Title: Create and Register Conditions
Description: An interface for creating new condition generators objects.
Generators are special functions that can be saved in registries and linked
to other functions. Utilities for documenting your generators, and new
conditions is provided for package development.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between cnd versions 0.1.0 dated 2025-02-26 and 0.1.1 dated 2025-11-21
DESCRIPTION | 18 ++-- MD5 | 40 ++++----- NEWS.md | 6 + R/cnd-cnd-conditions.R | 16 +-- R/cnd-package.R | 4 R/condition.R | 149 +++++++++++++++++++------------------ R/document.R | 43 ++++++++-- R/exports.R | 2 R/print.R | 2 R/register.R | 8 + R/utils.R | 6 - README.md | 10 +- man/cnd-cnd-conditions.Rd | 12 +- man/cnd-package.Rd | 2 man/cnd_document.Rd | 10 +- man/cnd_exports.Rd | 2 man/condition.Rd | 27 +++--- tests/testthat/_snaps/condition.md | 24 +++-- tests/testthat/_snaps/document.md | 18 ++-- tests/testthat/_snaps/print.md | 17 +++- tests/testthat/test-condition.R | 17 ++-- 21 files changed, 253 insertions(+), 180 deletions(-)
Title: Easy Access for South Korea Census Data and Boundaries
Description: Census and administrative data in South Korea are a basic source of
quantitative and mixed-methods research for social and urban scientists.
This package provides a 'sf' (Pebesma et al., 2024 <doi:10.32614/CRAN.package.sf>)
based standardized workflow based on direct open API access to the major census and
administrative data sources and pre-generated files in South Korea.
Author: Insang Song [aut, cre] ,
Sohyun Park [aut, ctb] ,
Hyesop Shin [aut, ctb]
Maintainer: Insang Song <geoissong@snu.ac.kr>
Diff between tidycensuskr versions 0.2.3 dated 2025-11-10 and 0.2.4 dated 2025-11-21
DESCRIPTION | 6 MD5 | 40 + NEWS.md | 5 R/anycensus.R | 2 R/datasets.R | 4 R/zzz.R | 4 build/vignette.rds |binary data/censuskor.rda |binary inst/doc/v01_intro.html | 6 inst/doc/v02_regional_analysis.html | 12 inst/doc/v03_gallery.html | 6 inst/doc/v04_data_cleaning_kosis.html | 4 inst/doc/v05_contributors_guide.R |only inst/doc/v05_contributors_guide.Rmd |only inst/doc/v05_contributors_guide.html |only inst/extdata/lookup_district_code.csv | 555 +++++++++++------------- man/anycensus.Rd | 2 man/censuskor.Rd | 4 man/figures/gat.jpg |binary man/figures/vig05-01-kosis-maintab.png |only man/figures/vig05-02-kosis-level2sel.png |only man/figures/vig05-03-kosis-largedatawarning.png |only man/figures/vig05-04-kosis-exceeding20k.png |only man/figures/vig05-05-kosis-downloaddata.png |only man/figures/vig05-06-kosis-fileservice.png |only vignettes/v05_contributors_guide.Rmd |only 26 files changed, 331 insertions(+), 319 deletions(-)
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Description: Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
Author: Teng Fei [aut, cre, cph] ,
Tyler Funnell [aut] ,
Nicholas Waters [aut] ,
Sandeep Raj [aut]
Maintainer: Teng Fei <feit1@mskcc.org>
Diff between FLORAL versions 0.5.0 dated 2025-07-13 and 0.6.0 dated 2025-11-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/Using-FLORAL-for-Microbiome-Analysis.html | 18 +++++++++--------- src/pgee.cpp | 3 --- 5 files changed, 22 insertions(+), 21 deletions(-)
Title: Calculating Optimum Sampling Effort in Community Ecology
Description: A system for calculating the optimal sampling effort, based on the ideas of
"Ecological cost-benefit optimization" as developed by A. Underwood (1997,
ISBN 0 521 55696 1). Data is obtained from simulated ecological communities with
prep_data() which formats and arranges the initial data, and then the
optimization follows the following procedure of four functions: (1) prep_data()
takes the original dataset and creates simulated sets that can be used as a
basis for estimating statistical power and type II error. (2) sim_beta() is used
to estimate the statistical power for the different sampling efforts specified
by the user. (3) sim_cbo() calculates then the optimal sampling effort, based
on the statistical power and the sampling costs. Additionally, (4) scompvar()
calculates the variation components necessary for (5) Underwood_cbo() to calculate
the optimal combination of number of sites and samples depending on either
an economic budget or on a desired statistical accuracy. Lastly, (6) [...truncated...]
Author: Edlin Guerra-Castro [aut, cph] ,
Arturo Sanchez-Porras [aut, cre]
Maintainer: Arturo Sanchez-Porras <sp.arturo@gmail.com>
Diff between ecocbo versions 0.13.0 dated 2025-08-23 and 1.0.0 dated 2025-11-21
DESCRIPTION | 10 MD5 | 42 - NAMESPACE | 8 NEWS.md | 13 R/data.R | 21 R/plot_power.R | 47 + R/plot_power0.R | 61 +- R/prep_data.R | 107 +++- R/prep_data0.R | 446 +++++++++++------- R/sim_cbo.R | 21 R/utils-globals.R | 21 R/utils.R | 1102 +++++++++++++++++++++++---------------------- build/partial.rdb |binary build/vignette.rds |binary data/dataFish.rda |only inst/doc/ecocbo-guide.R | 4 inst/doc/ecocbo-guide.Rmd | 6 inst/doc/ecocbo-guide.html | 26 - man/dataFish.Rd |only man/plot_power.Rd | 13 man/prep_data.Rd | 23 man/sim_cbo.Rd | 7 vignettes/ecocbo-guide.Rmd | 6 23 files changed, 1168 insertions(+), 816 deletions(-)
Title: Detecting Extremal Values in a Normal Linear Model
Description: Provides a method to detect values poorly explained by a Gaussian linear model. The procedure is based on the maximum of the absolute value of the studentized residuals, which is a parameter-free statistic. This approach generalizes several procedures used to detect abnormal values during longitudinal monitoring of biological markers. For methodological details, see: Berthelot G., Saulière G., Dedecker J. (2025). "DEViaN-LM An R Package for Detecting Abnormal Values in the Gaussian Linear Model". HAL Id: hal-05230549. <https://hal.science/hal-05230549>.
Author: Guillaume Sauliere [aut] ,
Geoffroy Berthelot [aut, cre] ,
Jerome Dedecker [aut]
Maintainer: Geoffroy Berthelot <geoffroy.berthelot@insep.fr>
Diff between devianLM versions 1.0.6 dated 2025-11-15 and 1.0.7 dated 2025-11-21
DESCRIPTION | 8 ++-- MD5 | 10 +++--- NEWS.md | 7 ++++ R/devianlm_stats.R | 15 ++++----- man/devianlm_stats.Rd | 6 +-- man/get_devianlm_threshold.Rd | 70 +++++++++++++++++++++--------------------- 6 files changed, 61 insertions(+), 55 deletions(-)
Title: Adjusted Limited Dependent Variable Mixture Models
Description: The goal of the package 'aldvmm' is to fit adjusted limited
dependent variable mixture models of health state utilities. Adjusted
limited dependent variable mixture models are finite mixtures of normal
distributions with an accumulation of density mass at the limits, and a gap
between 100% quality of life and the next smaller utility value. The
package 'aldvmm' uses the likelihood and expected value functions proposed
by Hernandez Alava and Wailoo (2015) <doi:10.1177/1536867X1501500307> using
normal component distributions and a multinomial logit model of
probabilities of component membership.
Author: Mark Pletscher [aut, cre, cph],
Achim Zeileis [ctb]
Maintainer: Mark Pletscher <pletscher.mark@gmail.com>
Diff between aldvmm versions 0.8.8 dated 2023-10-28 and 0.9.0 dated 2025-11-21
DESCRIPTION | 12 MD5 | 92 - NEWS.md | 6 R/aldvmm.R | 2 R/aldvmm.ll.R | 136 +- R/aldvmm.sc.R | 393 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/html_vignette.R | 2500 ++++++++++++++++++------------------- inst/doc/html_vignette.Rmd | 402 +++-- inst/doc/html_vignette.html | 1600 ++++++++++++----------- man/aldvmm-package.Rd | 77 - tests/testthat/test.aldvmm.gr.R | 26 vignettes/R-warnings.txt | 3 vignettes/df.RData |binary vignettes/html_vignette.Rmd | 402 +++-- vignettes/plot_box_se.png |binary vignettes/plot_box_yhat.png |binary vignettes/plot_comp_mhl_bfgs.png |binary vignettes/plot_comp_mhl_hjn.png |binary vignettes/plot_comp_pred.png |binary vignettes/plot_hist_obs.png |binary vignettes/plot_hist_pred.png |binary vignettes/rep_tab_reg.R | 7 vignettes/tab_comp_coef.RData |binary vignettes/tab_comp_cov.RData |binary vignettes/tab_comp_ll.RData |binary vignettes/tab_comp_mae.RData |binary vignettes/tab_comp_mse.RData |binary vignettes/tab_comp_time.RData |binary vignettes/tab_diff_se.RData |binary vignettes/tab_diff_yhat.RData |binary vignettes/tab_rstata_coef.RData |binary vignettes/tab_rstata_se.RData |binary vignettes/tab_sum_const.RData |binary vignettes/tab_sum_cstata.RData |binary vignettes/tab_sum_cstr.RData |binary vignettes/tab_sum_mod1bfgs.RData |binary vignettes/tab_sum_mod1nlminb.RData |binary vignettes/tab_sum_mod2.RData |binary vignettes/tab_sum_mod2stata.RData |binary vignettes/tab_sum_stata1.RData |binary vignettes/tab_sum_stata2.RData |binary vignettes/tab_sum_stata3.RData |binary vignettes/tab_sum_stata4.RData |binary vignettes/tab_sum_tobit.RData |binary vignettes/textout.RData |binary 47 files changed, 2942 insertions(+), 2716 deletions(-)
Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
This is a re-admission after prior archival of version 0.3 dated 2025-11-07
Diff between ReliaGrowR versions 0.3 dated 2025-11-07 and 0.3.1 dated 2025-11-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/testdata.r | 1 - man/testdata.Rd | 3 --- tests/testthat/Rplots.pdf |binary tests/testthat/test-srr-duane.R | 3 +++ tests/testthat/test-srr-rga.R | 4 ++++ 7 files changed, 16 insertions(+), 13 deletions(-)
Title: Manipulate and Play 'ProTracker' Modules
Description: 'ProTracker' is a popular music tracker to sequence
music on a Commodore Amiga machine. This package offers the
opportunity to import, export, manipulate and play 'ProTracker'
module files. Even though the file format could be considered
archaic, it still remains popular to this date. This package
intends to contribute to this popularity and therewith
keeping the legacy of 'ProTracker' and the Commodore Amiga
alive. This package is the successor of 'ProTrackR' providing
better performance.
Author: Pepijn de Vries [aut, cre] ,
Olav Soerensen [aut]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ProTrackR2 versions 0.1.0 dated 2025-11-11 and 0.1.1 dated 2025-11-21
DESCRIPTION | 8 MD5 | 70 +- NAMESPACE | 1 NEWS.md | 112 ++-- R/ProTrackR2-package.R | 39 - R/cell.R | 214 ++++---- R/modplug.R | 48 - R/pattern.R | 29 - R/render.R | 338 ++++++------- R/s3.R | 858 ++++++++++++++++----------------- R/samples.R | 492 +++++++++--------- README.md | 144 ++--- inst/doc/ProTrackR_vs_ProTrackR2.Rmd | 356 ++++++------- inst/doc/ProTrackR_vs_ProTrackR2.html | 6 inst/doc/effect_commands.R | 4 inst/doc/effect_commands.Rmd | 314 ++++++------ inst/doc/effect_commands.html | 4 inst/doc/s3class.Rmd | 602 +++++++++++------------ inst/doc/s3class.html | 2 inst/doc/sel_assign.R | 2 inst/doc/sel_assign.Rmd | 360 ++++++------- inst/doc/sel_assign.html | 2 man/as_modplug_pattern.Rd | 2 man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/pt2_duration.Rd | 2 man/pt2_new_pattern.Rd | 6 man/pt2_pattern.Rd | 12 src/samp_io.cpp | 44 + tests/testthat/test_exceptions.R | 344 ++++++------- tests/testthat/test_misc.R | 32 - tests/testthat/test_sample.R | 164 +++--- vignettes/ProTrackR_vs_ProTrackR2.Rmd | 356 ++++++------- vignettes/effect_commands.Rmd | 314 ++++++------ vignettes/s3class.Rmd | 602 +++++++++++------------ vignettes/sel_assign.Rmd | 360 ++++++------- 38 files changed, 3146 insertions(+), 3097 deletions(-)
Title: Retrieve Data from MacLeish Field Station
Description: Download data from the Ada and Archibald MacLeish Field
Station in Whately, MA. The Ada
and Archibald MacLeish Field Station is a 260-acre patchwork of
forest and farmland located in West Whately, MA that provides opportunities
for faculty and students to pursue environmental research, outdoor
education, and low-impact recreation
(see <https://www.smith.edu/discover-smith/smith-action/sustainable-smith/macleish-field-station> for more information).
This package contains
weather data over several years, and spatial data on various man-made and
natural structures.
Author: Benjamin S. Baumer [aut, cre] ,
Rose Goueth [aut],
Wencong Li [aut],
Weijia Zhang [ctb],
Nicholas Horton [ctb],
Dominique Kelly [aut] ,
Albert Y. Kim [aut]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between macleish versions 0.3.9 dated 2022-07-06 and 0.3.10 dated 2025-11-21
DESCRIPTION | 24 +- MD5 | 28 +- NEWS.md | 6 R/data.R | 6 R/etl_extract.R | 110 +++++----- R/mass_gis.R | 2 R/phenocam.R | 24 +- build/vignette.rds |binary inst/doc/macleish.R | 157 ++++++++------- inst/doc/macleish.Rmd | 115 ++++++----- inst/doc/macleish.html | 404 ++++++++++++++++++++-------------------- man/etl_extract.etl_macleish.Rd | 36 +-- man/whately_2015.Rd | 6 tests/testthat/test-macleish.R | 4 vignettes/macleish.Rmd | 115 ++++++----- 15 files changed, 544 insertions(+), 493 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel, and 'Rcpp'
has been used to speed up calculations.
For more info about Gaussian process software, see Erickson et al. (2018)
<doi:10.1016/j.ejor.2017.10.002>.
Author: Collin Erickson [aut, cre]
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.16 dated 2025-08-26 and 0.2.17 dated 2025-11-21
DESCRIPTION | 6 MD5 | 33 ++-- NAMESPACE | 1 NEWS.md | 9 + R/GauPro_base.R | 19 ++ build/vignette.rds |binary inst/doc/CrossValidationErrorCorrection.html | 25 ++- inst/doc/GauPro.html | 8 - inst/doc/IntroductionToGPs.html | 4 inst/doc/derivatives.html | 4 inst/doc/surface_derivatives.html | 4 man/GauPro_Gauss.Rd | 52 +++---- man/GauPro_Gauss_LOO.Rd | 48 +++--- man/GauPro_base.Rd | 174 ++++++++++++------------- man/predict.GauPro_base.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test_1D.R | 5 tests/testthat/test_kernel_model_and_kernels.R | 48 +++--- 18 files changed, 238 insertions(+), 202 deletions(-)
Title: Blood Pressure Analysis in R
Description: A comprehensive package to aid in the analysis of blood pressure data of all forms by providing both descriptive and visualization tools for researchers.
Author: John Schwenck [aut, cre],
Irina Gaynanova [aut]
Maintainer: John Schwenck <jschwenck12@gmail.com>
Diff between bp versions 2.1.0 dated 2022-05-10 and 2.1.1 dated 2025-11-21
bp-2.1.0/bp/man/figures |only bp-2.1.1/bp/DESCRIPTION | 10 bp-2.1.1/bp/MD5 | 89 +-- bp-2.1.1/bp/NEWS.md | 4 bp-2.1.1/bp/R/bp_report.R | 36 - bp-2.1.1/bp/R/bp_sleep_metrics.R | 2 bp-2.1.1/bp/R/bp_stages.R | 532 ++++++++---------- bp-2.1.1/bp/R/bp_sv.R | 4 bp-2.1.1/bp/R/bp_tables.R | 2 bp-2.1.1/bp/R/bp_visuals_hist.R | 2 bp-2.1.1/bp/R/bp_visuals_scatter.R | 470 ++++++---------- bp-2.1.1/bp/R/bp_visuals_tables.R | 744 +++++++++++++------------- bp-2.1.1/bp/R/data.R | 2 bp-2.1.1/bp/R/data_process.R | 265 +++++---- bp-2.1.1/bp/R/data_process_helpers.R | 20 bp-2.1.1/bp/R/dip_calc.R | 8 bp-2.1.1/bp/R/dip_class_plot.R | 8 bp-2.1.1/bp/R/sv.R | 4 bp-2.1.1/bp/README.md | 285 +++++----- bp-2.1.1/bp/build/partial.rdb |binary bp-2.1.1/bp/build/vignette.rds |binary bp-2.1.1/bp/inst/doc/bp.R | 8 bp-2.1.1/bp/inst/doc/bp.Rmd | 2 bp-2.1.1/bp/inst/doc/bp.html | 987 ++++++++++++++++++++++------------- bp-2.1.1/bp/man/bp_children.Rd | 116 ++-- bp-2.1.1/bp/man/bp_ghana.Rd | 228 ++++---- bp-2.1.1/bp/man/bp_hist.Rd | 118 ++-- bp-2.1.1/bp/man/bp_hypnos.Rd | 70 +- bp-2.1.1/bp/man/bp_jhs.Rd | 74 +- bp-2.1.1/bp/man/bp_mag.Rd | 174 +++--- bp-2.1.1/bp/man/bp_preg.Rd | 188 +++--- bp-2.1.1/bp/man/bp_range.Rd | 168 ++--- bp-2.1.1/bp/man/bp_rats.Rd | 90 +-- bp-2.1.1/bp/man/bp_report.Rd | 36 - bp-2.1.1/bp/man/bp_scatter.Rd | 47 + bp-2.1.1/bp/man/bp_sleep_metrics.Rd | 2 bp-2.1.1/bp/man/bp_stages.Rd | 91 ++- bp-2.1.1/bp/man/bp_stats.Rd | 190 +++--- bp-2.1.1/bp/man/bp_sv.Rd | 4 bp-2.1.1/bp/man/bp_tables.Rd | 2 bp-2.1.1/bp/man/dip_calc.Rd | 222 +++---- bp-2.1.1/bp/man/dip_class_plot.Rd | 172 +++--- bp-2.1.1/bp/man/dow_tod_plots.Rd | 2 bp-2.1.1/bp/man/process_data.Rd | 49 + bp-2.1.1/bp/man/sv.Rd | 4 bp-2.1.1/bp/vignettes/bp.Rmd | 2 46 files changed, 2932 insertions(+), 2601 deletions(-)
Title: Pre-Processing of 'GENEActiv' Data
Description: Analytics to read in and segment raw 'GENEActiv' accelerometer data into epochs and events.
For more details on the 'GENEActiv' device, see <https://activinsights.com/resources/geneactiv-support-1-2/>.
Author: Joss Langford [aut],
Ian Long [aut],
Jia Ying Chua [aut, cre],
Activinsights Ltd [cph]
Maintainer: Jia Ying Chua <jiayingc@activinsights.com>
Diff between GENEAcore versions 1.0.1 dated 2025-04-09 and 1.1.2 dated 2025-11-21
GENEAcore-1.0.1/GENEAcore/inst/extdata/10Hz_calibration_file.bin |only GENEAcore-1.0.1/GENEAcore/man/aggregateEpochs.Rd |only GENEAcore-1.0.1/GENEAcore/man/aggregateEvents.Rd |only GENEAcore-1.0.1/GENEAcore/man/aggregatePeriods.Rd |only GENEAcore-1.0.1/GENEAcore/man/createEventMapping.Rd |only GENEAcore-1.0.1/GENEAcore/man/new_cut_times.Rd |only GENEAcore-1.0.1/GENEAcore/man/stepCounter.Rd |only GENEAcore-1.1.2/GENEAcore/DESCRIPTION | 8 GENEAcore-1.1.2/GENEAcore/MD5 | 107 GENEAcore-1.1.2/GENEAcore/NAMESPACE | 85 GENEAcore-1.1.2/GENEAcore/NEWS.md |only GENEAcore-1.1.2/GENEAcore/R/MPI_calibrate.R | 67 GENEAcore-1.1.2/GENEAcore/R/MPI_create.R | 1551 +++++----- GENEAcore-1.1.2/GENEAcore/R/MPI_detect.R | 298 - GENEAcore-1.1.2/GENEAcore/R/aggregate_periods.R | 124 GENEAcore-1.1.2/GENEAcore/R/apply_measures.R | 61 GENEAcore-1.1.2/GENEAcore/R/geneacore.R | 529 +-- GENEAcore-1.1.2/GENEAcore/R/globals.R | 2 GENEAcore-1.1.2/GENEAcore/R/sample_binfile.R | 331 +- GENEAcore-1.1.2/GENEAcore/R/step_counter.R | 164 - GENEAcore-1.1.2/GENEAcore/R/utils.R | 89 GENEAcore-1.1.2/GENEAcore/build/vignette.rds |binary GENEAcore-1.1.2/GENEAcore/inst/doc/GENEAcore.R | 73 GENEAcore-1.1.2/GENEAcore/inst/doc/GENEAcore.Rmd | 1022 +++--- GENEAcore-1.1.2/GENEAcore/inst/doc/GENEAcore.html | 129 GENEAcore-1.1.2/GENEAcore/inst/doc/breaking-changes.R |only GENEAcore-1.1.2/GENEAcore/inst/doc/breaking-changes.Rmd |only GENEAcore-1.1.2/GENEAcore/inst/doc/breaking-changes.html |only GENEAcore-1.1.2/GENEAcore/inst/extdata/10Hz_calibration_file_20Nov25.bin |only GENEAcore-1.1.2/GENEAcore/inst/extdata/GENEAcore_Data_Dictionary_21Nov2025.pdf |only GENEAcore-1.1.2/GENEAcore/inst/extdata/geneacore_functions.png |binary GENEAcore-1.1.2/GENEAcore/man/MPI_summary.Rd | 2 GENEAcore-1.1.2/GENEAcore/man/aggregate_epochs.Rd |only GENEAcore-1.1.2/GENEAcore/man/aggregate_events.Rd |only GENEAcore-1.1.2/GENEAcore/man/aggregate_periods.Rd |only GENEAcore-1.1.2/GENEAcore/man/apply_all.Rd |only GENEAcore-1.1.2/GENEAcore/man/apply_calibration.Rd | 14 GENEAcore-1.1.2/GENEAcore/man/apply_degrees.Rd | 4 GENEAcore-1.1.2/GENEAcore/man/apply_updown.Rd | 4 GENEAcore-1.1.2/GENEAcore/man/binfile_summary.Rd | 2 GENEAcore-1.1.2/GENEAcore/man/calc_autocalparams.Rd | 9 GENEAcore-1.1.2/GENEAcore/man/check_MPI.Rd |only GENEAcore-1.1.2/GENEAcore/man/check_time_format.Rd | 4 GENEAcore-1.1.2/GENEAcore/man/create_MPI.Rd | 5 GENEAcore-1.1.2/GENEAcore/man/create_event_mapping.Rd |only GENEAcore-1.1.2/GENEAcore/man/detect_nonmovement.Rd | 6 GENEAcore-1.1.2/GENEAcore/man/detect_transitions.Rd | 16 GENEAcore-1.1.2/GENEAcore/man/geneacore.Rd | 23 GENEAcore-1.1.2/GENEAcore/man/get_UniqueBinFileIdentifier.Rd | 2 GENEAcore-1.1.2/GENEAcore/man/get_UniqueBinFileIdentifier.dir.Rd |only GENEAcore-1.1.2/GENEAcore/man/get_UniqueBinFileIdentifier.filepath.Rd |only GENEAcore-1.1.2/GENEAcore/man/get_UniqueBinFileIdentifier.vector.Rd |only GENEAcore-1.1.2/GENEAcore/man/get_cut_times.Rd |only GENEAcore-1.1.2/GENEAcore/man/get_decimal_places.Rd | 11 GENEAcore-1.1.2/GENEAcore/man/remove_short_transitions.Rd |only GENEAcore-1.1.2/GENEAcore/man/round_columns.Rd | 8 GENEAcore-1.1.2/GENEAcore/man/sample_binfile.Rd | 12 GENEAcore-1.1.2/GENEAcore/man/step_counter.Rd |only GENEAcore-1.1.2/GENEAcore/tests/testthat/test-MPI_calibrate.R | 314 +- GENEAcore-1.1.2/GENEAcore/tests/testthat/test-MPI_create.R | 145 GENEAcore-1.1.2/GENEAcore/tests/testthat/test-MPI_detect.R |only GENEAcore-1.1.2/GENEAcore/tests/testthat/test-apply_measures.R | 6 GENEAcore-1.1.2/GENEAcore/tests/testthat/test-geneacore.R | 21 GENEAcore-1.1.2/GENEAcore/tests/testthat/test-sample_binfile.R | 20 GENEAcore-1.1.2/GENEAcore/tests/testthat/test-step_counter.R | 94 GENEAcore-1.1.2/GENEAcore/tests/testthat/test_aggregate_periods.R | 209 - GENEAcore-1.1.2/GENEAcore/vignettes/GENEAcore.Rmd | 1022 +++--- GENEAcore-1.1.2/GENEAcore/vignettes/breaking-changes.Rmd |only 68 files changed, 3649 insertions(+), 2944 deletions(-)
Title: Right to Left Dynamic Documents Using 'knitr'
Description: Provide seamless support for right-to-left (RTL) languages, such as Persian and Arabic,
in R Markdown documents and 'LaTeX' output. It includes functions and hooks that enable easy
integration of RTL language content, allowing users to create documents that adhere to RTL writing
conventions. For in-depth insights into dynamic documents and the 'knitr' package, consider referring
to Xie, Y (2014) <ISBN: 978-1-482-20353-0>.
Author: Foad Esmaeili [aut, cre, cph]
Maintainer: Foad Esmaeili <foadesmaeili5@gmail.com>
Diff between RTLknitr versions 1.0.1 dated 2025-07-28 and 1.1.1 dated 2025-11-21
DESCRIPTION | 8 - MD5 | 10 +- NEWS.md | 7 - R/hooks_rtl.R | 203 ++++++++++++++++++++++++------------------------ R/markdown_rtl_header.R | 4 man/hooks_rtl.Rd | 2 6 files changed, 122 insertions(+), 112 deletions(-)
Title: Multi-Horizon Electricity Demand Forecasting in High Resolution
Description: Advanced forecasting algorithms for long-term energy demand at the
national or regional level. The methodology is based on Grandón et al. (2024)
<doi:10.1016/j.apenergy.2023.122249>; Zimmermann & Ziel (2024)
<doi:10.1016/j.apenergy.2025.125444>. Real-time data, including power demand, weather conditions, and macroeconomic indicators, are provided through automated API integration with various institutions. The modular approach maintains transparency on the various model selection processes and encompasses the ability to be adapted to individual needs. 'oRaklE' tries to help facilitating robust decision-making in energy management and planning.
Author: Johannes Schwenzer [aut, cre, cph] ,
Simone Maxand [aut] ,
Tatiana Gonzalez Grandon [aut]
Maintainer: Johannes Schwenzer <schwenzer@europa-uni.de>
Diff between oRaklE versions 1.0.1 dated 2025-05-05 and 1.0.2 dated 2025-11-21
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 19 + R/add_holidays_mid_term.R | 27 + R/add_holidays_short_term.R | 29 +- R/decompose_load_data.R | 612 ++++++++++++++++++++++---------------------- R/full_forecast.R | 11 R/get_entsoE_data.R | 46 ++- R/get_macro_economic_data.R | 276 +++++++++++++++---- R/long_term_future_data.R | 226 ++++++++-------- R/long_term_lm.R | 4 README.md | 6 inst/doc/oRaklE.html | 3 man/decompose_load_data.Rd | 1 14 files changed, 752 insertions(+), 540 deletions(-)
Title: Permutation Tests for Linear Models
Description: Linear model functions using permutation tests.
Author: Bob Wheeler [aut],
Marco Torchiano [aut, cre]
Maintainer: Marco Torchiano <marco.torchiano@polito.it>
Diff between lmPerm versions 2.1.4 dated 2025-03-27 and 2.1.6 dated 2025-11-21
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++--------- R/permtst.R | 2 - README.md | 5 ++-- build/vignette.rds |binary inst/doc/lmPerm.R | 52 +++++++++++++++++++++++++-------------------------- inst/doc/lmPerm.Rnw | 7 ++---- inst/doc/lmPerm.pdf |binary src/lmPerm.c | 5 ++-- vignettes/lmPerm.Rnw | 7 ++---- 10 files changed, 51 insertions(+), 51 deletions(-)
Title: Extreme Quantile Regression Neural Networks for Risk Forecasting
Description: This framework enables forecasting and extrapolating measures of conditional risk
(e.g. of extreme or unprecedented events), including quantiles and exceedance probabilities,
using extreme value statistics and flexible neural network architectures.
It allows for capturing complex multivariate dependencies,
including dependencies between observations, such as sequential dependence (time-series).
The methodology was introduced in Pasche and Engelke (2024) <doi:10.1214/24-AOAS1907>
(also available in preprint: Pasche and Engelke (2022) <doi:10.48550/arXiv.2208.07590>).
Author: Olivier C. Pasche [aut, cre, cph]
Maintainer: Olivier C. Pasche <olivier_pasche@alumni.epfl.ch>
Diff between EQRN versions 0.1.1 dated 2025-03-17 and 0.1.2 dated 2025-11-21
DESCRIPTION | 14 ++-- MD5 | 28 +++++---- NAMESPACE | 1 NEWS.md | 32 ++++++---- R/EQRN.R | 18 ++---- R/EQRN_network_structures.R | 5 - R/EQRN_seq.R | 4 - R/EQRN_seq_network_structures.R | 2 R/QRN.R | 3 - R/install.R | 118 ++++++++++++++++++++++++++++++++++------ README.md | 41 ++++++++----- man/backend_is_installed.Rd |only man/default_device.Rd | 5 + man/ensure_backend_installed.Rd |only man/install_backend.Rd | 10 +-- man/onload_backend_installer.Rd | 4 - 16 files changed, 188 insertions(+), 97 deletions(-)
Title: Climate Variability Indices for Ecological Modelling
Description: Supports analysis of trends in climate change,
ecological and crop modelling.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [ctb, ths] ,
Svein Oe. Solberg [ctb, ths]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between climatrends versions 0.5 dated 2023-01-06 and 1.2 dated 2025-11-21
DESCRIPTION | 19 ++- LICENSE | 2 MD5 | 34 +++--- NEWS.md | 5 R/ETo.R | 149 ++++++++++++++------------- R/temperature.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 22 ++-- inst/doc/Climatology.Rmd | 25 ++-- inst/doc/Climatology.html | 42 +++---- inst/doc/Equations.html | 17 +-- inst/doc/Overview.Rmd | 97 ++++++++++++------ inst/doc/Overview.html | 245 ++++++++++++++++++++++++++-------------------- man/ETo.Rd | 7 - man/climatrends.Rd | 2 vignettes/Climatology.Rmd | 25 ++-- vignettes/Overview.Rmd | 97 ++++++++++++------ 18 files changed, 455 insertions(+), 339 deletions(-)
Title: Translate CSS Selectors to XPath Expressions
Description: Translates a CSS selector into an equivalent XPath
expression. This allows us to use CSS selectors when working with
the XML package as it can only evaluate XPath expressions. Also
provided are convenience functions useful for using CSS selectors on
XML nodes. This package is a port of the Python package 'cssselect'
(<https://cssselect.readthedocs.io/>).
Author: Simon Potter [aut, trl, cre],
Simon Sapin [aut],
Ian Bicking [aut]
Maintainer: Simon Potter <simon@sjp.co.nz>
Diff between selectr versions 0.4-2 dated 2019-11-20 and 0.5-0 dated 2025-11-21
selectr-0.4-2/selectr/R/zzz.R |only selectr-0.5-0/selectr/.Rinstignore | 3 selectr-0.5-0/selectr/DESCRIPTION | 11 selectr-0.5-0/selectr/LICENCE | 6 selectr-0.5-0/selectr/MD5 | 66 selectr-0.5-0/selectr/NAMESPACE | 44 selectr-0.5-0/selectr/R/parser.R | 276 + selectr-0.5-0/selectr/R/xpath.R | 1870 +++++----- selectr-0.5-0/selectr/README.md | 152 selectr-0.5-0/selectr/inst/CITATION | 18 selectr-0.5-0/selectr/inst/NEWS.Rd | 623 +-- selectr-0.5-0/selectr/man/css_to_xpath.Rd | 138 selectr-0.5-0/selectr/man/querySelectorAll.Rd | 304 - selectr-0.5-0/selectr/tests/testthat/test-adjacent-sibling.R |only selectr-0.5-0/selectr/tests/testthat/test-has.R |only selectr-0.5-0/selectr/tests/testthat/test-main.R | 148 selectr-0.5-0/selectr/tests/testthat/test-method-registration.R | 24 selectr-0.5-0/selectr/tests/testthat/test-nth-child-of.R |only selectr-0.5-0/selectr/tests/testthat/test-nth-child.R |only selectr-0.5-0/selectr/tests/testthat/test-parse-errors.R | 162 selectr-0.5-0/selectr/tests/testthat/test-parser.R | 285 - selectr-0.5-0/selectr/tests/testthat/test-pseudo.R | 152 selectr-0.5-0/selectr/tests/testthat/test-querySelector-XML.R | 232 - selectr-0.5-0/selectr/tests/testthat/test-querySelector-default.R | 16 selectr-0.5-0/selectr/tests/testthat/test-querySelector-xml2.R | 192 - selectr-0.5-0/selectr/tests/testthat/test-quoting.R | 34 selectr-0.5-0/selectr/tests/testthat/test-select-XML.R | 328 - selectr-0.5-0/selectr/tests/testthat/test-select-xml2.R | 328 - selectr-0.5-0/selectr/tests/testthat/test-series.R | 56 selectr-0.5-0/selectr/tests/testthat/test-shakespeare-XML.R | 534 +- selectr-0.5-0/selectr/tests/testthat/test-shakespeare-xml2.R | 536 +- selectr-0.5-0/selectr/tests/testthat/test-specificity.R | 126 selectr-0.5-0/selectr/tests/testthat/test-tokenizer.R | 48 selectr-0.5-0/selectr/tests/testthat/test-translation.R | 246 - selectr-0.5-0/selectr/tests/testthat/test-where.R |only selectr-0.5-0/selectr/tests/testthat/test-xmllang-XML.R | 88 selectr-0.5-0/selectr/tests/testthat/test-xmllang-xml2.R | 88 selectr-0.5-0/selectr/tests/testthat/test-xpath.R | 187 - 38 files changed, 4067 insertions(+), 3254 deletions(-)
Title: Load Configuration Values
Description: A simple approach to configuring R projects with different
parameter values. Configurations are specified using a reduced subset of base
R and parsed accordingly.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ronfig versions 0.0.5 dated 2025-10-14 and 0.0.6 dated 2025-11-21
DESCRIPTION | 6 +- MD5 | 25 ++++---- NAMESPACE | 1 NEWS.md | 10 +++ R/load_config.R | 99 +++++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/ronfig.R | 5 + inst/doc/ronfig.html | 84 +++++++++++++++++++---------- inst/doc/ronfig.qmd | 31 +++++++--- man/load_config.Rd | 50 +++++++++++------ tests/testthat/_snaps/load_config.md | 19 +++--- tests/testthat/test-list_config.R |only tests/testthat/test-load_config.R | 11 +++ vignettes/ronfig.qmd | 31 +++++++--- 14 files changed, 253 insertions(+), 119 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.0-0 dated 2025-10-24 and 2.1-0 dated 2025-11-21
kstMatrix-2.0-0/kstMatrix/R/kmnotions2.R |only kstMatrix-2.0-0/kstMatrix/man/kmnotions2.Rd |only kstMatrix-2.1-0/kstMatrix/Changelog | 9 kstMatrix-2.1-0/kstMatrix/DESCRIPTION | 20 kstMatrix-2.1-0/kstMatrix/MD5 | 104 kstMatrix-2.1-0/kstMatrix/NAMESPACE | 9 kstMatrix-2.1-0/kstMatrix/R/kmbasis.R | 20 kstMatrix-2.1-0/kstMatrix/R/kmbasis.kmsurmisefunction.R |only kstMatrix-2.1-0/kstMatrix/R/kmbasis.matrix.R | 96 kstMatrix-2.1-0/kstMatrix/R/kmcolors.R | 1 kstMatrix-2.1-0/kstMatrix/R/kmfamset.R | 2 kstMatrix-2.1-0/kstMatrix/R/kmfringe.R | 78 kstMatrix-2.1-0/kstMatrix/R/kmgradations.R |only kstMatrix-2.1-0/kstMatrix/R/kmiita2SR.R | 58 kstMatrix-2.1-0/kstMatrix/R/kmlearningpaths.R |only kstMatrix-2.1-0/kstMatrix/R/kmneighbourhood.R | 182 - kstMatrix-2.1-0/kstMatrix/R/kmsetiselement.R |only kstMatrix-2.1-0/kstMatrix/R/kmspace.R | 2 kstMatrix-2.1-0/kstMatrix/R/kmstructure.R | 2 kstMatrix-2.1-0/kstMatrix/R/phsg.R |only kstMatrix-2.1-0/kstMatrix/R/plot.R | 508 ++- kstMatrix-2.1-0/kstMatrix/build/partial.rdb |binary kstMatrix-2.1-0/kstMatrix/build/vignette.rds |binary kstMatrix-2.1-0/kstMatrix/data/phsg.rda |only kstMatrix-2.1-0/kstMatrix/inst/doc/kstMatrix.R | 74 kstMatrix-2.1-0/kstMatrix/inst/doc/kstMatrix.Rmd | 293 +- kstMatrix-2.1-0/kstMatrix/inst/doc/kstMatrix.html | 1868 ++++++++++--- kstMatrix-2.1-0/kstMatrix/man/cad.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/fractions.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmSR2basis.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmbasis.Rd | 2 kstMatrix-2.1-0/kstMatrix/man/kmbasis.kmsurmisefunction.Rd |only kstMatrix-2.1-0/kstMatrix/man/kmbasis.kmsurmiserelation.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmbasis.matrix.Rd | 3 kstMatrix-2.1-0/kstMatrix/man/kmcolors.Rd | 6 kstMatrix-2.1-0/kstMatrix/man/kmdoubleequal.Rd | 2 kstMatrix-2.1-0/kstMatrix/man/kmeqreduction.Rd | 3 kstMatrix-2.1-0/kstMatrix/man/kmfamset.Rd | 2 kstMatrix-2.1-0/kstMatrix/man/kmfringe.Rd | 12 kstMatrix-2.1-0/kstMatrix/man/kmgradations.Rd |only kstMatrix-2.1-0/kstMatrix/man/kmiita2SR.Rd | 12 kstMatrix-2.1-0/kstMatrix/man/kmiswellgraded.Rd | 3 kstMatrix-2.1-0/kstMatrix/man/kmlearningpaths.Rd |only kstMatrix-2.1-0/kstMatrix/man/kmneighbourhood.Rd | 6 kstMatrix-2.1-0/kstMatrix/man/kmnneighbourhood.Rd | 6 kstMatrix-2.1-0/kstMatrix/man/kmnotions.Rd | 3 kstMatrix-2.1-0/kstMatrix/man/kmsetiselement.Rd |only kstMatrix-2.1-0/kstMatrix/man/kmsf2basis.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmspace.Rd | 2 kstMatrix-2.1-0/kstMatrix/man/kmstructure.Rd | 2 kstMatrix-2.1-0/kstMatrix/man/kmsurmisefunction.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmsurmiserelation.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/kmsymmsetdiff.Rd | 8 kstMatrix-2.1-0/kstMatrix/man/kmunionclosure.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/phsg.Rd |only kstMatrix-2.1-0/kstMatrix/man/plot.Rd | 31 kstMatrix-2.1-0/kstMatrix/man/readwrite.Rd | 1 kstMatrix-2.1-0/kstMatrix/man/xpl.Rd | 1 kstMatrix-2.1-0/kstMatrix/vignettes/kstMatrix.Rmd | 293 +- kstMatrix-2.1-0/kstMatrix/vignettes/kstMatrixClasses.png |only 60 files changed, 2515 insertions(+), 1217 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.9.9 dated 2025-09-23 and 0.9.91 dated 2025-11-21
fastplyr-0.9.9/fastplyr/R/legacy.R |only fastplyr-0.9.91/fastplyr/DESCRIPTION | 9 fastplyr-0.9.91/fastplyr/MD5 | 74 ++--- fastplyr-0.9.91/fastplyr/NAMESPACE | 1 fastplyr-0.9.91/fastplyr/NEWS.md | 8 fastplyr-0.9.91/fastplyr/R/abc.R | 27 + fastplyr-0.9.91/fastplyr/R/add_id.R | 142 +++++---- fastplyr-0.9.91/fastplyr/R/collapse_utils.R | 102 +------ fastplyr-0.9.91/fastplyr/R/cpp11.R | 8 fastplyr-0.9.91/fastplyr/R/df_utils.R | 57 +++ fastplyr-0.9.91/fastplyr/R/exprs.R | 3 fastplyr-0.9.91/fastplyr/R/f_arrange.R | 99 ++++++ fastplyr-0.9.91/fastplyr/R/f_duplicates.R | 2 fastplyr-0.9.91/fastplyr/R/f_filter.R | 2 fastplyr-0.9.91/fastplyr/R/f_group_split.R | 48 +-- fastplyr-0.9.91/fastplyr/R/f_nest_by.R | 26 + fastplyr-0.9.91/fastplyr/R/f_rowwise.R | 2 fastplyr-0.9.91/fastplyr/R/f_select.R | 2 fastplyr-0.9.91/fastplyr/R/f_slice.R | 14 fastplyr-0.9.91/fastplyr/R/f_tibble.R | 2 fastplyr-0.9.91/fastplyr/R/fastplyr-package.R | 2 fastplyr-0.9.91/fastplyr/R/rebuild.R | 1 fastplyr-0.9.91/fastplyr/R/remove_na.R | 4 fastplyr-0.9.91/fastplyr/R/tidy_quantiles.R | 2 fastplyr-0.9.91/fastplyr/R/tidy_utils.R | 138 --------- fastplyr-0.9.91/fastplyr/README.md | 144 ++++----- fastplyr-0.9.91/fastplyr/man/f_arrange.Rd | 13 fastplyr-0.9.91/fastplyr/man/f_group_split.Rd | 5 fastplyr-0.9.91/fastplyr/man/fastplyr-package.Rd | 2 fastplyr-0.9.91/fastplyr/src/cpp11.cpp | 16 - fastplyr-0.9.91/fastplyr/src/expressions.cpp | 19 - fastplyr-0.9.91/fastplyr/src/fastplyr.cpp | 18 - fastplyr-0.9.91/fastplyr/src/fastplyr.h | 30 +- fastplyr-0.9.91/fastplyr/src/groups.cpp | 145 ++++++++-- fastplyr-0.9.91/fastplyr/src/mask.cpp | 8 fastplyr-0.9.91/fastplyr/src/tidy.cpp | 123 -------- fastplyr-0.9.91/fastplyr/tests/testthat/test-add_id.R |only fastplyr-0.9.91/fastplyr/tests/testthat/test-df_utils.R | 2 fastplyr-0.9.91/fastplyr/tests/testthat/test-tidy_quantiles.R | 11 39 files changed, 652 insertions(+), 659 deletions(-)
Title: Data Analysis Part of 'IOHprofiler'
Description: The data analysis module for the Iterative Optimization Heuristics
Profiler ('IOHprofiler'). This module provides statistical analysis methods for the
benchmark data generated by optimization heuristics, which can be visualized through a
web-based interface. The benchmark data is usually generated by the
experimentation module, called 'IOHexperimenter'. 'IOHanalyzer' also supports
the widely used 'COCO' (Comparing Continuous Optimisers) data format for benchmarking.
Author: Hao Wang [aut] ,
Diederick Vermetten [cre, aut] ,
Carola Doerr [aut] ,
Thomas Baeck [aut]
Maintainer: Diederick Vermetten <d.l.vermetten@liacs.leidenuniv.nl>
Diff between IOHanalyzer versions 0.1.8.10 dated 2024-03-01 and 0.1.8.17 dated 2025-11-21
DESCRIPTION | 20 ++++++++--------- MD5 | 37 ++++++++++++++++----------------- NAMESPACE | 2 + R/DataSet.R | 13 +++++++++-- R/DataSetList.R | 3 +- R/IOHanalyzer.R | 3 +- R/plotDataSetList.R | 8 +++++-- R/readFiles.R | 10 ++++++-- R/stats.R | 8 ++++--- README.md | 27 +++++++++++------------- inst/shiny-server/server/upload.R | 4 +++ inst/shiny-server/ui.R | 10 ++++++++ inst/shiny-server/ui/BBOB_Analysis.R |only inst/shiny-server/ui/upload_box.R | 2 - man/IOHanalyzer.Rd | 2 - man/Plot.Stats.Significance_Graph.Rd | 2 + man/Plot.cumulative_difference_plot.Rd | 3 +- man/generate_data.CDP.Rd | 3 +- man/get_FV_overview.Rd | 2 - man/glicko2_ranking.Rd | 2 + 20 files changed, 102 insertions(+), 59 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.6.0 dated 2025-08-26 and 1.7.0 dated 2025-11-21
DESCRIPTION | 8 +-- MD5 | 33 ++++++++------ NEWS.md | 11 ++++ R/epiweek-scale.R | 13 ++++- R/isoweek-scale.R | 13 ++++- R/yearweek-scale.R | 11 ++++ build/vignette.rds |binary inst/doc/grates.html | 2 man/scale_x_grates_epiweek.Rd | 11 +++- man/scale_x_grates_isoweek.Rd | 11 +++- man/scale_x_grates_month.Rd | 2 man/scale_x_grates_period.Rd | 2 man/scale_x_grates_year.Rd | 2 man/scale_x_grates_yearquarter.Rd | 2 man/scale_x_grates_yearweek.Rd | 11 +++- tests/testthat/_snaps/plots/epiweek2025.png |only tests/testthat/_snaps/plots/isoweek2025.png |only tests/testthat/_snaps/plots/yearweek2023.png |only tests/testthat/test-plots.R | 60 +++++++++++++++++++++++++++ 19 files changed, 151 insertions(+), 41 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-20 0.3.1
2024-11-13 0.3
2024-07-12 0.2.1
2023-10-18 0.2.0
2023-06-12 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-31 0.4.1
2025-10-15 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-11 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-24 0.3.2
2025-07-16 0.3.1
2024-11-06 0.3
2024-07-08 0.2.1
2023-10-14 0.2.0
2023-06-09 0.1.5
2023-05-31 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-16 0.2.1
2024-11-04 0.2
2024-07-09 0.1.3
2023-06-06 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-07 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-07 0.3
2025-09-21 0.2
2025-07-13 0.1.5
2025-05-16 0.1.4
2024-11-15 0.1.3
2024-11-01 0.1.1
2024-09-19 0.1.0
Title: Construct, Evaluate and Plot Value and Utility Functions
Description: Construct and plot objective hierarchies and associated value and utility functions.
Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables.
Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies.
Get numerical results of the evaluations in standard R data types for further processing.
Author: Peter Reichert [cre, aut],
Nele Schuwirth [aut]
Maintainer: Peter Reichert <peter.reichert@emeriti.eawag.ch>
Diff between utility versions 1.4.6 dated 2023-08-27 and 1.4.7 dated 2025-11-21
DESCRIPTION | 22 ++++- MD5 | 104 ++++++++++++++-------------- inst/NEWS | 7 + man/figures/aggregationadd.pdf |binary man/figures/aggregationaddmin.pdf |binary man/figures/aggregationaddmin.png |binary man/figures/aggregationaddpower.pdf | 6 - man/figures/aggregationaddpower.png |binary man/figures/aggregationaddsplitpower.pdf | 6 - man/figures/aggregationaddsplitpower.png |binary man/figures/aggregationbonusmalus.pdf | 6 - man/figures/aggregationbonusmalus.png |binary man/figures/aggregationgeo.pdf | 6 - man/figures/aggregationgeo.png |binary man/figures/aggregationharmo.pdf | 6 - man/figures/aggregationharmo.png |binary man/figures/aggregationmax.pdf | 6 - man/figures/aggregationmax.png |binary man/figures/aggregationmin.pdf |binary man/figures/aggregationmin.png |binary man/figures/aggregationmix.pdf | 6 - man/figures/aggregationmix.png |binary man/figures/aggregationmult.pdf | 6 - man/figures/aggregationmult.png |binary man/figures/aggregationrevaddpower.pdf | 6 - man/figures/aggregationrevaddpower.png |binary man/figures/aggregationrevaddsplitpower.pdf | 6 - man/figures/aggregationrevaddsplitpower.png |binary man/figures/aggregationrevgeo.pdf | 6 - man/figures/aggregationrevgeo.png |binary man/figures/aggregationrevharmo.pdf | 6 - man/figures/aggregationrevharmo.png |binary man/utility-package.Rd | 11 +- man/utility.aggregate.add.Rd | 2 man/utility.aggregate.addmin.Rd | 2 man/utility.aggregate.addpower.Rd | 2 man/utility.aggregate.addsplitpower.Rd | 2 man/utility.aggregate.bonusmalus.Rd | 2 man/utility.aggregate.cobbdouglas.Rd | 2 man/utility.aggregate.geo.Rd | 2 man/utility.aggregate.geooff.Rd | 2 man/utility.aggregate.harmo.Rd | 2 man/utility.aggregate.harmooff.Rd | 2 man/utility.aggregate.max.Rd | 2 man/utility.aggregate.min.Rd | 2 man/utility.aggregate.mix.Rd | 2 man/utility.aggregate.mult.Rd | 2 man/utility.aggregate.revaddpower.Rd | 2 man/utility.aggregate.revaddsplitpower.Rd | 2 man/utility.aggregate.revgeo.Rd | 2 man/utility.aggregate.revgeooff.Rd | 2 man/utility.aggregate.revharmo.Rd | 2 man/utility.aggregate.revharmooff.Rd | 2 53 files changed, 137 insertions(+), 119 deletions(-)
Title: Simulated Sampling Procedure for Community Ecology
Description: The Simulation-based Sampling Protocol (SSP) is an R package designed to estimate sampling effort in studies of ecological communities. It is based on the concept of pseudo-multivariate standard error (MultSE) (Anderson & Santana-Garcon, 2015, <doi:10.1111/ele.12385>) and the simulation of ecological data. The theoretical background is described in Guerra-Castro et al. (2020, <doi:10.1111/ecog.05284>).
Author: Edlin Guerra-Castro [aut, cre],
Maite Mascaro [aut],
Nuno Simoes [aut],
Juan Cruz-Motta [aut],
Juan Cajas [aut]
Maintainer: Edlin Guerra-Castro <edlinguerra@gmail.com>
Diff between SSP versions 1.0.2 dated 2025-04-24 and 1.1.0 dated 2025-11-21
DESCRIPTION | 10 +-- MD5 | 37 ++++++------- NEWS.md | 19 ++++++ R/datquality.R | 10 --- R/ioptimum.R | 16 ----- R/plot_ssp.R | 12 ---- R/sampsd.R | 9 --- R/simdata.R | 132 ++++++++++++++++++++++++++++-------------------- R/summary_ssp.R | 10 --- inst/doc/SSP-guide.R | 102 ++++++++++++++++++------------------- inst/doc/SSP-guide.Rmd | 19 ++++-- inst/doc/SSP-guide.html | 89 +++++++++++++++++++------------- man/datquality.Rd | 10 --- man/ioptimum.Rd | 16 ----- man/plot_ssp.Rd | 12 ---- man/sampsd.Rd | 9 --- man/simdata.Rd | 17 ++++-- man/summary_ssp.Rd | 10 --- vignettes/SSP-guide.Rmd | 19 ++++-- vignettes/fig2b.png |only 20 files changed, 284 insertions(+), 274 deletions(-)
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-2 dated 2025-09-21 and 3.4-3 dated 2025-11-21
DESCRIPTION | 10 - MD5 | 26 +- NEWS | 13 + R/clusterinfo.R | 356 ++++++++++++++++++++++++---------------- R/rclusterBKBC.R | 37 ++-- build |only inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/default.expand.Rd | 2 man/macros/defns.Rd | 3 man/rGRFgauss.Rd |only man/rLGCP.Rd | 2 man/rmh.default.Rd | 30 +-- man/spatstat.random-internal.Rd | 14 - tests/Random.R | 29 +++ 15 files changed, 324 insertions(+), 200 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] ,
Werner Stahel [ctb] , f.robftest, last,
p.scales, p.dnorm),
Andreas Ruckstuhl [ctb] , p.profileTraces,
p.res.2x),
Christian Keller [ctb] , p.tachoPlot),
Kjetil Halvorsen [ctb] , ecdf.ksCI),
Alain Hauser [ctb] , is.whole,
[...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-22 dated 2025-09-01 and 1.1-23 dated 2025-11-21
DESCRIPTION | 12 ++++++------ MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/TA.plot.R | 6 +++--- R/misc-goodies.R | 9 +++++++++ R/pkgDesc.R | 4 +++- R/prettylab.R | 6 ++++++ build/partial.rdb |binary inst/NEWS.Rd | 20 ++++++++++++++++++++ man/formatN.Rd |only man/n.plot.Rd | 20 ++++++++++++++++---- man/pkgDesc.Rd | 14 +++++++++++++- 12 files changed, 88 insertions(+), 25 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.5 dated 2025-03-07 and 0.1.6 dated 2025-11-21
ChangeLog | 10 + DESCRIPTION | 10 - MD5 | 60 ++++---- NAMESPACE | 21 +- R/RcppExports.R | 8 + R/qx_functions.R | 4 R/starnames.R | 2 R/zstd_file_functions.R |only build/vignette.rds |binary data/starnames.rda |binary inst/doc/vignette.R | 56 +++---- inst/doc/vignette.html | 317 +++++++++++++++++++++++--------------------- man/qd_deserialize.Rd | 2 man/qd_read.Rd | 2 man/qd_save.Rd | 2 man/qd_serialize.Rd | 2 man/qs_deserialize.Rd | 2 man/qs_read.Rd | 2 man/qs_save.Rd | 2 man/qs_serialize.Rd | 2 man/starnames.Rd | 2 man/zstd_compress_file.Rd |only man/zstd_decompress_file.Rd |only src/RcppExports.cpp | 57 +++++-- src/ZSTD/zstd.c | 76 +++++----- src/io/io_common.h | 4 src/io/zstd_file.h |only src/qd_deserializer.h | 18 +- src/qd_serializer.h | 4 src/qx_file_headers.h | 2 src/qx_functions.cpp | 107 +++++++++----- src/zstd_file_functions.h |only tests/correctness_testing.R | 13 + tests/utility_testing.R |only 34 files changed, 454 insertions(+), 333 deletions(-)
Title: Ecological Metadata as Linked Data
Description: This is a utility for transforming Ecological Metadata Language
('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a
list-based representation of 'EML' in R, so that 'EML' data can easily
be manipulated using standard 'R' tools. This makes this package an
effective backend for other 'R'-based tools working with 'EML.' By
abstracting away the complexity of 'XML' Schema, developers can
build around native 'R' list objects and not have to worry about satisfying
many of the additional constraints of set by the schema (such as element
ordering, which is handled automatically). Additionally, the 'JSON-LD'
representation enables the use of developer-friendly 'JSON' parsing and
serialization that may facilitate the use of 'EML' in contexts outside of 'R,'
as well as the informatics-friendly serializations such as 'RDF' and
'SPARQL' queries.
Author: Carl Boettiger [aut, cre, cph] ,
Matthew B. Jones [aut, cph] ,
Bryce Mecum [aut, cph]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between emld versions 0.5.1 dated 2020-09-27 and 0.5.2 dated 2025-11-21
DESCRIPTION | 18 +- MD5 | 25 +-- NAMESPACE | 2 NEWS.md | 10 + R/as_jsonlist.R | 5 R/as_xml.R | 2 R/emld-package.R |only README.md | 43 ++--- build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 38 +--- inst/doc/tutorial.R | 134 ++++++++-------- inst/doc/tutorial.html | 404 +++++++++++++++++++++++++++++-------------------- man/emld-package.Rd | 14 + 14 files changed, 400 insertions(+), 299 deletions(-)