESCRIPTION | 10 MD5 | 67 NAMESPACE | 6 NEWS.md | 24 R/database.r | 25 R/database_schema.r | 13 R/partition_handler.r | 2 R/plot.r | 653 ++++-- R/reference.r | 36 R/synthesise.r | 2 build/vignette.rds |binary inst/WORDLIST | 9 inst/doc/autodb.R | 606 ----- inst/doc/autodb.Rmd | 1089 +--------- inst/doc/autodb.html | 2967 +++------------------------- inst/doc/limits.R |only inst/doc/limits.Rmd |only inst/doc/limits.html |only inst/doc/nudge.R |only inst/doc/nudge.Rmd |only inst/doc/nudge.html |only inst/doc/null.R |only inst/doc/null.Rmd |only inst/doc/null.html |only inst/doc/plans.R |only inst/doc/plans.Rmd |only inst/doc/plans.html |only man/d2.Rd | 7 man/d2.database.Rd |only man/d2.database_schema.Rd |only man/d2.relation.Rd |only tests/testthat/helper.r | 19 tests/testthat/setup.r | 5 tests/testthat/test-database.r | 26 tests/testthat/test-database_schema.r | 24 tests/testthat/test-functional_dependency.r | 11 tests/testthat/test-plot.r | 831 +++++++ tests/testthat/test-relation.r | 11 tests/testthat/test-relation_schema.r | 13 vignettes/autodb.Rmd | 1089 +--------- vignettes/limits.Rmd |only vignettes/nudge.Rmd |only vignettes/null.Rmd |only vignettes/plans.Rmd |only 44 files changed, 2200 insertions(+), 5345 deletions(-)
Title: Automated and Early Detection of Seasonal Epidemic Onset and
Burden Levels
Description: A powerful tool for automating the early detection of seasonal epidemic
onsets in time series data. It offers the ability to estimate growth rates
across consecutive time intervals, calculate the sum of cases (SoC) within
those intervals, and estimate seasonal onsets within user defined seasons.
With use of a disease-specific threshold it also offers the possibility to
estimate seasonal onset of epidemics.
Additionally it offers the ability to estimate burden levels for seasons
based on historical data. It is aimed towards epidemiologists,
public health professionals, and researchers seeking to identify and respond
to seasonal epidemics in a timely fashion.
Author: Sofia Myrup Otero [aut] ,
Kasper Schou Telkamp [aut] ,
Lasse Engbo Christiansen [aut, cre] ,
Rasmus Skytte Randloev [rev] ,
Statens Serum Institut, SSI [cph, fnd]
Maintainer: Lasse Engbo Christiansen <lsec@ssi.dk>
Diff between aedseo versions 0.3.0 dated 2025-04-09 and 1.0.0 dated 2025-11-17
aedseo-0.3.0/aedseo/man/aedseo.Rd |only aedseo-0.3.0/aedseo/man/tsd.Rd |only aedseo-1.0.0/aedseo/DESCRIPTION | 19 aedseo-1.0.0/aedseo/MD5 | 122 ++--- aedseo-1.0.0/aedseo/NAMESPACE | 3 aedseo-1.0.0/aedseo/NEWS.md | 226 +++++----- aedseo-1.0.0/aedseo/R/0_documentation.R | 80 +-- aedseo-1.0.0/aedseo/R/autoplot.R | 68 ++- aedseo-1.0.0/aedseo/R/combined_seasonal_output.R | 165 ++++++- aedseo-1.0.0/aedseo/R/consecutive_growth_warnings.R | 5 aedseo-1.0.0/aedseo/R/estimate_disease_threshold.R |only aedseo-1.0.0/aedseo/R/fit_growth_rate.R | 86 ++- aedseo-1.0.0/aedseo/R/fit_percentiles.R | 32 + aedseo-1.0.0/aedseo/R/generate_seasonal_data.R | 20 aedseo-1.0.0/aedseo/R/historical_summary.R | 34 + aedseo-1.0.0/aedseo/R/predict.R | 24 - aedseo-1.0.0/aedseo/R/seasonal_burden_levels.R | 46 +- aedseo-1.0.0/aedseo/R/seasonal_onset.R | 173 ++++--- aedseo-1.0.0/aedseo/R/summary.R | 99 ++-- aedseo-1.0.0/aedseo/R/to_time_series.R | 123 +++-- aedseo-1.0.0/aedseo/README.md | 16 aedseo-1.0.0/aedseo/build/vignette.rds |binary aedseo-1.0.0/aedseo/inst/doc/aedseo.R | 57 ++ aedseo-1.0.0/aedseo/inst/doc/aedseo.Rmd | 127 ++++- aedseo-1.0.0/aedseo/inst/doc/aedseo.html | 161 ++++--- aedseo-1.0.0/aedseo/inst/doc/burden_levels.R | 20 aedseo-1.0.0/aedseo/inst/doc/burden_levels.Rmd | 23 - aedseo-1.0.0/aedseo/inst/doc/burden_levels.html | 19 aedseo-1.0.0/aedseo/inst/doc/generate_seasonal_wave.R | 18 aedseo-1.0.0/aedseo/inst/doc/generate_seasonal_wave.Rmd | 18 aedseo-1.0.0/aedseo/inst/doc/generate_seasonal_wave.html | 36 - aedseo-1.0.0/aedseo/inst/doc/multiple_waves.R |only aedseo-1.0.0/aedseo/inst/doc/multiple_waves.Rmd |only aedseo-1.0.0/aedseo/inst/doc/multiple_waves.html |only aedseo-1.0.0/aedseo/inst/doc/seasonal_onset.R | 14 aedseo-1.0.0/aedseo/inst/doc/seasonal_onset.Rmd | 41 + aedseo-1.0.0/aedseo/inst/doc/seasonal_onset.html | 76 +-- aedseo-1.0.0/aedseo/man/aedseo-package.Rd | 1 aedseo-1.0.0/aedseo/man/autoplot.Rd | 9 aedseo-1.0.0/aedseo/man/combined_seasonal_output.Rd | 80 ++- aedseo-1.0.0/aedseo/man/consecutive_growth_warnings.Rd | 3 aedseo-1.0.0/aedseo/man/estimate_disease_threshold.Rd |only aedseo-1.0.0/aedseo/man/fit_growth_rate.Rd | 18 aedseo-1.0.0/aedseo/man/fit_percentiles.Rd | 11 aedseo-1.0.0/aedseo/man/generate_seasonal_data.Rd | 10 aedseo-1.0.0/aedseo/man/historical_summary.Rd | 1 aedseo-1.0.0/aedseo/man/predict.tsd_onset.Rd | 12 aedseo-1.0.0/aedseo/man/seasonal_burden_levels.Rd | 30 - aedseo-1.0.0/aedseo/man/seasonal_onset.Rd | 67 +- aedseo-1.0.0/aedseo/man/summary.tsd_onset.Rd | 1 aedseo-1.0.0/aedseo/man/to_time_series.Rd | 76 ++- aedseo-1.0.0/aedseo/tests/testthat/test-combined_seasonal_output.R | 134 +++++ aedseo-1.0.0/aedseo/tests/testthat/test-estimate_disease_threshold.R |only aedseo-1.0.0/aedseo/tests/testthat/test-fit_growth_rate.R | 4 aedseo-1.0.0/aedseo/tests/testthat/test-fit_percentiles.R | 10 aedseo-1.0.0/aedseo/tests/testthat/test-generate_seasonal_data.R | 46 +- aedseo-1.0.0/aedseo/tests/testthat/test-historical_summary.R | 54 ++ aedseo-1.0.0/aedseo/tests/testthat/test-plot.R |only aedseo-1.0.0/aedseo/tests/testthat/test-predict.R | 18 aedseo-1.0.0/aedseo/tests/testthat/test-seasonal_burden_levels.R | 83 +++ aedseo-1.0.0/aedseo/tests/testthat/test-seasonal_onset.R | 119 ++++- aedseo-1.0.0/aedseo/tests/testthat/test-to_time_series.R | 101 ++-- aedseo-1.0.0/aedseo/vignettes/aedseo.Rmd | 127 ++++- aedseo-1.0.0/aedseo/vignettes/burden_levels.Rmd | 23 - aedseo-1.0.0/aedseo/vignettes/generate_seasonal_wave.Rmd | 18 aedseo-1.0.0/aedseo/vignettes/multiple_waves.Rmd |only aedseo-1.0.0/aedseo/vignettes/seasonal_onset.Rmd | 41 + 67 files changed, 2069 insertions(+), 979 deletions(-)
More information about GeneralizedUmatrixGPU at CRAN
Permanent link
Title: Client for Delphi's 'Epidata' API
Description: The Delphi 'Epidata' API provides real-time access to
epidemiological surveillance data for influenza, 'COVID-19', and other
diseases for the USA at various geographical resolutions, both from
official government sources such as the Center for Disease Control
(CDC) and Google Trends and private partners such as Facebook and
Change 'Healthcare'. It is built and maintained by the Carnegie Mellon
University Delphi research group. To cite this API: David C. Farrow,
Logan C. Brooks, Aaron 'Rumack', Ryan J. 'Tibshirani', 'Roni'
'Rosenfeld' (2015). Delphi 'Epidata' API.
<https://github.com/cmu-delphi/delphi-epidata>.
Author: Logan Brooks [aut],
Dmitry Shemetov [aut],
Samuel Gratzl [aut],
David Weber [ctb, cre],
Nat DeFries [ctb],
Alex Reinhart [ctb],
Daniel J. McDonald [ctb],
Kean Ming Tan [ctb],
Will Townes [ctb],
George Haff [ctb],
Kathryn Mazaitis [ctb]
Maintainer: David Weber <davidweb@andrew.cmu.edu>
Diff between epidatr versions 1.2.1 dated 2025-03-20 and 1.2.2 dated 2025-11-17
DESCRIPTION | 16 - MD5 | 24 +- NEWS.md | 18 ++ R/endpoints.R | 324 ++++++++++++++++++++++---------------- R/epidatacall.R | 54 ++++-- R/model.R | 45 ++--- README.md | 4 inst/doc/signal-discovery.html | 4 man/covidcast_epidata.Rd | 4 man/fetch_args_list.Rd | 7 man/parse_api_week.Rd | 4 tests/testthat/test-epidatacall.R | 9 - tests/testthat/test-model.R | 6 13 files changed, 315 insertions(+), 204 deletions(-)
Title: Semiparametric Likelihood Estimation with Errors in Variables
Description: Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Author: Sarah Lotspeich [aut],
Ran Tao [aut, cre],
Joey Sherrill [prg],
Jiangmei Xiong [ctb]
Maintainer: Ran Tao <r.tao@vanderbilt.edu>
Diff between sleev versions 1.1.5 dated 2025-09-11 and 1.1.6 dated 2025-11-17
sleev-1.1.5/sleev/tests/testthat.R |only sleev-1.1.6/sleev/DESCRIPTION | 7 sleev-1.1.6/sleev/MD5 | 13 - sleev-1.1.6/sleev/NAMESPACE | 8 sleev-1.1.6/sleev/R/logistic2ph.R | 132 ++++++++++++---- sleev-1.1.6/sleev/build/vignette.rds |binary sleev-1.1.6/sleev/inst/doc/sleev_vignette_file.pdf |binary sleev-1.1.6/sleev/tests/testthat/helper-001-functions.R |only sleev-1.1.6/sleev/tests/testthat/test-001-logistic2ph.R |only 9 files changed, 123 insertions(+), 37 deletions(-)
Title: 'tidyverse' Methods for 'Earth Engine'
Description: Provides 'tidyverse' methods for wrangling
and analyzing 'Earth Engine' <https://earthengine.google.com/> data. These methods help the user with filtering,
joining and summarising 'Earth Engine' image collections.
Author: Zack Arno [aut, cre, cph],
Josh Erickson [aut, cph]
Maintainer: Zack Arno <zackarno@gmail.com>
Diff between tidyrgee versions 0.1.0 dated 2022-09-15 and 0.1.1 dated 2025-11-17
DESCRIPTION | 12 LICENSE | 4 MD5 | 117 +-- NAMESPACE | 169 ++--- NEWS.md | 7 R/add_date_to_bandname.R | 106 +-- R/as_ee.R | 58 - R/as_tidyee.R | 160 ++-- R/bgd_msna.R | 56 - R/bind.R | 84 +- R/clip.R | 328 ++++----- R/ee_extract_tidy.R | 626 +++++++++--------- R/ee_temporal_composites.R | 958 ++++++++++++++--------------- R/filter-helpers.R | 138 ++-- R/filter.R | 144 ++-- R/filter_bounds.R | 262 +++---- R/group_by.R | 104 +-- R/group_split.R | 184 ++--- R/inner_join.R | 156 ++-- R/mutate.R | 74 +- R/print.R | 64 - R/select.R | 132 +-- R/set_idx.R | 136 ++-- R/slice.R | 122 +-- R/summarise.R | 306 ++++----- R/ungroup.R | 34 - R/utils.R | 498 +++++++-------- README.md | 772 +++++++++++------------ inst/WORDLIST | 108 +-- man/add_date_to_bandname.Rd | 34 - man/as_ee.Rd | 62 - man/as_tidyee.Rd | 64 - man/bgd_msna.Rd | 74 +- man/bind_ics.Rd | 62 - man/clip.Rd | 156 ++-- man/create_tidyee.Rd | 38 - man/ee_composite.Rd | 50 - man/ee_extract_tidy.Rd | 150 ++-- man/ee_month_composite.Rd | 60 - man/ee_month_filter.Rd | 42 - man/ee_year_composite.Rd | 60 - man/ee_year_filter.Rd | 42 - man/ee_year_month_composite.Rd | 68 +- man/ee_year_month_filter.Rd | 46 - man/filter.Rd | 78 +- man/filter_bounds.Rd | 130 +-- man/group_by.Rd | 82 +- man/group_split.Rd | 82 +- man/ic_list_to_ic.Rd |only man/inner_join.Rd | 42 - man/mutate.Rd | 56 - man/print.tidyee.Rd | 38 - man/select.Rd | 74 +- man/slice.Rd | 78 +- man/summarise.Rd | 92 +- man/ungroup.Rd | 38 - tests/testthat.R | 128 +-- tests/testthat/test-filter.R | 422 ++++++------ tests/testthat/test-summarise.R | 124 +-- tests/testthat/test-year_month_composite.R | 66 - 60 files changed, 4237 insertions(+), 4220 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.1-4 dated 2025-09-02 and 1.1-5 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- build/partial.rdb |binary build/vignette.rds |binary data/geyser.rda |binary data/mammoexp.rda |binary inst/doc/blood_loss_report.R | 7 ------- inst/doc/blood_loss_report.Rnw | 30 ++++++++++++++++++------------ inst/doc/blood_loss_report.pdf |binary inst/rda/aquabirds.rda |only vignettes/blood_loss_report.Rnw | 30 ++++++++++++++++++------------ 11 files changed, 50 insertions(+), 44 deletions(-)
Title: Causal Mediation Analysis Using Weighting Approach
Description: We implement causal mediation analysis using the methods proposed by Hong (2010) and Hong, Deutsch & Hill (2015) <doi:10.3102/1076998615583902>. It allows the estimation and hypothesis testing of causal mediation effects through ratio of mediator probability weights (RMPW). This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. We also implement a sensitivity analysis by extending the RMPW method to assess potential bias in the presence of omitted pretreatment or posttreatment covariates. The sensitivity analysis strategy was proposed by Hong, Qin, and Yang (2018) <doi:10.3102/1076998617749561>.
Author: Xu Qin [aut, cre],
Guanglei Hong [aut],
Fan Yang [aut]
Maintainer: Xu Qin <xuqin@uchicago.edu>
Diff between rmpw versions 0.0.5 dated 2024-03-05 and 0.0.6 dated 2025-11-17
DESCRIPTION | 24 ++++++--- MD5 | 6 +- R/rmpw.R | 139 ++++++++++++++++++++---------------------------------- build/partial.rdb |binary 4 files changed, 75 insertions(+), 94 deletions(-)
Title: Markov Model for Online Multi-Channel Attribution
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare [cre, aut],
David Loris [aut]
Maintainer: Davide Altomare <info@channelattribution.io>
Diff between ChannelAttribution versions 2.2.2 dated 2025-11-02 and 2.2.3 dated 2025-11-17
DESCRIPTION | 8 +++--- MD5 | 6 ++--- R/ChannelAttribution.R | 45 +++++++++++++++++++++++++++++--------- man/ChannelAttribution-package.Rd | 4 +-- 4 files changed, 44 insertions(+), 19 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Multilevel Propensity Score Analysis
Description: Conducts and visualizes propensity score analysis for
multilevel, or clustered data. Bryer & Pruzek (2011)
<doi:10.1080/00273171.2011.636693>.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between multilevelPSA versions 1.3.0 dated 2025-04-04 and 1.3.1 dated 2025-11-17
multilevelPSA-1.3.0/multilevelPSA/R/psrange.r |only multilevelPSA-1.3.1/multilevelPSA/DESCRIPTION | 12 ++-- multilevelPSA-1.3.1/multilevelPSA/MD5 | 24 +++++--- multilevelPSA-1.3.1/multilevelPSA/NEWS.md | 7 ++ multilevelPSA-1.3.1/multilevelPSA/R/plot.balance.R | 2 multilevelPSA-1.3.1/multilevelPSA/R/psrange.R |only multilevelPSA-1.3.1/multilevelPSA/build/vignette.rds |binary multilevelPSA-1.3.1/multilevelPSA/inst/doc/multilevelPSA.html | 27 ++++++++-- multilevelPSA-1.3.1/multilevelPSA/inst/doc/shrinking_fitted_values.R |only multilevelPSA-1.3.1/multilevelPSA/inst/doc/shrinking_fitted_values.Rmd |only multilevelPSA-1.3.1/multilevelPSA/inst/doc/shrinking_fitted_values.html |only multilevelPSA-1.3.1/multilevelPSA/man/plot.psrange.Rd | 7 +- multilevelPSA-1.3.1/multilevelPSA/man/print.psrange.Rd | 2 multilevelPSA-1.3.1/multilevelPSA/man/psrange.Rd | 2 multilevelPSA-1.3.1/multilevelPSA/man/summary.psrange.Rd | 2 multilevelPSA-1.3.1/multilevelPSA/vignettes/shrinking_fitted_values.Rmd |only 16 files changed, 59 insertions(+), 26 deletions(-)
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements methods which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
An accompanying 'Python' wrapper ('shaprpy') is available through the GitHub repository.
Author: Martin Jullum [cre, aut] ,
Lars Henry Berge Olsen [aut] ,
Annabelle Redelmeier [aut],
Jon Lachmann [aut] ,
Nikolai Sellereite [aut] ,
Anders Loeland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjaerde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
Diff between shapr versions 1.0.5 dated 2025-08-25 and 1.0.6 dated 2025-11-17
DESCRIPTION | 10 MD5 | 223 - NEWS.md | 93 R/approach_regression_separate.R | 2 R/approach_vaeac.R | 10 R/asymmetric_and_causal_Shapley.R | 2 R/check_convergence.R | 2 R/cli.R | 8 R/compute_estimates.R | 4 R/compute_vS.R | 4 R/explain.R | 4 R/explain_forecast.R | 2 R/finalize_explanation.R | 2 R/get_results.R | 10 R/model.R | 2 R/plot.R | 150 R/prepare_next_iteration.R | 2 R/print.R | 2 R/save_results.R | 2 R/setup.R | 10 R/shapley_setup.R | 4 R/summary.R | 13 R/timing.R | 2 inst/doc/asymmetric_causal.Rmd | 969 ++--- inst/doc/asymmetric_causal.html | 1534 ++++--- inst/doc/general_usage.Rmd | 1247 +++--- inst/doc/general_usage.html | 1206 +++--- inst/doc/regression.Rmd | 1896 ++++----- inst/doc/regression.html | 1919 +++++----- inst/doc/vaeac.Rmd | 602 +-- inst/doc/vaeac.html | 619 +-- man/additional_regression_setup.Rd | 4 man/append_vS_list.Rd | 4 man/check_convergence.Rd | 4 man/cli_compute_vS.Rd | 4 man/cli_iter.Rd | 4 man/cli_startup.Rd | 4 man/compute_estimates.Rd | 4 man/compute_shapley.Rd | 4 man/compute_time.Rd | 4 man/compute_vS.Rd | 4 man/explain.Rd | 2 man/explain_forecast.Rd | 2 man/finalize_explanation.Rd | 4 man/format_round.Rd | 44 man/get_extra_comp_args_default.Rd | 4 man/get_output_args_default.Rd | 4 man/get_results.Rd | 11 man/get_supported_approaches.Rd | 4 man/get_supported_models.Rd | 4 man/plot.shapr.Rd | 21 man/plot_MSEv_eval_crit.Rd | 4 man/plot_SV_several_approaches.Rd | 21 man/prepare_data_causal.Rd | 2 man/prepare_next_iteration.Rd | 4 man/print.shapr.Rd | 4 man/print_iter.Rd | 4 man/regression.train_model.Rd | 2 man/round_manual.Rd | 44 man/save_results.Rd | 4 man/setup.Rd | 4 man/shapley_setup.Rd | 4 man/summary.shapr.Rd | 4 man/testing_cleanup.Rd | 4 man/vaeac_get_evaluation_criteria.Rd | 4 man/vaeac_get_extra_para_default.Rd | 2 man/vaeac_impute_missing_entries.Rd | 4 man/vaeac_train_model.Rd | 2 man/vaeac_train_model_continue.Rd | 2 man/weight_matrix.Rd | 4 vignettes/asymmetric_causal.Rmd | 969 ++--- vignettes/figure_asymmetric_causal/explanation_asym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_mar_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/group_cor-1.webp |binary vignettes/figure_asymmetric_causal/group_gaussian_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_SV-2.webp |only vignettes/figure_asymmetric_causal/n_coalitions_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/scatter_plots-1.webp |binary vignettes/figure_asymmetric_causal/setup_2-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_1-1.webp |binary vignettes/figure_general_usage/combined-1-1.webp |binary vignettes/figure_general_usage/custom-1.webp |binary vignettes/figure_general_usage/custom-2.webp |binary vignettes/figure_general_usage/factor-1.webp |binary vignettes/figure_general_usage/group-1.webp |binary vignettes/figure_general_usage/plot-beeswarm-1.webp |binary vignettes/figure_general_usage/plot-scatter-1.webp |binary vignettes/figure_general_usage/plot-waterfall-1.webp |binary vignettes/figure_general_usage/setup-2-1.webp |binary vignettes/figure_regression/MSEv-sum-1.webp |binary vignettes/figure_regression/MSEv-sum-2-1.webp |binary vignettes/figure_regression/SV-sum-1.webp |binary vignettes/figure_regression/SV-sum-2.webp |binary vignettes/figure_regression/SV-sum-3.webp |binary vignettes/figure_regression/dt-cv-plot-1.webp |binary vignettes/figure_regression/mixed-plot-1.webp |binary vignettes/figure_regression/mixed-plot-2-1.webp |binary vignettes/figure_regression/mixed-plot-3-1.webp |binary vignettes/figure_regression/mixed-plot-4-1.webp |binary vignettes/figure_regression/ppr-plot-1.webp |binary vignettes/figure_regression/surrogate-plot-1.webp |binary vignettes/figure_vaeac/continue-training-2.webp |binary vignettes/figure_vaeac/continue-training-5.webp |binary vignettes/figure_vaeac/first-vaeac-plots-1.webp |binary vignettes/figure_vaeac/vaeac-grouping-of-features-1.webp |binary vignettes/figure_vaeac/vaeac-mixed-data-2.webp |binary vignettes/figure_vaeac/vaeac-mixed-data-3.webp |binary vignettes/general_usage.Rmd | 1247 +++--- vignettes/regression.Rmd | 1896 ++++----- vignettes/vaeac.Rmd | 602 +-- 113 files changed, 7831 insertions(+), 7701 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Jeff Goldsmith [aut],
Fabian Scheipl [aut],
Lei Huang [aut],
Julia Wrobel [aut, cre],
Chongzhi Di [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Philip T. [...truncated...]
Maintainer: Julia Wrobel <julia.wrobel@emory.edu>
Diff between refund versions 0.1-37 dated 2024-09-20 and 0.1-38 dated 2025-11-17
DESCRIPTION | 10 - MD5 | 22 +-- NAMESPACE | 2 R/fgam.R | 4 R/pffr-methods.R | 14 +- R/pffr-robust.R | 277 +++++++++++++++++++++++++++----------------------- R/pffr.R | 142 ++++++++++++------------- R/pfr.R | 4 R/plot.pfr.R | 5 man/coefboot.pffr.Rd | 2 man/pfr_plot.gam.Rd | 33 ----- man/residuals.pffr.Rd | 8 + 12 files changed, 259 insertions(+), 264 deletions(-)
Title: Evolutionary Algorithm
Description: Runs an evolutionary algorithm using the 'AlphaSimR' machinery <doi:10.1093/g3journal/jkaa017> .
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between evola versions 1.0.6 dated 2025-07-30 and 1.0.7 dated 2025-11-17
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Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 2.2 dated 2025-10-18 and 2.3 dated 2025-11-17
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 4 +--- R/ABregres.R | 2 +- R/ABrf2.R | 13 ++++++++++--- R/Aregres.R | 2 +- R/TauUabove.R | 16 ++++++++++++++-- R/TauUbelow.R | 18 +++++++++++++++++- 8 files changed, 56 insertions(+), 23 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and scientific computing. Includes functions for parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.2.0 dated 2025-10-05 and 0.3.1 dated 2025-11-17
DESCRIPTION | 11 + MD5 | 28 ++-- NEWS.md | 44 +++++++ R/add_pkg_file.R | 175 ++++++++++++++++++++++++++++- R/computation.R | 11 + R/figlet.R | 2 R/log_message.R | 122 ++++++++++++++++++++ R/parallelize_fun.R | 88 +++++++++++--- R/thisutils-package.R | 4 R/utils.R | 51 +++----- man/capitalize.Rd | 1 man/figlet.Rd | 2 man/log_message.Rd | 14 ++ src/matrix_to_table.cpp | 282 ++++++++++++++++++++++-------------------------- src/table_to_matrix.cpp | 2 15 files changed, 600 insertions(+), 237 deletions(-)
Title: Exploratory Web Apps for Analyzing Clinical Trials Data
Description: A 'shiny' based interactive exploration framework for
analyzing clinical trials data. 'teal' currently provides a dynamic
filtering facility and different data viewers. 'teal' 'shiny'
applications are built using standard 'shiny' modules.
Author: Dawid Kaledkowski [aut, cre] ,
Pawel Rucki [aut],
Aleksander Chlebowski [aut] ,
Andre Verissimo [aut] ,
Kartikeya Kirar [aut],
Vedha Viyash [aut],
Marcin Kosinski [aut],
Adrian Waddell [aut],
Dony Unardi [rev],
Nina Qi [rev],
Nikolas Burkoff [aut],
M [...truncated...]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal versions 1.0.0 dated 2025-08-20 and 1.1.0 dated 2025-11-17
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teal-1.1.0/teal/inst/doc/adding-support-for-reporting.html | 1413 -- teal-1.1.0/teal/inst/doc/bootstrap-themes-in-teal.R | 110 teal-1.1.0/teal/inst/doc/bootstrap-themes-in-teal.Rmd | 432 teal-1.1.0/teal/inst/doc/bootstrap-themes-in-teal.html | 1158 - teal-1.1.0/teal/inst/doc/creating-custom-modules.R | 243 teal-1.1.0/teal/inst/doc/creating-custom-modules.Rmd | 588 teal-1.1.0/teal/inst/doc/creating-custom-modules.html | 1448 +- teal-1.1.0/teal/inst/doc/data-as-shiny-module.R | 314 teal-1.1.0/teal/inst/doc/data-as-shiny-module.Rmd | 450 teal-1.1.0/teal/inst/doc/data-as-shiny-module.html | 1048 - teal-1.1.0/teal/inst/doc/filter-panel.R | 156 teal-1.1.0/teal/inst/doc/filter-panel.Rmd | 264 teal-1.1.0/teal/inst/doc/filter-panel.html | 974 - teal-1.1.0/teal/inst/doc/getting-started-with-teal.R | 64 teal-1.1.0/teal/inst/doc/getting-started-with-teal.Rmd | 332 teal-1.1.0/teal/inst/doc/getting-started-with-teal.html | 1122 - teal-1.1.0/teal/inst/doc/including-data-in-teal-applications.R | 234 teal-1.1.0/teal/inst/doc/including-data-in-teal-applications.Rmd | 534 teal-1.1.0/teal/inst/doc/including-data-in-teal-applications.html | 1336 +- teal-1.1.0/teal/inst/doc/teal-as-a-shiny-module.R | 86 teal-1.1.0/teal/inst/doc/teal-as-a-shiny-module.Rmd | 144 teal-1.1.0/teal/inst/doc/teal-as-a-shiny-module.html | 852 - teal-1.1.0/teal/inst/doc/teal-options.R | 18 teal-1.1.0/teal/inst/doc/teal-options.Rmd | 335 teal-1.1.0/teal/inst/doc/teal-options.html | 1169 - teal-1.1.0/teal/inst/doc/transform-input-data.R | 518 teal-1.1.0/teal/inst/doc/transform-input-data.Rmd | 666 - teal-1.1.0/teal/inst/doc/transform-input-data.html | 1314 - teal-1.1.0/teal/inst/doc/transform-module-output.R | 906 - teal-1.1.0/teal/inst/doc/transform-module-output.Rmd | 1210 - teal-1.1.0/teal/inst/doc/transform-module-output.html | 1932 +- teal-1.1.0/teal/inst/js/busy-disable.js | 16 teal-1.1.0/teal/inst/js/extendShinyJs.js |only teal-1.1.0/teal/inst/module-navigation/module-navigation.css | 387 teal-1.1.0/teal/man/TealAppDriver.Rd | 1267 - teal-1.1.0/teal/man/TealReportCard.Rd | 339 teal-1.1.0/teal/man/add_landing_modal.Rd | 108 teal-1.1.0/teal/man/after.Rd |only teal-1.1.0/teal/man/check_modules_datanames.Rd | 64 teal-1.1.0/teal/man/check_reactive.Rd | 112 teal-1.1.0/teal/man/decorate_err_msg.Rd | 44 teal-1.1.0/teal/man/disable_report.Rd |only teal-1.1.0/teal/man/disable_src.Rd |only teal-1.1.0/teal/man/dot-call_once_when.Rd | 88 teal-1.1.0/teal/man/dot-get_hashes_code.Rd | 40 teal-1.1.0/teal/man/dot-get_reporter_options.Rd | 34 teal-1.1.0/teal/man/dot-smart_rbind.Rd | 30 teal-1.1.0/teal/man/dot-teal_favicon.Rd | 32 teal-1.1.0/teal/man/example_module.Rd | 136 teal-1.1.0/teal/man/extract_transformators.Rd | 36 teal-1.1.0/teal/man/figures/logo.svg | 460 teal-1.1.0/teal/man/init.Rd | 231 teal-1.1.0/teal/man/make_teal_transform_server.Rd | 110 teal-1.1.0/teal/man/module_bookmark_manager.Rd | 134 teal-1.1.0/teal/man/module_data_summary.Rd | 114 teal-1.1.0/teal/man/module_filter_data.Rd | 106 teal-1.1.0/teal/man/module_init_data.Rd | 102 teal-1.1.0/teal/man/module_session_info.Rd | 94 teal-1.1.0/teal/man/module_teal.Rd | 128 teal-1.1.0/teal/man/module_teal_lockfile.Rd | 118 teal-1.1.0/teal/man/module_teal_module.Rd | 334 teal-1.1.0/teal/man/module_transform_data.Rd | 84 teal-1.1.0/teal/man/module_validate_error.Rd |only teal-1.1.0/teal/man/modules_slot.Rd | 42 teal-1.1.0/teal/man/pluralize.Rd | 46 teal-1.1.0/teal/man/reporter_previewer_module.Rd | 62 teal-1.1.0/teal/man/teal-package.Rd | 110 teal-1.1.0/teal/man/teal_data_module.Rd | 223 teal-1.1.0/teal/man/teal_data_to_filtered_data.Rd | 40 teal-1.1.0/teal/man/teal_data_utilities.Rd | 73 teal-1.1.0/teal/man/teal_extend_server.Rd | 40 teal-1.1.0/teal/man/teal_modifiers.Rd | 158 teal-1.1.0/teal/man/teal_modules.Rd | 699 - teal-1.1.0/teal/man/teal_slices.Rd | 256 teal-1.1.0/teal/man/teal_transform_module.Rd | 294 teal-1.1.0/teal/man/validate_has_data.Rd | 130 teal-1.1.0/teal/man/validate_has_elements.Rd | 118 teal-1.1.0/teal/man/validate_has_variable.Rd | 106 teal-1.1.0/teal/man/validate_in.Rd | 102 teal-1.1.0/teal/man/validate_inputs.Rd | 254 teal-1.1.0/teal/man/validate_n_levels.Rd | 134 teal-1.1.0/teal/man/validate_no_intersection.Rd | 132 teal-1.1.0/teal/man/validate_one_row_per_id.Rd | 102 teal-1.1.0/teal/tests/testthat.R | 10 teal-1.1.0/teal/tests/testthat/_snaps/linux-4.5/shinytest2-init/teal-001.png |binary teal-1.1.0/teal/tests/testthat/_snaps/windows-4.5 |only teal-1.1.0/teal/tests/testthat/helper-shinytest2.R | 44 teal-1.1.0/teal/tests/testthat/helper-testing_depth.R | 98 teal-1.1.0/teal/tests/testthat/test-init.R | 411 teal-1.1.0/teal/tests/testthat/test-module_session_info.R | 90 teal-1.1.0/teal/tests/testthat/test-module_teal.R | 6653 +++++----- teal-1.1.0/teal/tests/testthat/test-module_teal_data.R |only teal-1.1.0/teal/tests/testthat/test-modules.R | 800 - teal-1.1.0/teal/tests/testthat/test-reporter_previewer_module.R |only teal-1.1.0/teal/tests/testthat/test-shinytest2-data_summary.R | 292 teal-1.1.0/teal/tests/testthat/test-shinytest2-decorators.R | 237 teal-1.1.0/teal/tests/testthat/test-shinytest2-disable_report.R |only teal-1.1.0/teal/tests/testthat/test-shinytest2-disable_src.R |only teal-1.1.0/teal/tests/testthat/test-shinytest2-filter_manager.R | 28 teal-1.1.0/teal/tests/testthat/test-shinytest2-filter_panel.R | 226 teal-1.1.0/teal/tests/testthat/test-shinytest2-init.R | 213 teal-1.1.0/teal/tests/testthat/test-shinytest2-module_bookmark_manager.R | 114 teal-1.1.0/teal/tests/testthat/test-shinytest2-modules.R | 220 teal-1.1.0/teal/tests/testthat/test-shinytest2-reporter.R | 144 teal-1.1.0/teal/tests/testthat/test-shinytest2-show-rcode.R | 151 teal-1.1.0/teal/tests/testthat/test-shinytest2-snapshot_manager.R | 24 teal-1.1.0/teal/tests/testthat/test-shinytest2-teal_data_module.R | 460 teal-1.1.0/teal/tests/testthat/test-shinytest2-teal_modifiers.R |only teal-1.1.0/teal/tests/testthat/test-shinytest2-teal_slices.R | 230 teal-1.1.0/teal/tests/testthat/test-teal_data_module-eval_code.R | 432 teal-1.1.0/teal/tests/testthat/test-teal_data_module.R | 48 teal-1.1.0/teal/tests/testthat/test-teal_modifiers.R |only teal-1.1.0/teal/tests/testthat/test-teal_reporter.R | 194 teal-1.1.0/teal/tests/testthat/test-teal_slices.R | 322 teal-1.1.0/teal/tests/testthat/test-teal_transform_module.R | 160 teal-1.1.0/teal/tests/testthat/test-utils.R | 356 teal-1.1.0/teal/tests/testthat/test-validations.R |only teal-1.1.0/teal/tests/testthat/test-zzz.R |only teal-1.1.0/teal/vignettes/adding-support-for-reporting.Rmd | 812 - teal-1.1.0/teal/vignettes/blueprint/filter_panel.Rmd | 148 teal-1.1.0/teal/vignettes/blueprint/input_data.Rmd | 130 teal-1.1.0/teal/vignettes/blueprint/intro.Rmd | 74 teal-1.1.0/teal/vignettes/blueprint/module_encapsulation.Rmd | 60 teal-1.1.0/teal/vignettes/bootstrap-themes-in-teal.Rmd | 432 teal-1.1.0/teal/vignettes/creating-custom-modules.Rmd | 588 teal-1.1.0/teal/vignettes/data-as-shiny-module.Rmd | 450 teal-1.1.0/teal/vignettes/filter-panel.Rmd | 264 teal-1.1.0/teal/vignettes/getting-started-with-teal.Rmd | 332 teal-1.1.0/teal/vignettes/images/custom_module_without_reporter.png |only teal-1.1.0/teal/vignettes/including-data-in-teal-applications.Rmd | 534 teal-1.1.0/teal/vignettes/teal-as-a-shiny-module.Rmd | 144 teal-1.1.0/teal/vignettes/teal-options.Rmd | 335 teal-1.1.0/teal/vignettes/transform-input-data.Rmd | 666 - teal-1.1.0/teal/vignettes/transform-module-output.Rmd | 1210 - 197 files changed, 33047 insertions(+), 32243 deletions(-)
Title: Benchmark for Publication Bias Correction Methods
Description: Implements a unified interface for benchmarking meta-analytic
publication bias correction methods through simulation studies (see
Bartoš et al., 2025, <doi:10.48550/arXiv.2510.19489>). It provides
1) predefined data-generating mechanisms from the literature, 2) functions
for running meta-analytic methods on simulated data, 3) pre-simulated
datasets and pre-computed results for reproducible benchmarks, 4) tools for
visualizing and comparing method performance.
Author: Frantisek Bartos [aut, cre] ,
Samuel Pawel [aut] ,
Bjoern S. Siepe [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between PublicationBiasBenchmark versions 0.1.0 dated 2025-11-05 and 0.1.1 dated 2025-11-17
DESCRIPTION | 8 +- MD5 | 64 +++++++++--------- NEWS.md | 7 +- R/dgm-Carter2019.R | 6 - R/download.R | 22 ++---- R/measures_compute.R | 4 - R/measures_pairwise.R | 8 -- R/method.R | 8 ++ R/upload.R | 4 - R/utilities.R | 20 ++++- README.md | 27 +++++++- build/partial.rdb |binary inst/CITATION | 4 - man/PublicationBiasBenchmark-package.Rd | 2 man/create_empty_result.Rd | 42 ++++++------ man/download_dgm.Rd | 4 - man/method.AK.Rd | 108 ++++++++++++++++---------------- man/method.EK.Rd | 90 +++++++++++++------------- man/method.FMA.Rd | 90 +++++++++++++------------- man/method.PEESE.Rd | 80 +++++++++++------------ man/method.PET.Rd | 80 +++++++++++------------ man/method.PETPEESE.Rd | 98 ++++++++++++++--------------- man/method.RMA.Rd | 98 ++++++++++++++--------------- man/method.WAAPWLS.Rd | 82 ++++++++++++------------ man/method.WILS.Rd | 100 ++++++++++++++--------------- man/method.WLS.Rd | 78 +++++++++++------------ man/method.pcurve.Rd | 98 ++++++++++++++--------------- man/method.puniform.Rd | 96 ++++++++++++++-------------- man/method.trimfill.Rd | 92 +++++++++++++-------------- man/method_extra_columns.Rd | 78 ++++++++++++----------- man/method_settings.Rd | 58 ++++++++--------- man/retrieve_dgm_dataset.Rd | 2 man/validate_dgm_setting.Rd | 72 ++++++++++----------- 33 files changed, 832 insertions(+), 798 deletions(-)
More information about PublicationBiasBenchmark at CRAN
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Title: Sensitivities of Prices of Financial Options and Implied
Volatilities
Description: Methods to calculate sensitivities of financial option prices for
European, geometric and arithmetic Asian, and American options, with various
payoff functions in the Black Scholes model, and in more general jump diffusion
models. A shiny app to interactively plot the results is included. Furthermore,
methods to compute implied volatilities are provided for a wide range of option
types and custom payoff functions. Classical formulas are implemented for
European options in the Black Scholes Model, as is presented in Hull, J. C.
(2017), Options, Futures, and Other Derivatives.
In the case of Asian options, Malliavin Monte Carlo Greeks are implemented, see
Hudde, A. & Rüschendorf, L. (2023). European and Asian Greeks for exponential
Lévy processes. <doi:10.1007/s11009-023-10014-5>. For American
options, the Binomial Tree Method is implemented, as is presented in Hull,
J. C. (2017).
Author: Anselm Hudde [aut, cre]
Maintainer: Anselm Hudde <anselmhudde@gmx.de>
Diff between greeks versions 1.4.4 dated 2025-03-02 and 1.5.1 dated 2025-11-17
DESCRIPTION | 11 MD5 | 70 - NEWS.md | 184 +- R/BS_Geometric_Asian_Greeks.R | 560 ++++---- R/BS_Malliavin_Asian_Greeks.R | 534 ++++---- R/Binomial_American_Greeks.R | 15 R/Greeks_UI.R | 1098 ++++++++--------- R/Malliavin_European_Greeks.R | 4 R/Malliavin_Geometric_Asian_Greeks.R | 442 +++--- R/RcppExports.R | 94 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/using_greeks.R | 12 inst/doc/using_greeks.Rmd | 192 +- inst/doc/using_greeks.html | 674 +++++----- man/BS_Geometric_Asian_Greeks.Rd | 154 +- man/BS_Implied_Volatility.Rd | 154 +- man/Binomial_American_Greeks.Rd | 173 +- man/Greeks.Rd | 410 +++--- man/Greeks_UI.Rd | 48 man/Implied_Volatility.Rd | 172 +- man/Malliavin_Asian_Greeks.Rd | 248 +-- man/Malliavin_European_Greeks.Rd | 184 +- man/Malliavin_Geometric_Asian_Greeks.Rd | 248 +-- man/pipe.Rd | 40 src/Makevars | 1 tests/testthat/test-BS_European_Greeks.R | 218 +-- tests/testthat/test-BS_Geometric_Asian_Greeks.R | 167 +- tests/testthat/test-BS_Malliavin_Asian_Greeks.R | 304 ++-- tests/testthat/test-Binomial_American_Greeks.R | 440 +++--- tests/testthat/test-Greeks.R | 64 tests/testthat/test-Implied_Volatility.R | 191 +- tests/testthat/test-Malliavin_Asian_Greeks.R | 444 +++--- tests/testthat/test-Malliavin_European_Greeks.R | 154 +- tests/testthat/test-Malliavin_Geometric_Asian_Greeks.R | 292 ++-- vignettes/using_greeks.Rmd | 192 +- 36 files changed, 4087 insertions(+), 4101 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.11.1 dated 2025-06-26 and 1.11.3 dated 2025-11-17
DESCRIPTION | 8 MD5 | 62 ++--- NEWS.md | 7 R/display_DVH.R | 1 R/display_dV_dx.R | 1 R/espadon_hidden.R | 2 R/get_volume_from_bin.R | 1 R/get_volume_from_roi.R | 1 R/histo_vol.R | 1 R/rt_chi_index.R | 1 R/rt_gamma_index.R | 1 R/rt_indices_from_roi.R | 1 R/sp_similarity_from_bin.R | 1 R/sp_similarity_from_mesh.R | 1 R/struct_clustering.R | 1 build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 473 ++++++++++++++++++++--------------------- inst/doc/espadon_overview.html | 47 ++-- man/display.DVH.Rd | 3 man/display.dV_dx.Rd | 3 man/get.volume.from.bin.Rd | 3 man/get.volume.from.roi.Rd | 3 man/histo.vol.Rd | 3 man/rt.chi.index.Rd | 3 man/rt.gamma.index.Rd | 3 man/rt.indices.from.roi.Rd | 3 man/sp.similarity.from.bin.Rd | 3 man/sp.similarity.from.mesh.Rd | 3 man/struct.clustering.Rd | 3 src/dicombrowser.cpp | 372 -------------------------------- 32 files changed, 316 insertions(+), 699 deletions(-)
Title: A 'shiny' App to Evaluate Diagnostic Tests Performance
Description: Evaluate diagnostic test performance using data from laboratory or diagnostic research. It supports both binary and continuous test variables. It allows users to compute key performance indicators and visualize Receiver Operating Characteristic (ROC) curves, determine optimal cut-off thresholds, display confusion matrix, and export publication-ready plot. It aims to facilitate the application of statistical methods in diagnostic test evaluation by healthcare professionals. The methodology used to compute the performance indicators follows the overview described by Habibzadeh (2025) <doi:10.11613/BM.2025.010101>. Thanks to 'shiny' package.
Author: Nassim AYAD [aut, cre]
Maintainer: Nassim AYAD <nassim.ayad.ph@gmail.com>
Diff between EvalTest versions 1.0.3 dated 2025-10-15 and 1.0.5 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 28 +++++++++++++++++++++------- README.md | 11 ++++++++--- inst/app/app.R | 7 ++----- inst/doc/introduction.Rmd | 30 +++++++++++++++--------------- inst/doc/introduction.html | 38 +++++++++++++++++++------------------- vignettes/introduction.Rmd | 30 +++++++++++++++--------------- 8 files changed, 90 insertions(+), 74 deletions(-)
Title: Implementation of LT-FH++
Description: Implementation of LT-FH++, an extension of
the liability threshold family history (LT-FH) model.
LT-FH++ uses a Gibbs sampler for sampling from the truncated
multivariate normal distribution and allows for
flexible family structures. LT-FH++ was first described in
Pedersen, Emil M., et al. (2022)
<doi:10.1016/j.ajhg.2022.01.009>
as an extension to LT-FH with more flexible family structures,
and again as the age-dependent liability threshold (ADuLT) model
Pedersen, Emil M., et al. (2023)
<https://www.nature.com/articles/s41467-023-41210-z>
as an alternative to traditional time-to-event genome-wide
association studies, where family history was not considered.
Author: Emil Michael Pedersen [aut, cre],
Florian Prive [aut, ths],
Bjarni Johann Vilhjalmsson [ths],
Esben Agerbo [ths],
Jette Steinbach [aut],
Lucas Rasmussen [ctb]
Maintainer: Emil Michael Pedersen <emp@ph.au.dk>
Diff between LTFHPlus versions 2.1.4 dated 2025-05-26 and 2.2.0 dated 2025-11-17
DESCRIPTION | 13 +-- MD5 | 20 +++- NAMESPACE | 33 ++++++++ NEWS.md | 10 ++ R/Labelling_and_plotting_functions.R |only R/prepare_LTFHPlus_input.R | 143 +++++++++++++++++++++++++++++++++++ build/partial.rdb |binary man/LTFHPlus-package.Rd | 1 man/Relation_per_proband_plot.Rd |only man/attach_attributes.Rd |only man/familywise_attach_attributes.Rd |only man/get_family_graphs.Rd |only man/get_generations.Rd |only man/get_relations.Rd |only man/label_relatives.Rd |only 15 files changed, 208 insertions(+), 12 deletions(-)
Title: A Simple Sky Illuminance Model
Description: A tool to calculate sky illuminance values (in lux) for both sun and moon. The
model is a translation of the Fortran code by Janiczek and DeYoung (1987)
<https://archive.org/details/DTIC_ADA182110>.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between skylight versions 1.3 dated 2025-09-24 and 1.4 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/skylight.R | 9 +++------ build/vignette.rds |binary inst/doc/skylight.html | 4 ++-- inst/doc/skylight_advanced.html | 4 ++-- man/skylight.Rd | 7 +++---- tests/testthat/test_skylight.R | 5 ----- 8 files changed, 20 insertions(+), 29 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Tatiana Vargas [aut, cre],
Frederic Breant [ctb],
Victor Perrier [ctb],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
Assil Mansouri [ctb],
Abdallah Mahoud [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresEditObject versions 0.9.2 dated 2025-09-24 and 0.9.3 dated 2025-11-17
DESCRIPTION | 8 MD5 | 66 - NAMESPACE | 1 NEWS.md | 22 R/createBindingConstraint.R | 91 + R/createCluster.R | 113 +- R/createClusterST.R | 119 ++ R/createStudy.R | 9 R/editBindingConstraint.R | 46 R/editClusterST.R | 45 R/scenarioBuilder.R | 190 +++- R/updateGeneralSettings.R | 53 + build/vignette.rds |binary inst/doc/Antares_new_features_v920.R | 4 inst/doc/Antares_new_features_v920.Rmd | 4 inst/doc/Antares_new_features_v920.html | 1229 +------------------------- inst/doc/Antares_new_features_v930.R |only inst/doc/Antares_new_features_v930.Rmd |only inst/doc/Antares_new_features_v930.html |only inst/doc/api-variant-management.html | 2 man/createBindingConstraint.Rd | 2 man/createCluster.Rd | 8 man/createClusterST.Rd | 49 - man/editBindingConstraint.Rd | 2 man/editClusterST.Rd | 45 man/scenario-builder.Rd | 7 tests/testthat/test-createBindingConstraint.R | 182 +++ tests/testthat/test-createCluster.R | 92 + tests/testthat/test-createClusterST.R | 218 ++++ tests/testthat/test-createStudy.R | 27 tests/testthat/test-editBindingConstraint.R | 49 - tests/testthat/test-editClusterST.R | 238 +++++ tests/testthat/test-scenarioBuilder.R | 119 ++ tests/testthat/test-updateGeneralSettings.R | 49 + vignettes/Antares_new_features_v920.Rmd | 4 vignettes/Antares_new_features_v930.Rmd |only 36 files changed, 1727 insertions(+), 1366 deletions(-)
More information about antaresEditObject at CRAN
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Title: One-Dimensional Probability Distribution Support for the
'spatstat' Family
Description: Estimation of one-dimensional probability distributions
including kernel density estimation, weighted empirical cumulative
distribution functions, Kaplan-Meier and reduced-sample estimators
for right-censored data, heat kernels, kernel properties,
quantiles and integration.
Author: Adrian Baddeley [aut, cre, cph] ,
Tilman M. Davies [aut, ctb, cph] ,
Martin L. Hazelton [aut, ctb, cph] ,
Ege Rubak [aut, cph] ,
Rolf Turner [aut, cph] ,
Greg McSwiggan [ctb, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.univar versions 3.1-4 dated 2025-07-12 and 3.1-5 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- NEWS | 14 ++++++++++++++ R/ewcdf.R | 6 +++--- R/unnormdensity.R | 6 +++++- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/knots.ewcdf.Rd | 22 +++++++++++++++------- man/macros/defns.Rd | 5 ++++- man/spatstat.univar-internal.Rd | 2 -- man/unnormdensity.Rd | 3 +++ 12 files changed, 62 insertions(+), 30 deletions(-)
More information about spatstat.univar at CRAN
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Title: Tools to Support the Sheffield Elicitation Framework
Description: Implements various methods for eliciting a probability
distribution for a single parameter from an expert or a group of
experts. The expert provides a small number of probability judgements,
corresponding to points on his or her cumulative distribution
function. A range of parametric distributions can then be fitted and
displayed, with feedback provided in the form of fitted probabilities
and percentiles. For multiple experts, a weighted linear pool can be
calculated. Also includes functions for eliciting beliefs about
population distributions; eliciting multivariate distributions using a
Gaussian copula; eliciting a Dirichlet distribution; eliciting
distributions for variance parameters in a random effects
meta-analysis model; survival extrapolation. R Shiny apps for most of the methods are
included.
Author: Jeremy Oakley [aut, cre]
Maintainer: Jeremy Oakley <j.oakley@sheffield.ac.uk>
Diff between SHELF versions 1.12.0 dated 2025-03-01 and 1.12.1 dated 2025-11-17
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Title: Robust Time Series Filters
Description: Implementations for several robust procedures that allow for (online)
extraction of the signal of univariate or multivariate time series by
applying robust regression techniques to a moving time window are provided.
Included are univariate filtering procedures based on repeated-median
regression as well as hybrid and trimmed filters derived from it;
see Schettlinger et al. (2006) <doi:10.1515/BMT.2006.010>. The adaptive
online repeated median by Schettlinger et al. (2010) <doi:10.1002/acs.1105>
and the slope comparing adaptive repeated median by Borowski and Fried (2013)
<doi:10.1007/s11222-013-9391-7> choose the width of the moving time
window adaptively. Multivariate versions are also provided; see
Borowski et al. (2009) <doi:10.1080/03610910802514972> for a multivariate
online adaptive repeated median and Borowski (2012) <doi:10.17877/DE290R-14393>
for a multivariate slope comparing adaptive repeated median. Furthermore,
a repeated-median based filter w [...truncated...]
Author: Roland Fried [aut, cre],
Karen Schettlinger [aut],
Matthias Borowski [aut],
Robin Nunkesser [ctb],
Thorsten Bernholt [ctb]
Maintainer: Roland Fried <fried@statistik.tu-dortmund.de>
Diff between robfilter versions 4.1.5 dated 2024-07-16 and 4.1.6 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- build/partial.rdb |binary src/backports.h |only src/robust.cpp | 5 +++-- 5 files changed, 11 insertions(+), 9 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-19 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-18 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-23 0.1.0
2023-09-12 0.0.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-23 0.3.1
2024-06-04 0.3.0
2024-06-02 0.2.1
2024-01-28 0.2.0
2023-12-08 0.1.0
2023-09-13 0.0.4
Title: Parse XML
Description: Bindings to 'libxml2' for working with XML data using a simple,
consistent interface based on 'XPath' expressions. Also supports XML schema
validation; for 'XSLT' transformations see the 'xslt' package.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Jeroen Ooms [aut, cre],
Posit Software, PBC [cph, fnd],
R Foundation [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xml2 versions 1.4.1 dated 2025-10-27 and 1.5.0 dated 2025-11-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/init.R | 7 +++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/modification.html | 22 +++++++++++----------- src/xml2_init.c | 41 ++++++++++++++++++++++++++++++++++++++++- 8 files changed, 72 insertions(+), 22 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.67.0 dated 2025-07-29 and 1.68.0 dated 2025-11-17
DESCRIPTION | 8 - MD5 | 86 +++++++-------- NEWS.md | 54 ++++++++- R/backend_api-01-FutureBackend-class.R | 31 ++--- R/backend_api-11.ClusterFutureBackend-class.R | 9 + R/backend_api-11.SequentialFutureBackend-class.R | 11 -- R/backend_api-Future-class.R | 5 R/backend_api-UniprocessFuture-class.R | 6 - R/backend_api-evalFuture.R | 2 R/core_api-cancel.R | 6 - R/core_api-reset.R | 7 - R/core_api-resolved.R | 1 R/core_api-value.R | 36 +++--- R/protected_api-journal.R | 2 R/protected_api-resolve.R | 8 - R/protected_api-signalConditions.R | 6 - R/utils-basic.R | 7 + R/utils_api-capture_journals.R | 4 R/utils_api-makeClusterFuture.R | 11 +- R/utils_api-plan.R | 24 ++-- build/vignette.rds |binary inst/doc/future-1-overview.html | 87 ++++++++-------- inst/doc/future-1-overview.md.rsp | 83 +++++++-------- inst/doc/future-2-output.html | 4 inst/doc/future-2b-backend.html | 10 - inst/doc/future-2b-backend.md.rsp | 8 - inst/doc/future-3-topologies.html | 4 inst/doc/future-4-issues.html | 4 inst/doc/future-4-non-exportable-objects.html | 4 inst/doc/future-5-startup.html | 4 inst/doc/future-6-future-api-backend-specification.html | 2 inst/doc/future-7-for-package-developers.html | 4 inst/doc/future-8-how-future-is-validated.html | 2 inst/testme/_prologue/090.context.R | 2 inst/testme/test-cancel.R | 8 + inst/testme/test-mpi.R | 10 + inst/vignettes-static/future-1-overview.md.rsp.rsp | 2 man/cancel.Rd | 2 man/makeClusterFuture.Rd | 13 +- man/resolved.Rd | 1 man/result.Rd | 3 man/value.Rd | 6 - vignettes/future-1-overview.md.rsp | 83 +++++++-------- vignettes/future-2b-backend.md.rsp | 8 - 44 files changed, 375 insertions(+), 303 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.3.1 dated 2025-04-03 and 0.3.2 dated 2025-11-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/r_expr_addons.html | 13 +++++++------ inst/doc/shiny_customized_widgets.html | 5 +++-- inst/doc/utility_functions.html | 7 ++++--- src/utils.cpp | 20 +++++++++++++------- 8 files changed, 43 insertions(+), 29 deletions(-)