Title: Building and Managing Local Databases from 'Google Earth Engine'
Description: Simplifies the creation, management, and updating of local databases using data extracted from 'Google Earth Engine' ('GEE'). It integrates with 'GEE' to store, aggregate, and process spatio-temporal data, leveraging 'SQLite' for efficient, serverless storage. The 'geeLite' package provides utilities for data transformation and supports real-time monitoring and analysis of geospatial features, making it suitable for researchers and practitioners in geospatial science. For details, see Kurbucz and Andrée (2025) "Building and Managing Local Databases from Google Earth Engine with the geeLite R Package" <https://hdl.handle.net/10986/43165>.
Author: Marcell T. Kurbucz [aut, cre],
Bo Pieter Johannes Andree [aut]
Maintainer: Marcell T. Kurbucz <m.kurbucz@ucl.ac.uk>
Diff between geeLite versions 1.0.2 dated 2025-07-21 and 1.0.3 dated 2025-11-22
DESCRIPTION | 11 MD5 | 88 NAMESPACE | 12 R/gee_install.R | 290 - R/run_geelite.R | 3533 ++++++++------- R/run_geelite._halfgoogleimportR.R |only R/utils.R | 984 ++-- README.md | 352 - build/vignette.rds |binary inst/doc/geeLite.R | 292 - inst/doc/geeLite.Rmd | 550 +- inst/doc/geeLite.html | 8295 +++++++++---------------------------- man/batch_drive_export.Rd | 23 man/compare_lists.Rd | 9 man/compare_vectors.Rd | 9 man/compile_db.Rd | 11 man/db_connect.Rd | 5 man/ee_as_tidyee.Rd |only man/extract_drive_stats.Rd | 22 man/gee_install.Rd | 4 man/gee_message.Rd | 23 man/gen_messages.Rd | 9 man/get_batch.Rd | 11 man/get_batches.Rd | 11 man/get_bins.Rd | 10 man/get_cases.Rd | 15 man/get_grid.Rd | 10 man/get_images.Rd | 17 man/get_reducers.Rd | 9 man/get_shapes.Rd | 11 man/get_task.Rd | 9 man/local_chunk_extract.Rd | 13 man/print_version.Rd | 7 man/process_vector.Rd | 17 man/read_grid.Rd | 10 man/remove_tables.Rd | 8 man/run_geelite.Rd | 23 man/set_depend.Rd | 28 man/set_dirs.Rd | 8 man/set_progress_bar.Rd | 10 man/update_grid_stats.Rd | 11 man/write_grid.Rd | 7 man/write_grid_stats.Rd | 7 man/write_log_file.Rd | 8 man/write_state_file.Rd | 8 vignettes/geeLite.Rmd | 550 +- 46 files changed, 5852 insertions(+), 9488 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Lucia Cobo Sanchez [ctb, cph],
Ottma [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.5-3 dated 2025-09-22 and 3.6-0 dated 2025-11-22
DESCRIPTION | 15 ++-- MD5 | 72 +++++++++++---------- NAMESPACE | 14 ++++ NEWS | 40 +++++++++++ R/bermantest.R | 4 - R/cdftest.R | 1 R/eval.fv.R | 33 +++++++-- R/evidence.R | 4 - R/fv.R | 12 +-- R/hasenvelope.R | 2 R/laslett.R | 4 - R/localpcf.R | 4 - R/markcorr.R | 131 +++++++++++++++++++++++++++++---------- R/nncount.R |only R/pairs.im.R | 2 R/quadrattest.R | 57 +++++++++++++--- R/rho2hat.R | 2 R/rhohat.R | 2 R/roc.R | 47 +++++++++---- R/smoothfun.R | 2 R/spatialcdf.R | 2 R/ssf.R | 6 - R/tolcon.R |only build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/Emark.Rd | 4 + man/auc.Rd | 4 - man/macros/defns.Rd | 3 man/markconnect.Rd | 10 ++ man/markcorr.Rd | 11 ++- man/markcrosscorr.Rd | 4 + man/markequal.Rd |only man/markvario.Rd | 5 + man/nncount.Rd |only man/nnequal.Rd |only man/relrisk.ppp.Rd | 19 ++--- man/roc.Rd | 4 - man/spatstat.explore-internal.Rd | 10 ++ man/tolcon.Rd |only 40 files changed, 380 insertions(+), 152 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.6.5 dated 2025-11-06 and 1.7.0 dated 2025-11-22
DESCRIPTION | 6 +- MD5 | 38 ++++++++------- NAMESPACE | 4 + NEWS.md | 13 +++++ R/00_GridSearch.R | 13 ++--- R/00_exametrikaPlot.R | 6 +- R/00_exametrikaPrint.R | 2 R/02_TestItemFunctions.R | 1 R/04C_ParameterEstimation.R | 1 R/07_IRM.R | 43 +++++++++++------ R/08C_BNM_GA.R | 24 +++++++++- R/09B_LDLRA_GA.R | 11 ++++ R/12_LRA_ordinal.R | 1 R/13_LRA_rated.R | 1 README.md | 2 man/Biclustering_IRM.Rd |only man/IRM.Rd | 103 ++----------------------------------------- man/StrLearningGA_BNM.Rd |only man/StrLearningPBIL_BNM.Rd |only man/StrLearningPBIL_LDLRA.Rd |only man/plot.exametrika.Rd | 6 +- man/print.exametrika.Rd | 2 22 files changed, 122 insertions(+), 155 deletions(-)
Title: Stochastic Tree Ensembles (XBART and BART) for Supervised
Learning and Causal Inference
Description: Flexible stochastic tree ensemble software.
Robust implementations of Bayesian Additive Regression Trees (BART)
Chipman, George, McCulloch (2010) <doi:10.1214/09-AOAS285>
for supervised learning and Bayesian Causal Forests (BCF)
Hahn, Murray, Carvalho (2020) <doi:10.1214/19-BA1195>
for causal inference. Enables model serialization and parallel sampling
and provides a low-level interface for custom stochastic forest samplers.
Author: Drew Herren [aut, cre] ,
Richard Hahn [aut],
Jared Murray [aut],
Carlos Carvalho [aut],
Jingyu He [aut],
Pedro Lima [ctb],
stochtree contributors [cph],
Eigen contributors [cph] ,
xgboost contributors [cph] ,
treelite contributors [cph] ,
Microsoft C [...truncated...]
Maintainer: Drew Herren <drewherrenopensource@gmail.com>
Diff between stochtree versions 0.1.1 dated 2025-02-08 and 0.2.0 dated 2025-11-22
stochtree-0.1.1/stochtree/src/Makevars |only stochtree-0.2.0/stochtree/DESCRIPTION | 10 stochtree-0.2.0/stochtree/MD5 | 222 stochtree-0.2.0/stochtree/NAMESPACE | 15 stochtree-0.2.0/stochtree/NEWS.md | 43 stochtree-0.2.0/stochtree/R/bart.R | 4293 ++++--- stochtree-0.2.0/stochtree/R/bcf.R | 6130 ++++++---- stochtree-0.2.0/stochtree/R/calibration.R | 36 stochtree-0.2.0/stochtree/R/config.R | 826 - stochtree-0.2.0/stochtree/R/cpp11.R | 100 stochtree-0.2.0/stochtree/R/data.R | 520 stochtree-0.2.0/stochtree/R/forest.R | 2091 ++- stochtree-0.2.0/stochtree/R/generics.R | 8 stochtree-0.2.0/stochtree/R/kernel.R | 481 stochtree-0.2.0/stochtree/R/model.R | 525 stochtree-0.2.0/stochtree/R/posterior_transformation.R |only stochtree-0.2.0/stochtree/R/random_effects.R | 845 - stochtree-0.2.0/stochtree/R/serialization.R | 1106 + stochtree-0.2.0/stochtree/R/stochtree-package.R | 7 stochtree-0.2.0/stochtree/R/utils.R | 1469 +- stochtree-0.2.0/stochtree/R/variance.R | 22 stochtree-0.2.0/stochtree/README.md | 2 stochtree-0.2.0/stochtree/cleanup |only stochtree-0.2.0/stochtree/configure |only stochtree-0.2.0/stochtree/configure.ac |only stochtree-0.2.0/stochtree/configure.win |only stochtree-0.2.0/stochtree/inst/COPYRIGHTS | 7 stochtree-0.2.0/stochtree/man/Forest.Rd | 54 stochtree-0.2.0/stochtree/man/ForestDataset.Rd | 62 stochtree-0.2.0/stochtree/man/ForestModel.Rd | 73 stochtree-0.2.0/stochtree/man/ForestModelConfig.Rd | 134 stochtree-0.2.0/stochtree/man/ForestSamples.Rd | 83 stochtree-0.2.0/stochtree/man/RandomEffectSamples.Rd | 17 stochtree-0.2.0/stochtree/man/RandomEffectsDataset.Rd | 97 stochtree-0.2.0/stochtree/man/bart.Rd | 31 stochtree-0.2.0/stochtree/man/bcf.Rd | 52 stochtree-0.2.0/stochtree/man/computeForestLeafIndices.Rd | 5 stochtree-0.2.0/stochtree/man/computeForestMaxLeafIndex.Rd | 15 stochtree-0.2.0/stochtree/man/compute_bart_posterior_interval.Rd |only stochtree-0.2.0/stochtree/man/compute_bcf_posterior_interval.Rd |only stochtree-0.2.0/stochtree/man/compute_contrast_bart_model.Rd |only stochtree-0.2.0/stochtree/man/compute_contrast_bcf_model.Rd |only stochtree-0.2.0/stochtree/man/createBARTModelFromCombinedJson.Rd | 8 stochtree-0.2.0/stochtree/man/createBARTModelFromCombinedJsonString.Rd | 8 stochtree-0.2.0/stochtree/man/createBARTModelFromJson.Rd | 8 stochtree-0.2.0/stochtree/man/createBARTModelFromJsonFile.Rd | 8 stochtree-0.2.0/stochtree/man/createBARTModelFromJsonString.Rd | 10 stochtree-0.2.0/stochtree/man/createBCFModelFromCombinedJson.Rd | 30 stochtree-0.2.0/stochtree/man/createBCFModelFromCombinedJsonString.Rd | 30 stochtree-0.2.0/stochtree/man/createBCFModelFromJson.Rd | 38 stochtree-0.2.0/stochtree/man/createBCFModelFromJsonFile.Rd | 38 stochtree-0.2.0/stochtree/man/createBCFModelFromJsonString.Rd | 30 stochtree-0.2.0/stochtree/man/createForestModel.Rd | 8 stochtree-0.2.0/stochtree/man/createForestModelConfig.Rd | 8 stochtree-0.2.0/stochtree/man/expand_dims_1d.Rd |only stochtree-0.2.0/stochtree/man/expand_dims_2d.Rd |only stochtree-0.2.0/stochtree/man/expand_dims_2d_diag.Rd |only stochtree-0.2.0/stochtree/man/getRandomEffectSamples.bartmodel.Rd | 16 stochtree-0.2.0/stochtree/man/getRandomEffectSamples.bcfmodel.Rd | 38 stochtree-0.2.0/stochtree/man/loadVectorJson.Rd | 2 stochtree-0.2.0/stochtree/man/predict.bartmodel.Rd | 22 stochtree-0.2.0/stochtree/man/predict.bcfmodel.Rd | 35 stochtree-0.2.0/stochtree/man/preprocessPredictionData.Rd | 8 stochtree-0.2.0/stochtree/man/preprocessTrainData.Rd | 6 stochtree-0.2.0/stochtree/man/resetForestModel.Rd | 22 stochtree-0.2.0/stochtree/man/resetRandomEffectsModel.Rd | 4 stochtree-0.2.0/stochtree/man/resetRandomEffectsTracker.Rd | 4 stochtree-0.2.0/stochtree/man/rootResetRandomEffectsModel.Rd | 4 stochtree-0.2.0/stochtree/man/rootResetRandomEffectsTracker.Rd | 4 stochtree-0.2.0/stochtree/man/sample_bart_posterior_predictive.Rd |only stochtree-0.2.0/stochtree/man/sample_bcf_posterior_predictive.Rd |only stochtree-0.2.0/stochtree/man/sample_without_replacement.Rd |only stochtree-0.2.0/stochtree/man/saveBARTModelToJson.Rd | 8 stochtree-0.2.0/stochtree/man/saveBARTModelToJsonFile.Rd | 8 stochtree-0.2.0/stochtree/man/saveBARTModelToJsonString.Rd | 8 stochtree-0.2.0/stochtree/man/saveBCFModelToJson.Rd | 38 stochtree-0.2.0/stochtree/man/saveBCFModelToJsonFile.Rd | 38 stochtree-0.2.0/stochtree/man/saveBCFModelToJsonString.Rd | 38 stochtree-0.2.0/stochtree/src/Makevars.in |only stochtree-0.2.0/stochtree/src/Makevars.win.in |only stochtree-0.2.0/stochtree/src/R_data.cpp | 126 stochtree-0.2.0/stochtree/src/R_random_effects.cpp | 8 stochtree-0.2.0/stochtree/src/container.cpp | 4 stochtree-0.2.0/stochtree/src/cpp11.cpp | 210 stochtree-0.2.0/stochtree/src/cutpoint_candidates.cpp | 1 stochtree-0.2.0/stochtree/src/data.cpp | 4 stochtree-0.2.0/stochtree/src/forest.cpp | 47 stochtree-0.2.0/stochtree/src/include/stochtree/category_tracker.h | 4 stochtree-0.2.0/stochtree/src/include/stochtree/common.h | 4 stochtree-0.2.0/stochtree/src/include/stochtree/container.h | 32 stochtree-0.2.0/stochtree/src/include/stochtree/cutpoint_candidates.h | 2 stochtree-0.2.0/stochtree/src/include/stochtree/data.h | 63 stochtree-0.2.0/stochtree/src/include/stochtree/discrete_sampler.h |only stochtree-0.2.0/stochtree/src/include/stochtree/ensemble.h | 54 stochtree-0.2.0/stochtree/src/include/stochtree/io.h | 2 stochtree-0.2.0/stochtree/src/include/stochtree/leaf_model.h | 148 stochtree-0.2.0/stochtree/src/include/stochtree/log.h | 2 stochtree-0.2.0/stochtree/src/include/stochtree/mainpage.h | 2 stochtree-0.2.0/stochtree/src/include/stochtree/meta.h | 1 stochtree-0.2.0/stochtree/src/include/stochtree/openmp_utils.h |only stochtree-0.2.0/stochtree/src/include/stochtree/partition_tracker.h | 31 stochtree-0.2.0/stochtree/src/include/stochtree/random.h | 1 stochtree-0.2.0/stochtree/src/include/stochtree/random_effects.h | 57 stochtree-0.2.0/stochtree/src/include/stochtree/tree.h | 37 stochtree-0.2.0/stochtree/src/include/stochtree/tree_sampler.h | 387 stochtree-0.2.0/stochtree/src/include/stochtree/variance_model.h | 6 stochtree-0.2.0/stochtree/src/io.cpp | 2 stochtree-0.2.0/stochtree/src/kernel.cpp | 4 stochtree-0.2.0/stochtree/src/partition_tracker.cpp | 10 stochtree-0.2.0/stochtree/src/sampler.cpp | 111 stochtree-0.2.0/stochtree/src/serialization.cpp | 3 stochtree-0.2.0/stochtree/src/stochtree_types.h | 1 stochtree-0.2.0/stochtree/src/tree.cpp | 4 stochtree-0.2.0/stochtree/tests/testthat/test-bart.R | 895 + stochtree-0.2.0/stochtree/tests/testthat/test-bcf.R | 1203 + stochtree-0.2.0/stochtree/tests/testthat/test-categorical.R | 237 stochtree-0.2.0/stochtree/tests/testthat/test-data-preprocessing.R | 74 stochtree-0.2.0/stochtree/tests/testthat/test-dataset.R |only stochtree-0.2.0/stochtree/tests/testthat/test-forest-container.R |only stochtree-0.2.0/stochtree/tests/testthat/test-forest.R |only stochtree-0.2.0/stochtree/tests/testthat/test-predict.R | 567 stochtree-0.2.0/stochtree/tests/testthat/test-residual.R | 189 stochtree-0.2.0/stochtree/tests/testthat/test-serialization.R | 317 stochtree-0.2.0/stochtree/tests/testthat/test-utils.R |only 124 files changed, 16287 insertions(+), 8471 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Bill Huang [aut],
Kevin Kramer [ctb],
Duong Tran [ctb],
Raphael Huang [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.4.4 dated 2024-03-19 and 1.4.5 dated 2025-11-22
DESCRIPTION | 12 - MD5 | 195 ++++++++++++------------ NEWS.md | 12 + R/create_style.R | 4 R/create_table_docx.R | 157 ++++++++++++++++++- R/create_table_html.R | 133 ++++++++++++++-- R/create_table_pdf.R | 33 +++- R/create_table_rtf.R | 191 ++++++++++++++++++++++- R/create_table_text.R | 2 R/page_template_docx.R | 35 +++- R/page_template_html.R | 24 ++ R/page_template_pdf.R | 77 +++++++-- R/page_template_rtf.R | 25 ++- R/plot_spec.R | 40 +++- R/report_spec.r | 39 +++- R/sizing_functions.R | 170 ++++++++++++++++---- R/table_spec.r | 7 R/utilities.R | 141 ++++++++++++----- R/write_docx.R | 40 ++++ R/write_report_docx.R | 20 +- README.md | 3 build/vignette.rds |binary inst/doc/reporter-break.Rmd | 6 inst/doc/reporter-break.html | 7 inst/doc/reporter-faq.Rmd | 16 + inst/doc/reporter-faq.html | 17 ++ inst/doc/reporter-figure.Rmd | 2 inst/doc/reporter-figure.html | 3 inst/doc/reporter-fonts.Rmd | 2 inst/doc/reporter-fonts.html | 3 inst/doc/reporter-listing.Rmd | 6 inst/doc/reporter-listing.html | 6 inst/doc/reporter-pageby.Rmd | 6 inst/doc/reporter-pageby.html | 6 inst/doc/reporter-rtf.Rmd | 2 inst/doc/reporter-rtf.html | 3 inst/doc/reporter-spanning.Rmd | 2 inst/doc/reporter-spanning.html | 3 inst/doc/reporter-stub.Rmd | 2 inst/doc/reporter-stub.html | 3 inst/doc/reporter-styles.Rmd | 22 +- inst/doc/reporter-styles.html | 23 +- inst/doc/reporter-super.Rmd | 4 inst/doc/reporter-super.html | 5 inst/doc/reporter-table.Rmd | 2 inst/doc/reporter-table.html | 3 inst/doc/reporter-text.Rmd | 2 inst/doc/reporter-text.html | 3 inst/doc/reporter-title_header.Rmd | 2 inst/doc/reporter-title_header.html | 3 inst/doc/reporter-wrap.Rmd | 4 inst/doc/reporter-wrap.html | 5 inst/doc/reporter.R | 2 inst/doc/reporter.Rmd | 2 inst/doc/reporter.html | 3 man/create_plot.Rd | 16 + man/create_report.Rd | 8 man/define.Rd | 4 man/footnotes.Rd | 10 - man/reporter.Rd | 5 tests/testthat/data/pdf2_81_input.rds |only tests/testthat/docx/example10.emf |only tests/testthat/docx/test14.docx |only tests/testthat/docx/test20.docx |only tests/testthat/docx/test20.jpg |binary tests/testthat/docx/test57.zip |only tests/testthat/test-create_table_docx.R | 11 + tests/testthat/test-create_table_html.R | 8 tests/testthat/test-create_table_pdf.R | 27 +++ tests/testthat/test-create_table_rtf.R | 17 +- tests/testthat/test-docx.R | 232 ++++++++++++++++++++++++++++ tests/testthat/test-html.R | 140 +++++++++++++++++ tests/testthat/test-page_template_docx.R | 251 ++++++++++++++++++------------- tests/testthat/test-page_template_html.R | 64 +++++++ tests/testthat/test-page_template_pdf.R | 27 +++ tests/testthat/test-page_template_rtf.R | 69 ++++++++ tests/testthat/test-pdf.R | 183 ++++++++++++++++++---- tests/testthat/test-pdf2.R | 160 +++++++++++++++++++ tests/testthat/test-rtf.R | 229 +++++++++++++++++++++++----- tests/testthat/test-rtf2.R | 135 ++++++++++++++++ tests/testthat/test-sizing_functions.R | 83 +++++++++- tests/testthat/test-system.R | 114 +++++++++++++- tests/testthat/test-user.R | 13 - tests/testthat/test-utilities.R | 69 ++++++++ tests/testthat/test-write_docx.R | 18 ++ vignettes/reporter-break.Rmd | 6 vignettes/reporter-faq.Rmd | 16 + vignettes/reporter-figure.Rmd | 2 vignettes/reporter-fonts.Rmd | 2 vignettes/reporter-listing.Rmd | 6 vignettes/reporter-pageby.Rmd | 6 vignettes/reporter-rtf.Rmd | 2 vignettes/reporter-spanning.Rmd | 2 vignettes/reporter-stub.Rmd | 2 vignettes/reporter-styles.Rmd | 22 +- vignettes/reporter-super.Rmd | 4 vignettes/reporter-table.Rmd | 2 vignettes/reporter-text.Rmd | 2 vignettes/reporter-title_header.Rmd | 2 vignettes/reporter-wrap.Rmd | 4 vignettes/reporter.Rmd | 2 101 files changed, 2898 insertions(+), 617 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.0.2-2 dated 2025-09-19 and 15.2.2-1 dated 2025-11-22
ChangeLog | 78 + DESCRIPTION | 8 MD5 | 315 +++--- NAMESPACE | 1 R/RcppExports.R | 9 R/inline.R | 5 README.md | 17 build/partial.rdb |binary build/vignette.rds |binary configure | 333 +++--- configure.ac | 264 ++--- inst/NEWS.Rd | 38 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadillo/config/RcppArmadilloConfig.h | 13 inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h.in | 21 inst/include/current/armadillo | 1 inst/include/current/armadillo_bits/Base_meat.hpp | 8 inst/include/current/armadillo_bits/Col_bones.hpp | 7 inst/include/current/armadillo_bits/Col_meat.hpp | 44 inst/include/current/armadillo_bits/Cube_meat.hpp | 2 inst/include/current/armadillo_bits/Mat_bones.hpp | 31 inst/include/current/armadillo_bits/Mat_meat.hpp | 503 +++++++++- inst/include/current/armadillo_bits/Row_bones.hpp | 10 inst/include/current/armadillo_bits/Row_meat.hpp | 51 - inst/include/current/armadillo_bits/SpMat_bones.hpp | 4 inst/include/current/armadillo_bits/SpMat_meat.hpp | 4 inst/include/current/armadillo_bits/arma_forward.hpp | 4 inst/include/current/armadillo_bits/arma_rng.hpp | 127 ++ inst/include/current/armadillo_bits/arma_version.hpp | 4 inst/include/current/armadillo_bits/constants.hpp | 6 inst/include/current/armadillo_bits/distr_param.hpp | 20 inst/include/current/armadillo_bits/field_meat.hpp | 2 inst/include/current/armadillo_bits/fn_all.hpp | 6 inst/include/current/armadillo_bits/fn_any.hpp | 6 inst/include/current/armadillo_bits/fn_circshift.hpp | 18 inst/include/current/armadillo_bits/fn_cumprod.hpp | 8 inst/include/current/armadillo_bits/fn_cumsum.hpp | 8 inst/include/current/armadillo_bits/fn_det.hpp | 2 inst/include/current/armadillo_bits/fn_diagmat.hpp | 4 inst/include/current/armadillo_bits/fn_diagvec.hpp | 6 inst/include/current/armadillo_bits/fn_diff.hpp | 6 inst/include/current/armadillo_bits/fn_expmat.hpp | 2 inst/include/current/armadillo_bits/fn_flip.hpp | 8 inst/include/current/armadillo_bits/fn_hist.hpp | 6 inst/include/current/armadillo_bits/fn_histc.hpp | 4 inst/include/current/armadillo_bits/fn_index_max.hpp | 6 inst/include/current/armadillo_bits/fn_index_min.hpp | 6 inst/include/current/armadillo_bits/fn_kron.hpp | 4 inst/include/current/armadillo_bits/fn_logmat.hpp | 6 inst/include/current/armadillo_bits/fn_max.hpp | 12 inst/include/current/armadillo_bits/fn_mean.hpp | 8 inst/include/current/armadillo_bits/fn_median.hpp | 6 inst/include/current/armadillo_bits/fn_min.hpp | 12 inst/include/current/armadillo_bits/fn_normalise.hpp | 2 inst/include/current/armadillo_bits/fn_orth_null.hpp | 4 inst/include/current/armadillo_bits/fn_prod.hpp | 13 inst/include/current/armadillo_bits/fn_quantile.hpp | 4 inst/include/current/armadillo_bits/fn_rande.hpp |only inst/include/current/armadillo_bits/fn_range.hpp | 4 inst/include/current/armadillo_bits/fn_repelem.hpp | 4 inst/include/current/armadillo_bits/fn_shuffle.hpp | 6 inst/include/current/armadillo_bits/fn_sort.hpp | 4 inst/include/current/armadillo_bits/fn_sort_index.hpp | 4 inst/include/current/armadillo_bits/fn_sqrtmat.hpp | 6 inst/include/current/armadillo_bits/fn_symmat.hpp | 16 inst/include/current/armadillo_bits/glue_join_bones.hpp | 10 inst/include/current/armadillo_bits/glue_join_meat.hpp | 118 +- inst/include/current/armadillo_bits/glue_kron_bones.hpp | 4 inst/include/current/armadillo_bits/glue_kron_meat.hpp | 25 inst/include/current/armadillo_bits/glue_polyfit_bones.hpp | 4 inst/include/current/armadillo_bits/glue_polyfit_meat.hpp | 61 + inst/include/current/armadillo_bits/glue_polyval_bones.hpp | 3 inst/include/current/armadillo_bits/glue_polyval_meat.hpp | 36 inst/include/current/armadillo_bits/glue_quantile_bones.hpp | 6 inst/include/current/armadillo_bits/glue_quantile_meat.hpp | 44 inst/include/current/armadillo_bits/glue_times_bones.hpp | 29 inst/include/current/armadillo_bits/glue_times_meat.hpp | 82 + inst/include/current/armadillo_bits/glue_trapz_bones.hpp | 4 inst/include/current/armadillo_bits/glue_trapz_meat.hpp | 37 inst/include/current/armadillo_bits/op_accu_bones.hpp | 6 inst/include/current/armadillo_bits/op_accu_meat.hpp | 98 + inst/include/current/armadillo_bits/op_all_meat.hpp | 2 inst/include/current/armadillo_bits/op_any_meat.hpp | 2 inst/include/current/armadillo_bits/op_circshift_bones.hpp | 2 inst/include/current/armadillo_bits/op_circshift_meat.hpp | 23 inst/include/current/armadillo_bits/op_clamp_bones.hpp | 4 inst/include/current/armadillo_bits/op_clamp_meat.hpp | 65 - inst/include/current/armadillo_bits/op_cumprod_bones.hpp | 6 inst/include/current/armadillo_bits/op_cumprod_meat.hpp | 39 inst/include/current/armadillo_bits/op_cumsum_bones.hpp | 6 inst/include/current/armadillo_bits/op_cumsum_meat.hpp | 39 inst/include/current/armadillo_bits/op_diff_bones.hpp | 6 inst/include/current/armadillo_bits/op_diff_meat.hpp | 48 inst/include/current/armadillo_bits/op_flip_bones.hpp | 19 inst/include/current/armadillo_bits/op_flip_meat.hpp | 280 ++--- inst/include/current/armadillo_bits/op_htrans_bones.hpp | 6 inst/include/current/armadillo_bits/op_htrans_meat.hpp | 37 inst/include/current/armadillo_bits/op_max_bones.hpp | 3 inst/include/current/armadillo_bits/op_max_meat.hpp | 24 inst/include/current/armadillo_bits/op_mean_bones.hpp | 3 inst/include/current/armadillo_bits/op_mean_meat.hpp | 18 inst/include/current/armadillo_bits/op_median_bones.hpp | 3 inst/include/current/armadillo_bits/op_median_meat.hpp | 19 inst/include/current/armadillo_bits/op_min_bones.hpp | 3 inst/include/current/armadillo_bits/op_min_meat.hpp | 24 inst/include/current/armadillo_bits/op_nonzeros_bones.hpp | 3 inst/include/current/armadillo_bits/op_nonzeros_meat.hpp | 16 inst/include/current/armadillo_bits/op_repmat_bones.hpp | 2 inst/include/current/armadillo_bits/op_repmat_meat.hpp | 17 inst/include/current/armadillo_bits/op_reshape_bones.hpp | 2 inst/include/current/armadillo_bits/op_reshape_meat.hpp | 28 inst/include/current/armadillo_bits/op_reverse_bones.hpp | 6 inst/include/current/armadillo_bits/op_reverse_meat.hpp | 142 +- inst/include/current/armadillo_bits/op_sort_bones.hpp | 3 inst/include/current/armadillo_bits/op_sort_meat.hpp | 25 inst/include/current/armadillo_bits/op_stddev_bones.hpp | 3 inst/include/current/armadillo_bits/op_stddev_meat.hpp | 20 inst/include/current/armadillo_bits/op_strans_bones.hpp | 6 inst/include/current/armadillo_bits/op_strans_meat.hpp | 35 inst/include/current/armadillo_bits/op_sum_bones.hpp | 12 inst/include/current/armadillo_bits/op_sum_meat.hpp | 102 ++ inst/include/current/armadillo_bits/op_trimat_bones.hpp | 3 inst/include/current/armadillo_bits/op_trimat_meat.hpp | 25 inst/include/current/armadillo_bits/op_var_bones.hpp | 3 inst/include/current/armadillo_bits/op_var_meat.hpp | 20 inst/include/current/armadillo_bits/op_vectorise_bones.hpp | 4 inst/include/current/armadillo_bits/op_vectorise_meat.hpp | 48 inst/include/current/armadillo_bits/operator_ostream.hpp | 2 inst/include/current/armadillo_bits/spglue_join_bones.hpp | 6 inst/include/current/armadillo_bits/spglue_join_meat.hpp | 34 inst/include/current/armadillo_bits/spglue_kron_bones.hpp | 3 inst/include/current/armadillo_bits/spglue_kron_meat.hpp | 15 inst/include/current/armadillo_bits/spglue_minus_bones.hpp | 3 inst/include/current/armadillo_bits/spglue_minus_meat.hpp | 15 inst/include/current/armadillo_bits/spglue_plus_bones.hpp | 3 inst/include/current/armadillo_bits/spglue_plus_meat.hpp | 15 inst/include/current/armadillo_bits/spglue_schur_bones.hpp | 3 inst/include/current/armadillo_bits/spglue_schur_meat.hpp | 15 inst/include/current/armadillo_bits/spglue_times_bones.hpp | 6 inst/include/current/armadillo_bits/spglue_times_meat.hpp | 32 inst/include/current/armadillo_bits/spop_htrans_bones.hpp | 6 inst/include/current/armadillo_bits/spop_htrans_meat.hpp | 37 inst/include/current/armadillo_bits/spop_repmat_bones.hpp | 3 inst/include/current/armadillo_bits/spop_repmat_meat.hpp | 14 inst/include/current/armadillo_bits/spop_strans_bones.hpp | 6 inst/include/current/armadillo_bits/spop_strans_meat.hpp | 29 inst/include/current/armadillo_bits/spop_trimat_bones.hpp | 3 inst/include/current/armadillo_bits/spop_trimat_meat.hpp | 18 inst/include/current/armadillo_bits/subview_bones.hpp | 22 inst/include/current/armadillo_bits/subview_meat.hpp | 258 ++++- inst/include/current/armadillo_bits/unwrap.hpp | 24 inst/tinytest/test_Rlapack.R | 2 inst/tinytest/test_misc.R | 7 man/armadillo_version.Rd | 7 src/Makevars.in | 5 src/Makevars.win | 1 src/RcppArmadillo.cpp | 16 src/RcppExports.cpp | 11 159 files changed, 3368 insertions(+), 1167 deletions(-)
Title: Adaptive Multivariate Integration over Hypercubes
Description: R wrappers around the cubature C library of Steven
G. Johnson for adaptive multivariate integration over hypercubes
and the Cuba C library of Thomas Hahn for deterministic and
Monte Carlo integration. Scalar and vector interfaces for
cubature and Cuba routines are provided; the vector interfaces
are highly recommended as demonstrated in the package
vignette.
Author: Balasubramanian Narasimhan [aut, cre],
Manuel Koller [ctb],
Dirk Eddelbuettel [ctb],
Steven G. Johnson [aut],
Thomas Hahn [aut],
Annie Bouvier [aut],
Kien Kieu [aut],
Simen Gaure [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.stanford.edu>
Diff between cubature versions 2.1.4 dated 2025-06-02 and 2.1.4-1 dated 2025-11-22
DESCRIPTION | 10 MD5 | 30 NEWS.md | 6 build/vignette.rds |binary inst/doc/cubature.R | 155 - inst/doc/cubature.Rmd | 159 - inst/doc/cubature.html | 1746 ++++++++++----------- inst/doc/version2.html | 41 src/Cuba/a.wasm |only src/Cuba/config.guess | 1802 ++++++++++++--------- src/Cuba/config.h.in | 57 src/Cuba/config.sub | 3173 ++++++++++++++++++++++---------------- src/Cuba/configure | 4031 ++++++++++++++++++++++++++----------------------- src/Cuba/configure.ac | 122 + src/Cuba/install-sh | 596 ++++--- src/Makevars.webr |only vignettes/cubature.Rmd | 159 - 17 files changed, 6712 insertions(+), 5375 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction and maximum penalized likelihood with powers of the Jeffreys prior as penalty. The 'brglmFit()' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reducing adjusted score equations in Kenne et al. (2017) <doi:10.1093/biomet/asx046>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <https://www.jstor.org/stable/2345592>. See Kosmidis et al (2020) <doi:10.1007/s11222-019-09860-6> for more details. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bi [...truncated...]
Author: Ioannis Kosmidis [aut, cre] ,
Euloge Clovis Kenne Pagui [aut] ,
Federico Boiocchi [ctb],
Philipp Sterzinger [ctb] ,
Kjell Konis [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm2 versions 1.0.0 dated 2025-08-29 and 1.0.1 dated 2025-11-22
DESCRIPTION | 8 MD5 | 52 ++--- NEWS.md | 24 ++ R/data.R | 2 R/expo.R | 8 R/mdyplFit.R | 318 ---------------------------------- R/ordinal_superiority.R | 2 R/plrtest.R | 6 R/se.R | 44 ++++ R/solve_se.R | 209 +++++++++------------- R/summary-mdyplFit.R |only README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/tinytest/test-mdyplFit.R | 2 inst/tinytest/test-se.R | 2 inst/tinytest/test-summary_mdyplFit.R | 10 - man/MultipleFeatures.Rd | 2 man/confint.mdyplFit.Rd | 15 - man/expo.brglmFit.Rd | 8 man/mdyplControl.Rd | 2 man/mdyplFit.Rd | 4 man/ordinal_superiority.bracl.Rd | 2 man/plrtest.mdyplFit.Rd | 10 - man/se0_ridge.Rd |only man/sloe.Rd | 2 man/solve_se.Rd | 18 + man/summary.mdyplFit.Rd | 55 +---- 28 files changed, 262 insertions(+), 547 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-05 1.0.4
2018-08-30 1.0.3
2018-07-10 1.0.2
2018-06-22 1.0.1
2018-06-06 1.0.0