Title: Automatic Univariate Time Series Modelling of many Kinds
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
time series models of many kinds.
Harvey AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Gómez V, Maravall A (2000) <doi:10.1002/9781118032978>.
Pedregal DJ, Trapero JR and Holgado E (2024) <doi:10.1016/j.ijforecast.2023.09.004>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <diego.pedregal@uclm.es>
This is a re-admission after prior archival of version 5.1.4 dated 2025-10-22
Diff between UComp versions 5.1.4 dated 2025-10-22 and 5.1.5 dated 2025-11-18
UComp-5.1.4/UComp/man/fitted.Rd |only UComp-5.1.4/UComp/man/plot.ARIMA.Rd |only UComp-5.1.4/UComp/man/plot.Rd |only UComp-5.1.4/UComp/man/print.Rd |only UComp-5.1.4/UComp/man/residuals.Rd |only UComp-5.1.4/UComp/man/summary.ARIMA.Rd |only UComp-5.1.4/UComp/man/summary.ETS.Rd |only UComp-5.1.4/UComp/man/summary.TETS.Rd |only UComp-5.1.5/UComp/ChangeLog | 3 UComp-5.1.5/UComp/DESCRIPTION | 16 - UComp-5.1.5/UComp/MD5 | 175 +++++------ UComp-5.1.5/UComp/NAMESPACE | 3 UComp-5.1.5/UComp/R/ARIMAS3functions.R | 19 + UComp-5.1.5/UComp/R/ARIMAestim.R | 11 UComp-5.1.5/UComp/R/ARIMAmodel.R | 67 +++- UComp-5.1.5/UComp/R/ARIMAvalidate.R | 2 UComp-5.1.5/UComp/R/ETSS3functions.R | 29 + UComp-5.1.5/UComp/R/ETScomponents.R | 5 UComp-5.1.5/UComp/R/ETSestim.R | 2 UComp-5.1.5/UComp/R/ETSmodel.R | 103 ++++++ UComp-5.1.5/UComp/R/ETSvalidate.R | 4 UComp-5.1.5/UComp/R/TETSS3functions.R | 25 + UComp-5.1.5/UComp/R/TETScomponents.R | 5 UComp-5.1.5/UComp/R/TETSestim.R | 2 UComp-5.1.5/UComp/R/TETSmodel.R | 104 +++++- UComp-5.1.5/UComp/R/TETSvalidate.R | 4 UComp-5.1.5/UComp/R/UCS3functions.R | 85 +++-- UComp-5.1.5/UComp/R/UCestim.R | 37 +- UComp-5.1.5/UComp/R/UCmodel.R | 56 +++ UComp-5.1.5/UComp/R/data.R | 28 + UComp-5.1.5/UComp/R/tools.R | 476 +++++++++++++++++--------------- UComp-5.1.5/UComp/man/AIC.UComp.Rd | 5 UComp-5.1.5/UComp/man/ARIMA.Rd | 18 + UComp-5.1.5/UComp/man/ARIMAestim.Rd | 12 UComp-5.1.5/UComp/man/ARIMAforecast.Rd | 4 UComp-5.1.5/UComp/man/ARIMAsetup.Rd | 18 + UComp-5.1.5/UComp/man/ARIMAvalidate.Rd | 2 UComp-5.1.5/UComp/man/Accuracy.Rd | 2 UComp-5.1.5/UComp/man/BIC.UComp.Rd | 5 UComp-5.1.5/UComp/man/ETS.Rd | 25 + UComp-5.1.5/UComp/man/ETScomponents.Rd | 5 UComp-5.1.5/UComp/man/ETSestim.Rd | 2 UComp-5.1.5/UComp/man/ETSforecast.Rd | 8 UComp-5.1.5/UComp/man/ETSsetup.Rd | 25 + UComp-5.1.5/UComp/man/ETSvalidate.Rd | 2 UComp-5.1.5/UComp/man/OECDgdp.Rd | 5 UComp-5.1.5/UComp/man/TETS.Rd | 25 + UComp-5.1.5/UComp/man/TETScomponents.Rd | 5 UComp-5.1.5/UComp/man/TETSestim.Rd | 2 UComp-5.1.5/UComp/man/TETSforecast.Rd | 8 UComp-5.1.5/UComp/man/TETSsetup.Rd | 25 + UComp-5.1.5/UComp/man/TETSvalidate.Rd | 2 UComp-5.1.5/UComp/man/UC.Rd | 2 UComp-5.1.5/UComp/man/UCcommand.Rd |only UComp-5.1.5/UComp/man/UCcomponents.Rd | 2 UComp-5.1.5/UComp/man/UCdisturb.Rd | 2 UComp-5.1.5/UComp/man/UCestim.Rd | 2 UComp-5.1.5/UComp/man/UCfilter.Rd | 2 UComp-5.1.5/UComp/man/UCforecast.Rd | 4 UComp-5.1.5/UComp/man/UChp.Rd | 2 UComp-5.1.5/UComp/man/UCsetup.Rd | 4 UComp-5.1.5/UComp/man/UCsmooth.Rd | 2 UComp-5.1.5/UComp/man/UCvalidate.Rd | 2 UComp-5.1.5/UComp/man/USgdp.Rd | 5 UComp-5.1.5/UComp/man/airpas.Rd | 5 UComp-5.1.5/UComp/man/arma2tsi.Rd | 3 UComp-5.1.5/UComp/man/auxInvBoxCox.Rd | 3 UComp-5.1.5/UComp/man/box.cox.Rd | 5 UComp-5.1.5/UComp/man/ch4.Rd | 5 UComp-5.1.5/UComp/man/colMedians.Rd | 2 UComp-5.1.5/UComp/man/cusum.Rd | 3 UComp-5.1.5/UComp/man/extract.Rd | 2 UComp-5.1.5/UComp/man/gaussTest.Rd | 3 UComp-5.1.5/UComp/man/gdp.Rd | 5 UComp-5.1.5/UComp/man/getp0.Rd | 2 UComp-5.1.5/UComp/man/ident.Rd | 2 UComp-5.1.5/UComp/man/inv.box.cox.Rd | 5 UComp-5.1.5/UComp/man/invBoxCox.Rd | 3 UComp-5.1.5/UComp/man/ipi.Rd | 5 UComp-5.1.5/UComp/man/plotAcfPacf.Rd | 3 UComp-5.1.5/UComp/man/plotSlide.Rd | 2 UComp-5.1.5/UComp/man/predict.UComp.Rd | 4 UComp-5.1.5/UComp/man/rowMedians.Rd | 2 UComp-5.1.5/UComp/man/sales.Rd | 5 UComp-5.1.5/UComp/man/size.Rd | 6 UComp-5.1.5/UComp/man/slide.Rd | 2 UComp-5.1.5/UComp/man/slideAux.Rd | 5 UComp-5.1.5/UComp/man/sumStats.Rd | 2 UComp-5.1.5/UComp/man/tests.Rd | 3 UComp-5.1.5/UComp/man/tsDisplay.Rd | 3 UComp-5.1.5/UComp/man/zplane.Rd | 3 UComp-5.1.5/UComp/src/ARIMAmodel.h | 87 +++-- UComp-5.1.5/UComp/src/UCompC.cpp | 266 ----------------- 93 files changed, 1112 insertions(+), 829 deletions(-)
Title: Identification of Dysregulated MiRNAs Based on MiRNA-MiRNA
Interaction Network
Description: A systematic biology tool was developed to identify dysregulated miRNAs via a miRNA-miRNA interaction network. 'IDMIR' first constructed a weighted miRNA interaction network through integrating miRNA-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific-disease context, and then, it used a network propagation algorithm on the network to identify significantly dysregulated miRNAs.
Author: Junwei Han [aut, cre, cph],
Xilong Zhao [aut],
Jiashuo Wu [aut]
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between IDMIR versions 0.1.0 dated 2023-11-09 and 0.1.1 dated 2025-11-18
DESCRIPTION | 10 +- MD5 | 12 +-- R/IdentifyMiRNA.R | 6 - build/vignette.rds |binary data/MirnaData.rda |binary inst/doc/IDMIR.R | 14 ++-- inst/doc/IDMIR.html | 180 +++++++++++++++++++++++++--------------------------- 7 files changed, 109 insertions(+), 113 deletions(-)
Title: A Cross Between a 2D Density Plot and a Scatter Plot
Description: A cross between a 2D density plot and a scatter plot,
implemented as a 'ggplot2' geom. Points in the scatter plot are
colored by the number of neighboring points. This is useful to
visualize the 2D-distribution of points in case of overplotting.
Author: Lukas P. M. Kremer [aut, cre] ,
Simon Anders [ctb]
Maintainer: Lukas P. M. Kremer <L-Kremer@web.de>
Diff between ggpointdensity versions 0.2.0 dated 2025-05-16 and 0.2.1 dated 2025-11-18
DESCRIPTION | 8 +-- MD5 | 38 +++++++++------- NAMESPACE | 2 NEWS.md |only R/geom_pointdensity.R | 8 +-- R/ggpointdensity-package.R | 1 README.md | 63 +++++++++++++++++++++++----- man/figures/make_demo_plots.qmd | 55 +++++++++++++++++++++++- man/figures/pointdensity.png |binary man/figures/pointdensity_adj.png |binary man/figures/pointdensity_custom.png |binary man/figures/pointdensity_facet.png |binary man/figures/pointdensity_facet_relative.png |only man/figures/pointdensity_logo.png |binary man/figures/pointdensity_methods.png |only man/figures/pointdensity_relative.png |only man/figures/pointdensity_shape.png |binary man/figures/pointdensity_xyadj.png |binary man/figures/pointdensity_zoom.png |binary man/figures/scatter_dens_bin2d.png |binary man/geom_pointdensity.Rd | 40 +++++++++-------- man/stat_pointdensity.Rd | 38 +++++++++------- 22 files changed, 181 insertions(+), 72 deletions(-)
More information about ggpointdensity at CRAN
Permanent link
Title: Convert and Impute Dates to ISO Standard ("International
Organization for Standardization")
Description: Provides functions to convert and impute date values to the ISO 8601
standard format. The package automatically recognizes date patterns within a
data frame and transforms them into consistent ISO-formatted dates. It also
supports imputing missing month or day components in partial date strings
using user-defined rules. Only one date format can be applied within a single
data frame column.
Author: Lukasz Andrzejewski [aut, cre]
Maintainer: Lukasz Andrzejewski <lukasz.coding@gmail.com>
Diff between datetoiso versions 1.0.0 dated 2025-11-12 and 1.1.1 dated 2025-11-18
datetoiso-1.0.0/datetoiso/man/prepare_date.Rd |only datetoiso-1.1.1/datetoiso/DESCRIPTION | 6 datetoiso-1.1.1/datetoiso/MD5 | 35 datetoiso-1.1.1/datetoiso/NAMESPACE | 1 datetoiso-1.1.1/datetoiso/NEWS.md | 86 - datetoiso-1.1.1/datetoiso/R/date_to_iso.R | 112 + datetoiso-1.1.1/datetoiso/R/impute_date.R | 378 +++- datetoiso-1.1.1/datetoiso/R/viso.R | 2 datetoiso-1.1.1/datetoiso/README.md | 2 datetoiso-1.1.1/datetoiso/man/check_day_correctly_entered_dmy.Rd |only datetoiso-1.1.1/datetoiso/man/check_day_correctly_entered_ymd.Rd |only datetoiso-1.1.1/datetoiso/man/check_if_month_year_entered.Rd |only datetoiso-1.1.1/datetoiso/man/check_if_only_year_entered.Rd |only datetoiso-1.1.1/datetoiso/man/check_if_year_month_day_entered.Rd |only datetoiso-1.1.1/datetoiso/man/check_if_year_month_entered.Rd |only datetoiso-1.1.1/datetoiso/man/clean_date.Rd |only datetoiso-1.1.1/datetoiso/man/find_unknow_date.Rd | 40 datetoiso-1.1.1/datetoiso/man/impute_date.Rd | 144 - datetoiso-1.1.1/datetoiso/man/impute_date_dmy.Rd | 138 - datetoiso-1.1.1/datetoiso/man/impute_date_ymd.Rd | 138 - datetoiso-1.1.1/datetoiso/man/remove_no_date_characters.Rd | 62 datetoiso-1.1.1/datetoiso/tests/testthat/test-date_to_iso.R |only datetoiso-1.1.1/datetoiso/tests/testthat/test-impute_date.R | 807 +++++++++- 23 files changed, 1545 insertions(+), 406 deletions(-)
Title: Interface with Google Cloud Document AI API
Description: R interface for the Google Cloud Services 'Document AI API'
<https://cloud.google.com/document-ai> with additional tools for
output file parsing and text reconstruction. 'Document AI' is a
powerful server-based OCR service that extracts text and tables from
images and PDF files with high accuracy. 'daiR' gives R users
programmatic access to this service and additional tools to handle
and visualize the output. See the package website <https://dair.info/>
for more information and examples.
Author: Thomas Hegghammer [aut, cre]
Maintainer: Thomas Hegghammer <hegghammer@gmail.com>
Diff between daiR versions 1.0.1 dated 2024-11-13 and 1.2.0 dated 2025-11-18
DESCRIPTION | 11 MD5 | 92 - NAMESPACE | 2 NEWS.md | 27 R/auth.R | 17 R/draw.R | 212 ++ R/extract.R | 181 +- R/manipulate.R | 331 ++-- R/processors.R | 455 +++--- R/send_to_dai.R | 99 - R/utils.R | 14 R/xml.R | 900 +++++++---- R/zzz.R | 5 build/vignette.rds |binary inst/doc/complex_file_and_folder_management.R | 64 inst/doc/complex_file_and_folder_management.html | 5 inst/doc/configuration.R | 8 inst/doc/configuration.html | 5 inst/doc/gcs_storage.R | 64 inst/doc/gcs_storage.html | 5 inst/doc/quickstart.R | 44 inst/doc/quickstart.html | 5 inst/doc/reconstructing_text.R | 110 - inst/doc/reconstructing_text.html | 5 inst/doc/tables.R | 54 inst/doc/tables.Rmd | 4 inst/doc/tables.html | 7 inst/doc/usage.R | 90 - inst/doc/usage.Rmd | 2 inst/doc/usage.html | 7 man/create_processor.Rd | 2 man/get_ids_by_type.Rd |only man/get_processor_info.Rd | 2 man/get_processors.Rd | 2 man/get_versions_by_type.Rd |only man/list_processor_types.Rd | 2 man/make_hocr.Rd | 8 tests/testthat/test_auth.R | 220 ++ tests/testthat/test_draw.R | 1744 ++++++++++------------- tests/testthat/test_extract.R | 418 ++++- tests/testthat/test_manipulate.R | 1190 ++++++++++----- tests/testthat/test_processors.R | 754 ++++++--- tests/testthat/test_send_to_dai.R | 831 ++++++++++ tests/testthat/test_utils.R | 464 +++++- tests/testthat/test_xml.R | 585 +++++++ tests/testthat/test_zzz.R | 2 vignettes/tables.Rmd | 4 vignettes/usage.Rmd | 2 48 files changed, 6149 insertions(+), 2906 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.2-5 dated 2025-10-08 and 1.3-0 dated 2025-11-18
tram-1.2-5/tram/cleanup |only tram-1.3-0/tram/DESCRIPTION | 27 - tram-1.3-0/tram/MD5 | 113 ++-- tram-1.3-0/tram/NAMESPACE | 2 tram-1.3-0/tram/R/Compris.R | 6 tram-1.3-0/tram/R/methods.R | 30 - tram-1.3-0/tram/R/mmlt.R | 16 tram-1.3-0/tram/R/mtram.R | 8 tram-1.3-0/tram/R/tram.R | 77 ++- tram-1.3-0/tram/build/partial.rdb |binary tram-1.3-0/tram/build/vignette.rds |binary tram-1.3-0/tram/demo/NAMI.Rout.save |only tram-1.3-0/tram/demo/SCI_ePolr.Rout.save |only tram-1.3-0/tram/demo/hcc.Rout.save |only tram-1.3-0/tram/demo/mtram.Rout.save |only tram-1.3-0/tram/demo/npb.Rout.save |only tram-1.3-0/tram/demo/npn.Rout.save |only tram-1.3-0/tram/demo/stram.R | 51 +- tram-1.3-0/tram/demo/stram.Rout.save |only tram-1.3-0/tram/demo/survtram.R | 22 tram-1.3-0/tram/demo/survtram.Rout.save |only tram-1.3-0/tram/demo/tram.Rout.save |only tram-1.3-0/tram/demo/undernutrition.R | 10 tram-1.3-0/tram/demo/undernutrition.Rout.save |only tram-1.3-0/tram/inst/NEWS.Rd | 22 tram-1.3-0/tram/inst/doc/NAMI.R | 91 ++- tram-1.3-0/tram/inst/doc/NAMI.Rnw | 328 ++++++++++---- tram-1.3-0/tram/inst/doc/NAMI.pdf |binary tram-1.3-0/tram/inst/doc/mtram.R | 19 tram-1.3-0/tram/inst/doc/mtram.Rnw | 21 tram-1.3-0/tram/inst/doc/mtram.pdf |binary tram-1.3-0/tram/inst/doc/survtram.R | 183 +++----- tram-1.3-0/tram/inst/doc/survtram.Rnw | 457 +++++++++----------- tram-1.3-0/tram/inst/doc/survtram.pdf |binary tram-1.3-0/tram/inst/doc/tram.R | 3 tram-1.3-0/tram/inst/doc/tram.Rnw | 3 tram-1.3-0/tram/inst/doc/tram.pdf |binary tram-1.3-0/tram/inst/simulations/sim2d.Rout.save |only tram-1.3-0/tram/inst/simulations/sim5d.Rout.save |only tram-1.3-0/tram/man/Compris.Rd | 46 -- tram-1.3-0/tram/man/Coxph.Rd | 12 tram-1.3-0/tram/man/mmlt.Rd | 9 tram-1.3-0/tram/man/mtram.Rd | 2 tram-1.3-0/tram/man/tram-methods.Rd | 2 tram-1.3-0/tram/man/tram.Rd | 41 + tram-1.3-0/tram/tests/Coxph-Ex.Rout.save |only tram-1.3-0/tram/tests/Polr-Ex.R |only tram-1.3-0/tram/tests/Polr-Ex.Rout.save |only tram-1.3-0/tram/tests/Survreg-Ex.R | 9 tram-1.3-0/tram/tests/Survreg-Ex.Rout.save |only tram-1.3-0/tram/tests/bugfixes.R | 41 + tram-1.3-0/tram/tests/intercepts-Ex.Rout.save |only tram-1.3-0/tram/tests/mmlt-Ex.R | 2 tram-1.3-0/tram/tests/mmlt-Ex.Rout.save |only tram-1.3-0/tram/tests/mtram-Ex.Rout.save |only tram-1.3-0/tram/tests/stram-Ex.R | 4 tram-1.3-0/tram/tests/stram-Ex.Rout.save |only tram-1.3-0/tram/vignettes/COXME-margsurv-plot-1.pdf |binary tram-1.3-0/tram/vignettes/HTECOX-DFS-plot-1.pdf |binary tram-1.3-0/tram/vignettes/NAMI.Rnw | 328 ++++++++++---- tram-1.3-0/tram/vignettes/TVAR-DFS-plot-1.pdf |binary tram-1.3-0/tram/vignettes/TVAR-iDFS-plot-1.pdf |binary tram-1.3-0/tram/vignettes/defs.tex | 2 tram-1.3-0/tram/vignettes/mlt.bib | 47 ++ tram-1.3-0/tram/vignettes/mtram.Rnw | 21 tram-1.3-0/tram/vignettes/survtram.Rnw | 457 +++++++++----------- tram-1.3-0/tram/vignettes/survtram.bib | 1 tram-1.3-0/tram/vignettes/tram.Rnw | 3 68 files changed, 1497 insertions(+), 1019 deletions(-)
Title: A Lightweight and Flexible Web Framework
Description: A very flexible framework for building server side logic in
R. The framework is unopinionated when it comes to how HTTP requests
and WebSocket messages are handled and supports all levels of app
complexity; from serving static content to full-blown dynamic
web-apps. Fiery does not hold your hand as much as e.g. the shiny
package does, but instead sets you free to create your web app the way
you want.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between fiery versions 1.4.0 dated 2025-11-10 and 1.4.1 dated 2025-11-18
DESCRIPTION | 10 ++--- MD5 | 20 +++++----- NAMESPACE | 1 NEWS.md | 4 ++ R/Fire.R | 7 ++- R/loggers.R | 8 ++++ R/request_store.R | 6 +-- man/loggers.Rd | 3 + tests/testthat/_snaps/Fire.md | 68 +++++++++++++++++----------------- tests/testthat/_snaps/HandlerStack.md | 44 +++++++++++----------- tests/testthat/helper.R | 1 11 files changed, 95 insertions(+), 77 deletions(-)
Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 3.0.3 dated 2025-08-19 and 3.1.3 dated 2025-11-18
DESCRIPTION | 10 - MD5 | 75 ++++--- NAMESPACE | 130 ++++++------- NEWS.md | 17 + R/CalcBYprobs.R | 4 R/CalcMaxMismatch.R | 11 - R/CalcOHLLR.R | 29 ++ R/CalcPairLL.R | 23 +- R/CalcParentProbs.R | 3 R/CheckLifeHist.R | 9 R/CountPairOH.R |only R/DuplicateCheck.R | 20 +- R/GetMaybeRel.R | 4 R/MkAgePrior.R | 7 R/PedPolish.R | 32 +-- R/PedToNum.R | 11 - R/PlotPropAssigned.R |only R/Prepare.R | 31 +-- R/SeqListSummary.R | 30 +-- R/Sequoia_F90wrappers.R | 8 R/Sequoia_Main.R | 61 +++--- inst/doc/quick_start_example1.html | 14 - inst/doc/vignette-age.pdf |binary inst/doc/vignette-main.pdf |binary inst/doc/vignette_mtDNA.pdf |binary man/CalcMaxMismatch.Rd | 11 - man/CalcOHLLR.Rd | 19 + man/CalcPairLL.Rd | 17 + man/CountOH.Rd |only man/DuplicateCheck.Rd | 4 man/GetMaybeRel.Rd | 9 man/LLtoProb.Rd | 3 man/MakeAgePrior.Rd | 5 man/PedPolish.Rd | 4 man/PlotPropAssigned.Rd |only man/SeqParSib.Rd | 2 man/SummarySeq.Rd | 17 + man/sequoia.Rd | 51 +++-- src/Sequoia.f90 | 365 +++++++++++++++++++------------------ src/countpairOH.f90 |only src/init.c | 48 +++- 41 files changed, 620 insertions(+), 464 deletions(-)
More information about automatedRecLin at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-17 1.14.6.7
2025-11-10 1.14.6.4
Title: Get Silhouettes of Organisms from PhyloPic
Description: Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>)
to fetch silhouette images of organisms. Includes functions for adding
silhouettes to both base R plots and ggplot2 plots.
Author: William Gearty [aut, cre] ,
Lewis A. Jones [aut] ,
Scott Chamberlain [ctb] ,
Martin R. Smith [ctb] ,
David L. Miller [ctb]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rphylopic versions 1.5.0 dated 2024-09-04 and 1.6.0 dated 2025-11-18
DESCRIPTION | 35 ++- MD5 | 100 +++++----- NAMESPACE | 7 NEWS.md | 8 R/add_phylopic_base.r | 4 R/add_phylopic_tree.R |only R/geom_phylopic.R | 14 + R/get_phylopic.R | 51 +++-- R/pick_phylopic.R | 3 R/resolve_phylopic.R | 19 - R/rphylopic-package.R | 1 README.md | 4 build/vignette.rds |binary inst/doc/a-getting-started.Rmd | 12 - inst/doc/a-getting-started.html | 19 + inst/doc/b-advanced-ggplot.Rmd | 4 inst/doc/b-advanced-ggplot.html | 33 +-- inst/doc/c-advanced-base.Rmd | 18 + inst/doc/c-advanced-base.html | 48 ++-- man/add_phylopic_tree.Rd |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/get_phylopic.Rd | 14 + tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_phylopic/phylopic-in-background.svg | 4 tests/testthat/_snaps/add_phylopic/phylopic-png-in-background.svg | 4 tests/testthat/_snaps/add_phylopic_tree |only tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-alt-height-and-width.svg | 28 +- tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-no-dims.svg | 28 +- tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-png.svg | 28 +- tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-width.svg | 56 ++--- tests/testthat/_snaps/geom_phylopic/geom-phylopic.svg | 56 ++--- tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph-with-img.svg | 28 +- tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph-with-larger-glyphs.svg | 28 +- tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph-with-uuid.svg | 28 +- tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph.svg | 28 +- tests/testthat/test-add_phylopic_tree.R |only tests/testthat/test-geom_phylopic.R | 2 tests/testthat/test-get_phylopic.R | 8 vignettes/a-getting-started.Rmd | 12 - vignettes/b-advanced-ggplot.Rmd | 4 vignettes/base-penguin-plot-1-1.png |binary vignettes/base-penguin-plot-2-1.png |binary vignettes/base-penguin-plot-3-1.png |binary vignettes/base-penguin-plot-4-1.png |binary vignettes/base-penguin-plot-5-1.png |binary vignettes/base-phylo-plot-1-1.png |binary vignettes/base-phylo-plot-2-1.png |binary vignettes/base-phylo-plot-3-1.png |binary vignettes/base-phylo-plot-4-1.png |binary vignettes/c-advanced-base.Rmd | 18 + vignettes/source |only 54 files changed, 430 insertions(+), 324 deletions(-)
Title: A Simple Router for HTTP and WebSocket Requests
Description: In order to make sure that web request ends up in the correct
handler function a router is often used. 'routr' is a package implementing a
simple but powerful routing functionality for R based servers. It is a fully
functional 'fiery' plugin, but can also be used with other 'httpuv' based
servers.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between routr versions 1.0.0 dated 2025-08-21 and 1.1.0 dated 2025-11-18
DESCRIPTION | 12 - MD5 | 66 ++++--- NEWS.md | 18 ++ R/aaa.R | 38 ++++ R/asset_route.R | 98 ++++++++--- R/openapi_route.R | 78 +++++++-- R/otel.R |only R/redirector.R | 13 + R/report_route.R | 232 ++++++++++++++++++++++------ R/resource_route.R | 163 +++++++++++-------- R/route.R | 154 ++++++++++++++---- R/routestack.R | 115 ++++++++++--- R/shared_secret_route.R | 20 +- R/sizelimit_route.R | 2 R/tidy_api.R | 6 man/AssetRoute.Rd | 4 man/Route-class.Rd | 9 - man/RouteStack.Rd | 26 +++ man/report_info.Rd | 5 man/report_route.Rd | 38 +++- man/route_add.Rd | 2 man/route_merge.Rd | 2 man/route_stack.Rd | 2 tests/testthat/_snaps/report_route.md | 2 tests/testthat/fixtures/reports/python.qmd |only tests/testthat/fixtures/reports/test.qmd | 4 tests/testthat/fixtures/sample_openapi.yaml | 4 tests/testthat/test-asset_route.R | 30 +++ tests/testthat/test-openapi_route.R | 6 tests/testthat/test-report_route.R | 79 +++++++-- tests/testthat/test-resource_route.R | 10 - tests/testthat/test-route.R | 55 +++++- tests/testthat/test-routestack.R | 86 +++++----- tests/testthat/test-shared_secret_route.R | 24 +- tests/testthat/test-sizelimit_route.R | 20 +- 35 files changed, 1032 insertions(+), 391 deletions(-)
Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database.
<https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut, cre] ,
Simon Goring [aut]
Maintainer: Dominguez Vidana Socorro <dominguezvid@wisc.edu>
Diff between neotoma2 versions 1.0.7 dated 2025-07-14 and 1.0.8 dated 2025-11-18
neotoma2-1.0.7/neotoma2/R/fix_nulls.r |only neotoma2-1.0.7/neotoma2/R/get0_params.R |only neotoma2-1.0.7/neotoma2/R/getids.R |only neotoma2-1.0.7/neotoma2/R/neotoma-methods.R |only neotoma2-1.0.7/neotoma2/R/pingNeotoma.R |only neotoma2-1.0.7/neotoma2/R/set_contacts.R |only neotoma2-1.0.7/neotoma2/R/set_publications.R |only neotoma2-1.0.7/neotoma2/man/add_chronology-collunit-chronology-data.frame-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-authors-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-chronologies-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-chronology-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-collunit-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-collunits-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-contact-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-contacts-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-dataset-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-datasets-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-publication-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-publications-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-taxa-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.data.frame-taxon-method.Rd |only neotoma2-1.0.7/neotoma2/man/as.list-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/author-class.Rd |only neotoma2-1.0.7/neotoma2/man/authors-class.Rd |only neotoma2-1.0.7/neotoma2/man/build_specimen.Rd |only neotoma2-1.0.7/neotoma2/man/c-chronologies-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-collunits-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-contact-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-contacts-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-datasets-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-missingOrNULL-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-publications-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-samples-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/c-taxa-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-chronologies-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-chronology-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-collunit-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-collunits-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-contact-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-contacts-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-dataset-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-datasets-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-publication-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-sample-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-samples-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-set-chronology-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-set-collunit-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-set-dataset-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-set-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-set-taxon-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-taxa-method.Rd |only neotoma2-1.0.7/neotoma2/man/cash-taxon-method.Rd |only neotoma2-1.0.7/neotoma2/man/check_contacts.contacts.Rd |only neotoma2-1.0.7/neotoma2/man/chronologies-class.Rd |only neotoma2-1.0.7/neotoma2/man/chronologies-collunits-method.Rd |only neotoma2-1.0.7/neotoma2/man/chronologies-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/chronologies-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/chronology-class.Rd |only neotoma2-1.0.7/neotoma2/man/cite_data-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/collunit-class.Rd |only neotoma2-1.0.7/neotoma2/man/collunits-class.Rd |only neotoma2-1.0.7/neotoma2/man/collunits-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/contact-class.Rd |only neotoma2-1.0.7/neotoma2/man/contacts-class.Rd |only neotoma2-1.0.7/neotoma2/man/dataset-class.Rd |only neotoma2-1.0.7/neotoma2/man/datasets-class.Rd |only neotoma2-1.0.7/neotoma2/man/datasets-collunit-method.Rd |only neotoma2-1.0.7/neotoma2/man/datasets-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/datasets-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/doi-publication-method.Rd |only neotoma2-1.0.7/neotoma2/man/doi-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/filter.sites.Rd |only neotoma2-1.0.7/neotoma2/man/get_contacts.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_contacts.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/get_datasets.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_datasets.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/get_datasets.site.Rd |only neotoma2-1.0.7/neotoma2/man/get_datasets.sites.Rd |only neotoma2-1.0.7/neotoma2/man/get_downloads.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/get_downloads.sites.Rd |only neotoma2-1.0.7/neotoma2/man/get_publications.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_publications.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/get_publications.publication.Rd |only neotoma2-1.0.7/neotoma2/man/get_publications.publications.Rd |only neotoma2-1.0.7/neotoma2/man/get_sites.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_sites.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/get_taxa.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_taxon.default.Rd |only neotoma2-1.0.7/neotoma2/man/get_taxon.numeric.Rd |only neotoma2-1.0.7/neotoma2/man/getids.collunit.Rd |only neotoma2-1.0.7/neotoma2/man/getids.collunits.Rd |only neotoma2-1.0.7/neotoma2/man/getids.site.Rd |only neotoma2-1.0.7/neotoma2/man/getids.sites.Rd |only neotoma2-1.0.7/neotoma2/man/length-chronologies-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-collunits-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-datasets-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-publications-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-samples-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/length-taxa-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-collunit-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-contact-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-dataset-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-publication-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-publications-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/names-taxon-method.Rd |only neotoma2-1.0.7/neotoma2/man/plot-sites-method.Rd |only neotoma2-1.0.7/neotoma2/man/plotLeaflet-site-method.Rd |only neotoma2-1.0.7/neotoma2/man/publication-class.Rd |only neotoma2-1.0.7/neotoma2/man/publications-class.Rd |only neotoma2-1.0.7/neotoma2/man/repositories-class.Rd |only 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|only neotoma2-1.0.7/neotoma2/tests/testthat/test_setsample.R |only neotoma2-1.0.7/neotoma2/tests/testthat/test_setsite.r |only neotoma2-1.0.8/neotoma2/DESCRIPTION | 22 neotoma2-1.0.8/neotoma2/MD5 | 507 ++---- neotoma2-1.0.8/neotoma2/NAMESPACE | 88 - neotoma2-1.0.8/neotoma2/NEWS.md | 76 neotoma2-1.0.8/neotoma2/R/01_classDefinitions.R | 788 +++++----- neotoma2-1.0.8/neotoma2/R/02_genericDefinitions.R | 81 - neotoma2-1.0.8/neotoma2/R/build_chron.R | 55 neotoma2-1.0.8/neotoma2/R/build_collunit.R | 35 neotoma2-1.0.8/neotoma2/R/build_dataset.R | 42 neotoma2-1.0.8/neotoma2/R/build_sample.R | 58 neotoma2-1.0.8/neotoma2/R/build_site.R | 22 neotoma2-1.0.8/neotoma2/R/build_specimen.R | 63 neotoma2-1.0.8/neotoma2/R/build_speleothem.R |only neotoma2-1.0.8/neotoma2/R/check_contacts.R | 13 neotoma2-1.0.8/neotoma2/R/chroncontrols.R | 54 neotoma2-1.0.8/neotoma2/R/chronology-methods.R | 135 - neotoma2-1.0.8/neotoma2/R/clean.R | 158 -- neotoma2-1.0.8/neotoma2/R/cleanNULL.R | 13 neotoma2-1.0.8/neotoma2/R/collunits-methods.R | 276 +-- neotoma2-1.0.8/neotoma2/R/contact-methods.R | 142 - neotoma2-1.0.8/neotoma2/R/dataset-methods.R | 141 - neotoma2-1.0.8/neotoma2/R/filter.R | 148 - neotoma2-1.0.8/neotoma2/R/get_contacts.R | 167 +- neotoma2-1.0.8/neotoma2/R/get_datasets.R | 162 +- neotoma2-1.0.8/neotoma2/R/get_documentation.R |only neotoma2-1.0.8/neotoma2/R/get_downloads.R | 97 - neotoma2-1.0.8/neotoma2/R/get_manual.R | 10 neotoma2-1.0.8/neotoma2/R/get_params.R |only neotoma2-1.0.8/neotoma2/R/get_publications.R | 265 +-- neotoma2-1.0.8/neotoma2/R/get_sites.R | 131 - neotoma2-1.0.8/neotoma2/R/get_specimens.R | 321 +--- neotoma2-1.0.8/neotoma2/R/get_speleothems.R |only neotoma2-1.0.8/neotoma2/R/get_stats.R | 95 - neotoma2-1.0.8/neotoma2/R/get_table.R | 33 neotoma2-1.0.8/neotoma2/R/get_taxa.R | 86 - neotoma2-1.0.8/neotoma2/R/get_taxon.R | 182 +- neotoma2-1.0.8/neotoma2/R/getids.r |only neotoma2-1.0.8/neotoma2/R/group_data.R | 55 neotoma2-1.0.8/neotoma2/R/parseLocation.R | 46 neotoma2-1.0.8/neotoma2/R/parseURL.R | 229 +- neotoma2-1.0.8/neotoma2/R/parse_site.R | 118 - neotoma2-1.0.8/neotoma2/R/parse_speleothem.R |only neotoma2-1.0.8/neotoma2/R/pingNeotoma.r |only neotoma2-1.0.8/neotoma2/R/plotLeaflet.R | 60 neotoma2-1.0.8/neotoma2/R/pubAuthors.R | 13 neotoma2-1.0.8/neotoma2/R/publication-methods.R | 125 - neotoma2-1.0.8/neotoma2/R/samples-methods.R | 76 neotoma2-1.0.8/neotoma2/R/samples.R | 295 +-- neotoma2-1.0.8/neotoma2/R/set_chronology.R | 17 neotoma2-1.0.8/neotoma2/R/set_collunit.R | 29 neotoma2-1.0.8/neotoma2/R/set_contact.R |only neotoma2-1.0.8/neotoma2/R/set_dataset.R | 16 neotoma2-1.0.8/neotoma2/R/set_publication.R |only neotoma2-1.0.8/neotoma2/R/set_sample.R | 19 neotoma2-1.0.8/neotoma2/R/set_server.R | 27 neotoma2-1.0.8/neotoma2/R/set_site.R | 37 neotoma2-1.0.8/neotoma2/R/set_speleothem.R |only neotoma2-1.0.8/neotoma2/R/site-methods.R | 593 +++---- neotoma2-1.0.8/neotoma2/R/speleothem-methods.R |only neotoma2-1.0.8/neotoma2/R/speleothemdetails.R |only neotoma2-1.0.8/neotoma2/R/speleothems.R |only neotoma2-1.0.8/neotoma2/R/subset-methods.R | 66 neotoma2-1.0.8/neotoma2/R/taxa.R | 198 +- neotoma2-1.0.8/neotoma2/R/taxon-methods.R | 193 -- neotoma2-1.0.8/neotoma2/R/testNull.R | 8 neotoma2-1.0.8/neotoma2/R/toWide.R | 134 - neotoma2-1.0.8/neotoma2/R/use_na.R | 40 neotoma2-1.0.8/neotoma2/R/utils-pipe.R | 2 neotoma2-1.0.8/neotoma2/README.md | 2 neotoma2-1.0.8/neotoma2/build/vignette.rds |binary neotoma2-1.0.8/neotoma2/inst/CITATION | 2 neotoma2-1.0.8/neotoma2/inst/doc/neotoma2-package.R | 1 neotoma2-1.0.8/neotoma2/inst/doc/neotoma2-package.Rmd | 1 neotoma2-1.0.8/neotoma2/inst/doc/neotoma2-package.html | 19 neotoma2-1.0.8/neotoma2/man/add_chronology.Rd | 32 neotoma2-1.0.8/neotoma2/man/as.data.frame.Rd |only neotoma2-1.0.8/neotoma2/man/author_classes.Rd |only neotoma2-1.0.8/neotoma2/man/c.Rd |only neotoma2-1.0.8/neotoma2/man/cash-set.Rd |only neotoma2-1.0.8/neotoma2/man/cash.Rd |only neotoma2-1.0.8/neotoma2/man/check_contacts.Rd | 8 neotoma2-1.0.8/neotoma2/man/chroncontrols-sites-method.Rd | 3 neotoma2-1.0.8/neotoma2/man/chronologies-collunit-method.Rd | 6 neotoma2-1.0.8/neotoma2/man/chronologies.Rd | 11 neotoma2-1.0.8/neotoma2/man/chronologies_classes.Rd |only neotoma2-1.0.8/neotoma2/man/cite_data-sites-method.Rd | 4 neotoma2-1.0.8/neotoma2/man/cite_data.Rd | 8 neotoma2-1.0.8/neotoma2/man/clean.Rd |only neotoma2-1.0.8/neotoma2/man/collunits.Rd | 5 neotoma2-1.0.8/neotoma2/man/collunits_classes.Rd |only neotoma2-1.0.8/neotoma2/man/contacts_classes.Rd |only neotoma2-1.0.8/neotoma2/man/datasets-collunits-method.Rd | 8 neotoma2-1.0.8/neotoma2/man/datasets.Rd | 11 neotoma2-1.0.8/neotoma2/man/datasets_classes.Rd |only neotoma2-1.0.8/neotoma2/man/doi-sites-method.Rd | 4 neotoma2-1.0.8/neotoma2/man/doi.Rd | 9 neotoma2-1.0.8/neotoma2/man/filter.Rd | 46 neotoma2-1.0.8/neotoma2/man/get_contacts.Rd | 13 neotoma2-1.0.8/neotoma2/man/get_datasets.Rd | 36 neotoma2-1.0.8/neotoma2/man/get_documentation.Rd |only neotoma2-1.0.8/neotoma2/man/get_downloads.Rd | 25 neotoma2-1.0.8/neotoma2/man/get_manual.Rd | 1 neotoma2-1.0.8/neotoma2/man/get_params.Rd |only neotoma2-1.0.8/neotoma2/man/get_publications.Rd | 43 neotoma2-1.0.8/neotoma2/man/get_sites.Rd | 30 neotoma2-1.0.8/neotoma2/man/get_speleothems.Rd |only neotoma2-1.0.8/neotoma2/man/get_stats.Rd | 28 neotoma2-1.0.8/neotoma2/man/get_table.Rd | 6 neotoma2-1.0.8/neotoma2/man/get_taxa.Rd | 24 neotoma2-1.0.8/neotoma2/man/get_taxon.Rd | 36 neotoma2-1.0.8/neotoma2/man/getids.Rd | 31 neotoma2-1.0.8/neotoma2/man/length.Rd |only neotoma2-1.0.8/neotoma2/man/missingOrNULL-class.Rd | 4 neotoma2-1.0.8/neotoma2/man/names.Rd |only neotoma2-1.0.8/neotoma2/man/pingNeotoma.Rd | 2 neotoma2-1.0.8/neotoma2/man/pipe.Rd | 4 neotoma2-1.0.8/neotoma2/man/plot.Rd |only neotoma2-1.0.8/neotoma2/man/plotLeaflet-sites-method.Rd | 4 neotoma2-1.0.8/neotoma2/man/plotLeaflet.Rd | 8 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neotoma2-1.0.8/neotoma2/man/speleothems-sites-method.Rd |only neotoma2-1.0.8/neotoma2/man/speleothems.Rd |only neotoma2-1.0.8/neotoma2/man/speleothems_classes.Rd |only neotoma2-1.0.8/neotoma2/man/sub-sub.Rd |only neotoma2-1.0.8/neotoma2/man/sub-subset.Rd |only neotoma2-1.0.8/neotoma2/man/sub.Rd |only neotoma2-1.0.8/neotoma2/man/subset.Rd |only neotoma2-1.0.8/neotoma2/man/taxa-sites-method.Rd | 14 neotoma2-1.0.8/neotoma2/man/taxa.Rd | 11 neotoma2-1.0.8/neotoma2/man/taxa_classes.Rd |only neotoma2-1.0.8/neotoma2/man/toWide.Rd | 53 neotoma2-1.0.8/neotoma2/tests/testthat/all_aliases.csv |only neotoma2-1.0.8/neotoma2/tests/testthat/test_add_chronology.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_c.R | 16 neotoma2-1.0.8/neotoma2/tests/testthat/test_chroncontrols.R | 88 - neotoma2-1.0.8/neotoma2/tests/testthat/test_chronologies.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_cite_data.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_clean.R | 19 neotoma2-1.0.8/neotoma2/tests/testthat/test_collunits.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_coordinates.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_datasets.R | 132 - neotoma2-1.0.8/neotoma2/tests/testthat/test_doi.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_examples.R | 45 neotoma2-1.0.8/neotoma2/tests/testthat/test_filter.R | 281 +-- neotoma2-1.0.8/neotoma2/tests/testthat/test_get_contacts.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_datasets.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_documentation.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_downloads.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_manual.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_publications.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_sites.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_speleothems.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_stats.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_table.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_taxa.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_get_taxon.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_getids.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_length.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_parse_location.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_pingNeotoma.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_plot.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_plotLeaflet.r | 25 neotoma2-1.0.8/neotoma2/tests/testthat/test_samples.R | 78 neotoma2-1.0.8/neotoma2/tests/testthat/test_set_chronology.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_collunit.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_contact.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_dataset.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_default.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_publication.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_sample.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_server.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_site.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_set_speleothem.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_sites.R | 12 neotoma2-1.0.8/neotoma2/tests/testthat/test_specimens.R | 14 neotoma2-1.0.8/neotoma2/tests/testthat/test_speleothems.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_summary.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_taxa.R |only neotoma2-1.0.8/neotoma2/tests/testthat/test_toWide.R | 62 neotoma2-1.0.8/neotoma2/vignettes/neotoma2-package.Rmd | 1 395 files changed, 3960 insertions(+), 4307 deletions(-)
Title: Sparse Canonical Correlation Analysis for High-Dimensional Mixed
Data
Description: Semi-parametric approach for sparse canonical correlation analysis
which can handle mixed data types: continuous, binary and truncated continuous.
Bridge functions are provided to connect Kendall's tau to latent correlation
under the Gaussian copula model. The methods are described in
Yoon, Carroll and Gaynanova (2020) <doi:10.1093/biomet/asaa007> and
Yoon, Mueller and Gaynanova (2021) <doi:10.1080/10618600.2021.1882468>.
Author: Grace Yoon [aut] ,
Mingze Huang [ctb] ,
Irina Gaynanova [aut, cre]
Maintainer: Irina Gaynanova <irinagn@umich.edu>
Diff between mixedCCA versions 1.6.2 dated 2022-09-09 and 1.6.3 dated 2025-11-18
DESCRIPTION | 21 +++++++++++---------- MD5 | 24 ++++++++++++------------ R/GenerateData.R | 22 +++++++++++----------- R/KendallCCA.R | 38 +++++++++++++++++++------------------- R/estimateR.R | 16 ++++++++-------- man/GenerateData.Rd | 22 +++++++++++----------- man/estimateR.Rd | 16 ++++++++-------- man/find_w12bic.Rd | 14 +++++++------- man/mixedCCA.Rd | 12 ++++++------ man/myrcc.Rd | 6 +++--- man/standardCCA.Rd | 6 +++--- src/Makevars | 6 ++---- src/Makevars.win | 7 ++----- 13 files changed, 103 insertions(+), 107 deletions(-)
Title: Simulate Evapotranspiration and Soil Moisture with the SVAT
Model LWF-Brook90
Description: Provides a flexible and easy-to use interface for the soil vegetation
atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran.
The model simulates daily transpiration, interception, soil and snow evaporation,
streamflow and soil water fluxes through a soil profile covered with vegetation,
as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003)
<doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions
for model set up, execution and parallelization provides easy access to plot-level SVAT
simulations, as well as multi-run and large-scale applications.
Author: Paul Schmidt-Walter [aut, cre] ,
Volodymyr Trotsiuk [aut] ,
Klaus Hammel [aut],
Martin Kennel [aut],
Anthony Federer [aut],
Tobias Hohenbrink [aut] ,
Gisbert Hetkamp [aut],
Michael Koehler [aut] ,
Robert Nuske [ctb] ,
Bavarian State Institute of Fores [...truncated...]
Maintainer: Paul Schmidt-Walter <paulsw@posteo.de>
Diff between LWFBrook90R versions 0.6.2 dated 2025-04-29 and 0.6.3 dated 2025-11-18
LWFBrook90R-0.6.2/LWFBrook90R/man/param_to_rlwfbrook90.Rd |only LWFBrook90R-0.6.3/LWFBrook90R/DESCRIPTION | 22 LWFBrook90R-0.6.3/LWFBrook90R/MD5 | 74 +-- LWFBrook90R-0.6.3/LWFBrook90R/NAMESPACE | 1 LWFBrook90R-0.6.3/LWFBrook90R/NEWS.md | 40 + LWFBrook90R-0.6.3/LWFBrook90R/R/MakeSeasLAI.R | 72 ++ LWFBrook90R-0.6.3/LWFBrook90R/R/MakeStand.R | 3 LWFBrook90R-0.6.3/LWFBrook90R/R/approx_standprop.R | 2 LWFBrook90R-0.6.3/LWFBrook90R/R/extract_layer_output.R | 4 LWFBrook90R-0.6.3/LWFBrook90R/R/param_to_rbrook90.R | 244 ++++++---- LWFBrook90R-0.6.3/LWFBrook90R/R/pedotransfer_functions.R | 12 LWFBrook90R-0.6.3/LWFBrook90R/R/plantb90.R | 29 - LWFBrook90R-0.6.3/LWFBrook90R/R/plantcoupmodel.R | 17 LWFBrook90R-0.6.3/LWFBrook90R/R/r_lwfbrook90.R | 105 ++-- LWFBrook90R-0.6.3/LWFBrook90R/R/runLWFB90.R | 79 ++- LWFBrook90R-0.6.3/LWFBrook90R/R/setparms_LWFB90.R | 4 LWFBrook90R-0.6.3/LWFBrook90R/R/standprop_yrly_to_param.R | 20 LWFBrook90R-0.6.3/LWFBrook90R/inst/doc/LWFBrook90R-2-Options_Param.R | 24 LWFBrook90R-0.6.3/LWFBrook90R/inst/doc/LWFBrook90R-2-Options_Param.Rmd | 24 LWFBrook90R-0.6.3/LWFBrook90R/inst/doc/LWFBrook90R-2-Options_Param.html | 39 - LWFBrook90R-0.6.3/LWFBrook90R/inst/examples/make_seasLAI-help.R | 40 + LWFBrook90R-0.6.3/LWFBrook90R/inst/examples/pedotransfer_functions-help.R | 2 LWFBrook90R-0.6.3/LWFBrook90R/man/LWFBrook90R-package.Rd | 1 LWFBrook90R-0.6.3/LWFBrook90R/man/approx_standprop.Rd | 2 LWFBrook90R-0.6.3/LWFBrook90R/man/extract_layer_output.Rd | 4 LWFBrook90R-0.6.3/LWFBrook90R/man/make_seasLAI.Rd | 58 +- LWFBrook90R-0.6.3/LWFBrook90R/man/parms_to_rbrook90.Rd |only LWFBrook90R-0.6.3/LWFBrook90R/man/plant_b90.Rd | 35 + LWFBrook90R-0.6.3/LWFBrook90R/man/plant_coupmodel.Rd | 15 LWFBrook90R-0.6.3/LWFBrook90R/man/ptfs.Rd | 14 LWFBrook90R-0.6.3/LWFBrook90R/man/r_lwfbrook90.Rd | 49 -- LWFBrook90R-0.6.3/LWFBrook90R/man/set_paramLWFB90.Rd | 3 LWFBrook90R-0.6.3/LWFBrook90R/man/standprop_yearly_to_param.Rd | 2 LWFBrook90R-0.6.3/LWFBrook90R/src/PFILE.h | 4 LWFBrook90R-0.6.3/LWFBrook90R/src/md_brook90.f95 | 82 +-- LWFBrook90R-0.6.3/LWFBrook90R/src/md_typedefs.f95 | 87 +++ LWFBrook90R-0.6.3/LWFBrook90R/src/skeleton.c | 10 LWFBrook90R-0.6.3/LWFBrook90R/tests/testthat/test-runLWFB90.R | 30 + LWFBrook90R-0.6.3/LWFBrook90R/vignettes/LWFBrook90R-2-Options_Param.Rmd | 24 39 files changed, 788 insertions(+), 489 deletions(-)
Title: An API Wrapper for 'DAWA' - 'The Danish Address Web API'
Description: Functions for interacting with all sections of
the official 'Danish Address Web API' (also known as 'DAWA')
<https://api.dataforsyningen.dk>. The development of this package is
completely independent from the government agency, Klimadatastyrelsen,
who maintains the API.
Author: Aleksander Bang-Larsen [aut, cre, cph] ,
Agency of Climate Data [ctb]
Maintainer: Aleksander Bang-Larsen <contact@aleksanderbl.dk>
Diff between dawaR versions 0.3.0 dated 2025-02-13 and 0.3.1 dated 2025-11-18
DESCRIPTION | 14 MD5 | 110 NEWS.md | 6 R/afstemningsomraader.R | 8 R/base_api.R | 19 R/get_data.R | 4 R/status_check.R | 45 build/vignette.rds |binary inst/doc/dawaR.html | 14 inst/doc/status.html | 21 tests/fixtures/afstemningsomraader_autocomplete_returns_the_right_answer_1.yml | 40 tests/fixtures/afstemningsomraader_autocomplete_returns_the_right_answer_2.yml | 24 tests/fixtures/afstemningsomraader_autocomplete_returns_the_right_answer_3.yml | 36 tests/fixtures/afstemningsomraader_autocomplete_returns_the_right_answer_4.yml | 324 tests/fixtures/autocomplete_returns_the_right_answer_afstemningsomraader_aebel.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_afstemningsomraader_broender.yml | 324 tests/fixtures/autocomplete_returns_the_right_answer_afstemningsomraader_dok.yml | 40 tests/fixtures/autocomplete_returns_the_right_answer_afstemningsomraader_roeddi.yml | 36 tests/fixtures/autocomplete_returns_the_right_answer_kommuner_aebel.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_kommuner_broender.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_kommuner_dok.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_kommuner_roeddi.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_politikredse_aebel.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_politikredse_broender.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_politikredse_dok.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_politikredse_roeddi.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_regioner_aebel.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_regioner_broender.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_regioner_dok.yml | 24 tests/fixtures/autocomplete_returns_the_right_answer_regioner_roeddi.yml | 24 tests/fixtures/get_data_kommuner_snapshot.yml | 204 tests/fixtures/get_data_politikredse_snapshot.yml | 82 tests/fixtures/get_data_regioner_snapshot.yml | 46 tests/fixtures/regioner_api_default.yml | 46 tests/fixtures/regioner_api_no_cache.yml | 46 tests/fixtures/regioner_get_data.yml | 46 tests/fixtures/regioner_get_data_list.yml | 46 tests/fixtures/regioner_get_data_no_list.yml | 46 tests/fixtures/reverse_geocode_afstemningsomraader.yml | 32 tests/fixtures/reverse_geocode_politikredse.yml | 30 tests/fixtures/reverse_geocode_regioner_1.yml | 24 tests/fixtures/reverse_geocode_regioner_2.yml | 24 tests/fixtures/voting_reverse_geocode_returns_information_in_different_formats_1.yml | 60 tests/fixtures/voting_reverse_geocode_returns_information_in_different_formats_2.yml | 60 tests/fixtures/voting_reverse_geocode_returns_information_in_different_formats_3.yml | 60 tests/testthat/_snaps/afstemningsomraader.md | 16 tests/testthat/_snaps/autocomplete.md | 342 tests/testthat/_snaps/base_api.md | 44 tests/testthat/_snaps/get_data.md |23130 +++++----- tests/testthat/_snaps/get_map_data-kommuner.md | 50 tests/testthat/_snaps/get_map_data-politikredse.md | 140 tests/testthat/_snaps/get_map_data-regioner.md | 60 tests/testthat/_snaps/get_map_data-vote.md | 310 tests/testthat/_snaps/reverse.md | 14 tests/testthat/_snaps/status_check.md | 8 tests/testthat/test-status_check.R | 5 56 files changed, 13093 insertions(+), 13255 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [aut, cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.13 dated 2025-06-19 and 0.6.14 dated 2025-11-18
DESCRIPTION | 12 +- MD5 | 96 +++++++++++-------- NEWS.md | 9 + build/vignette.rds |binary inst/WORDLIST | 8 + inst/doc/advanced_usage.html | 7 - inst/doc/ard_how_to.html | 7 - inst/doc/baseline.html | 7 - inst/doc/clinical_trials.html | 7 - inst/doc/col_counts.html | 7 - inst/doc/custom_appearance.html | 7 - inst/doc/example_analysis_coxreg.html | 7 - inst/doc/exploratory_analysis.html | 9 - inst/doc/format_precedence.html | 7 - inst/doc/guided_intermediate.R |only inst/doc/guided_intermediate.Rmd |only inst/doc/guided_intermediate.html |only inst/doc/guided_intermediate_afun_reqs.R |only inst/doc/guided_intermediate_afun_reqs.Rmd |only inst/doc/guided_intermediate_afun_reqs.html |only inst/doc/guided_intermediate_split_reqs.R |only inst/doc/guided_intermediate_split_reqs.Rmd |only inst/doc/guided_intermediate_split_reqs.html |only inst/doc/guided_intermediate_translating_shells.R |only inst/doc/guided_intermediate_translating_shells.Rmd |only inst/doc/guided_intermediate_translating_shells.html |only inst/doc/introspecting_tables.html | 7 - inst/doc/manual_table_construction.html | 7 - inst/doc/pathing.html | 7 - inst/doc/rtables.html | 9 - inst/doc/sorting_pruning.html | 11 +- inst/doc/split_functions.html | 7 - inst/doc/subsetting_tables.html | 7 - inst/doc/tabulation_concepts.html | 3 inst/doc/tabulation_dplyr.html | 7 - inst/doc/title_footer.html | 7 - man/add_overall_level.Rd | 2 man/analyze_colvars.Rd | 2 man/append_topleft.Rd | 2 man/cell_values.Rd | 2 man/gfc.Rd | 2 man/int_methods.Rd | 2 man/matrix_form-VTableTree-method.Rd | 2 man/row_paths_summary.Rd | 2 man/split_cols_by.Rd | 2 man/split_cols_by_multivar.Rd | 2 man/split_rows_by.Rd | 2 man/table_shell.Rd | 2 man/table_structure.Rd | 2 man/tostring.Rd | 2 man/varcuts.Rd | 2 tests/testthat/test-lyt-tabulation.R | 11 -- tests/testthat/test-make-afun.R | 2 vignettes/guided_intermediate.Rmd |only vignettes/guided_intermediate_afun_reqs.Rmd |only vignettes/guided_intermediate_split_reqs.Rmd |only vignettes/guided_intermediate_translating_shells.Rmd |only 57 files changed, 178 insertions(+), 127 deletions(-)
Title: Precision Based Sample Size Calculation
Description: Bland (2009) <doi:10.1136/bmj.b3985> recommended to
base study sizes on the width of the confidence interval rather the power of
a statistical test. The goal of 'presize' is to provide functions for such
precision based sample size calculations. For a given sample size, the
functions will return the precision (width of the confidence interval), and
vice versa.
Author: Armando Lenz [aut],
Alan G. Haynes [cre, aut],
Andreas Limacher [aut],
Odile Stalder [ctb],
Marie Roumet [ctb]
Maintainer: Alan G. Haynes <alan.haynes@unibe.ch>
Diff between presize versions 0.3.7 dated 2023-02-27 and 0.3.9 dated 2025-11-18
presize-0.3.7/presize/inst/shinyApp/rsconnect |only presize-0.3.7/presize/man/figures/sticker.png |only presize-0.3.9/presize/DESCRIPTION | 21 presize-0.3.9/presize/MD5 | 20 presize-0.3.9/presize/NEWS.md | 8 presize-0.3.9/presize/R/shinyApp.R | 2 presize-0.3.9/presize/build/partial.rdb |binary presize-0.3.9/presize/build/vignette.rds |binary presize-0.3.9/presize/inst/doc/presize.R | 4 presize-0.3.9/presize/inst/doc/presize.html | 584 ++++++++++++------------ presize-0.3.9/presize/man/launch_presize_app.Rd | 2 presize-0.3.9/presize/man/presize-package.Rd | 10 12 files changed, 346 insertions(+), 305 deletions(-)
Title: Logit Models w/Preference & WTP Space Utility Parameterizations
Description: Fast estimation of multinomial (MNL) and mixed logit (MXL) models in R. Models can be estimated using "Preference" space or "Willingness-to-pay" (WTP) space utility parameterizations. Weighted models can also be estimated. An option is available to run a parallelized multistart optimization loop with random starting points in each iteration, which is useful for non-convex problems like MXL models or models with WTP space utility parameterizations. The main optimization loop uses the 'nloptr' package to minimize the negative log-likelihood function. Additional functions are available for computing and comparing WTP from both preference space and WTP space models and for predicting expected choices and choice probabilities for sets of alternatives based on an estimated model. Mixed logit models can include uncorrelated or correlated heterogeneity covariances and are estimated using maximum simulated likelihood based on the algorithms in Train (2009) <doi:10.1017/CBO9780511805271>. [...truncated...]
Author: John Helveston [aut, cre, cph] ,
Connor Forsythe [ctb]
Maintainer: John Helveston <john.helveston@gmail.com>
Diff between logitr versions 1.1.2 dated 2024-07-24 and 1.1.3 dated 2025-11-18
DESCRIPTION | 12 MD5 | 62 +-- NAMESPACE | 2 R/encoding.R | 292 +++++++++++++++++- R/methods.R | 378 ++++++++++++++++++----- R/modelInputs.R | 5 R/utils.R | 43 +- README.md | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/basic_usage.R | 16 inst/doc/basic_usage.html | 61 +-- inst/doc/benchmark.R | 76 ++-- inst/doc/benchmark.html | 3 inst/doc/convergence.R | 612 +++++++++++++++++++------------------- inst/doc/convergence.html | 1 inst/doc/data_formatting.R | 43 ++ inst/doc/data_formatting.Rmd | 77 ++++ inst/doc/data_formatting.html | 176 ++++++++++ inst/doc/interactions.html | 71 ++-- inst/doc/mnl_models.html | 74 ++-- inst/doc/mnl_models_weighted.html | 116 +++---- inst/doc/mxl_models.R | 80 ++-- inst/doc/mxl_models.html | 24 - inst/doc/predict.R | 28 - inst/doc/predict.html | 22 - inst/doc/summarizing_results.R | 4 inst/doc/summarizing_results.html | 278 ++++++++--------- inst/doc/utility_models.html | 3 man/miscmethods.logitr.Rd | 3 man/validate_data.Rd |only tests/testthat/test_validation.R |only vignettes/data_formatting.Rmd | 77 ++++ 33 files changed, 1769 insertions(+), 880 deletions(-)
Title: Lagrangian Multiplier Smoothing Splines for Smooth Function
Estimation
Description: Implements Lagrangian multiplier smoothing splines for flexible
nonparametric regression and function estimation. Provides tools for fitting,
prediction, and inference using a constrained optimization approach to
enforce smoothness.
Supports generalized linear models, Weibull accelerated failure time (AFT) models,
quadratic programming problems, and customizable arbitrary correlation structures.
Options for fitting in parallel are provided. The method builds upon the framework described
by Ezhov et al. (2018) <doi:10.1515/jag-2017-0029> using Lagrangian multipliers
to fit cubic splines. For more information on correlation structure estimation,
see Searle et al. (2009) <ISBN:978-0470009598>. For quadratic programming and
constrained optimization in general, see Nocedal & Wright (2006) <doi:10.1007/978-0-387-40065-5>.
For a comprehensive background on smoothing splines, see Wahba (1990)
<doi:10.1137/1.9781611970128> and Wood (2006) <ISBN:978-1584884743>
[...truncated...]
Author: Matthew Davis [aut, cre]
Maintainer: Matthew Davis <matthewlouisdavis@gmail.com>
Diff between lgspline versions 0.2.0 dated 2025-04-24 and 0.3.0 dated 2025-11-18
DESCRIPTION | 9 +- MD5 | 15 ++-- NEWS.md |only R/lgspline-details.R | 167 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/lgspline.R | 8 +- inst/WORDLIST | 119 +++++++++++++++++++----------------- man/Details.Rd | 167 ++++++++++++++++++++++++++++++++++++++++++++++++++- man/lgspline.Rd | 8 +- man/lgspline.fit.Rd | 4 - 9 files changed, 420 insertions(+), 77 deletions(-)
Title: Simulation and Resampling Methods for Epistemic Fuzzy Data
Description: Random simulations of fuzzy numbers are still a challenging problem. The aim of this package is to provide the respective
procedures to simulate fuzzy random variables, especially in the case of the piecewise linear fuzzy numbers (PLFNs,
see Coroianua et al. (2013) <doi:10.1016/j.fss.2013.02.005> for the further details).
Additionally, the special resampling algorithms known as the epistemic bootstrap are provided (see Grzegorzewski and Romaniuk
(2022) <doi:10.34768/amcs-2022-0021>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-031-08974-9_39>,
Romaniuk et al. (2024) <doi:10.32614/RJ-2024-016>)
together with the functions to apply statistical tests and estimate various characteristics based on the epistemic bootstrap.
The package also includes real-life datasets of epistemic fuzzy triangular and trapezoidal numbers.
The fuzzy numbers used in this package are consistent with the 'FuzzyNumbers' package.
Author: Maciej Romaniuk [cre, aut] ,
Przemyslaw Grzegorzewski [aut] ,
Abbas Parchami [aut] ,
Luis Carvalho [ctb, cph]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzySimRes versions 0.4.7 dated 2025-07-28 and 0.4.8 dated 2025-11-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SimulateFuzzyNumber.R | 6 +++--- build/vignette.rds |binary 4 files changed, 10 insertions(+), 10 deletions(-)